AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1108280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108280 MtrunA17_Chr7g0241791 67.978 178 25 3 270 435 319 476 4.75e-68 224
Msa1108280 MtrunA17_Chr7g0241791 53.271 107 18 2 8 102 279 365 2.81e-22 99.0
Msa1108280 MtrunA17_Chr7g0242071 57.459 181 57 4 270 435 364 539 1.12e-53 187
Msa1108280 MtrunA17_Chr7g0242071 57.547 106 23 4 12 102 331 429 1.33e-25 109
Msa1108280 MtrunA17_Chr7g0241951 53.333 180 50 5 270 435 365 524 2.23e-46 167
Msa1108280 MtrunA17_Chr7g0241951 48.718 117 29 3 1 102 315 415 4.40e-21 95.5
Msa1108280 MtrunA17_Chr7g0242181 48.045 179 73 5 270 435 366 537 1.38e-40 152
Msa1108280 MtrunA17_Chr7g0242181 54.795 73 29 2 30 102 360 428 2.37e-13 72.0
Msa1108280 MtrunA17_Chr7g0242001 50.877 171 37 4 270 435 116 244 7.39e-40 143
Msa1108280 MtrunA17_Chr7g0242001 55.738 122 29 4 2 102 66 183 5.02e-31 119
Msa1108280 MtrunA17_Chr7g0242011 45.699 186 66 5 270 435 379 549 4.65e-38 145
Msa1108280 MtrunA17_Chr7g0242011 52.055 73 30 1 30 102 373 440 1.69e-11 66.2
Msa1108280 MtrunA17_Chr7g0241971 46.286 175 80 6 270 435 196 365 3.38e-36 136
Msa1108280 MtrunA17_Chr7g0241971 50.538 93 41 3 10 102 172 259 4.74e-14 73.2
Msa1108280 MtrunA17_Chr7g0242051 48.466 163 68 4 270 421 354 511 1.85e-34 134
Msa1108280 MtrunA17_Chr7g0242051 48.387 93 40 3 10 102 332 416 6.05e-12 67.4
Msa1108280 MtrunA17_Chr7g0242121 56.780 118 32 3 1 103 13 126 3.32e-34 124
Msa1108280 MtrunA17_Chr7g0242121 62.319 69 22 1 270 338 63 127 9.11e-21 88.2
Msa1108280 MtrunA17_Chr7g0242151 45.402 174 73 4 270 431 378 541 6.21e-33 130
Msa1108280 MtrunA17_Chr7g0242151 52.055 73 27 1 30 102 372 436 2.06e-11 65.9
Msa1108280 MtrunA17_Chr7g0242101 43.956 182 70 5 270 435 432 597 1.87e-32 129
Msa1108280 MtrunA17_Chr7g0242091 45.198 177 73 4 270 435 400 563 1.28e-31 127
Msa1108280 MtrunA17_Chr3g0107251 35.359 181 88 4 269 435 309 474 2.19e-24 105
Msa1108280 MtrunA17_Chr3g0091831 34.444 180 87 6 270 434 317 480 2.33e-19 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 75 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAATGGAGAGGAATTATT+TGG 0.178375 7_3:+51010893 None:intergenic
AATCTATTTCGTTGATTATA+CGG 0.188981 7_3:+51011640 None:intergenic
AACACAAACACAACTGTTTC+TGG 0.217616 7_3:-51017718 Msa1108280:CDS
AACACAAACATAACTGTTTC+TGG 0.217993 7_3:-51011278 Msa1108280:CDS
CGGCTCTTATCGTTGTTTCT+AGG 0.228502 7_3:+51011302 None:intergenic
CGGCTCTCATCGTTGATTCT+AGG 0.236346 7_3:+51017742 None:intergenic
TTTGGGTTACTTGTGAGCTT+TGG 0.277117 7_3:+51012625 None:intergenic
GAATTATTTGGGAAAATTAT+AGG 0.278067 7_3:+51010905 None:intergenic
TTGGGTTACTTGTGAGCTTT+GGG 0.289850 7_3:+51012626 None:intergenic
TAGTCTGTTGTAGAGCTTAG+AGG 0.313093 7_3:-51012741 Msa1108280:CDS
AAACAGTTGTGTTTGTGTTT+CGG 0.335993 7_3:+51017722 None:intergenic
GAATGGAAAGCATTTGGATT+TGG 0.342460 7_3:-51017919 Msa1108280:CDS
CCAGTTTAGTCTTGTTGATC+TGG 0.345728 7_3:+51011583 None:intergenic
ATTCCAAGACTTACCTTCAT+TGG 0.356570 7_3:+51012385 None:intergenic
AAACAGTTATGTTTGTGTTT+CGG 0.359641 7_3:+51011282 None:intergenic
GTGGCAATGGCAAATTTACT+TGG 0.367417 7_3:-51017690 Msa1108280:CDS
GTGGCGATGGCAAATTTACT+TGG 0.375628 7_3:-51011250 Msa1108280:CDS
AATGGTGTAATCTAATTGCT+TGG 0.404633 7_3:-51017804 Msa1108280:CDS
TGTGGTTTGTTATTTATGCT+TGG 0.411844 7_3:-51017945 Msa1108280:CDS
TTATTTATGCTTGGTGTGAA+TGG 0.415841 7_3:-51017936 Msa1108280:CDS
TGGTGTGAATGGAAAGCATT+TGG 0.423167 7_3:-51017925 Msa1108280:CDS
AGCAGATATGCTTCGCCGAT+TGG 0.423716 7_3:-51012284 Msa1108280:CDS
GCTGTAGATCAGGTGTATTT+CGG 0.430465 7_3:-51012427 Msa1108280:CDS
ATCTATTTCGTTGATTATAC+GGG 0.432691 7_3:+51011641 None:intergenic
GTTGTTTCTAGGTGCAAAAC+GGG 0.434961 7_3:+51011313 None:intergenic
TTTGGATCATATTCTTGAAA+AGG 0.437523 7_3:-51017901 Msa1108280:CDS
CCAGATCAACAAGACTAAAC+TGG 0.440625 7_3:-51011583 Msa1108280:CDS
TAGAGGAAAGGTGTGGAGAA+TGG 0.440660 7_3:-51012724 Msa1108280:CDS
CGTTGTTTCTAGGTGCAAAA+CGG 0.442369 7_3:+51011312 None:intergenic
GCAGATATGCTTCGCCGATT+GGG 0.446625 7_3:-51012283 Msa1108280:CDS
CTTGAAAAGGTGAAATTGAA+TGG 0.447779 7_3:-51011413 Msa1108280:intron
GCAATGGAGAGGAATTATTT+GGG 0.453065 7_3:+51010894 None:intergenic
ATTTGGGAAAATTATAGGCT+AGG 0.460869 7_3:+51010910 None:intergenic
TGGTAGCGTTGCTGTAGATC+AGG 0.462969 7_3:-51012437 Msa1108280:CDS
CACAATAGCAAATATTCAAA+TGG 0.467660 7_3:-51011108 Msa1108280:CDS
ATGGTGAAGATAGTTCCAAC+TGG 0.468164 7_3:-51012695 Msa1108280:CDS
CGTTGATTCTAGGTACAAAA+CGG 0.471277 7_3:+51017752 None:intergenic
GTGGTGTAATCTAACTGCTT+GGG 0.477771 7_3:-51011363 Msa1108280:CDS
ATGGTGTAATCTAATTGCTT+GGG 0.481231 7_3:-51017803 Msa1108280:CDS
GTAAGTCTTGGAATGGAGAA+TGG 0.488193 7_3:-51012376 Msa1108280:CDS
CAATTACAGCTTCGTTGCAA+CGG 0.490236 7_3:-51010973 Msa1108280:CDS
AGTGGTGTAATCTAACTGCT+TGG 0.494672 7_3:-51011364 Msa1108280:CDS
CATCATCTGCAGAACAGATC+AGG 0.495009 7_3:+51011207 None:intergenic
CATCATCTGCAGAACAGATC+AGG 0.495009 7_3:+51017647 None:intergenic
AAATCAGTGTTTCTCCCAAT+CGG 0.501299 7_3:+51012269 None:intergenic
CTTGAAAAGGTGAAATTGAG+AGG 0.507978 7_3:-51017888 Msa1108280:intron
AAGCCAATGAAGGTAAGTCT+TGG 0.508195 7_3:-51012388 Msa1108280:CDS
TCATTCACATGCCGTCATCA+TGG 0.509246 7_3:-51011020 Msa1108280:CDS
GTTTCTGGTCAGCGTGGCGA+TGG 0.520067 7_3:-51011263 Msa1108280:CDS
GTTGATTCTAGGTACAAAAC+GGG 0.521070 7_3:+51017753 None:intergenic
GTTTCTGGTCAGCGTGGCAA+TGG 0.522087 7_3:-51017703 Msa1108280:CDS
CATTCACATGCCGTCATCAT+GGG 0.527338 7_3:-51011019 Msa1108280:CDS
TACGTTTCAAATTCCTCTGT+AGG 0.527776 7_3:+51012658 None:intergenic
AACTTCAAGGTGAAATTGAA+CGG 0.529718 7_3:-51017855 Msa1108280:intron
GAAATCGTGGCCGTCCCAGT+TGG 0.546928 7_3:+51012680 None:intergenic
TAGATCAGGTGTATTTCGGT+TGG 0.550373 7_3:-51012423 Msa1108280:CDS
TTGATGTGGAAGAGTTTATG+TGG 0.565693 7_3:-51017963 None:intergenic
AAAGAGCAATAAGCCAATGA+AGG 0.572440 7_3:-51012398 Msa1108280:CDS
AATGAAGGTAAGTCTTGGAA+TGG 0.573492 7_3:-51012383 Msa1108280:CDS
TAGAGCTTAGAGGAAAGGTG+TGG 0.576607 7_3:-51012731 Msa1108280:CDS
TGGCAATGGCAAATTTACTT+GGG 0.582430 7_3:-51017689 Msa1108280:CDS
TTTGAATATTTGCTATTGTG+TGG 0.583540 7_3:+51011111 None:intergenic
TGTTGTAGAGCTTAGAGGAA+AGG 0.588563 7_3:-51012736 Msa1108280:CDS
TGGCGATGGCAAATTTACTT+GGG 0.592300 7_3:-51011249 Msa1108280:CDS
TCACATGCCGTCATCATGGG+TGG 0.616609 7_3:-51011016 Msa1108280:CDS
GAAGATAGTTCCAACTGGGA+CGG 0.625792 7_3:-51012690 Msa1108280:CDS
AATTCCTCTGTAGGAAATCG+TGG 0.631548 7_3:+51012667 None:intergenic
TTAACAGCCACCCATGATGA+CGG 0.633185 7_3:+51011009 None:intergenic
GTGTGGAGAATGGTAGAGAA+TGG 0.648209 7_3:-51012714 Msa1108280:CDS
TATGTTCTGAAGTTGAACAC+TGG 0.659827 7_3:-51012349 Msa1108280:CDS
TGGTGAAGATAGTTCCAACT+GGG 0.672049 7_3:-51012694 Msa1108280:CDS
TTGCAACGAAGCTGTAATTG+CGG 0.699436 7_3:+51010976 None:intergenic
ACAACTGTTTCTGGTCAGCG+TGG 0.712881 7_3:-51017709 Msa1108280:CDS
ATAACTGTTTCTGGTCAGCG+TGG 0.718274 7_3:-51011269 Msa1108280:CDS
ACGGCCACGATTTCCTACAG+AGG 0.732793 7_3:-51012671 Msa1108280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTTATATATATTTTT+TGG + chr7_3:51015999-51016018 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr7_3:51013397-51013416 Msa1108280:intron 0.0%
!! TTGAAAAATAATAAAATTTG+TGG + chr7_3:51011678-51011697 None:intergenic 10.0%
!! TCAAGTAATAATATTTATAA+AGG - chr7_3:51011864-51011883 Msa1108280:intron 10.0%
!!! TTTTCAAAAAAAAAATTAAG+AGG - chr7_3:51012318-51012337 Msa1108280:CDS 10.0%
!!! ATTTACTTATATCATTATTT+TGG + chr7_3:51012883-51012902 None:intergenic 10.0%
!!! AGTAAATTAATTTTTTTTAG+GGG - chr7_3:51015031-51015050 Msa1108280:intron 10.0%
!! AAATAGGATATTAAATAAAT+TGG - chr7_3:51015734-51015753 Msa1108280:intron 10.0%
!! AATAGGATATTAAATAAATT+GGG - chr7_3:51015735-51015754 Msa1108280:intron 10.0%
!! AATTTACTTTGAATTATTTG+AGG + chr7_3:51011490-51011509 None:intergenic 15.0%
!! ATTTATGTTATAGTATGTTT+AGG + chr7_3:51011614-51011633 None:intergenic 15.0%
!! TTGTAAATAGGATATTAAAT+TGG - chr7_3:51011930-51011949 Msa1108280:intron 15.0%
!! TGTAAATAGGATATTAAATT+GGG - chr7_3:51011931-51011950 Msa1108280:intron 15.0%
!!! ATTCAAACTGTAAAAATTTT+AGG + chr7_3:51012256-51012275 None:intergenic 15.0%
!!! AATTTTAGGTCTTATTTTAA+TGG + chr7_3:51012407-51012426 None:intergenic 15.0%
!!! TGCTGTTTTTTTTTTTTTTT+GGG + chr7_3:51012808-51012827 None:intergenic 15.0%
!! TTAAATATAGTCATAATTCT+AGG + chr7_3:51013575-51013594 None:intergenic 15.0%
!!! CTTTTATTTTTTGTTAACAA+AGG + chr7_3:51013707-51013726 None:intergenic 15.0%
!!! ATTTTAATTGGACATATATA+AGG + chr7_3:51013738-51013757 None:intergenic 15.0%
!! ATTCATTATGATATATTTAG+TGG - chr7_3:51013903-51013922 Msa1108280:intron 15.0%
!! ATTAATTTACTTATCTCATA+AGG + chr7_3:51015022-51015041 None:intergenic 15.0%
!!! AATTCCTTTAAAAAAAAAGA+AGG + chr7_3:51015082-51015101 None:intergenic 15.0%
!! ATTTATGTTATAGTATGTTT+AGG + chr7_3:51011614-51011633 None:intergenic 15.0%
!! ATAGGATATTAAATAAATTG+GGG - chr7_3:51015736-51015755 Msa1108280:intron 15.0%
!!! TTATTAGTTTTTATTTCTCT+TGG + chr7_3:51015788-51015807 None:intergenic 15.0%
!!! ATTATTTTGAATAATAAGGT+TGG + chr7_3:51015882-51015901 None:intergenic 15.0%
!!! ACATTATATCTTATTCATTT+TGG - chr7_3:51015918-51015937 Msa1108280:intron 15.0%
!!! TATATATATTTTTTGGTACT+AGG + chr7_3:51015992-51016011 None:intergenic 15.0%
!!! AACTTTTATATATACATAAC+CGG - chr7_3:51016033-51016052 Msa1108280:intron 15.0%
!! TTAATCAATAATATATCATG+TGG - chr7_3:51016377-51016396 Msa1108280:intron 15.0%
!!! AATTTTTAAAAAACTCAGAT+AGG + chr7_3:51016617-51016636 None:intergenic 15.0%
!!! TCTGAGTTTTTTAAAAATTT+AGG - chr7_3:51016618-51016637 Msa1108280:intron 15.0%
!!! TTTTCATTTTCTTTTTTCTT+CGG - chr7_3:51016706-51016725 Msa1108280:intron 15.0%
!! AATAAAATATAAGAATAACG+TGG - chr7_3:51016905-51016924 Msa1108280:intron 15.0%
!! ATAAAATATAAGAATAACGT+GGG - chr7_3:51016906-51016925 Msa1108280:intron 15.0%
!!! TCAGTTCTAGTTTTTTTTAA+TGG - chr7_3:51011706-51011725 Msa1108280:intron 20.0%
!! CAAAAAGAAAATTGCAATAT+TGG + chr7_3:51011772-51011791 None:intergenic 20.0%
!! GTAAATAGGATATTAAATTG+GGG - chr7_3:51011932-51011951 Msa1108280:intron 20.0%
!! TAAATAGGATATTAAATTGG+GGG - chr7_3:51011933-51011952 Msa1108280:intron 20.0%
!! TCACATAAGATATTAATTAG+GGG + chr7_3:51012167-51012186 None:intergenic 20.0%
!! CTCACATAAGATATTAATTA+GGG + chr7_3:51012168-51012187 None:intergenic 20.0%
!! ACTCACATAAGATATTAATT+AGG + chr7_3:51012169-51012188 None:intergenic 20.0%
!! TAATATCTTATGTGAGTTTA+TGG - chr7_3:51012172-51012191 Msa1108280:intron 20.0%
!! ATTAATATAGTACTTTCCTT+TGG + chr7_3:51012434-51012453 None:intergenic 20.0%
!!! TATAGGTCTTACTTTTATTT+TGG + chr7_3:51012512-51012531 None:intergenic 20.0%
!!! TTTTCTTTGGTACAAATTAT+AGG + chr7_3:51012587-51012606 None:intergenic 20.0%
!!! ATTAATATAGGACTTTTCTT+TGG + chr7_3:51012600-51012619 None:intergenic 20.0%
!! TTAGGTAGAAACATTAATAT+AGG + chr7_3:51012446-51012465 None:intergenic 20.0%
!!! CTGCTGTTTTTTTTTTTTTT+TGG + chr7_3:51012809-51012828 None:intergenic 20.0%
!! CAAAAAAAAAAAAAAACAGC+AGG - chr7_3:51012807-51012826 Msa1108280:intron 20.0%
!! ACCAAAAAATTGTCATAAAA+TGG - chr7_3:51012834-51012853 Msa1108280:intron 20.0%
!!! TCCATTTTATGACAATTTTT+TGG + chr7_3:51012838-51012857 None:intergenic 20.0%
!! GAAAAAACAAAGATGAAATT+AGG + chr7_3:51012953-51012972 None:intergenic 20.0%
!! TTTCTTATAATAGAGATAAG+AGG - chr7_3:51013865-51013884 Msa1108280:intron 20.0%
!! TAAATATATTTGAGTCAACA+AGG - chr7_3:51014016-51014035 Msa1108280:intron 20.0%
!! GAATTAGATAAGTAAGTAAA+AGG - chr7_3:51014152-51014171 Msa1108280:intron 20.0%
!! AATGACTAGAATAATTTCTT+AGG - chr7_3:51014220-51014239 Msa1108280:intron 20.0%
!! ATGACTAGAATAATTTCTTA+GGG - chr7_3:51014221-51014240 Msa1108280:intron 20.0%
!! AATGTTGTAAGTTAATAAAG+AGG - chr7_3:51014258-51014277 Msa1108280:intron 20.0%
!! ATGTTGTAAGTTAATAAAGA+GGG - chr7_3:51014259-51014278 Msa1108280:intron 20.0%
!! ACAAGAATAAACTAAGAATA+CGG - chr7_3:51014288-51014307 Msa1108280:intron 20.0%
!!! TATTAAAGGCGATTTTTTTT+TGG - chr7_3:51014337-51014356 Msa1108280:intron 20.0%
!!! TAAGGCTTCTTTATATTTTA+AGG + chr7_3:51014423-51014442 None:intergenic 20.0%
!!! ATTTTCTGTTTCTATAACTA+AGG + chr7_3:51014441-51014460 None:intergenic 20.0%
!!! CATACCTTCTTTTTTTTTAA+AGG - chr7_3:51015075-51015094 Msa1108280:intron 20.0%
!!! AATTTGTACATACATTTTCT+CGG - chr7_3:51015098-51015117 Msa1108280:intron 20.0%
!! TAGGATATTAAATAAATTGG+GGG - chr7_3:51015737-51015756 Msa1108280:intron 20.0%
!!! ACTTTTATATATACATAACC+GGG - chr7_3:51016034-51016053 Msa1108280:intron 20.0%
!!! ATTTTTTTCACTAGATATTG+CGG + chr7_3:51016075-51016094 None:intergenic 20.0%
!! TATATATATATGGATCATGT+AGG - chr7_3:51016343-51016362 Msa1108280:intron 20.0%
!! GAAGAAAAAAGAAAATGAAA+AGG + chr7_3:51016707-51016726 None:intergenic 20.0%
!!! TTTTTTCTTCGGTTATTTTA+AGG - chr7_3:51016717-51016736 Msa1108280:intron 20.0%
!! CAATACAATAAAGTTTACAT+AGG + chr7_3:51016789-51016808 None:intergenic 20.0%
!! TATAGGTATTCATATTGTAT+TGG - chr7_3:51017186-51017205 Msa1108280:intron 20.0%
!!! AATCTATTTCGTTGATTATA+CGG + chr7_3:51017222-51017241 None:intergenic 20.0%
!!! GAAATAGATTTTATTATTCG+AGG - chr7_3:51017232-51017251 Msa1108280:intron 20.0%
!! AAGTACTATATTTATCATCT+TGG + chr7_3:51017393-51017412 None:intergenic 20.0%
!! ATGATAAATATAGTACTTCT+AGG - chr7_3:51017395-51017414 Msa1108280:intron 20.0%
! TTTGGATCATATTCTTGAAA+AGG - chr7_3:51010958-51010977 Msa1108280:CDS 25.0%
! CAAAAACAACAAAAGCAAAA+TGG - chr7_3:51011037-51011056 Msa1108280:CDS 25.0%
!!! TTTTCTTGTTTTTGAGAAGT+TGG + chr7_3:51011239-51011258 None:intergenic 25.0%
! AAAATCAAAATCGATGAATC+TGG + chr7_3:51011341-51011360 None:intergenic 25.0%
! ATATTAAAGCTACAGAGAAA+AGG + chr7_3:51011524-51011543 None:intergenic 25.0%
! ATTACATCACAAAAGTAAGA+TGG - chr7_3:51011637-51011656 Msa1108280:CDS 25.0%
! AATTGCAATATTGGTACTTA+GGG + chr7_3:51011763-51011782 None:intergenic 25.0%
! AAATTGCAATATTGGTACTT+AGG + chr7_3:51011764-51011783 None:intergenic 25.0%
! CAACAATGTCAATTGTAAAT+AGG - chr7_3:51011918-51011937 Msa1108280:intron 25.0%
! ATCAAGATAAAAATGTGAGT+AGG - chr7_3:51012005-51012024 Msa1108280:intron 25.0%
!!! TGTTTTGTTACTTTGTAATC+AGG - chr7_3:51012046-51012065 Msa1108280:intron 25.0%
! CACATAAGATATTAATTAGG+GGG + chr7_3:51012166-51012185 None:intergenic 25.0%
! GGATTTCATAATACAAACAT+AGG - chr7_3:51012292-51012311 Msa1108280:CDS 25.0%
!! TTTCCTTTGGTACAAATTTT+AGG + chr7_3:51012421-51012440 None:intergenic 25.0%
! TTTCTACATGAATAAAACAG+CGG - chr7_3:51012480-51012499 Msa1108280:intron 25.0%
! CTTTCTTTGGTACAAATTAT+AGG + chr7_3:51012529-51012548 None:intergenic 25.0%
!! ATCTTTTATAGGACTTTCTT+TGG + chr7_3:51012542-51012561 None:intergenic 25.0%
! AAAGAAAGTCCTATAAAAGA+TGG - chr7_3:51012541-51012560 Msa1108280:intron 25.0%
!! ATTGTTGTACCATCTTTTAT+AGG + chr7_3:51012553-51012572 None:intergenic 25.0%
!!! TTTTTGGGTTTTAAATGAAG+TGG + chr7_3:51012793-51012812 None:intergenic 25.0%
!! ATGAAAAGTGAGTATTGTTA+AGG - chr7_3:51012921-51012940 Msa1108280:intron 25.0%
!! ACCCTTTTATTAGATTCAAA+GGG - chr7_3:51013034-51013053 Msa1108280:intron 25.0%
! ACCCTTTGAATCTAATAAAA+GGG + chr7_3:51013038-51013057 None:intergenic 25.0%
! ATATACACTGTTTAAAAGCA+AGG + chr7_3:51013683-51013702 None:intergenic 25.0%
! ACCTTATATAAGTACGTTAT+TGG - chr7_3:51013809-51013828 Msa1108280:intron 25.0%
! TCCAATAACGTACTTATATA+AGG + chr7_3:51013813-51013832 None:intergenic 25.0%
! GAAGAGATTTCTCAAAATAA+TGG - chr7_3:51014115-51014134 Msa1108280:intron 25.0%
! TATCCATTTATATGATCTCT+TGG + chr7_3:51014183-51014202 None:intergenic 25.0%
! TGTTGTAAGTTAATAAAGAG+GGG - chr7_3:51014260-51014279 Msa1108280:intron 25.0%
! TAATAGTTTACGATGATTGA+TGG - chr7_3:51014314-51014333 Msa1108280:intron 25.0%
!!! TTTTTTGGTAGTGGTATTAA+AGG - chr7_3:51014374-51014393 Msa1108280:intron 25.0%
! AGTACATCATGAAAGATAAA+GGG + chr7_3:51014498-51014517 None:intergenic 25.0%
! GAATCACATAATAAATCACA+TGG + chr7_3:51014551-51014570 None:intergenic 25.0%
!! TACATTATCTCTTTGGTTTA+CGG - chr7_3:51014576-51014595 Msa1108280:intron 25.0%
! AACAAAATTATGCAGAGTAA+CGG + chr7_3:51014670-51014689 None:intergenic 25.0%
! AAAATCAAAATCCATGAATC+TGG + chr7_3:51014704-51014723 None:intergenic 25.0%
! ATGTCAACATGATATATTAG+TGG + chr7_3:51014790-51014809 None:intergenic 25.0%
! TGAAATACTAATTGGAATGT+TGG - chr7_3:51014933-51014952 Msa1108280:intron 25.0%
! ATGCACAAATAATTTACTCT+TGG + chr7_3:51015058-51015077 None:intergenic 25.0%
!!! TCATGCAGACAATTTTTTTT+AGG + chr7_3:51015369-51015388 None:intergenic 25.0%
! CAACAATGTCAATTGTAAAT+AGG - chr7_3:51011918-51011937 Msa1108280:intron 25.0%
!! TCTTATTCATTTTGGATTGA+AGG - chr7_3:51015926-51015945 Msa1108280:intron 25.0%
!!! ATTTTTTGGTACTAGGTATT+AGG + chr7_3:51015985-51016004 None:intergenic 25.0%
! ATATATAAAAGTTCCTGAGT+GGG + chr7_3:51016026-51016045 None:intergenic 25.0%
! TATATATAAAAGTTCCTGAG+TGG + chr7_3:51016027-51016046 None:intergenic 25.0%
!!! TTTTTTTCACTAGATATTGC+GGG + chr7_3:51016074-51016093 None:intergenic 25.0%
!!! TTCCAACTAACCTTTTTTTT+GGG + chr7_3:51016254-51016273 None:intergenic 25.0%
!!! ATTCCAACTAACCTTTTTTT+TGG + chr7_3:51016255-51016274 None:intergenic 25.0%
! TAACAATGTGAAATTACCTA+TGG - chr7_3:51016642-51016661 Msa1108280:intron 25.0%
! CAACAAAGAAATTCACATAA+AGG + chr7_3:51016850-51016869 None:intergenic 25.0%
!! ATCTATTTCGTTGATTATAC+GGG + chr7_3:51017221-51017240 None:intergenic 25.0%
! TTAGAACTTCTGATATCAAA+GGG - chr7_3:51017335-51017354 Msa1108280:intron 25.0%
! TATTTATCATCTTGGAGTAT+TGG + chr7_3:51017385-51017404 None:intergenic 25.0%
! TTTGGATCATATTCTTGAAA+AGG - chr7_3:51010958-51010977 Msa1108280:CDS 25.0%
! AAACAGTTATGTTTGTGTTT+CGG + chr7_3:51017580-51017599 None:intergenic 25.0%
!!! TTTTCTTGTTTTTGAGAAGT+TGG + chr7_3:51011239-51011258 None:intergenic 25.0%
! CAAAAACAAGAAAATTGTTG+TGG - chr7_3:51017685-51017704 Msa1108280:CDS 25.0%
!!! TTTGAATATTTGCTATTGTG+TGG + chr7_3:51017751-51017770 None:intergenic 25.0%
! CACAATAGCAAATATTCAAA+TGG - chr7_3:51017751-51017770 Msa1108280:CDS 25.0%
!! CATTTTTCATTAAACGAATC+TGG - chr7_3:51017801-51017820 Msa1108280:CDS 25.0%
!! TGTGGTTTGTTATTTATGCT+TGG - chr7_3:51010914-51010933 Msa1108280:CDS 30.0%
!! TTATTTATGCTTGGTGTGAA+TGG - chr7_3:51010923-51010942 Msa1108280:CDS 30.0%
AACTTCAAGGTGAAATTGAA+CGG - chr7_3:51011004-51011023 Msa1108280:CDS 30.0%
AATGGTGTAATCTAATTGCT+TGG - chr7_3:51011055-51011074 Msa1108280:CDS 30.0%
ATGGTGTAATCTAATTGCTT+GGG - chr7_3:51011056-51011075 Msa1108280:CDS 30.0%
AAACAGTTGTGTTTGTGTTT+CGG + chr7_3:51011140-51011159 None:intergenic 30.0%
CAAAAACAAGAAAATTGCTG+TGG - chr7_3:51011245-51011264 Msa1108280:CDS 30.0%
! AAATTGCTGTGGATCATTTT+TGG - chr7_3:51011256-51011275 Msa1108280:CDS 30.0%
TAGAAAATTCAGAATCCTTG+AGG + chr7_3:51011896-51011915 None:intergenic 30.0%
AAGTGAGAAATTGTAGTAAC+AGG + chr7_3:51012073-51012092 None:intergenic 30.0%
TGTGAGTTTATGGTCATTAA+AGG - chr7_3:51012182-51012201 Msa1108280:intron 30.0%
TGTTAAAACTGTTATCCCAA+AGG - chr7_3:51012215-51012234 Msa1108280:intron 30.0%
CATATCATATTACTGCCTTT+GGG + chr7_3:51012233-51012252 None:intergenic 30.0%
! AGAGGTACGAAAAATAGATA+AGG - chr7_3:51012336-51012355 Msa1108280:CDS 30.0%
AGACCTAAAATTTGTACCAA+AGG - chr7_3:51012415-51012434 Msa1108280:CDS 30.0%
GAAAGAAACAAGAGGAAATT+AGG + chr7_3:51012464-51012483 None:intergenic 30.0%
TTCATGTAGAAAGAAACAAG+AGG + chr7_3:51012472-51012491 None:intergenic 30.0%
GAAAGAAACAACAGGAAATT+AGG + chr7_3:51012630-51012649 None:intergenic 30.0%
TTCATGTAGAAAGAAACAAC+AGG + chr7_3:51012638-51012657 None:intergenic 30.0%
TTCTACATGAATAAAACAGC+AGG - chr7_3:51012481-51012500 Msa1108280:intron 30.0%
!! TAAAAGGGTGCTTACATATA+GGG + chr7_3:51013023-51013042 None:intergenic 30.0%
!! ATAAAAGGGTGCTTACATAT+AGG + chr7_3:51013024-51013043 None:intergenic 30.0%
! CACCCTTTTATTAGATTCAA+AGG - chr7_3:51013033-51013052 Msa1108280:intron 30.0%
CACCCTTTGAATCTAATAAA+AGG + chr7_3:51013039-51013058 None:intergenic 30.0%
! CAAGAGTATATCAATCTTGT+TGG + chr7_3:51013929-51013948 None:intergenic 30.0%
AAGCCAAGAGATCATATAAA+TGG - chr7_3:51014177-51014196 Msa1108280:intron 30.0%
! ACGATGATTGATGGTATTAA+AGG - chr7_3:51014323-51014342 Msa1108280:intron 30.0%
!!! GTAGTGACCTAAATCTTTTT+TGG - chr7_3:51014359-51014378 Msa1108280:intron 30.0%
!!! ACCTAAATCTTTTTTGGTAG+TGG - chr7_3:51014365-51014384 Msa1108280:intron 30.0%
ACCACTACCAAAAAAGATTT+AGG + chr7_3:51014369-51014388 None:intergenic 30.0%
GTACATCATGAAAGATAAAG+GGG + chr7_3:51014497-51014516 None:intergenic 30.0%
GAGTACATCATGAAAGATAA+AGG + chr7_3:51014499-51014518 None:intergenic 30.0%
TCTTCGTTACATTATCTCTT+TGG - chr7_3:51014569-51014588 Msa1108280:intron 30.0%
AGATCAAGATCAAAAAGAGT+CGG + chr7_3:51014614-51014633 None:intergenic 30.0%
ACAAAATTATGCAGAGTAAC+GGG + chr7_3:51014669-51014688 None:intergenic 30.0%
TATATCATGTTGACATGTCT+AGG - chr7_3:51014794-51014813 Msa1108280:intron 30.0%
TACAAGTAGACTTAGATTTG+AGG + chr7_3:51014829-51014848 None:intergenic 30.0%
GTCTACTTGTAAACATTGTT+TGG - chr7_3:51014838-51014857 Msa1108280:intron 30.0%
CGAACAAGTGAAATACTAAT+TGG - chr7_3:51014925-51014944 Msa1108280:intron 30.0%
ACTCGTATTAGTATCTCATA+AGG + chr7_3:51014966-51014985 None:intergenic 30.0%
TGAGATACTAATACGAGTAA+TGG - chr7_3:51014968-51014987 Msa1108280:intron 30.0%
!!! AGAATTTTTCAAGACACATG+TGG + chr7_3:51015315-51015334 None:intergenic 30.0%
ATTACACCACAAAAGTAAGA+TGG - chr7_3:51015437-51015456 Msa1108280:intron 30.0%
!! TGAATTCCATCTTACTTTTG+TGG + chr7_3:51015446-51015465 None:intergenic 30.0%
! AGACAATTGCAATAGTCTTA+GGG + chr7_3:51015567-51015586 None:intergenic 30.0%
AAGACAATTGCAATAGTCTT+AGG + chr7_3:51015568-51015587 None:intergenic 30.0%
AGTCAAGATAAAAATGTGAG+TGG - chr7_3:51015808-51015827 Msa1108280:intron 30.0%
GTCAAGATAAAAATGTGAGT+GGG - chr7_3:51015809-51015828 Msa1108280:intron 30.0%
TCACAAGTAACCCAAAAAAA+AGG - chr7_3:51016241-51016260 Msa1108280:intron 30.0%
AACCCAAAAAAAAGGTTAGT+TGG - chr7_3:51016249-51016268 Msa1108280:intron 30.0%
!! TTGCAAAAGCTTTGGAATTT+AGG - chr7_3:51016875-51016894 Msa1108280:intron 30.0%
!! CATGACTCTAGGAAATTTTA+TGG + chr7_3:51017017-51017036 None:intergenic 30.0%
GGTATTCATATTGTATTGGA+AGG - chr7_3:51017190-51017209 Msa1108280:intron 30.0%
GTTAGAACTTCTGATATCAA+AGG - chr7_3:51017334-51017353 Msa1108280:intron 30.0%
!!! ATCTTGGAGTATTGGTTTTA+TGG + chr7_3:51017377-51017396 None:intergenic 30.0%
AGGTTTGATTGTTCTATCTT+TGG - chr7_3:51017415-51017434 Msa1108280:intron 30.0%
CTTGAAAAGGTGAAATTGAA+TGG - chr7_3:51017446-51017465 Msa1108280:intron 30.0%
CAAAAACAACAAAAGCAAAG+TGG - chr7_3:51017477-51017496 Msa1108280:intron 30.0%
AACACAAACATAACTGTTTC+TGG - chr7_3:51017581-51017600 Msa1108280:intron 30.0%
ATTTGGGAAAATTATAGGCT+AGG + chr7_3:51017952-51017971 None:intergenic 30.0%
!! GAATGGAAAGCATTTGGATT+TGG - chr7_3:51010940-51010959 Msa1108280:CDS 35.0%
CTTGAAAAGGTGAAATTGAG+AGG - chr7_3:51010971-51010990 Msa1108280:CDS 35.0%
AAAGGTGAAATTGAGAGGTT+TGG - chr7_3:51010976-51010995 Msa1108280:CDS 35.0%
! AGGTTTGGAGTTTAACTTCA+AGG - chr7_3:51010991-51011010 Msa1108280:CDS 35.0%
! GTTGATTCTAGGTACAAAAC+GGG + chr7_3:51011109-51011128 None:intergenic 35.0%
!! CGTTGATTCTAGGTACAAAA+CGG + chr7_3:51011110-51011129 None:intergenic 35.0%
AACACAAACACAACTGTTTC+TGG - chr7_3:51011141-51011160 Msa1108280:CDS 35.0%
TGGCAATGGCAAATTTACTT+GGG - chr7_3:51011170-51011189 Msa1108280:CDS 35.0%
AAAAATTGCTGCATGAAGTG+AGG - chr7_3:51011573-51011592 Msa1108280:CDS 35.0%
TTATAAAGGTCGTATCCTCA+AGG - chr7_3:51011878-51011897 Msa1108280:intron 35.0%
GGATGCACACAACAAAAATT+TGG - chr7_3:51011954-51011973 Msa1108280:intron 35.0%
GCATATCATATTACTGCCTT+TGG + chr7_3:51012234-51012253 None:intergenic 35.0%
TGAATCTCTACAATCGAGTT+CGG - chr7_3:51012271-51012290 Msa1108280:CDS 35.0%
TAAACTCACACACAACTTTG+AGG + chr7_3:51012752-51012771 None:intergenic 35.0%
GTGTGTGAGTTTAAATTCAG+TGG - chr7_3:51012759-51012778 Msa1108280:intron 35.0%
!! TTCAAAGGGTGCTTACATAT+AGG - chr7_3:51013048-51013067 Msa1108280:intron 35.0%
!! TCAAAGGGTGCTTACATATA+GGG - chr7_3:51013049-51013068 Msa1108280:intron 35.0%
ACATGTCATAATCAGTGAAG+TGG - chr7_3:51013139-51013158 Msa1108280:intron 35.0%
TCAGTGAAGTGGTCTTTAAT+TGG - chr7_3:51013150-51013169 Msa1108280:intron 35.0%
CAGTGAAGTGGTCTTTAATT+GGG - chr7_3:51013151-51013170 Msa1108280:intron 35.0%
TACCACATATATATTCCGCA+AGG - chr7_3:51013231-51013250 Msa1108280:intron 35.0%
GCTTCAACATATACGTAGTT+TGG + chr7_3:51013602-51013621 None:intergenic 35.0%
TTGGATAACGATATGAACAG+AGG - chr7_3:51013635-51013654 Msa1108280:intron 35.0%
TGGATAACGATATGAACAGA+GGG - chr7_3:51013636-51013655 Msa1108280:intron 35.0%
CTATCATTTACTCCTTGTGT+TGG + chr7_3:51014050-51014069 None:intergenic 35.0%
CAACACAAGGAGTAAATGAT+AGG - chr7_3:51014048-51014067 Msa1108280:intron 35.0%
!! TCAATTCGGTGCATTAGTTT+GGG + chr7_3:51014076-51014095 None:intergenic 35.0%
AAACTAATGCACCGAATTGA+GGG - chr7_3:51014076-51014095 Msa1108280:intron 35.0%
CACATAATAAATCACATGGC+AGG + chr7_3:51014547-51014566 None:intergenic 35.0%
TGTGGCTAAAAAATAGGAAG+TGG - chr7_3:51015262-51015281 Msa1108280:intron 35.0%
AAAATTGTCTGCATGAAGTG+AGG - chr7_3:51015373-51015392 Msa1108280:intron 35.0%
ATTTATAGAAGTCGTACCCT+CGG - chr7_3:51015676-51015695 Msa1108280:intron 35.0%
AGAAAATTCAAAATCCCCGA+GGG + chr7_3:51015695-51015714 None:intergenic 35.0%
GGATGCAGATGACAAAAATT+TGG - chr7_3:51015758-51015777 Msa1108280:intron 35.0%
! TAAATTTTACCTTCCCACTC+AGG - chr7_3:51016010-51016029 Msa1108280:intron 35.0%
TACAACAGACTAAAATCAGC+GGG + chr7_3:51016110-51016129 None:intergenic 35.0%
CTACAACAGACTAAAATCAG+CGG + chr7_3:51016111-51016130 None:intergenic 35.0%
TACGTTTCAAATTCCTCTGT+AGG + chr7_3:51016204-51016223 None:intergenic 35.0%
AAAGAGCAATAAGCCAATGA+AGG - chr7_3:51016461-51016480 Msa1108280:intron 35.0%
ATTCCAAGACTTACCTTCAT+TGG + chr7_3:51016477-51016496 None:intergenic 35.0%
AATGAAGGTAAGTCTTGGAA+TGG - chr7_3:51016476-51016495 Msa1108280:intron 35.0%
!! TATGTTCTGAAGTTGAACAC+TGG - chr7_3:51016510-51016529 Msa1108280:intron 35.0%
AAATCAGTGTTTCTCCCAAT+CGG + chr7_3:51016593-51016612 None:intergenic 35.0%
!! TGAGTATATTGATTCTCCAG+TGG + chr7_3:51016677-51016696 None:intergenic 35.0%
! ATTCCAAAGCTTTTGCAACT+AGG + chr7_3:51016873-51016892 None:intergenic 35.0%
!! ATCTAGTTCTACATGACTCT+AGG + chr7_3:51017028-51017047 None:intergenic 35.0%
! GCAAAACTAATCGACTCTAT+AGG - chr7_3:51017169-51017188 Msa1108280:intron 35.0%
GATGAAAAACCAAGAGCTAA+TGG - chr7_3:51017718-51017737 Msa1108280:CDS 35.0%
!! TGGTGTGAATGGAAAGCATT+TGG - chr7_3:51010934-51010953 Msa1108280:CDS 40.0%
GTGGCAATGGCAAATTTACT+TGG - chr7_3:51011169-51011188 Msa1108280:CDS 40.0%
!! TGCTGTGGATCATTTTTGGA+AGG - chr7_3:51011260-51011279 Msa1108280:CDS 40.0%
TCATCAATTTCCGACAACAG+CGG - chr7_3:51011799-51011818 Msa1108280:intron 40.0%
!!! CAAGTTTTTTCCGCTGTTGT+CGG + chr7_3:51011812-51011831 None:intergenic 40.0%
CAACAGCGGAAAAAACTTGA+TGG - chr7_3:51011813-51011832 Msa1108280:intron 40.0%
!! TCTAGAAGTACTAGCTCAAC+TGG - chr7_3:51012674-51012693 Msa1108280:CDS 40.0%
!! CTAGAAGTACTAGCTCAACT+GGG - chr7_3:51012675-51012694 Msa1108280:CDS 40.0%
CAATAATGAGCAGCAAGTGA+TGG - chr7_3:51013107-51013126 Msa1108280:intron 40.0%
GACCTTGCGGAATATATATG+TGG + chr7_3:51013236-51013255 None:intergenic 40.0%
TATATATTCCGCAAGGTCTC+AGG - chr7_3:51013238-51013257 Msa1108280:intron 40.0%
ATTCTCTCCAGTGCCAATTT+GGG - chr7_3:51013265-51013284 Msa1108280:intron 40.0%
GCTAAATAGTCCACCCAAAT+TGG + chr7_3:51013281-51013300 None:intergenic 40.0%
ACTACGTATATGTTGAAGCG+AGG - chr7_3:51013603-51013622 Msa1108280:intron 40.0%
! TGAAGCGAGGTGCAATATTT+TGG - chr7_3:51013616-51013635 Msa1108280:intron 40.0%
AAGGAGTCATATCCAACACA+AGG - chr7_3:51014035-51014054 Msa1108280:intron 40.0%
!! CTCAATTCGGTGCATTAGTT+TGG + chr7_3:51014077-51014096 None:intergenic 40.0%
CAAACTAATGCACCGAATTG+AGG - chr7_3:51014075-51014094 Msa1108280:intron 40.0%
ACAAACACACTCCCTCAATT+CGG + chr7_3:51014090-51014109 None:intergenic 40.0%
GTAGTGGTATTAAAGGCGAT+TGG - chr7_3:51014381-51014400 Msa1108280:intron 40.0%
CGATTGGAAGTCTGAAGATA+GGG - chr7_3:51014397-51014416 Msa1108280:intron 40.0%
TCATGAAAGATAAAGGGGCT+AGG + chr7_3:51014492-51014511 None:intergenic 40.0%
GTATGTTGTGTCCAGATTCA+TGG - chr7_3:51014690-51014709 Msa1108280:intron 40.0%
GGCAAATAGTGCATTGTGAT+TGG + chr7_3:51015228-51015247 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG - chr7_3:51015236-51015255 Msa1108280:intron 40.0%
CTATTTGCCACAATTCAAGG+AGG - chr7_3:51015239-51015258 Msa1108280:intron 40.0%
! AGGAGGTGTGGCTAAAAAAT+AGG - chr7_3:51015256-51015275 Msa1108280:intron 40.0%
! CAAATTTTTGCCGCTGTTGT+CGG + chr7_3:51015612-51015631 None:intergenic 40.0%
CAACAGCGGCAAAAATTTGA+TGG - chr7_3:51015613-51015632 Msa1108280:intron 40.0%
TTTATAGAAGTCGTACCCTC+GGG - chr7_3:51015677-51015696 Msa1108280:intron 40.0%
CAGAAAATTCAAAATCCCCG+AGG + chr7_3:51015696-51015715 None:intergenic 40.0%
GTATTAGGTAGTTTCCACCA+TGG + chr7_3:51015970-51015989 None:intergenic 40.0%
ATAAAAGTTCCTGAGTGGGA+AGG + chr7_3:51016022-51016041 None:intergenic 40.0%
TTTCACTAGATATTGCGGGT+GGG + chr7_3:51016070-51016089 None:intergenic 40.0%
! TTTTCACTAGATATTGCGGG+TGG + chr7_3:51016071-51016090 None:intergenic 40.0%
TAGTCTGTTGTAGAGCTTAG+AGG - chr7_3:51016118-51016137 Msa1108280:intron 40.0%
TGTTGTAGAGCTTAGAGGAA+AGG - chr7_3:51016123-51016142 Msa1108280:intron 40.0%
ATGGTGAAGATAGTTCCAAC+TGG - chr7_3:51016164-51016183 Msa1108280:intron 40.0%
TGGTGAAGATAGTTCCAACT+GGG - chr7_3:51016165-51016184 Msa1108280:intron 40.0%
AATTCCTCTGTAGGAAATCG+TGG + chr7_3:51016195-51016214 None:intergenic 40.0%
TTGGGTTACTTGTGAGCTTT+GGG + chr7_3:51016236-51016255 None:intergenic 40.0%
! TTTGGGTTACTTGTGAGCTT+TGG + chr7_3:51016237-51016256 None:intergenic 40.0%
GTGCATATATATGCTTGTCC+AGG - chr7_3:51016399-51016418 Msa1108280:intron 40.0%
CATATATATGCTTGTCCAGG+TGG - chr7_3:51016402-51016421 Msa1108280:intron 40.0%
GCTGTAGATCAGGTGTATTT+CGG - chr7_3:51016432-51016451 Msa1108280:intron 40.0%
TAGATCAGGTGTATTTCGGT+TGG - chr7_3:51016436-51016455 Msa1108280:intron 40.0%
AAGCCAATGAAGGTAAGTCT+TGG - chr7_3:51016471-51016490 Msa1108280:intron 40.0%
GTAAGTCTTGGAATGGAGAA+TGG - chr7_3:51016483-51016502 Msa1108280:intron 40.0%
TTGCCTAGTTGCAAAAGCTT+TGG - chr7_3:51016867-51016886 Msa1108280:intron 40.0%
TGATGTCTTCCATGAGCAAT+AGG + chr7_3:51017117-51017136 None:intergenic 40.0%
!! CCAGTTTAGTCTTGTTGATC+TGG + chr7_3:51017279-51017298 None:intergenic 40.0%
CCAGATCAACAAGACTAAAC+TGG - chr7_3:51017276-51017295 Msa1108280:intron 40.0%
AGTGGTGTAATCTAACTGCT+TGG - chr7_3:51017495-51017514 Msa1108280:intron 40.0%
GTGGTGTAATCTAACTGCTT+GGG - chr7_3:51017496-51017515 Msa1108280:intron 40.0%
!! GTTGTTTCTAGGTGCAAAAC+GGG + chr7_3:51017549-51017568 None:intergenic 40.0%
!! CGTTGTTTCTAGGTGCAAAA+CGG + chr7_3:51017550-51017569 None:intergenic 40.0%
TGGCGATGGCAAATTTACTT+GGG - chr7_3:51017610-51017629 Msa1108280:intron 40.0%
! GGAAAAACTCCATTAGCTCT+TGG + chr7_3:51017730-51017749 None:intergenic 40.0%
TTGCAACGAAGCTGTAATTG+CGG + chr7_3:51017886-51017905 None:intergenic 40.0%
CAATTACAGCTTCGTTGCAA+CGG - chr7_3:51017886-51017905 Msa1108280:intron 40.0%
CATCATCTGCAGAACAGATC+AGG + chr7_3:51011215-51011234 None:intergenic 45.0%
TGCATGAAGTGAGGCTCTTT+CGG - chr7_3:51011582-51011601 Msa1108280:CDS 45.0%
GGGGTTGAGATCAATGAAAC+GGG + chr7_3:51012147-51012166 None:intergenic 45.0%
GGGGGTTGAGATCAATGAAA+CGG + chr7_3:51012148-51012167 None:intergenic 45.0%
TGGGAAATGCCGAAATTGCA+AGG - chr7_3:51012694-51012713 Msa1108280:CDS 45.0%
AAATGCCGAAATTGCAAGGC+CGG - chr7_3:51012698-51012717 Msa1108280:CDS 45.0%
TGCTTACATATAGGGACGGA+GGG + chr7_3:51013057-51013076 None:intergenic 45.0%
! AGGGTGCTTACATATAGGGA+CGG + chr7_3:51013053-51013072 None:intergenic 45.0%
! AGGGTGCTTACATATAGGGA+CGG - chr7_3:51013053-51013072 Msa1108280:intron 45.0%
TGCTTACATATAGGGACGGA+GGG - chr7_3:51013057-51013076 Msa1108280:intron 45.0%
AATGAGCAGCAAGTGATGGT+CGG - chr7_3:51013111-51013130 Msa1108280:intron 45.0%
GATTCTCTCCAGTGCCAATT+TGG - chr7_3:51013264-51013283 Msa1108280:intron 45.0%
GCGATTGGAAGTCTGAAGAT+AGG - chr7_3:51014396-51014415 Msa1108280:intron 45.0%
AAAGGGGCTAGGATGAGAAA+AGG + chr7_3:51014481-51014500 None:intergenic 45.0%
! ACTGTGAGCAGTCATTGACT+AGG - chr7_3:51014873-51014892 Msa1108280:intron 45.0%
TGCATGAAGTGAGGCTCTTT+CGG - chr7_3:51011582-51011601 Msa1108280:CDS 45.0%
TCGACAATTTCCGACAACAG+CGG - chr7_3:51015599-51015618 Msa1108280:intron 45.0%
TTATAGAAGTCGTACCCTCG+GGG - chr7_3:51015678-51015697 Msa1108280:intron 45.0%
! AGTGCCAATTTTACCCTCCA+TGG - chr7_3:51015950-51015969 Msa1108280:intron 45.0%
TCCACCATGGAGGGTAAAAT+TGG + chr7_3:51015957-51015976 None:intergenic 45.0%
TAGGTAGTTTCCACCATGGA+GGG + chr7_3:51015966-51015985 None:intergenic 45.0%
TTAGGTAGTTTCCACCATGG+AGG + chr7_3:51015967-51015986 None:intergenic 45.0%
TAGAGCTTAGAGGAAAGGTG+TGG - chr7_3:51016128-51016147 Msa1108280:intron 45.0%
! TAGAGGAAAGGTGTGGAGAA+TGG - chr7_3:51016135-51016154 Msa1108280:intron 45.0%
GTGTGGAGAATGGTAGAGAA+TGG - chr7_3:51016145-51016164 Msa1108280:intron 45.0%
GAAGATAGTTCCAACTGGGA+CGG - chr7_3:51016169-51016188 Msa1108280:intron 45.0%
!! CCAGTGGCGTTTTATTCCAT+AGG + chr7_3:51016661-51016680 None:intergenic 45.0%
CCTATGGAATAAAACGCCAC+TGG - chr7_3:51016658-51016677 Msa1108280:intron 45.0%
GTTCGTAGACCTATTGCTCA+TGG - chr7_3:51017105-51017124 Msa1108280:intron 45.0%
!! CGGCTCTTATCGTTGTTTCT+AGG + chr7_3:51017560-51017579 None:intergenic 45.0%
!! ATAACTGTTTCTGGTCAGCG+TGG - chr7_3:51017590-51017609 Msa1108280:intron 45.0%
GTGGCGATGGCAAATTTACT+TGG - chr7_3:51017609-51017628 Msa1108280:intron 45.0%
CATCATCTGCAGAACAGATC+AGG + chr7_3:51011215-51011234 None:intergenic 45.0%
TCATTCACATGCCGTCATCA+TGG - chr7_3:51017839-51017858 Msa1108280:CDS 45.0%
CATTCACATGCCGTCATCAT+GGG - chr7_3:51017840-51017859 Msa1108280:CDS 45.0%
TTAACAGCCACCCATGATGA+CGG + chr7_3:51017853-51017872 None:intergenic 45.0%
!! TTTATATTAATAACATAAAA+CGG - chr7_3:51013536-51013555 Msa1108280:intron 5.0%
!!! AAATATTTACTTATTTTAAT+TGG + chr7_3:51013750-51013769 None:intergenic 5.0%
!!! TAAGTAAATTAATTTTTTTT+AGG - chr7_3:51015029-51015048 Msa1108280:intron 5.0%
!!! AAGTAAATTAATTTTTTTTA+GGG - chr7_3:51015030-51015049 Msa1108280:intron 5.0%
!! ATGAAAAATAATAAAATTTA+TGG + chr7_3:51015478-51015497 None:intergenic 5.0%
!!! AAAAATTATTTTGAATAATA+AGG + chr7_3:51015886-51015905 None:intergenic 5.0%
!! AGATTTATTTATTATAAATA+AGG + chr7_3:51016817-51016836 None:intergenic 5.0%
!!! ATTAATATTTTTGAATTATA+CGG + chr7_3:51016966-51016985 None:intergenic 5.0%
!! CGGCTCTCATCGTTGATTCT+AGG + chr7_3:51011120-51011139 None:intergenic 50.0%
!! ACAACTGTTTCTGGTCAGCG+TGG - chr7_3:51011150-51011169 Msa1108280:CDS 50.0%
!! ACACACAACTTTGAGGTCCC+AGG + chr7_3:51012745-51012764 None:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG + chr7_3:51013056-51013075 None:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG - chr7_3:51013056-51013075 Msa1108280:intron 50.0%
! AGGGAGTATGATGTGGTCTG+CGG - chr7_3:51013076-51013095 Msa1108280:intron 50.0%
GACGTGAAGTGTGCATCACA+TGG + chr7_3:51013190-51013209 None:intergenic 50.0%
GAATCGAACCTGAGACCTTG+CGG + chr7_3:51013249-51013268 None:intergenic 50.0%
TAGTCCACCCAAATTGGCAC+TGG + chr7_3:51013275-51013294 None:intergenic 50.0%
TGTCTGTGTGTGTGTGTGTG+TGG + chr7_3:51013329-51013348 None:intergenic 50.0%
TGCCACAATTCAAGGAGGTG+TGG - chr7_3:51015244-51015263 Msa1108280:intron 50.0%
AGCCACACCTCCTTGAATTG+TGG + chr7_3:51015249-51015268 None:intergenic 50.0%
! GCCAATTTTACCCTCCATGG+TGG - chr7_3:51015953-51015972 Msa1108280:intron 50.0%
! TGGTAGCGTTGCTGTAGATC+AGG - chr7_3:51016422-51016441 Msa1108280:intron 50.0%
AGCAGATATGCTTCGCCGAT+TGG - chr7_3:51016575-51016594 Msa1108280:intron 50.0%
! GCAGATATGCTTCGCCGATT+GGG - chr7_3:51016576-51016595 Msa1108280:intron 50.0%
!! GTTTCTGGTCAGCGTGGCAA+TGG - chr7_3:51011156-51011175 Msa1108280:CDS 55.0%
GACGTCCGGCCTTGCAATTT+CGG + chr7_3:51012706-51012725 None:intergenic 55.0%
TGAGGTCCCAGGTTCGAACT+CGG + chr7_3:51012734-51012753 None:intergenic 55.0%
GTATGATGTGGTCTGCGGTG+TGG - chr7_3:51013081-51013100 Msa1108280:intron 55.0%
CTCTCCAGTGCCAATTTGGG+TGG - chr7_3:51013268-51013287 Msa1108280:intron 55.0%
ACGGCCACGATTTCCTACAG+AGG - chr7_3:51016188-51016207 Msa1108280:intron 55.0%
TCTACAGCAACGCTACCACC+TGG + chr7_3:51016420-51016439 None:intergenic 55.0%
TCACATGCCGTCATCATGGG+TGG - chr7_3:51017843-51017862 Msa1108280:CDS 55.0%
TCGTGACCCGAGTTCGAACC+TGG - chr7_3:51012724-51012743 Msa1108280:CDS 60.0%
CGTGACCCGAGTTCGAACCT+GGG - chr7_3:51012725-51012744 Msa1108280:CDS 60.0%
GAGGTCCCAGGTTCGAACTC+GGG + chr7_3:51012733-51012752 None:intergenic 60.0%
! GGGACGGAGGGAGTATGATG+TGG - chr7_3:51013069-51013088 Msa1108280:intron 60.0%
CGGGTGGGAACGTAGTTTCC+CGG + chr7_3:51016055-51016074 None:intergenic 60.0%
GAAATCGTGGCCGTCCCAGT+TGG + chr7_3:51016182-51016201 None:intergenic 60.0%
!! GTTTCTGGTCAGCGTGGCGA+TGG - chr7_3:51017596-51017615 Msa1108280:intron 60.0%
CGAACTCGGGTCACGACGTC+CGG + chr7_3:51012720-51012739 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 51010908 51017973 51010908 ID=Msa1108280;Name=Msa1108280
chr7_3 mRNA 51010908 51017973 51010908 ID=Msa1108280-mRNA-1;Parent=Msa1108280;Name=Msa1108280-mRNA-1;_AED=0.14;_eAED=0.18;_QI=0|0.2|0|1|0.2|0|6|0|435
chr7_3 exon 51017889 51017973 51017889 ID=Msa1108280-mRNA-1:exon:10491;Parent=Msa1108280-mRNA-1
chr7_3 exon 51017648 51017868 51017648 ID=Msa1108280-mRNA-1:exon:10490;Parent=Msa1108280-mRNA-1
chr7_3 exon 51012619 51012760 51012619 ID=Msa1108280-mRNA-1:exon:10489;Parent=Msa1108280-mRNA-1
chr7_3 exon 51012242 51012460 51012242 ID=Msa1108280-mRNA-1:exon:10488;Parent=Msa1108280-mRNA-1
chr7_3 exon 51011548 51011669 51011548 ID=Msa1108280-mRNA-1:exon:10487;Parent=Msa1108280-mRNA-1
chr7_3 exon 51010908 51011426 51010908 ID=Msa1108280-mRNA-1:exon:10486;Parent=Msa1108280-mRNA-1
chr7_3 CDS 51017889 51017973 51017889 ID=Msa1108280-mRNA-1:cds;Parent=Msa1108280-mRNA-1
chr7_3 CDS 51017648 51017868 51017648 ID=Msa1108280-mRNA-1:cds;Parent=Msa1108280-mRNA-1
chr7_3 CDS 51012619 51012760 51012619 ID=Msa1108280-mRNA-1:cds;Parent=Msa1108280-mRNA-1
chr7_3 CDS 51012242 51012460 51012242 ID=Msa1108280-mRNA-1:cds;Parent=Msa1108280-mRNA-1
chr7_3 CDS 51011548 51011669 51011548 ID=Msa1108280-mRNA-1:cds;Parent=Msa1108280-mRNA-1
chr7_3 CDS 51010908 51011426 51010908 ID=Msa1108280-mRNA-1:cds;Parent=Msa1108280-mRNA-1
Gene Sequence

>Msa1108280

AGTTTATGTGGTTTGTTATTTATGCTTGGTGTGAATGGAAAGCATTTGGATTTGGATCATATTCTTGAAAAGGTGAAATTGAGAGGTGAAATTGAACGGTTGCATATCACAAAAACAACAAAAGCAAAATGGTGTAATCTAATTGCTTGGGAACATCATAAAAAATACAATTATTTATCCCGTTTTGTACCTAGAATCAACGATGAGAGCCGAAACACAAACACAACTGTTTCTGGTCAGCGTGGCAATGGCAAATTTACTTGGGCTGCTTTGATTTTCAACGTCCTGATCTGTTCTGCAGATGATTCTGTTGTAGAGCTTAGAGGAAAGGTGTGGAGAATGGTAGAGAATGGTGAAGATAGTTCCAACTGGGACGGCCACGATTTCCTACAGAGGAATTTGAAACGTAGAAAAGAAACCCAAAGCTCACAAGTAACCCAAAAAAAAGGTGGTAGCGTTGCTGTAGATCAGGTGTATTTCGGTTGGTCAAAGAGCAATAAGCCAATGAAGGTAAGTCTTGGAATGGAGAATGGAGAATATGTTCTGAAGTTGAACACTGGTATGACAGATCAAGCACAAACTGCAGCTATGTTGTCGTCTCAAGCAGATATGCTTCGCCGATTGGGAGAAACACTGATTTTCCTATCTGAGTTTTTTAAAAATTTAGGTTGCTCCCGTATAATCAACGAAATAGATTTTATTATTCGAGGAAGCTACGTCGCTGACATCAACCAGATCAACAAGACTAAACTGGCAAAAACTATGTTAATGAACAATTATTTTTTTTCTGTGAAATTGAATGGTTGCATCACAAAAACAACAAAAGCAAAGTGGTGTAATCTAACTGCTTGGGAACATCATAAAAAGTACAATGATTTTTCCCGTTTTGCACCTAGAAACAACGATAAGAGCCGAAACACAAACATAACTGTTTCTGGTCAGCGTGGCGATGGCAAATTTACTTGGGCTGCTTTGATTTTCAACGTCCTGATCTGTTCTGCAGATGATGTCCAACTTCTCAAAAACAAGAAAATTGTTGTGGATCATTTAAAGATGAAAAACCAAGAGCTAATGGAGTTTTTCCACACAATAGCAAATATTCAAATGGTTGATGACATCAACAATTACTTCGACACATTTTTCATTAAACGAATCTGGAAAATAGTGTCGAGTTCATTCACATGCCGTCATCATGGGTGGCTGTTAATATTTATGAACCGCAATTACAGCTTCGTTGCAACGGTTCTCTCTATTCTCACTGTTGTGCTGACAGTTTATGCAATCCTAGCCTATAATTTTCCCAAATAA

Protein sequence

>Msa1108280

SLCGLLFMLGVNGKHLDLDHILEKVKLRGEIERLHITKTTKAKWCNLIAWEHHKKYNYLSRFVPRINDESRNTNTTVSGQRGNGKFTWAALIFNVLICSADDSVVELRGKVWRMVENGEDSSNWDGHDFLQRNLKRRKETQSSQVTQKKGGSVAVDQVYFGWSKSNKPMKVSLGMENGEYVLKLNTGMTDQAQTAAMLSSQADMLRRLGETLIFLSEFFKNLGCSRIINEIDFIIRGSYVADINQINKTKLAKTMLMNNYFFSVKLNGCITKTTKAKWCNLTAWEHHKKYNDFSRFAPRNNDKSRNTNITVSGQRGDGKFTWAALIFNVLICSADDVQLLKNKKIVVDHLKMKNQELMEFFHTIANIQMVDDINNYFDTFFIKRIWKIVSSSFTCRHHGWLLIFMNRNYSFVATVLSILTVVLTVYAILAYNFPK*