AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1424450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1424450 MtrunA17_Chr8g0390301 93.600 125 7 1 1 125 213 336 3.29e-74 223
Msa1424450 MtrunA17_Chr6g0486111 76.800 125 24 2 1 125 204 323 1.94e-63 196
Msa1424450 MtrunA17_Chr2g0331431 64.286 126 41 2 1 124 206 329 1.20e-50 163
Msa1424450 MtrunA17_Chr1g0207771 43.697 119 47 3 1 119 172 270 3.18e-22 88.6
Msa1424450 MtrunA17_Chr2g0280631 37.705 122 45 3 1 122 321 411 5.38e-19 81.3
Msa1424450 MtrunA17_Chr3g0141841 37.097 124 48 3 1 122 357 452 1.44e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1424450 AT4G29100.1 64.394 132 36 4 1 125 280 407 2.08e-53 172
Msa1424450 AT2G20100.1 61.069 131 41 3 1 125 236 362 1.89e-47 156
Msa1424450 AT2G20100.3 45.198 177 41 4 1 125 236 408 2.40e-38 133
Msa1424450 AT4G29100.2 64.706 68 19 2 1 67 280 343 3.68e-22 89.7
Msa1424450 AT2G20100.4 59.701 67 23 1 1 67 236 298 3.40e-18 78.6
Msa1424450 AT2G20100.2 59.701 67 23 1 1 67 236 298 3.40e-18 78.6
Msa1424450 AT1G61660.4 37.288 118 45 2 5 122 279 367 7.51e-18 78.2
Msa1424450 AT1G61660.3 37.705 122 47 2 1 122 294 386 8.02e-17 75.5
Msa1424450 AT1G61660.7 37.705 122 47 2 1 122 297 389 8.18e-17 75.5
Msa1424450 AT1G61660.1 37.705 122 47 2 1 122 297 389 8.18e-17 75.5
Msa1424450 AT1G27660.1 40.152 132 42 5 1 123 349 452 1.04e-16 75.1
Msa1424450 AT1G49830.2 36.667 120 42 2 1 120 140 225 1.11e-15 70.9
Msa1424450 AT1G49830.1 36.667 120 42 2 1 120 141 226 1.12e-15 70.9
Msa1424450 AT1G05710.9 38.333 120 54 4 1 119 46 146 1.96e-14 66.2
Msa1424450 AT1G05710.8 38.333 120 54 4 1 119 46 146 1.96e-14 66.2
Msa1424450 AT1G05710.13 38.333 120 54 4 1 119 54 154 2.26e-14 66.2
Msa1424450 AT1G05710.2 38.333 120 54 4 1 119 54 154 2.26e-14 66.2
Msa1424450 AT1G05710.10 38.333 120 54 4 1 119 54 154 2.26e-14 66.2
Msa1424450 AT1G05710.7 38.333 120 54 4 1 119 54 154 2.26e-14 66.2

Find 43 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGATTTAATGTAGATTTA+TGG 0.133124 tig0025690:-69446 Msa1424450:three_prime_UTR
CACTATTCATTACCTCAATT+TGG 0.188016 tig0025690:+70650 None:intergenic
TAATTGGATTTACAATTAAT+TGG 0.220168 tig0025690:-69727 Msa1424450:three_prime_UTR
GGGGATTTCAGTAGATTAAT+TGG 0.223123 tig0025690:-69743 Msa1424450:exon
AGCATATATTCATAAATATT+TGG 0.241615 tig0025690:-69701 Msa1424450:three_prime_UTR
GATTATTGGGCTCCTGCTTT+TGG 0.257313 tig0025690:-69768 Msa1424450:CDS
GTGACAATGGTGCTGATTAT+TGG 0.291540 tig0025690:-69782 Msa1424450:CDS
CCTGATCCATTTCCCAAGTA+TGG 0.292405 tig0025690:+70519 None:intergenic
TATACCTGACCAGGGTCTTC+AGG 0.304733 tig0025690:+70283 None:intergenic
GGCACTTAGCTTACCATACT+TGG 0.309481 tig0025690:-70532 Msa1424450:CDS
CATACAAAGAGGCAATTAAT+TGG 0.333520 tig0025690:-69675 Msa1424450:three_prime_UTR
ATTCCATTAGCTTAATTTAG+AGG 0.334453 tig0025690:-69476 Msa1424450:three_prime_UTR
GCTATATATCAAATTATCTA+AGG 0.342905 tig0025690:-69618 Msa1424450:three_prime_UTR
TGACCTCTAAATTAAGCTAA+TGG 0.354110 tig0025690:+69473 None:intergenic
AGCTTACCATACTTGGGAAA+TGG 0.367203 tig0025690:-70525 Msa1424450:CDS
AATAATTAATGTTAGGTTCA+AGG 0.372540 tig0025690:-70325 Msa1424450:intron
TCTGTCTTATTAGAATCTAT+TGG 0.375173 tig0025690:-70694 Msa1424450:CDS
CCATACTTGGGAAATGGATC+AGG 0.409735 tig0025690:-70519 Msa1424450:CDS
TGACAATGGTGCTGATTATT+GGG 0.428948 tig0025690:-69781 Msa1424450:CDS
GATTGCTCATGATGCTATGC+AGG 0.429935 tig0025690:-69593 Msa1424450:three_prime_UTR
GAGAAAGGCAGTTAGTGAAC+AGG 0.429996 tig0025690:-70031 Msa1424450:intron
AACACAATCCTCTGCTCCTC+AGG 0.430043 tig0025690:+69838 None:intergenic
TTACCTCAATTTGGCTCTGA+AGG 0.445293 tig0025690:+70659 None:intergenic
ATACCTGACCAGGGTCTTCA+GGG 0.453388 tig0025690:+70284 None:intergenic
GAGGAGCAGAGGATTGTGTT+TGG 0.456499 tig0025690:-69835 Msa1424450:CDS
CAAATTAATGATTCTTAACA+AGG 0.478398 tig0025690:+69528 None:intergenic
TGAAAACTGTTTGAAGAGAA+AGG 0.488450 tig0025690:-70046 Msa1424450:CDS
ATTCCCTGAAGACCCTGGTC+AGG 0.494530 tig0025690:-70287 Msa1424450:intron
ATTCCTTCAGAGCCAAATTG+AGG 0.519370 tig0025690:-70662 Msa1424450:intron
ACTTGCATTGTGCATGACAC+TGG 0.554874 tig0025690:+69810 None:intergenic
TGTTTATTCCCTGAAGACCC+TGG 0.564013 tig0025690:-70292 Msa1424450:CDS
GCACTTAGCTTACCATACTT+GGG 0.565697 tig0025690:-70531 Msa1424450:CDS
AAGAAAGACCTGAGGAGCAG+AGG 0.569148 tig0025690:-69846 Msa1424450:CDS
ACAAAGAGGCAATTAATTGG+TGG 0.574036 tig0025690:-69672 Msa1424450:three_prime_UTR
GAATACATATATACCTGACC+AGG 0.598652 tig0025690:+70274 None:intergenic
GTGTCATGCACAATGCAAGT+TGG 0.614481 tig0025690:-69807 Msa1424450:CDS
ATTGCTCATGATGCTATGCA+GGG 0.621849 tig0025690:-69592 Msa1424450:three_prime_UTR
CATACTTGGGAAATGGATCA+GGG 0.623056 tig0025690:-70518 Msa1424450:CDS
AAATTAATGATTCTTAACAA+GGG 0.624155 tig0025690:+69529 None:intergenic
ATGCAAGTTGGAAGTGACAA+TGG 0.664396 tig0025690:-69795 Msa1424450:CDS
AATAGATTCTAATAAGACAG+AGG 0.674138 tig0025690:+70696 None:intergenic
ATATTTGGAAGCATACAAAG+AGG 0.703645 tig0025690:-69686 Msa1424450:three_prime_UTR
AATACATATATACCTGACCA+GGG 0.715304 tig0025690:+70275 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTATTAACAAATTATTGA+CGG + tig0025690:70211-70230 None:intergenic 15.0%
!! TAATTGGATTTACAATTAAT+TGG - tig0025690:70394-70413 Msa1424450:intron 15.0%
!! AGCATATATTCATAAATATT+TGG - tig0025690:70420-70439 Msa1424450:intron 15.0%
!! AAATTAATGATTCTTAACAA+GGG + tig0025690:70595-70614 None:intergenic 15.0%
!! CATTATTAACAAATTATTGA+CGG + tig0025690:70211-70230 None:intergenic 15.0%
!! TAATTGGATTTACAATTAAT+TGG - tig0025690:70394-70413 Msa1424450:intron 15.0%
!! AGCATATATTCATAAATATT+TGG - tig0025690:70420-70439 Msa1424450:intron 15.0%
!! AAATTAATGATTCTTAACAA+GGG + tig0025690:70595-70614 None:intergenic 15.0%
!!! TTATTCTTCTTTGTTTCATT+GGG + tig0025690:69684-69703 None:intergenic 20.0%
!!! ATTATTCTTCTTTGTTTCAT+TGG + tig0025690:69685-69704 None:intergenic 20.0%
!! CAACATAATTACAAGTTAAT+TGG + tig0025690:69755-69774 None:intergenic 20.0%
!! AATAATTAATGTTAGGTTCA+AGG - tig0025690:69796-69815 Msa1424450:CDS 20.0%
!!! TATATATGTATTCTTTTCCT+TGG - tig0025690:69857-69876 Msa1424450:CDS 20.0%
!!! CATTGTATTTTCTTACTTTA+TGG - tig0025690:70038-70057 Msa1424450:CDS 20.0%
!! GCTATATATCAAATTATCTA+AGG - tig0025690:70503-70522 Msa1424450:CDS 20.0%
!!! ACTTGCATACATTTTTATTA+AGG + tig0025690:70557-70576 None:intergenic 20.0%
!! CAAATTAATGATTCTTAACA+AGG + tig0025690:70596-70615 None:intergenic 20.0%
!! CTAGATTTAATGTAGATTTA+TGG - tig0025690:70675-70694 Msa1424450:CDS 20.0%
!!! TTATTCTTCTTTGTTTCATT+GGG + tig0025690:69684-69703 None:intergenic 20.0%
!!! ATTATTCTTCTTTGTTTCAT+TGG + tig0025690:69685-69704 None:intergenic 20.0%
!! CAACATAATTACAAGTTAAT+TGG + tig0025690:69755-69774 None:intergenic 20.0%
!! AATAATTAATGTTAGGTTCA+AGG - tig0025690:69796-69815 Msa1424450:CDS 20.0%
!!! TATATATGTATTCTTTTCCT+TGG - tig0025690:69857-69876 Msa1424450:CDS 20.0%
!!! CATTGTATTTTCTTACTTTA+TGG - tig0025690:70038-70057 Msa1424450:CDS 20.0%
!! GCTATATATCAAATTATCTA+AGG - tig0025690:70503-70522 Msa1424450:CDS 20.0%
!!! ACTTGCATACATTTTTATTA+AGG + tig0025690:70557-70576 None:intergenic 20.0%
!! CAAATTAATGATTCTTAACA+AGG + tig0025690:70596-70615 None:intergenic 20.0%
!! CTAGATTTAATGTAGATTTA+TGG - tig0025690:70675-70694 Msa1424450:CDS 20.0%
! AATAGATTCTAATAAGACAG+AGG + tig0025690:69428-69447 None:intergenic 25.0%
!! TCTGTCTTATTAGAATCTAT+TGG - tig0025690:69427-69446 Msa1424450:three_prime_UTR 25.0%
! TGAAAATTCCTCAAACTTAA+TGG + tig0025690:69885-69904 None:intergenic 25.0%
!! AAGTTTGAGGAATTTTCATT+TGG - tig0025690:69887-69906 Msa1424450:intron 25.0%
! TAGTATATGATAACTTAAGC+TGG + tig0025690:69986-70005 None:intergenic 25.0%
!!! TTTTGACTGTCTTGTAAATT+AGG - tig0025690:70235-70254 Msa1424450:intron 25.0%
!! ATTCCATTAGCTTAATTTAG+AGG - tig0025690:70645-70664 Msa1424450:intron 25.0%
! AATAGATTCTAATAAGACAG+AGG + tig0025690:69428-69447 None:intergenic 25.0%
!! TCTGTCTTATTAGAATCTAT+TGG - tig0025690:69427-69446 Msa1424450:three_prime_UTR 25.0%
! TGAAAATTCCTCAAACTTAA+TGG + tig0025690:69885-69904 None:intergenic 25.0%
!! AAGTTTGAGGAATTTTCATT+TGG - tig0025690:69887-69906 Msa1424450:intron 25.0%
! TAGTATATGATAACTTAAGC+TGG + tig0025690:69986-70005 None:intergenic 25.0%
!!! TTTTGACTGTCTTGTAAATT+AGG - tig0025690:70235-70254 Msa1424450:intron 25.0%
!! ATTCCATTAGCTTAATTTAG+AGG - tig0025690:70645-70664 Msa1424450:intron 25.0%
CACTATTCATTACCTCAATT+TGG + tig0025690:69474-69493 None:intergenic 30.0%
ATTGAGGTAATGAATAGTGA+TGG - tig0025690:69475-69494 Msa1424450:three_prime_UTR 30.0%
AATACATATATACCTGACCA+GGG + tig0025690:69849-69868 None:intergenic 30.0%
TGAAAACTGTTTGAAGAGAA+AGG - tig0025690:70075-70094 Msa1424450:intron 30.0%
AAAAAGAAAAGAAAGACCTG+AGG - tig0025690:70267-70286 Msa1424450:intron 30.0%
! ATATTTGGAAGCATACAAAG+AGG - tig0025690:70435-70454 Msa1424450:intron 30.0%
CATACAAAGAGGCAATTAAT+TGG - tig0025690:70446-70465 Msa1424450:intron 30.0%
TGACCTCTAAATTAAGCTAA+TGG + tig0025690:70651-70670 None:intergenic 30.0%
CACTATTCATTACCTCAATT+TGG + tig0025690:69474-69493 None:intergenic 30.0%
ATTGAGGTAATGAATAGTGA+TGG - tig0025690:69475-69494 Msa1424450:three_prime_UTR 30.0%
AATACATATATACCTGACCA+GGG + tig0025690:69849-69868 None:intergenic 30.0%
TGAAAACTGTTTGAAGAGAA+AGG - tig0025690:70075-70094 Msa1424450:intron 30.0%
AAAAAGAAAAGAAAGACCTG+AGG - tig0025690:70267-70286 Msa1424450:intron 30.0%
! ATATTTGGAAGCATACAAAG+AGG - tig0025690:70435-70454 Msa1424450:intron 30.0%
CATACAAAGAGGCAATTAAT+TGG - tig0025690:70446-70465 Msa1424450:intron 30.0%
TGACCTCTAAATTAAGCTAA+TGG + tig0025690:70651-70670 None:intergenic 30.0%
GAATACATATATACCTGACC+AGG + tig0025690:69850-69869 None:intergenic 35.0%
ATTTATACACCCAACAGTCA+GGG + tig0025690:70177-70196 None:intergenic 35.0%
!! TGACAATGGTGCTGATTATT+GGG - tig0025690:70340-70359 Msa1424450:intron 35.0%
GGGGATTTCAGTAGATTAAT+TGG - tig0025690:70378-70397 Msa1424450:intron 35.0%
ACAAAGAGGCAATTAATTGG+TGG - tig0025690:70449-70468 Msa1424450:intron 35.0%
GAATACATATATACCTGACC+AGG + tig0025690:69850-69869 None:intergenic 35.0%
ATTTATACACCCAACAGTCA+GGG + tig0025690:70177-70196 None:intergenic 35.0%
!! TGACAATGGTGCTGATTATT+GGG - tig0025690:70340-70359 Msa1424450:intron 35.0%
GGGGATTTCAGTAGATTAAT+TGG - tig0025690:70378-70397 Msa1424450:intron 35.0%
ACAAAGAGGCAATTAATTGG+TGG - tig0025690:70449-70468 Msa1424450:intron 35.0%
ATTCCTTCAGAGCCAAATTG+AGG - tig0025690:69459-69478 Msa1424450:three_prime_UTR 40.0%
!! TTACCTCAATTTGGCTCTGA+AGG + tig0025690:69465-69484 None:intergenic 40.0%
!!! TTCTCTTTACTTTTTCCCCG+TGG - tig0025690:69558-69577 Msa1424450:three_prime_UTR 40.0%
GCACTTAGCTTACCATACTT+GGG - tig0025690:69590-69609 Msa1424450:three_prime_UTR 40.0%
AGCTTACCATACTTGGGAAA+TGG - tig0025690:69596-69615 Msa1424450:three_prime_UTR 40.0%
CATACTTGGGAAATGGATCA+GGG - tig0025690:69603-69622 Msa1424450:three_prime_UTR 40.0%
CTAATTGCATGTGCAAGCTT+AGG - tig0025690:69725-69744 Msa1424450:three_prime_UTR 40.0%
! CCTCAAACTTAATGGATCCA+AGG + tig0025690:69877-69896 None:intergenic 40.0%
CCTTGGATCCATTAAGTTTG+AGG - tig0025690:69874-69893 Msa1424450:intron 40.0%
TTTATACACCCAACAGTCAG+GGG + tig0025690:70176-70195 None:intergenic 40.0%
CATTTATACACCCAACAGTC+AGG + tig0025690:70178-70197 None:intergenic 40.0%
! ATGCAAGTTGGAAGTGACAA+TGG - tig0025690:70326-70345 Msa1424450:intron 40.0%
!! GTGACAATGGTGCTGATTAT+TGG - tig0025690:70339-70358 Msa1424450:intron 40.0%
ATTGCTCATGATGCTATGCA+GGG - tig0025690:70529-70548 Msa1424450:CDS 40.0%
ATTCCTTCAGAGCCAAATTG+AGG - tig0025690:69459-69478 Msa1424450:three_prime_UTR 40.0%
!! TTACCTCAATTTGGCTCTGA+AGG + tig0025690:69465-69484 None:intergenic 40.0%
!!! TTCTCTTTACTTTTTCCCCG+TGG - tig0025690:69558-69577 Msa1424450:three_prime_UTR 40.0%
GCACTTAGCTTACCATACTT+GGG - tig0025690:69590-69609 Msa1424450:three_prime_UTR 40.0%
AGCTTACCATACTTGGGAAA+TGG - tig0025690:69596-69615 Msa1424450:three_prime_UTR 40.0%
CATACTTGGGAAATGGATCA+GGG - tig0025690:69603-69622 Msa1424450:three_prime_UTR 40.0%
CTAATTGCATGTGCAAGCTT+AGG - tig0025690:69725-69744 Msa1424450:three_prime_UTR 40.0%
! CCTCAAACTTAATGGATCCA+AGG + tig0025690:69877-69896 None:intergenic 40.0%
CCTTGGATCCATTAAGTTTG+AGG - tig0025690:69874-69893 Msa1424450:intron 40.0%
TTTATACACCCAACAGTCAG+GGG + tig0025690:70176-70195 None:intergenic 40.0%
CATTTATACACCCAACAGTC+AGG + tig0025690:70178-70197 None:intergenic 40.0%
! ATGCAAGTTGGAAGTGACAA+TGG - tig0025690:70326-70345 Msa1424450:intron 40.0%
!! GTGACAATGGTGCTGATTAT+TGG - tig0025690:70339-70358 Msa1424450:intron 40.0%
ATTGCTCATGATGCTATGCA+GGG - tig0025690:70529-70548 Msa1424450:CDS 40.0%
GGCACTTAGCTTACCATACT+TGG - tig0025690:69589-69608 Msa1424450:three_prime_UTR 45.0%
CCTGATCCATTTCCCAAGTA+TGG + tig0025690:69605-69624 None:intergenic 45.0%
CCATACTTGGGAAATGGATC+AGG - tig0025690:69602-69621 Msa1424450:three_prime_UTR 45.0%
TGTTTATTCCCTGAAGACCC+TGG - tig0025690:69829-69848 Msa1424450:CDS 45.0%
GAGAAAGGCAGTTAGTGAAC+AGG - tig0025690:70090-70109 Msa1424450:intron 45.0%
TTATACACCCAACAGTCAGG+GGG + tig0025690:70175-70194 None:intergenic 45.0%
ACTTGCATTGTGCATGACAC+TGG + tig0025690:70314-70333 None:intergenic 45.0%
GTGTCATGCACAATGCAAGT+TGG - tig0025690:70314-70333 Msa1424450:intron 45.0%
! GATTATTGGGCTCCTGCTTT+TGG - tig0025690:70353-70372 Msa1424450:intron 45.0%
GATTGCTCATGATGCTATGC+AGG - tig0025690:70528-70547 Msa1424450:CDS 45.0%
GGCACTTAGCTTACCATACT+TGG - tig0025690:69589-69608 Msa1424450:three_prime_UTR 45.0%
CCTGATCCATTTCCCAAGTA+TGG + tig0025690:69605-69624 None:intergenic 45.0%
CCATACTTGGGAAATGGATC+AGG - tig0025690:69602-69621 Msa1424450:three_prime_UTR 45.0%
TGTTTATTCCCTGAAGACCC+TGG - tig0025690:69829-69848 Msa1424450:CDS 45.0%
GAGAAAGGCAGTTAGTGAAC+AGG - tig0025690:70090-70109 Msa1424450:intron 45.0%
TTATACACCCAACAGTCAGG+GGG + tig0025690:70175-70194 None:intergenic 45.0%
ACTTGCATTGTGCATGACAC+TGG + tig0025690:70314-70333 None:intergenic 45.0%
GTGTCATGCACAATGCAAGT+TGG - tig0025690:70314-70333 Msa1424450:intron 45.0%
! GATTATTGGGCTCCTGCTTT+TGG - tig0025690:70353-70372 Msa1424450:intron 45.0%
GATTGCTCATGATGCTATGC+AGG - tig0025690:70528-70547 Msa1424450:CDS 45.0%
!! ATTATTTAATAATTAATGTT+AGG - tig0025690:69789-69808 Msa1424450:CDS 5.0%
!! ATTATTTAATAATTAATGTT+AGG - tig0025690:69789-69808 Msa1424450:CDS 5.0%
! TTTTTCCCCGTGGATCATGC+AGG - tig0025690:69568-69587 Msa1424450:three_prime_UTR 50.0%
TAAGTGCCTGCATGATCCAC+GGG + tig0025690:69577-69596 None:intergenic 50.0%
CTAAGTGCCTGCATGATCCA+CGG + tig0025690:69578-69597 None:intergenic 50.0%
ATACCTGACCAGGGTCTTCA+GGG + tig0025690:69840-69859 None:intergenic 50.0%
TATACCTGACCAGGGTCTTC+AGG + tig0025690:69841-69860 None:intergenic 50.0%
AAGAAAGACCTGAGGAGCAG+AGG - tig0025690:70275-70294 Msa1424450:intron 50.0%
AACACAATCCTCTGCTCCTC+AGG + tig0025690:70286-70305 None:intergenic 50.0%
GAGGAGCAGAGGATTGTGTT+TGG - tig0025690:70286-70305 Msa1424450:intron 50.0%
!! TATTGGGCTCCTGCTTTTGG+TGG - tig0025690:70356-70375 Msa1424450:intron 50.0%
!! ATTGGGCTCCTGCTTTTGGT+GGG - tig0025690:70357-70376 Msa1424450:intron 50.0%
TGAAATCCCCCACCAAAAGC+AGG + tig0025690:70368-70387 None:intergenic 50.0%
! TTTTTCCCCGTGGATCATGC+AGG - tig0025690:69568-69587 Msa1424450:three_prime_UTR 50.0%
TAAGTGCCTGCATGATCCAC+GGG + tig0025690:69577-69596 None:intergenic 50.0%
CTAAGTGCCTGCATGATCCA+CGG + tig0025690:69578-69597 None:intergenic 50.0%
ATACCTGACCAGGGTCTTCA+GGG + tig0025690:69840-69859 None:intergenic 50.0%
TATACCTGACCAGGGTCTTC+AGG + tig0025690:69841-69860 None:intergenic 50.0%
AAGAAAGACCTGAGGAGCAG+AGG - tig0025690:70275-70294 Msa1424450:intron 50.0%
AACACAATCCTCTGCTCCTC+AGG + tig0025690:70286-70305 None:intergenic 50.0%
GAGGAGCAGAGGATTGTGTT+TGG - tig0025690:70286-70305 Msa1424450:intron 50.0%
!! TATTGGGCTCCTGCTTTTGG+TGG - tig0025690:70356-70375 Msa1424450:intron 50.0%
!! ATTGGGCTCCTGCTTTTGGT+GGG - tig0025690:70357-70376 Msa1424450:intron 50.0%
TGAAATCCCCCACCAAAAGC+AGG + tig0025690:70368-70387 None:intergenic 50.0%
AAGTGCCTGCATGATCCACG+GGG + tig0025690:69576-69595 None:intergenic 55.0%
ATTCCCTGAAGACCCTGGTC+AGG - tig0025690:69834-69853 Msa1424450:CDS 55.0%
TTCACGTCCCCCTGACTGTT+GGG - tig0025690:70165-70184 Msa1424450:intron 55.0%
!! TTGGGCTCCTGCTTTTGGTG+GGG - tig0025690:70358-70377 Msa1424450:intron 55.0%
AAGTGCCTGCATGATCCACG+GGG + tig0025690:69576-69595 None:intergenic 55.0%
ATTCCCTGAAGACCCTGGTC+AGG - tig0025690:69834-69853 Msa1424450:CDS 55.0%
TTCACGTCCCCCTGACTGTT+GGG - tig0025690:70165-70184 Msa1424450:intron 55.0%
!! TTGGGCTCCTGCTTTTGGTG+GGG - tig0025690:70358-70377 Msa1424450:intron 55.0%
GTTCACGTCCCCCTGACTGT+TGG - tig0025690:70164-70183 Msa1424450:intron 60.0%
!! TGGGCTCCTGCTTTTGGTGG+GGG - tig0025690:70359-70378 Msa1424450:intron 60.0%
GTTCACGTCCCCCTGACTGT+TGG - tig0025690:70164-70183 Msa1424450:intron 60.0%
!! TGGGCTCCTGCTTTTGGTGG+GGG - tig0025690:70359-70378 Msa1424450:intron 60.0%
Chromosome Type Strat End Strand Name
tig0025690 gene 69397 70746 69397 ID=Msa1424450;Name=Msa1424450
tig0025690 mRNA 69397 70746 69397 ID=Msa1424450-mRNA-1;Parent=Msa1424450;Name=Msa1424450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|1|1|1|1|5|355|125
tig0025690 exon 69397 69886 69397 ID=Msa1424450-mRNA-1:exon:3755;Parent=Msa1424450-mRNA-1
tig0025690 exon 70032 70076 70032 ID=Msa1424450-mRNA-1:exon:3754;Parent=Msa1424450-mRNA-1
tig0025690 exon 70288 70332 70288 ID=Msa1424450-mRNA-1:exon:3753;Parent=Msa1424450-mRNA-1
tig0025690 exon 70485 70553 70485 ID=Msa1424450-mRNA-1:exon:3752;Parent=Msa1424450-mRNA-1
tig0025690 exon 70663 70746 70663 ID=Msa1424450-mRNA-1:exon:3751;Parent=Msa1424450-mRNA-1
tig0025690 CDS 70663 70746 70663 ID=Msa1424450-mRNA-1:cds;Parent=Msa1424450-mRNA-1
tig0025690 CDS 70485 70553 70485 ID=Msa1424450-mRNA-1:cds;Parent=Msa1424450-mRNA-1
tig0025690 CDS 70288 70332 70288 ID=Msa1424450-mRNA-1:cds;Parent=Msa1424450-mRNA-1
tig0025690 CDS 70032 70076 70032 ID=Msa1424450-mRNA-1:cds;Parent=Msa1424450-mRNA-1
tig0025690 CDS 69752 69886 69752 ID=Msa1424450-mRNA-1:cds;Parent=Msa1424450-mRNA-1
tig0025690 three_prime_UTR 69397 69751 69397 ID=Msa1424450-mRNA-1:three_prime_utr;Parent=Msa1424450-mRNA-1
Gene Sequence

>Msa1424450

GTTTCTAAACTTTTGCAGACTGACACAGCCTCTGTCTTATTAGAATCTATTGGTTATATCAGATTCCTTCAGAGCCAAATTGAGGCACTTAGCTTACCATACTTGGGAAATGGATCAGGGAACATGAAGAAGCAACAACAACAACAACAATATGTTCAAGGAGAGAAGAATTGTTTATTCCCTGAAGACCCTGGTCAGCTGCTGAATGAAAACTGTTTGAAGAGAAAGGCAGTTAGTGAACAGGTCTGTGAAGAAAAAGAAAAGAAAGACCTGAGGAGCAGAGGATTGTGTTTGGTTCCAGTGTCATGCACAATGCAAGTTGGAAGTGACAATGGTGCTGATTATTGGGCTCCTGCTTTTGGTGGGGGATTTCAGTAG

Protein sequence

>Msa1424450

VSKLLQTDTASVLLESIGYIRFLQSQIEALSLPYLGNGSGNMKKQQQQQQYVQGEKNCLFPEDPGQLLNENCLKRKAVSEQVCEEKEKKDLRSRGLCLVPVSCTMQVGSDNGADYWAPAFGGGFQ*