Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1110920 | XP_003623714.1 | 95.137 | 329 | 16 | 0 | 1 | 329 | 1 | 329 | 0.0 | 651 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1110920 | sp|Q40316|VESTR_MEDSA | 67.477 | 329 | 104 | 1 | 1 | 329 | 1 | 326 | 1.14e-168 | 474 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1110920 | G7KZB6 | 95.137 | 329 | 16 | 0 | 1 | 329 | 1 | 329 | 0.0 | 651 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0032040 | Msa1110920 | 0.802619 | 5.147532e-49 | -8.615850e-47 |
Msa0040190 | Msa1110920 | 0.803139 | 4.019549e-49 | -8.615850e-47 |
Msa0607440 | Msa1110920 | 0.815067 | 1.117968e-51 | -8.615850e-47 |
Msa0618260 | Msa1110920 | 0.802102 | 6.579783e-49 | -8.615850e-47 |
Msa0626890 | Msa1110920 | 0.802977 | 4.342189e-49 | -8.615850e-47 |
Msa0635470 | Msa1110920 | 0.805960 | 1.037286e-49 | -8.615850e-47 |
Msa0657820 | Msa1110920 | 0.821238 | 4.489621e-53 | -8.615850e-47 |
Msa0687320 | Msa1110920 | 0.809000 | 2.348487e-50 | -8.615850e-47 |
Msa0712440 | Msa1110920 | 0.811588 | 6.494099e-51 | -8.615850e-47 |
Msa0714020 | Msa1110920 | 0.811740 | 6.019636e-51 | -8.615850e-47 |
Msa0714160 | Msa1110920 | 0.811824 | 5.770576e-51 | -8.615850e-47 |
Msa0759940 | Msa1110920 | 0.808054 | 3.739393e-50 | -8.615850e-47 |
Msa0839730 | Msa1110920 | 0.833773 | 4.399260e-56 | -8.615850e-47 |
Msa0121080 | Msa1110920 | 0.809255 | 2.071623e-50 | -8.615850e-47 |
Msa0164630 | Msa1110920 | 0.804381 | 2.219957e-49 | -8.615850e-47 |
Msa0181290 | Msa1110920 | 0.811824 | 5.771173e-51 | -8.615850e-47 |
Msa0206600 | Msa1110920 | 0.825789 | 3.870023e-54 | -8.615850e-47 |
Msa0226580 | Msa1110920 | 0.822956 | 1.794654e-53 | -8.615850e-47 |
Msa0421100 | Msa1110920 | 0.826367 | 2.821262e-54 | -8.615850e-47 |
Msa0440110 | Msa1110920 | 0.802742 | 4.857104e-49 | -8.615850e-47 |
Msa0471080 | Msa1110920 | 0.827961 | 1.171768e-54 | -8.615850e-47 |
Msa0475740 | Msa1110920 | 0.804232 | 2.384497e-49 | -8.615850e-47 |
Msa0984850 | Msa1110920 | 0.814231 | 1.711406e-51 | -8.615850e-47 |
Msa1008960 | Msa1110920 | 0.815285 | 9.999646e-52 | -8.615850e-47 |
Msa1081700 | Msa1110920 | 0.802270 | 6.075380e-49 | -8.615850e-47 |
Msa1110920 | Msa1138730 | 0.806826 | 6.813102e-50 | -8.615850e-47 |
Msa1110920 | Msa1161520 | 0.840389 | 8.956521e-58 | -8.615850e-47 |
Msa1110920 | Msa1188380 | 0.800248 | 1.575601e-48 | -8.615850e-47 |
Msa1110920 | Msa1198820 | 0.805473 | 1.312296e-49 | -8.615850e-47 |
Msa1110920 | Msa1208070 | 0.802019 | 6.840748e-49 | -8.615850e-47 |
Msa1110920 | Msa1208250 | 0.821593 | 3.718263e-53 | -8.615850e-47 |
Msa1110920 | Msa1230190 | 0.802483 | 5.491087e-49 | -8.615850e-47 |
Msa1110920 | Msa1279240 | 0.813757 | 2.178149e-51 | -8.615850e-47 |
Msa1110920 | Msa1319440 | 0.808593 | 2.869529e-50 | -8.615850e-47 |
Msa1110920 | Msa1331730 | 0.800787 | 1.223300e-48 | -8.615850e-47 |
Msa1110920 | Msa1357380 | 0.822876 | 1.873090e-53 | -8.615850e-47 |
Msa1110920 | Msa1366700 | 0.815974 | 7.022698e-52 | -8.615850e-47 |
Msa1110920 | Msa1379360 | 0.826644 | 2.423027e-54 | -8.615850e-47 |
Msa1110920 | Msa1388230 | 0.813367 | 2.653428e-51 | -8.615850e-47 |
Msa1110920 | Msa1397110 | 0.801001 | 1.106069e-48 | -8.615850e-47 |
Msa1110920 | Msa1408190 | 0.816467 | 5.448386e-52 | -8.615850e-47 |
Msa1110920 | Msa1432250 | 0.804619 | 1.980337e-49 | -8.615850e-47 |
Msa1110920 | Msa1448990 | 0.816061 | 6.714196e-52 | -8.615850e-47 |
Msa1110920 | Msa1450420 | 0.801424 | 9.061569e-49 | -8.615850e-47 |
Msa0492050 | Msa1110920 | 0.807290 | 5.432416e-50 | -8.615850e-47 |
Msa0498320 | Msa1110920 | 0.801264 | 9.773486e-49 | -8.615850e-47 |
Msa0597300 | Msa1110920 | 0.803953 | 2.725973e-49 | -8.615850e-47 |
Msa0883430 | Msa1110920 | 0.801260 | 9.791980e-49 | -8.615850e-47 |
Msa0967960 | Msa1110920 | 0.811590 | 6.489231e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1110920 | MtrunA17_Chr7g0245671 | 95.137 | 329 | 16 | 0 | 1 | 329 | 1 | 329 | 0.0 | 651 |
Msa1110920 | MtrunA17_Chr7g0245691 | 89.394 | 330 | 34 | 1 | 1 | 329 | 1 | 330 | 0.0 | 613 |
Msa1110920 | MtrunA17_Chr7g0245641 | 88.182 | 330 | 37 | 2 | 1 | 329 | 38 | 366 | 0.0 | 603 |
Msa1110920 | MtrunA17_Chr7g0245741 | 76.596 | 329 | 74 | 2 | 1 | 329 | 1 | 326 | 0.0 | 533 |
Msa1110920 | MtrunA17_Chr7g0245731 | 75.076 | 329 | 79 | 2 | 1 | 329 | 51 | 376 | 0.0 | 516 |
Msa1110920 | MtrunA17_Chr7g0245631 | 67.477 | 329 | 104 | 1 | 1 | 329 | 1 | 326 | 1.27e-169 | 474 |
Msa1110920 | MtrunA17_Chr7g0245711 | 73.611 | 288 | 73 | 2 | 42 | 329 | 4 | 288 | 5.82e-157 | 441 |
Msa1110920 | MtrunA17_Chr4g0010991 | 49.547 | 331 | 163 | 3 | 1 | 329 | 1 | 329 | 1.85e-107 | 317 |
Msa1110920 | MtrunA17_Chr1g0155411 | 47.095 | 327 | 159 | 4 | 8 | 329 | 8 | 325 | 1.99e-101 | 301 |
Msa1110920 | MtrunA17_Chr1g0155431 | 47.401 | 327 | 158 | 4 | 8 | 329 | 8 | 325 | 2.76e-99 | 296 |
Msa1110920 | MtrunA17_Chr4g0048961 | 42.515 | 334 | 181 | 6 | 1 | 327 | 7 | 336 | 2.38e-81 | 250 |
Msa1110920 | MtrunA17_Chr4g0042101 | 37.647 | 340 | 188 | 10 | 6 | 329 | 22 | 353 | 6.45e-70 | 221 |
Msa1110920 | MtrunA17_Chr2g0331211 | 38.344 | 326 | 188 | 9 | 7 | 329 | 4 | 319 | 8.43e-67 | 213 |
Msa1110920 | MtrunA17_Chr8g0363831 | 37.576 | 330 | 191 | 7 | 1 | 326 | 1 | 319 | 4.93e-62 | 200 |
Msa1110920 | MtrunA17_Chr3g0077231 | 36.086 | 327 | 192 | 7 | 8 | 329 | 6 | 320 | 7.56e-62 | 199 |
Msa1110920 | MtrunA17_Chr5g0423551 | 36.923 | 325 | 191 | 8 | 9 | 329 | 5 | 319 | 8.50e-61 | 197 |
Msa1110920 | MtrunA17_Chr2g0281991 | 35.694 | 353 | 190 | 9 | 1 | 329 | 1 | 340 | 6.94e-59 | 192 |
Msa1110920 | MtrunA17_Chr8g0364051 | 37.273 | 330 | 192 | 8 | 4 | 329 | 3 | 321 | 1.35e-58 | 191 |
Msa1110920 | MtrunA17_Chr4g0039321 | 35.608 | 337 | 193 | 11 | 1 | 328 | 1 | 322 | 2.97e-57 | 188 |
Msa1110920 | MtrunA17_Chr3g0077221 | 34.969 | 326 | 195 | 8 | 8 | 328 | 10 | 323 | 6.38e-57 | 187 |
Msa1110920 | MtrunA17_Chr3g0106111 | 34.848 | 330 | 192 | 10 | 8 | 329 | 5 | 319 | 4.20e-54 | 179 |
Msa1110920 | MtrunA17_Chr2g0282001 | 35.227 | 352 | 185 | 10 | 3 | 327 | 2 | 337 | 4.49e-53 | 177 |
Msa1110920 | MtrunA17_Chr4g0039311 | 34.859 | 284 | 173 | 6 | 1 | 280 | 3 | 278 | 4.01e-51 | 172 |
Msa1110920 | MtrunA17_Chr2g0282011 | 35.613 | 351 | 189 | 10 | 1 | 327 | 1 | 338 | 7.13e-51 | 172 |
Msa1110920 | MtrunA17_Chr5g0431311 | 36.254 | 331 | 186 | 10 | 8 | 329 | 5 | 319 | 1.94e-50 | 170 |
Msa1110920 | MtrunA17_Chr4g0002661 | 34.862 | 327 | 194 | 10 | 7 | 329 | 12 | 323 | 5.84e-50 | 169 |
Msa1110920 | MtrunA17_Chr2g0333781 | 36.196 | 326 | 188 | 13 | 8 | 329 | 20 | 329 | 4.38e-47 | 162 |
Msa1110920 | MtrunA17_Chr4g0001321 | 34.242 | 330 | 197 | 12 | 4 | 329 | 13 | 326 | 5.32e-47 | 161 |
Msa1110920 | MtrunA17_Chr7g0275521 | 33.046 | 348 | 203 | 10 | 3 | 329 | 2 | 340 | 2.72e-46 | 160 |
Msa1110920 | MtrunA17_Chr4g0002961 | 33.538 | 325 | 201 | 8 | 7 | 329 | 12 | 323 | 2.09e-43 | 152 |
Msa1110920 | MtrunA17_Chr2g0291541 | 33.136 | 338 | 189 | 13 | 8 | 329 | 10 | 326 | 6.86e-43 | 150 |
Msa1110920 | MtrunA17_Chr6g0450211 | 29.588 | 267 | 157 | 10 | 4 | 256 | 51 | 300 | 1.25e-23 | 99.8 |
Msa1110920 | MtrunA17_Chr5g0411071 | 27.857 | 280 | 162 | 10 | 8 | 275 | 12 | 263 | 1.71e-23 | 98.2 |
Msa1110920 | MtrunA17_Chr7g0245701 | 86.047 | 43 | 6 | 0 | 1 | 43 | 1 | 43 | 4.49e-22 | 87.4 |
Msa1110920 | MtrunA17_Chr3g0133771 | 27.675 | 271 | 164 | 9 | 7 | 271 | 3 | 247 | 1.19e-15 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1110920 | AT2G45400.1 | 52.121 | 330 | 149 | 5 | 6 | 329 | 38 | 364 | 7.66e-109 | 322 |
Msa1110920 | AT5G42800.1 | 49.398 | 332 | 158 | 5 | 1 | 329 | 1 | 325 | 4.03e-102 | 305 |
Msa1110920 | AT2G45400.2 | 52.837 | 282 | 125 | 4 | 6 | 281 | 38 | 317 | 8.91e-96 | 287 |
Msa1110920 | AT2G45400.3 | 51.020 | 294 | 136 | 4 | 41 | 329 | 17 | 307 | 4.94e-91 | 274 |
Msa1110920 | AT4G35420.1 | 41.390 | 331 | 182 | 7 | 1 | 329 | 1 | 321 | 5.13e-83 | 254 |
Msa1110920 | AT1G61720.1 | 40.541 | 333 | 187 | 6 | 4 | 329 | 9 | 337 | 9.75e-77 | 239 |
Msa1110920 | AT2G45400.4 | 55.300 | 217 | 91 | 3 | 6 | 216 | 38 | 254 | 2.54e-74 | 229 |
Msa1110920 | AT1G68540.1 | 39.077 | 325 | 184 | 8 | 10 | 329 | 6 | 321 | 5.62e-62 | 200 |
Msa1110920 | AT1G09480.2 | 38.739 | 333 | 189 | 9 | 1 | 329 | 1 | 322 | 2.59e-60 | 196 |
Msa1110920 | AT1G09480.1 | 38.739 | 333 | 189 | 9 | 1 | 329 | 48 | 369 | 9.62e-60 | 196 |
Msa1110920 | AT2G02400.1 | 36.716 | 335 | 185 | 11 | 4 | 329 | 2 | 318 | 1.03e-58 | 192 |
Msa1110920 | AT1G25460.1 | 37.346 | 324 | 189 | 7 | 10 | 329 | 6 | 319 | 1.38e-58 | 191 |
Msa1110920 | AT1G51410.1 | 34.139 | 331 | 203 | 7 | 3 | 329 | 4 | 323 | 3.09e-58 | 191 |
Msa1110920 | AT1G09490.1 | 36.747 | 332 | 197 | 8 | 1 | 329 | 1 | 322 | 1.15e-57 | 189 |
Msa1110920 | AT5G19440.1 | 36.556 | 331 | 192 | 9 | 4 | 328 | 5 | 323 | 5.33e-57 | 187 |
Msa1110920 | AT1G09510.1 | 37.651 | 332 | 188 | 8 | 1 | 326 | 1 | 319 | 2.28e-56 | 186 |
Msa1110920 | AT5G58490.1 | 37.462 | 331 | 182 | 11 | 8 | 329 | 9 | 323 | 5.15e-56 | 185 |
Msa1110920 | AT4G27250.1 | 32.344 | 337 | 207 | 6 | 2 | 321 | 6 | 338 | 7.03e-56 | 186 |
Msa1110920 | AT4G27250.2 | 31.845 | 336 | 200 | 6 | 2 | 321 | 6 | 328 | 1.93e-55 | 184 |
Msa1110920 | AT1G66800.1 | 37.003 | 327 | 194 | 9 | 4 | 329 | 3 | 318 | 9.11e-55 | 181 |
Msa1110920 | AT1G09500.3 | 37.367 | 281 | 164 | 6 | 1 | 277 | 1 | 273 | 3.77e-52 | 174 |
Msa1110920 | AT1G09500.1 | 37.153 | 288 | 169 | 7 | 1 | 284 | 1 | 280 | 1.11e-51 | 174 |
Msa1110920 | AT1G15950.3 | 37.423 | 326 | 184 | 13 | 8 | 329 | 13 | 322 | 6.35e-50 | 170 |
Msa1110920 | AT1G15950.1 | 37.423 | 326 | 184 | 13 | 8 | 329 | 13 | 322 | 6.35e-50 | 170 |
Msa1110920 | AT1G76470.1 | 35.849 | 318 | 194 | 6 | 5 | 320 | 4 | 313 | 7.91e-49 | 166 |
Msa1110920 | AT1G15950.2 | 36.859 | 312 | 182 | 9 | 8 | 317 | 13 | 311 | 3.29e-47 | 162 |
Msa1110920 | AT2G33590.1 | 34.259 | 324 | 189 | 9 | 5 | 321 | 6 | 312 | 9.38e-46 | 158 |
Msa1110920 | AT1G15950.5 | 38.989 | 277 | 154 | 9 | 8 | 282 | 13 | 276 | 1.32e-45 | 157 |
Msa1110920 | AT1G15950.6 | 39.130 | 276 | 153 | 9 | 8 | 281 | 13 | 275 | 1.41e-45 | 156 |
Msa1110920 | AT1G80820.1 | 35.168 | 327 | 190 | 13 | 8 | 329 | 8 | 317 | 1.78e-45 | 158 |
Msa1110920 | AT1G15950.4 | 38.989 | 277 | 154 | 9 | 8 | 282 | 13 | 276 | 2.44e-45 | 156 |
Msa1110920 | AT2G33600.1 | 36.728 | 324 | 181 | 11 | 5 | 321 | 6 | 312 | 6.12e-45 | 156 |
Msa1110920 | AT1G09490.2 | 33.893 | 298 | 185 | 7 | 35 | 329 | 3 | 291 | 2.18e-42 | 149 |
Msa1110920 | AT1G80820.2 | 36.101 | 277 | 160 | 9 | 8 | 281 | 8 | 270 | 2.45e-41 | 145 |
Msa1110920 | AT1G09500.2 | 34.400 | 250 | 153 | 6 | 39 | 284 | 4 | 246 | 5.09e-36 | 132 |
Msa1110920 | AT1G68540.2 | 35.586 | 222 | 131 | 6 | 112 | 329 | 1 | 214 | 1.70e-32 | 120 |
Msa1110920 | AT2G23910.1 | 27.036 | 307 | 200 | 11 | 9 | 306 | 11 | 302 | 3.08e-28 | 111 |
Msa1110920 | AT2G23910.3 | 26.882 | 279 | 184 | 9 | 9 | 282 | 11 | 274 | 9.38e-27 | 107 |
Msa1110920 | AT2G23910.2 | 26.715 | 277 | 183 | 9 | 9 | 280 | 11 | 272 | 1.52e-26 | 106 |
Msa1110920 | AT4G30470.1 | 25.887 | 282 | 186 | 9 | 9 | 284 | 11 | 275 | 8.85e-25 | 102 |
Msa1110920 | AT5G14700.1 | 29.710 | 276 | 154 | 10 | 2 | 256 | 49 | 305 | 7.02e-23 | 98.2 |
Msa1110920 | AT1G15950.7 | 32.479 | 234 | 144 | 9 | 100 | 329 | 1 | 224 | 9.50e-23 | 95.5 |
Msa1110920 | AT5G14700.2 | 29.289 | 239 | 139 | 7 | 2 | 224 | 49 | 273 | 1.19e-20 | 90.5 |
Msa1110920 | AT4G33360.3 | 27.338 | 278 | 178 | 7 | 7 | 280 | 2 | 259 | 7.25e-19 | 86.3 |
Msa1110920 | AT4G33360.2 | 26.962 | 293 | 160 | 9 | 7 | 280 | 14 | 271 | 8.81e-19 | 85.5 |
Msa1110920 | AT4G33360.1 | 27.338 | 278 | 178 | 7 | 7 | 280 | 14 | 271 | 1.14e-18 | 85.9 |
Msa1110920 | AT2G23910.4 | 25.373 | 268 | 175 | 11 | 49 | 306 | 16 | 268 | 4.00e-18 | 83.2 |
Find 94 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTGCTGCATTGAAACTTTC+TGG | 0.117961 | 7_3:-56387468 | None:intergenic |
AGTTCACTAGCTTTCTTATT+TGG | 0.183198 | 7_3:+56387888 | Msa1110920:CDS |
GAGAAAGCTGTTCTAGAATT+TGG | 0.187155 | 7_3:+56387777 | Msa1110920:CDS |
CATTGAAAATATTTAGCTTT+TGG | 0.212269 | 7_3:-56387431 | None:intergenic |
TTCATCTTCTAGGGAGCTTA+TGG | 0.214503 | 7_3:+56388307 | Msa1110920:intron |
TGAAGTGTGAAAATATATTT+TGG | 0.227942 | 7_3:+56385776 | Msa1110920:five_prime_UTR |
GAGCAATTATATCTTCCTTT+TGG | 0.266827 | 7_3:-56388129 | None:intergenic |
AGGGAGCTTATGGGAGTTAA+AGG | 0.281801 | 7_3:+56388317 | Msa1110920:intron |
ACTGGAGGTACAGGGTTTAT+TGG | 0.300052 | 7_3:+56385852 | Msa1110920:CDS |
AATTTCTTCGAAGAGGAGTT+TGG | 0.311161 | 7_3:-56384020 | None:intergenic |
GGAAGAAGAGTGAGGTAAAC+TGG | 0.317241 | 7_3:+56385797 | Msa1110920:five_prime_UTR |
AGAACCATTGATGGAGCATT+AGG | 0.319772 | 7_3:+56387570 | Msa1110920:CDS |
GCGACAACTCTAAACTTATC+TGG | 0.329796 | 7_3:-56384526 | None:intergenic |
GATGTTGGCATTTGAAGTTC+AGG | 0.351951 | 7_3:-56388204 | None:intergenic |
AGGTAATGGATGAAAGTTAT+TGG | 0.353449 | 7_3:+56387685 | Msa1110920:CDS |
CATTTGAAGTTCAGGATACT+TGG | 0.362756 | 7_3:-56388196 | None:intergenic |
ATTTGGAGAACAACATGGTT+TGG | 0.364972 | 7_3:+56387794 | Msa1110920:CDS |
ATTTCTTCGAAGAGGAGTTT+GGG | 0.369905 | 7_3:-56384019 | None:intergenic |
AATTGAATGTTGCAAGGAAA+AGG | 0.371801 | 7_3:+56388427 | Msa1110920:CDS |
ATAAGAAAGCTAGTGAACTA+TGG | 0.381083 | 7_3:-56387884 | None:intergenic |
GTACAGGGTTTATTGGTTCA+TGG | 0.397157 | 7_3:+56385859 | Msa1110920:CDS |
GAGGTTAAATGTGGAAACTT+AGG | 0.398400 | 7_3:-56388341 | None:intergenic |
TTGCTGCATTGAAACTTTCT+GGG | 0.400104 | 7_3:-56387467 | None:intergenic |
TGGTTCTGTATGAATGTTGA+TGG | 0.405495 | 7_3:-56385740 | None:intergenic |
CAATTCCTCCACTGATAGCT+TGG | 0.413382 | 7_3:+56385659 | Msa1110920:five_prime_UTR |
TCTTTCAGTTCAAAATCAAC+TGG | 0.415670 | 7_3:-56387525 | None:intergenic |
TCATCTTCTAGGGAGCTTAT+GGG | 0.418457 | 7_3:+56388308 | Msa1110920:intron |
AGAGAATCCCTACAGATTCA+TGG | 0.420871 | 7_3:-56384080 | None:intergenic |
TCTTCAATAGTTGCAATGAA+TGG | 0.434791 | 7_3:-56388153 | None:intergenic |
AAAGGAAGAGTTTGTGTGAC+TGG | 0.438296 | 7_3:+56385834 | Msa1110920:CDS |
GTTTGTGTGACTGGAGGTAC+AGG | 0.443705 | 7_3:+56385843 | Msa1110920:CDS |
ATCATCCACGAGTTTCTTTG+AGG | 0.447908 | 7_3:-56388360 | None:intergenic |
AGAGTGAGGTAAACTGGTAA+TGG | 0.454760 | 7_3:+56385803 | Msa1110920:exon |
GTACGAGATACAAGCACTAA+TGG | 0.458074 | 7_3:-56388045 | None:intergenic |
AATTCCTAATGCTCCATCAA+TGG | 0.462695 | 7_3:-56387574 | None:intergenic |
AGTTTCAATGCAGCAATTGA+AGG | 0.465129 | 7_3:+56387474 | Msa1110920:CDS |
TTCATTTGTCCTAAGCTACC+TGG | 0.469552 | 7_3:+56387855 | Msa1110920:CDS |
AGAGTTGTCGCACTCGCAGC+TGG | 0.472060 | 7_3:+56384538 | Msa1110920:five_prime_UTR |
TAACAGCATAACCATCTTCA+AGG | 0.473218 | 7_3:-56385896 | None:intergenic |
AAACAAAGAAGAAGAGGTAA+TGG | 0.474396 | 7_3:+56387671 | Msa1110920:CDS |
ATCAAGAGACTCCTTGAAGA+TGG | 0.485072 | 7_3:+56385885 | Msa1110920:CDS |
TCAAAGAAACTCGTGGATGA+TGG | 0.487540 | 7_3:+56388362 | Msa1110920:CDS |
CTTGAACATCCTAATCCAAA+AGG | 0.495386 | 7_3:+56388114 | Msa1110920:CDS |
ATTGAATGTTGCAAGGAAAA+GGG | 0.495429 | 7_3:+56388428 | Msa1110920:CDS |
GCAGCAATTGAAGGGTGCAT+TGG | 0.498418 | 7_3:+56387483 | Msa1110920:CDS |
GGTAAACTGGTAATGGAAGA+AGG | 0.500176 | 7_3:+56385810 | Msa1110920:exon |
AACGAATAATTTAATGAATG+AGG | 0.503416 | 7_3:+56388600 | Msa1110920:three_prime_UTR |
TGGACAGATCCAGGTAGCTT+AGG | 0.512154 | 7_3:-56387864 | None:intergenic |
ACAGCATATGACCAAGCAAA+AGG | 0.516501 | 7_3:-56387738 | None:intergenic |
TAGCCTTGAGGAAATGTTTG+AGG | 0.521228 | 7_3:+56388400 | Msa1110920:CDS |
CATTCTGAATTTCTTCGAAG+AGG | 0.522209 | 7_3:-56384027 | None:intergenic |
CATTACTCTTCTGATAGATC+AGG | 0.523314 | 7_3:+56384567 | Msa1110920:five_prime_UTR |
CAAAATCAGAAAATTCGAAT+CGG | 0.525041 | 7_3:-56384137 | None:intergenic |
AAAGGTCCAACAACAAAAGT+TGG | 0.534220 | 7_3:-56387834 | None:intergenic |
GCTTGTATCTCGTACCGGTA+TGG | 0.538328 | 7_3:+56388053 | Msa1110920:CDS |
AGTGAACTATGGACAGATCC+AGG | 0.545594 | 7_3:-56387873 | None:intergenic |
TCAACGGAACGGATTGCACC+GGG | 0.546953 | 7_3:-56388570 | None:intergenic |
GTAAACTGGTAATGGAAGAA+GGG | 0.549489 | 7_3:+56385811 | Msa1110920:exon |
TATGCAAAACAAAGAAGAAG+AGG | 0.554133 | 7_3:+56387665 | Msa1110920:CDS |
TGTAGAACTCACTTGGATGT+TGG | 0.557000 | 7_3:-56388219 | None:intergenic |
ATCATCAACATGCACCATAC+CGG | 0.559899 | 7_3:-56388067 | None:intergenic |
GAATCACACCATGAATCTGT+AGG | 0.561058 | 7_3:+56384072 | Msa1110920:five_prime_UTR |
AGTTTCTTTGAGGTTAAATG+TGG | 0.564214 | 7_3:-56388350 | None:intergenic |
GTTTCAATGCAGCAATTGAA+GGG | 0.573950 | 7_3:+56387475 | Msa1110920:CDS |
ACCACTGTTAGATCAAATCC+AGG | 0.579008 | 7_3:+56385921 | Msa1110920:CDS |
TTATTCGTTTGTTATTTCAA+CGG | 0.579253 | 7_3:-56388586 | None:intergenic |
ATGACTGACGAGTGAACAAT+CGG | 0.583779 | 7_3:-56384112 | None:intergenic |
TTCAACGGAACGGATTGCAC+CGG | 0.584524 | 7_3:-56388571 | None:intergenic |
AAATCATATGTCGCTAGACA+TGG | 0.587909 | 7_3:+56388496 | Msa1110920:three_prime_UTR |
CTAGAATTTGGAGAACAACA+TGG | 0.590067 | 7_3:+56387789 | Msa1110920:CDS |
CGTCCTCAAACATTTCCTCA+AGG | 0.591440 | 7_3:-56388403 | None:intergenic |
AATCACACCATGAATCTGTA+GGG | 0.593495 | 7_3:+56384073 | Msa1110920:five_prime_UTR |
CAGGATACTTGGAAGAAACA+AGG | 0.598723 | 7_3:-56388185 | None:intergenic |
TTAGTGCTTGTATCTCGTAC+CGG | 0.600363 | 7_3:+56388048 | Msa1110920:CDS |
CGTTTGTTATTTCAACGGAA+CGG | 0.604015 | 7_3:-56388581 | None:intergenic |
GGACGCAATTGAATGTTGCA+AGG | 0.609289 | 7_3:+56388421 | Msa1110920:CDS |
ACACACAGCAGAAGCACTTG+AGG | 0.617963 | 7_3:-56387643 | None:intergenic |
CTGGTAATGGAAGAAGGGAA+AGG | 0.621681 | 7_3:+56385816 | Msa1110920:exon |
TTTAACCTCAAAGAAACTCG+TGG | 0.633314 | 7_3:+56388355 | Msa1110920:CDS |
TTTGTGTGACTGGAGGTACA+GGG | 0.633409 | 7_3:+56385844 | Msa1110920:CDS |
TTAAACCAAGCTATCAGTGG+AGG | 0.635009 | 7_3:-56385664 | None:intergenic |
TATGGTGCATGTTGATGATG+TGG | 0.643007 | 7_3:+56388071 | Msa1110920:CDS |
AAATTAAACCAAGCTATCAG+TGG | 0.653893 | 7_3:-56385667 | None:intergenic |
GAAGAAATTCAGAATGACAT+CGG | 0.657645 | 7_3:+56384034 | Msa1110920:five_prime_UTR |
ACCTGGATTTGATCTAACAG+TGG | 0.666953 | 7_3:-56385922 | None:intergenic |
TTTCTTCGAAGAGGAGTTTG+GGG | 0.667797 | 7_3:-56384018 | None:intergenic |
CGAGTTCAAGTATAGCCTTG+AGG | 0.673632 | 7_3:+56388388 | Msa1110920:CDS |
AATCAACTGGAGTAGCTGTG+TGG | 0.675600 | 7_3:-56387512 | None:intergenic |
GGTAGCTTAGGACAAATGAA+AGG | 0.676303 | 7_3:-56387852 | None:intergenic |
ACGGAACGGATTGCACCGGG+TGG | 0.680244 | 7_3:-56388567 | None:intergenic |
GTAGACACTAGATATTGTCG+CGG | 0.698614 | 7_3:+56384498 | Msa1110920:intron |
ACTGACGAGTGAACAATCGG+TGG | 0.698745 | 7_3:-56384109 | None:intergenic |
GGAAGAGTTTGTGTGACTGG+AGG | 0.702220 | 7_3:+56385837 | Msa1110920:CDS |
TTGCATTTGGAAGATCTGTG+AGG | 0.788148 | 7_3:-56387407 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAAAAAAAATATATGGA+TGG | + | chr7_3:56384837-56384856 | Msa1110920:intron | 10.0% |
!!! | ATTATTTTAAAAAAATTGAG+TGG | + | chr7_3:56384933-56384952 | Msa1110920:intron | 10.0% |
!! | TAAATTAAAAATTTAATTGG+AGG | - | chr7_3:56385506-56385525 | None:intergenic | 10.0% |
!!! | TCCAATTAAATTTTTAATTT+AGG | + | chr7_3:56385505-56385524 | Msa1110920:intron | 10.0% |
!! | TCCTAAATTAAAAATTTAAT+TGG | - | chr7_3:56385509-56385528 | None:intergenic | 10.0% |
!! | AATTGATAAAAATTAACAAA+TGG | + | chr7_3:56387992-56388011 | Msa1110920:intron | 10.0% |
!!! | ATTTTAGTGTTTTTTGAAAT+GGG | + | chr7_3:56384170-56384189 | Msa1110920:intron | 15.0% |
!!! | ATTTTAAGTTTTTTAATGGA+TGG | - | chr7_3:56384872-56384891 | None:intergenic | 15.0% |
!! | ATCCATTAAAAAACTTAAAA+TGG | + | chr7_3:56384871-56384890 | Msa1110920:intron | 15.0% |
!!! | ATCCATTTTAAGTTTTTTAA+TGG | - | chr7_3:56384876-56384895 | None:intergenic | 15.0% |
!! | ATTAAAAAACTTAAAATGGA+TGG | + | chr7_3:56384875-56384894 | Msa1110920:intron | 15.0% |
!!! | GATTTTTTTTTCTTTCAAAA+AGG | - | chr7_3:56385952-56385971 | None:intergenic | 15.0% |
!!! | ATCTAAAACAAAATTTTAGA+AGG | - | chr7_3:56386262-56386281 | None:intergenic | 15.0% |
!! | AGTGTAAAAATCTAATATAA+TGG | + | chr7_3:56386292-56386311 | Msa1110920:intron | 15.0% |
!!! | TTCAATTCTTCATTTTTTTA+GGG | - | chr7_3:56386936-56386955 | None:intergenic | 15.0% |
!!! | AGATTTTATATGTTGAAATT+TGG | - | chr7_3:56387177-56387196 | None:intergenic | 15.0% |
!! | TAACAACAAATAAACAAAAT+TGG | - | chr7_3:56387306-56387325 | None:intergenic | 15.0% |
!!! | ATTGAAAATATTTAGCTTTT+GGG | - | chr7_3:56387433-56387452 | None:intergenic | 15.0% |
!!! | GATTTTAGTGTTTTTTGAAA+TGG | + | chr7_3:56384169-56384188 | Msa1110920:intron | 20.0% |
!!! | CATGTAATCAAATTTTGAAT+TGG | + | chr7_3:56384608-56384627 | Msa1110920:intron | 20.0% |
!! | AAAAAAATATATGGATGGAT+TGG | + | chr7_3:56384842-56384861 | Msa1110920:intron | 20.0% |
!! | ATCATCCAAAAAAAATTCAA+TGG | - | chr7_3:56385078-56385097 | None:intergenic | 20.0% |
!! | ATTCTTTACATATTTCTTCT+AGG | + | chr7_3:56385219-56385238 | Msa1110920:intron | 20.0% |
!!! | TATATGTAGTTGCATTTTAA+AGG | - | chr7_3:56385253-56385272 | None:intergenic | 20.0% |
!! | ATTAAAAATTTAATTGGAGG+TGG | - | chr7_3:56385503-56385522 | None:intergenic | 20.0% |
!!! | TGAAGTGTGAAAATATATTT+TGG | + | chr7_3:56385776-56385795 | Msa1110920:five_prime_UTR | 20.0% |
!!! | CTTCAATTCTTCATTTTTTT+AGG | - | chr7_3:56386937-56386956 | None:intergenic | 20.0% |
!!! | TGATTTGAATTTTAGTTAAG+AGG | - | chr7_3:56387279-56387298 | None:intergenic | 20.0% |
!!! | CATTGAAAATATTTAGCTTT+TGG | - | chr7_3:56387434-56387453 | None:intergenic | 20.0% |
!!! | TTATTCGTTTGTTATTTCAA+CGG | - | chr7_3:56388589-56388608 | None:intergenic | 20.0% |
! | CAAAATCAGAAAATTCGAAT+CGG | - | chr7_3:56384140-56384159 | None:intergenic | 25.0% |
!! | CGAATTTTCTGATTTTGTAA+AGG | + | chr7_3:56384143-56384162 | Msa1110920:five_prime_UTR | 25.0% |
!! | ATTGTTGAGTTTTCTGAATT+GGG | + | chr7_3:56384242-56384261 | Msa1110920:intron | 25.0% |
! | GTTATAATTGAATAGATGAC+AGG | + | chr7_3:56384389-56384408 | Msa1110920:intron | 25.0% |
!!! | AGTTTTAAGAAAACAGAAAC+TGG | - | chr7_3:56384666-56384685 | None:intergenic | 25.0% |
!! | TTTCTGTTTTCTTAAAACTC+AGG | + | chr7_3:56384667-56384686 | Msa1110920:intron | 25.0% |
! | AAAACTTAAAATGGATGGAT+TGG | + | chr7_3:56384880-56384899 | Msa1110920:intron | 25.0% |
!!! | TGGATGGATTTTATTTTTCA+TGG | + | chr7_3:56384900-56384919 | Msa1110920:intron | 25.0% |
!!! | GGATTTTATTTTTCATGGAT+TGG | + | chr7_3:56384905-56384924 | Msa1110920:intron | 25.0% |
!!! | TTATTTTTCATGGATTGGAT+TGG | + | chr7_3:56384910-56384929 | Msa1110920:intron | 25.0% |
!!! | AAAAATTGAGTGGATTGTAA+AGG | + | chr7_3:56384943-56384962 | Msa1110920:intron | 25.0% |
!!! | AAAATTGAGTGGATTGTAAA+GGG | + | chr7_3:56384944-56384963 | Msa1110920:intron | 25.0% |
! | GATGGATAAAAAAATATCCA+TGG | - | chr7_3:56384971-56384990 | None:intergenic | 25.0% |
!! | TGTTACATTTTGTGTTTGAA+TGG | - | chr7_3:56385153-56385172 | None:intergenic | 25.0% |
! | TACCAATGAAATACTCTTAA+TGG | - | chr7_3:56385309-56385328 | None:intergenic | 25.0% |
!!! | GATCTAATGTTTTTGATTGT+TGG | - | chr7_3:56385693-56385712 | None:intergenic | 25.0% |
!!! | CACTTCACTTTTATTTTTGT+TGG | - | chr7_3:56385763-56385782 | None:intergenic | 25.0% |
! | TTAGAAAAAGTTAATGTACC+CGG | + | chr7_3:56386115-56386134 | Msa1110920:intron | 25.0% |
!! | TGTTTTATCTCTATTTTCTC+CGG | - | chr7_3:56386137-56386156 | None:intergenic | 25.0% |
!!! | AGTAGTTCAAGTGTTTTTTT+GGG | - | chr7_3:56386165-56386184 | None:intergenic | 25.0% |
!!! | AAGTAGTTCAAGTGTTTTTT+TGG | - | chr7_3:56386166-56386185 | None:intergenic | 25.0% |
!!! | TTTGTTGTTATTGTTGCTTA+AGG | - | chr7_3:56386535-56386554 | None:intergenic | 25.0% |
! | CAAATATTGTTTATCCAGTT+CGG | + | chr7_3:56386635-56386654 | Msa1110920:intron | 25.0% |
!! | TTCATTTAGTGTTTTCTCTA+AGG | - | chr7_3:56386781-56386800 | None:intergenic | 25.0% |
! | GAAATATTTGTAAACACCTT+GGG | - | chr7_3:56386836-56386855 | None:intergenic | 25.0% |
! | AGAAATATTTGTAAACACCT+TGG | - | chr7_3:56386837-56386856 | None:intergenic | 25.0% |
! | AGATAAAGTTAGTACTGTAT+TGG | - | chr7_3:56387038-56387057 | None:intergenic | 25.0% |
!!! | TTGAAGTTCTAGAAAAAATG+TGG | - | chr7_3:56387140-56387159 | None:intergenic | 25.0% |
! | ATCCAAAAAATTTGAAGACA+GGG | - | chr7_3:56387203-56387222 | None:intergenic | 25.0% |
! | CAAAACAACCTAAGAATATA+GGG | - | chr7_3:56387252-56387271 | None:intergenic | 25.0% |
! | ACAAAACAACCTAAGAATAT+AGG | - | chr7_3:56387253-56387272 | None:intergenic | 25.0% |
!! | TTATATCTTCCTTTTGGATT+AGG | - | chr7_3:56388126-56388145 | None:intergenic | 25.0% |
! | ATTAATATGTAGAACTCACT+TGG | - | chr7_3:56388229-56388248 | None:intergenic | 25.0% |
!! | TCAATGTATTTTCATCTTCT+AGG | + | chr7_3:56388297-56388316 | Msa1110920:intron | 25.0% |
!! | CAATGTATTTTCATCTTCTA+GGG | + | chr7_3:56388298-56388317 | Msa1110920:intron | 25.0% |
GAAGAAATTCAGAATGACAT+CGG | + | chr7_3:56384034-56384053 | Msa1110920:five_prime_UTR | 30.0% | |
! | GATTGTTGAGTTTTCTGAAT+TGG | + | chr7_3:56384241-56384260 | Msa1110920:intron | 30.0% |
TTACACTTGATTTATTCAGC+TGG | + | chr7_3:56384366-56384385 | Msa1110920:intron | 30.0% | |
TACACTTGATTTATTCAGCT+GGG | + | chr7_3:56384367-56384386 | Msa1110920:intron | 30.0% | |
AATTGAATAGATGACAGGAA+AGG | + | chr7_3:56384394-56384413 | Msa1110920:intron | 30.0% | |
AACAGAAAATCAAACATTCC+AGG | - | chr7_3:56384436-56384455 | None:intergenic | 30.0% | |
TTAAGAAAACAGAAACTGGA+AGG | - | chr7_3:56384662-56384681 | None:intergenic | 30.0% | |
!! | AGGTTCATTCTAAAGCATTT+AGG | + | chr7_3:56384687-56384706 | Msa1110920:intron | 30.0% |
!! | TCATTCTAAAGCATTTAGGA+TGG | + | chr7_3:56384691-56384710 | Msa1110920:intron | 30.0% |
!! | CATTCTAAAGCATTTAGGAT+GGG | + | chr7_3:56384692-56384711 | Msa1110920:intron | 30.0% |
GATATGGATTTGGATGTAAA+TGG | - | chr7_3:56384993-56385012 | None:intergenic | 30.0% | |
!!! | GAGCACCATTGAATTTTTTT+TGG | + | chr7_3:56385070-56385089 | Msa1110920:intron | 30.0% |
AACACAAAATGTAACACCTT+AGG | + | chr7_3:56385157-56385176 | Msa1110920:intron | 30.0% | |
ATACTCTTAATGGTGTGATA+CGG | - | chr7_3:56385299-56385318 | None:intergenic | 30.0% | |
!! | CACCATTAAGAGTATTTCAT+TGG | + | chr7_3:56385304-56385323 | Msa1110920:intron | 30.0% |
!!! | AAGTCTTGATTTGGAGTTTT+AGG | - | chr7_3:56385339-56385358 | None:intergenic | 30.0% |
CATCTGATTCTAAATGACAT+TGG | - | chr7_3:56385387-56385406 | None:intergenic | 30.0% | |
AATCAGATGATGTGACTTTA+TGG | + | chr7_3:56385398-56385417 | Msa1110920:intron | 30.0% | |
TTAATTTAGGAACGTGCAAT+CGG | + | chr7_3:56385518-56385537 | Msa1110920:intron | 30.0% | |
! | TCAATCAGTTTGTATTTCTG+TGG | - | chr7_3:56385559-56385578 | None:intergenic | 30.0% |
GACAAAACAACAAATTGATG+TGG | + | chr7_3:56385593-56385612 | Msa1110920:intron | 30.0% | |
! | AACTTGCTTAGTGTATGTAT+AGG | + | chr7_3:56385624-56385643 | Msa1110920:intron | 30.0% |
AAATTAAACCAAGCTATCAG+TGG | - | chr7_3:56385670-56385689 | None:intergenic | 30.0% | |
!! | TATATTTTGGAAGAAGAGTG+AGG | + | chr7_3:56385789-56385808 | Msa1110920:five_prime_UTR | 30.0% |
! | GTTTTATCTCTATTTTCTCC+GGG | - | chr7_3:56386136-56386155 | None:intergenic | 30.0% |
! | CTAATCATAACTTTTCGTTG+TGG | + | chr7_3:56386336-56386355 | Msa1110920:intron | 30.0% |
CATCAATAAAACTGTATGTG+TGG | + | chr7_3:56386474-56386493 | Msa1110920:intron | 30.0% | |
TGTATCACTCTTTATCATAG+TGG | - | chr7_3:56386701-56386720 | None:intergenic | 30.0% | |
!!! | TTTGGTGAGAGTTTTTTCTT+GGG | - | chr7_3:56386863-56386882 | None:intergenic | 30.0% |
!!! | ACGATTTTGATTCTTTTCCT+CGG | - | chr7_3:56387116-56387135 | None:intergenic | 30.0% |
! | GTTGAAATTTGGCTCAAAAT+TGG | - | chr7_3:56387166-56387185 | None:intergenic | 30.0% |
TCCAAAAAATTTGAAGACAG+GGG | - | chr7_3:56387202-56387221 | None:intergenic | 30.0% | |
GATCCAAAAAATTTGAAGAC+AGG | - | chr7_3:56387204-56387223 | None:intergenic | 30.0% | |
ATTCTCATCCCTATATTCTT+AGG | + | chr7_3:56387241-56387260 | Msa1110920:intron | 30.0% | |
CTTACATATCTATCGTTACA+TGG | - | chr7_3:56387345-56387364 | None:intergenic | 30.0% | |
AGCGAAATTATACAAATTGC+AGG | + | chr7_3:56387363-56387382 | Msa1110920:intron | 30.0% | |
GCGAAATTATACAAATTGCA+GGG | + | chr7_3:56387364-56387383 | Msa1110920:intron | 30.0% | |
TCTTTCAGTTCAAAATCAAC+TGG | - | chr7_3:56387528-56387547 | None:intergenic | 30.0% | |
! | CTTTTTATCACAATTTCCTC+TGG | - | chr7_3:56387552-56387571 | None:intergenic | 30.0% |
GTGATAAAAAGAACCATTGA+TGG | + | chr7_3:56387561-56387580 | Msa1110920:CDS | 30.0% | |
TATGCAAAACAAAGAAGAAG+AGG | + | chr7_3:56387665-56387684 | Msa1110920:CDS | 30.0% | |
AAACAAAGAAGAAGAGGTAA+TGG | + | chr7_3:56387671-56387690 | Msa1110920:CDS | 30.0% | |
!! | AGGTAATGGATGAAAGTTAT+TGG | + | chr7_3:56387685-56387704 | Msa1110920:CDS | 30.0% |
!! | CTAATACCAACTTTTGTTGT+TGG | + | chr7_3:56387828-56387847 | Msa1110920:CDS | 30.0% |
ATAAGAAAGCTAGTGAACTA+TGG | - | chr7_3:56387887-56387906 | None:intergenic | 30.0% | |
!! | AGTTCACTAGCTTTCTTATT+TGG | + | chr7_3:56387888-56387907 | Msa1110920:CDS | 30.0% |
ACAATAATCCAAGAACCAAT+GGG | - | chr7_3:56387941-56387960 | None:intergenic | 30.0% | |
! | GAGCAATTATATCTTCCTTT+TGG | - | chr7_3:56388132-56388151 | None:intergenic | 30.0% |
TCTTCAATAGTTGCAATGAA+TGG | - | chr7_3:56388156-56388175 | None:intergenic | 30.0% | |
AGAAAGCTCACACAAATTAA+TGG | - | chr7_3:56388257-56388276 | None:intergenic | 30.0% | |
!! | AGTTTCTTTGAGGTTAAATG+TGG | - | chr7_3:56388353-56388372 | None:intergenic | 30.0% |
AATTGAATGTTGCAAGGAAA+AGG | + | chr7_3:56388427-56388446 | Msa1110920:CDS | 30.0% | |
ATTGAATGTTGCAAGGAAAA+GGG | + | chr7_3:56388428-56388447 | Msa1110920:CDS | 30.0% | |
TAGATGAAATAAAAACCACC+CGG | + | chr7_3:56388552-56388571 | Msa1110920:three_prime_UTR | 30.0% | |
ATTTCTTCGAAGAGGAGTTT+GGG | - | chr7_3:56384022-56384041 | None:intergenic | 35.0% | |
AATTTCTTCGAAGAGGAGTT+TGG | - | chr7_3:56384023-56384042 | None:intergenic | 35.0% | |
CATTCTGAATTTCTTCGAAG+AGG | - | chr7_3:56384030-56384049 | None:intergenic | 35.0% | |
AATCACACCATGAATCTGTA+GGG | + | chr7_3:56384073-56384092 | Msa1110920:five_prime_UTR | 35.0% | |
GGTGTTTGATTGTTTAAACC+TGG | + | chr7_3:56384415-56384434 | Msa1110920:intron | 35.0% | |
! | GTGTCTACAAAAGCATACAT+GGG | - | chr7_3:56384486-56384505 | None:intergenic | 35.0% |
! | AGTGTCTACAAAAGCATACA+TGG | - | chr7_3:56384487-56384506 | None:intergenic | 35.0% |
CATTACTCTTCTGATAGATC+AGG | + | chr7_3:56384567-56384586 | Msa1110920:five_prime_UTR | 35.0% | |
!! | CTTAAAATGGATGGATTGGA+TGG | + | chr7_3:56384884-56384903 | Msa1110920:intron | 35.0% |
TGGATTTGGATGTAAATGGA+TGG | - | chr7_3:56384989-56385008 | None:intergenic | 35.0% | |
! | AATCAAATGGATGGTTTGGA+TGG | - | chr7_3:56385015-56385034 | None:intergenic | 35.0% |
AGAGAGTAGAAGTCTTGATT+TGG | - | chr7_3:56385348-56385367 | None:intergenic | 35.0% | |
! | AAATACCATTTTCCACCTAG+AGG | + | chr7_3:56385451-56385470 | Msa1110920:intron | 35.0% |
ATACACTAAGCAAGTTGCTT+AGG | - | chr7_3:56385620-56385639 | None:intergenic | 35.0% | |
! | TGGTTCTGTATGAATGTTGA+TGG | - | chr7_3:56385743-56385762 | None:intergenic | 35.0% |
!! | GTAAACTGGTAATGGAAGAA+GGG | + | chr7_3:56385811-56385830 | Msa1110920:exon | 35.0% |
TAACAGCATAACCATCTTCA+AGG | - | chr7_3:56385899-56385918 | None:intergenic | 35.0% | |
!! | TCTTTCAAAAAGGTGTTACC+TGG | - | chr7_3:56385942-56385961 | None:intergenic | 35.0% |
ATTTCGACACGATGATGATT+AGG | + | chr7_3:56386384-56386403 | Msa1110920:intron | 35.0% | |
TTTCGACACGATGATGATTA+GGG | + | chr7_3:56386385-56386404 | Msa1110920:intron | 35.0% | |
AAACTGTATGTGTGGAACAA+AGG | + | chr7_3:56386482-56386501 | Msa1110920:intron | 35.0% | |
GTCCAATAAGACATACTCTA+GGG | + | chr7_3:56386657-56386676 | Msa1110920:intron | 35.0% | |
!! | CACTCTTTATCATAGTGGAT+CGG | - | chr7_3:56386696-56386715 | None:intergenic | 35.0% |
TAAGGATTCATTGTGAGTGT+GGG | - | chr7_3:56386763-56386782 | None:intergenic | 35.0% | |
!!! | CTTTGGTGAGAGTTTTTTCT+TGG | - | chr7_3:56386864-56386883 | None:intergenic | 35.0% |
TCAAGAGATAGGAAAACCAA+AGG | - | chr7_3:56386909-56386928 | None:intergenic | 35.0% | |
ACGATTTCTCAGGATATTCT+GGG | - | chr7_3:56386972-56386991 | None:intergenic | 35.0% | |
AACGATTTCTCAGGATATTC+TGG | - | chr7_3:56386973-56386992 | None:intergenic | 35.0% | |
!!! | AAATTTTTTGGATCCGTTCC+TGG | + | chr7_3:56387210-56387229 | Msa1110920:intron | 35.0% |
!!! | TTTAGCTTTTGGGTTGCATT+TGG | - | chr7_3:56387423-56387442 | None:intergenic | 35.0% |
TTGCTGCATTGAAACTTTCT+GGG | - | chr7_3:56387470-56387489 | None:intergenic | 35.0% | |
ATTGCTGCATTGAAACTTTC+TGG | - | chr7_3:56387471-56387490 | None:intergenic | 35.0% | |
AGTTTCAATGCAGCAATTGA+AGG | + | chr7_3:56387474-56387493 | Msa1110920:CDS | 35.0% | |
GTTTCAATGCAGCAATTGAA+GGG | + | chr7_3:56387475-56387494 | Msa1110920:CDS | 35.0% | |
! | TTTTGAACTGAAAGAACCAG+AGG | + | chr7_3:56387533-56387552 | Msa1110920:CDS | 35.0% |
AATTCCTAATGCTCCATCAA+TGG | - | chr7_3:56387577-56387596 | None:intergenic | 35.0% | |
!! | GAAATTTGAAGCCTTTTGCT+TGG | + | chr7_3:56387727-56387746 | Msa1110920:CDS | 35.0% |
!! | GAGAAAGCTGTTCTAGAATT+TGG | + | chr7_3:56387777-56387796 | Msa1110920:CDS | 35.0% |
CTAGAATTTGGAGAACAACA+TGG | + | chr7_3:56387789-56387808 | Msa1110920:CDS | 35.0% | |
ATTTGGAGAACAACATGGTT+TGG | + | chr7_3:56387794-56387813 | Msa1110920:CDS | 35.0% | |
AAAGGTCCAACAACAAAAGT+TGG | - | chr7_3:56387837-56387856 | None:intergenic | 35.0% | |
CACAATAATCCAAGAACCAA+TGG | - | chr7_3:56387942-56387961 | None:intergenic | 35.0% | |
AACAAATGGAATTTGCATGC+AGG | + | chr7_3:56388006-56388025 | Msa1110920:intron | 35.0% | |
CTTGAACATCCTAATCCAAA+AGG | + | chr7_3:56388114-56388133 | Msa1110920:CDS | 35.0% | |
! | CATTTGAAGTTCAGGATACT+TGG | - | chr7_3:56388199-56388218 | None:intergenic | 35.0% |
GAGGTTAAATGTGGAAACTT+AGG | - | chr7_3:56388344-56388363 | None:intergenic | 35.0% | |
TTTAACCTCAAAGAAACTCG+TGG | + | chr7_3:56388355-56388374 | Msa1110920:CDS | 35.0% | |
AAATCATATGTCGCTAGACA+TGG | + | chr7_3:56388496-56388515 | Msa1110920:three_prime_UTR | 35.0% | |
!! | CGTTTGTTATTTCAACGGAA+CGG | - | chr7_3:56388584-56388603 | None:intergenic | 35.0% |
TTTCTTCGAAGAGGAGTTTG+GGG | - | chr7_3:56384021-56384040 | None:intergenic | 40.0% | |
GAATCACACCATGAATCTGT+AGG | + | chr7_3:56384072-56384091 | Msa1110920:five_prime_UTR | 40.0% | |
AGAGAATCCCTACAGATTCA+TGG | - | chr7_3:56384083-56384102 | None:intergenic | 40.0% | |
ATGACTGACGAGTGAACAAT+CGG | - | chr7_3:56384115-56384134 | None:intergenic | 40.0% | |
GTAGACACTAGATATTGTCG+CGG | + | chr7_3:56384498-56384517 | Msa1110920:intron | 40.0% | |
GCGACAACTCTAAACTTATC+TGG | - | chr7_3:56384529-56384548 | None:intergenic | 40.0% | |
GGTTTGGATGGATATGGATT+TGG | - | chr7_3:56385003-56385022 | None:intergenic | 40.0% | |
! | ATGGATGGTTTGGATGGATA+TGG | - | chr7_3:56385009-56385028 | None:intergenic | 40.0% |
CACGAATCAAATGGATGGTT+TGG | - | chr7_3:56385019-56385038 | None:intergenic | 40.0% | |
TGCATCACGAATCAAATGGA+TGG | - | chr7_3:56385024-56385043 | None:intergenic | 40.0% | |
CGAATGCATCACGAATCAAA+TGG | - | chr7_3:56385028-56385047 | None:intergenic | 40.0% | |
! | AGCTATCGTGAAGTTTTCGT+TGG | + | chr7_3:56385107-56385126 | Msa1110920:intron | 40.0% |
CAGATGATGTGACTTTATGG+CGG | + | chr7_3:56385401-56385420 | Msa1110920:intron | 40.0% | |
GATTCATTACTTGCTCCTCT+AGG | - | chr7_3:56385469-56385488 | None:intergenic | 40.0% | |
TAATTGGAGGTGGTGTGATA+TGG | - | chr7_3:56385493-56385512 | None:intergenic | 40.0% | |
TTAAACCAAGCTATCAGTGG+AGG | - | chr7_3:56385667-56385686 | None:intergenic | 40.0% | |
AGAGTGAGGTAAACTGGTAA+TGG | + | chr7_3:56385803-56385822 | Msa1110920:exon | 40.0% | |
!! | GGTAAACTGGTAATGGAAGA+AGG | + | chr7_3:56385810-56385829 | Msa1110920:exon | 40.0% |
AAAGGAAGAGTTTGTGTGAC+TGG | + | chr7_3:56385834-56385853 | Msa1110920:CDS | 40.0% | |
!! | GTACAGGGTTTATTGGTTCA+TGG | + | chr7_3:56385859-56385878 | Msa1110920:CDS | 40.0% |
ATCAAGAGACTCCTTGAAGA+TGG | + | chr7_3:56385885-56385904 | Msa1110920:CDS | 40.0% | |
ACCACTGTTAGATCAAATCC+AGG | + | chr7_3:56385921-56385940 | Msa1110920:CDS | 40.0% | |
ACCTGGATTTGATCTAACAG+TGG | - | chr7_3:56385925-56385944 | None:intergenic | 40.0% | |
! | TATGTCTTATTGGACCGAAC+TGG | - | chr7_3:56386652-56386671 | None:intergenic | 40.0% |
GGTCCAATAAGACATACTCT+AGG | + | chr7_3:56386656-56386675 | Msa1110920:intron | 40.0% | |
CTCCCTAGAGTATGTCTTAT+TGG | - | chr7_3:56386662-56386681 | None:intergenic | 40.0% | |
CTAAGGATTCATTGTGAGTG+TGG | - | chr7_3:56386764-56386783 | None:intergenic | 40.0% | |
!! | ACTTTAGGACTAGGTGTCTT+TGG | - | chr7_3:56386881-56386900 | None:intergenic | 40.0% |
AAACCAAAGGAGGGAACTTT+AGG | - | chr7_3:56386896-56386915 | None:intergenic | 40.0% | |
GAGATAGGAAAACCAAAGGA+GGG | - | chr7_3:56386905-56386924 | None:intergenic | 40.0% | |
AGAGATAGGAAAACCAAAGG+AGG | - | chr7_3:56386906-56386925 | None:intergenic | 40.0% | |
TTTAGGGAGCTTCAAGAGAT+AGG | - | chr7_3:56386920-56386939 | None:intergenic | 40.0% | |
GACACCTATGCATGAAATTG+TGG | - | chr7_3:56387071-56387090 | None:intergenic | 40.0% | |
ATTTCCAATAGCAAACTCCG+AGG | + | chr7_3:56387096-56387115 | Msa1110920:intron | 40.0% | |
!!! | TTTTCCTCGGAGTTTGCTAT+TGG | - | chr7_3:56387103-56387122 | None:intergenic | 40.0% |
!!! | GCCCCTGTCTTCAAATTTTT+TGG | + | chr7_3:56387198-56387217 | Msa1110920:intron | 40.0% |
AGAATGTGTTTGACCAGGAA+CGG | - | chr7_3:56387226-56387245 | None:intergenic | 40.0% | |
TTGCATTTGGAAGATCTGTG+AGG | - | chr7_3:56387410-56387429 | None:intergenic | 40.0% | |
! | AGAACCATTGATGGAGCATT+AGG | + | chr7_3:56387570-56387589 | Msa1110920:CDS | 40.0% |
ACAGCATATGACCAAGCAAA+AGG | - | chr7_3:56387741-56387760 | None:intergenic | 40.0% | |
GGTAGCTTAGGACAAATGAA+AGG | - | chr7_3:56387855-56387874 | None:intergenic | 40.0% | |
TTCATTTGTCCTAAGCTACC+TGG | + | chr7_3:56387855-56387874 | Msa1110920:CDS | 40.0% | |
CTTCTTACCATGTTTCCCAT+TGG | + | chr7_3:56387923-56387942 | Msa1110920:intron | 40.0% | |
GTACGAGATACAAGCACTAA+TGG | - | chr7_3:56388048-56388067 | None:intergenic | 40.0% | |
TTAGTGCTTGTATCTCGTAC+CGG | + | chr7_3:56388048-56388067 | Msa1110920:CDS | 40.0% | |
ATCATCAACATGCACCATAC+CGG | - | chr7_3:56388070-56388089 | None:intergenic | 40.0% | |
!! | TATGGTGCATGTTGATGATG+TGG | + | chr7_3:56388071-56388090 | Msa1110920:CDS | 40.0% |
CAGGATACTTGGAAGAAACA+AGG | - | chr7_3:56388188-56388207 | None:intergenic | 40.0% | |
! | GATGTTGGCATTTGAAGTTC+AGG | - | chr7_3:56388207-56388226 | None:intergenic | 40.0% |
TGTAGAACTCACTTGGATGT+TGG | - | chr7_3:56388222-56388241 | None:intergenic | 40.0% | |
! | TTCATCTTCTAGGGAGCTTA+TGG | + | chr7_3:56388307-56388326 | Msa1110920:intron | 40.0% |
! | TCATCTTCTAGGGAGCTTAT+GGG | + | chr7_3:56388308-56388327 | Msa1110920:intron | 40.0% |
ATCATCCACGAGTTTCTTTG+AGG | - | chr7_3:56388363-56388382 | None:intergenic | 40.0% | |
TCAAAGAAACTCGTGGATGA+TGG | + | chr7_3:56388362-56388381 | Msa1110920:CDS | 40.0% | |
! | TAGCCTTGAGGAAATGTTTG+AGG | + | chr7_3:56388400-56388419 | Msa1110920:CDS | 40.0% |
!! | AGTGGATTGTAAAGGGACCA+TGG | + | chr7_3:56384951-56384970 | Msa1110920:intron | 45.0% |
GTAACACCTTAGGCTTAGCT+AGG | + | chr7_3:56385167-56385186 | Msa1110920:intron | 45.0% | |
ACCTTAGGCTTAGCTAGGTA+TGG | + | chr7_3:56385172-56385191 | Msa1110920:intron | 45.0% | |
TCCATACCTAGCTAAGCCTA+AGG | - | chr7_3:56385176-56385195 | None:intergenic | 45.0% | |
TTGCTCCTCTAGGTGGAAAA+TGG | - | chr7_3:56385459-56385478 | None:intergenic | 45.0% | |
TCATTACTTGCTCCTCTAGG+TGG | - | chr7_3:56385466-56385485 | None:intergenic | 45.0% | |
GCAATCGGCAAGGAGAAATA+TGG | + | chr7_3:56385533-56385552 | Msa1110920:intron | 45.0% | |
CAATTCCTCCACTGATAGCT+TGG | + | chr7_3:56385659-56385678 | Msa1110920:five_prime_UTR | 45.0% | |
GGAAGAAGAGTGAGGTAAAC+TGG | + | chr7_3:56385797-56385816 | Msa1110920:five_prime_UTR | 45.0% | |
!! | CTGGTAATGGAAGAAGGGAA+AGG | + | chr7_3:56385816-56385835 | Msa1110920:exon | 45.0% |
! | TTTGTGTGACTGGAGGTACA+GGG | + | chr7_3:56385844-56385863 | Msa1110920:CDS | 45.0% |
! | ACTGGAGGTACAGGGTTTAT+TGG | + | chr7_3:56385852-56385871 | Msa1110920:CDS | 45.0% |
TTGGGTAGTGAGATCTCAAG+AGG | - | chr7_3:56386818-56386837 | None:intergenic | 45.0% | |
TCTTGAGATCTCACTACCCA+AGG | + | chr7_3:56386817-56386836 | Msa1110920:intron | 45.0% | |
!! | AAGGAGGGAACTTTAGGACT+AGG | - | chr7_3:56386890-56386909 | None:intergenic | 45.0% |
AGTCCTAAAGTTCCCTCCTT+TGG | + | chr7_3:56386890-56386909 | Msa1110920:intron | 45.0% | |
CAATCGTGGAACGATTTCTC+AGG | - | chr7_3:56386982-56387001 | None:intergenic | 45.0% | |
CTGAGAAATCGTTCCACGAT+TGG | + | chr7_3:56386980-56386999 | Msa1110920:intron | 45.0% | |
ACAACAAATCGTGGCACGAT+GGG | - | chr7_3:56387008-56387027 | None:intergenic | 45.0% | |
AACAACAAATCGTGGCACGA+TGG | - | chr7_3:56387009-56387028 | None:intergenic | 45.0% | |
!! | ATCGTGCCACGATTTGTTGT+TGG | + | chr7_3:56387008-56387027 | Msa1110920:intron | 45.0% |
GGTGTACCAACAACAAATCG+TGG | - | chr7_3:56387017-56387036 | None:intergenic | 45.0% | |
CGTGCCACAATTTCATGCAT+AGG | + | chr7_3:56387064-56387083 | Msa1110920:intron | 45.0% | |
GGATGAGAATGTGTTTGACC+AGG | - | chr7_3:56387231-56387250 | None:intergenic | 45.0% | |
AATCAACTGGAGTAGCTGTG+TGG | - | chr7_3:56387515-56387534 | None:intergenic | 45.0% | |
AGTGAACTATGGACAGATCC+AGG | - | chr7_3:56387876-56387895 | None:intergenic | 45.0% | |
CCAAGAACCAATGGGAAACA+TGG | - | chr7_3:56387933-56387952 | None:intergenic | 45.0% | |
!! | CCATGTTTCCCATTGGTTCT+TGG | + | chr7_3:56387930-56387949 | Msa1110920:intron | 45.0% |
AGGGAGCTTATGGGAGTTAA+AGG | + | chr7_3:56388317-56388336 | Msa1110920:intron | 45.0% | |
! | CGAGTTCAAGTATAGCCTTG+AGG | + | chr7_3:56388388-56388407 | Msa1110920:CDS | 45.0% |
CGTCCTCAAACATTTCCTCA+AGG | - | chr7_3:56388406-56388425 | None:intergenic | 45.0% | |
GGACGCAATTGAATGTTGCA+AGG | + | chr7_3:56388421-56388440 | Msa1110920:CDS | 45.0% | |
!!! | ATAAAAAAAAATATTCATTT+TGG | + | chr7_3:56384799-56384818 | Msa1110920:intron | 5.0% |
!! | ATGAAATTAAAAAAAATATA+TGG | + | chr7_3:56384833-56384852 | Msa1110920:intron | 5.0% |
ACTGACGAGTGAACAATCGG+TGG | - | chr7_3:56384112-56384131 | None:intergenic | 50.0% | |
TTAGGAACGTGCAATCGGCA+AGG | + | chr7_3:56385523-56385542 | Msa1110920:intron | 50.0% | |
GGAAGAGTTTGTGTGACTGG+AGG | + | chr7_3:56385837-56385856 | Msa1110920:CDS | 50.0% | |
! | GTTTGTGTGACTGGAGGTAC+AGG | + | chr7_3:56385843-56385862 | Msa1110920:CDS | 50.0% |
! | GCAGCAATTGAAGGGTGCAT+TGG | + | chr7_3:56387483-56387502 | Msa1110920:CDS | 50.0% |
!! | ACACACAGCAGAAGCACTTG+AGG | - | chr7_3:56387646-56387665 | None:intergenic | 50.0% |
TGGACAGATCCAGGTAGCTT+AGG | - | chr7_3:56387867-56387886 | None:intergenic | 50.0% | |
! | GCTTGTATCTCGTACCGGTA+TGG | + | chr7_3:56388053-56388072 | Msa1110920:CDS | 50.0% |
!! | TTCAACGGAACGGATTGCAC+CGG | - | chr7_3:56388574-56388593 | None:intergenic | 50.0% |
!! | TCAACGGAACGGATTGCACC+GGG | - | chr7_3:56388573-56388592 | None:intergenic | 55.0% |
AGAGTTGTCGCACTCGCAGC+TGG | + | chr7_3:56384538-56384557 | Msa1110920:five_prime_UTR | 60.0% | |
GGCACGATGGGTGCCAATCG+TGG | - | chr7_3:56386996-56387015 | None:intergenic | 65.0% | |
!! | ACGGAACGGATTGCACCGGG+TGG | - | chr7_3:56388570-56388589 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 56384003 | 56388622 | 56384003 | ID=Msa1110920;Name=Msa1110920 |
chr7_3 | mRNA | 56384003 | 56388622 | 56384003 | ID=Msa1110920-mRNA-1;Parent=Msa1110920;Name=Msa1110920-mRNA-1;_AED=0.23;_eAED=0.23;_QI=425|1|1|1|0.8|0.83|6|162|329 |
chr7_3 | exon | 56384003 | 56384164 | 56384003 | ID=Msa1110920-mRNA-1:exon:11881;Parent=Msa1110920-mRNA-1 |
chr7_3 | exon | 56384502 | 56384588 | 56384502 | ID=Msa1110920-mRNA-1:exon:11882;Parent=Msa1110920-mRNA-1 |
chr7_3 | exon | 56385646 | 56385942 | 56385646 | ID=Msa1110920-mRNA-1:exon:11883;Parent=Msa1110920-mRNA-1 |
chr7_3 | exon | 56387385 | 56387909 | 56387385 | ID=Msa1110920-mRNA-1:exon:11884;Parent=Msa1110920-mRNA-1 |
chr7_3 | exon | 56388028 | 56388229 | 56388028 | ID=Msa1110920-mRNA-1:exon:11885;Parent=Msa1110920-mRNA-1 |
chr7_3 | exon | 56388319 | 56388622 | 56388319 | ID=Msa1110920-mRNA-1:exon:11886;Parent=Msa1110920-mRNA-1 |
chr7_3 | five_prime_UTR | 56384003 | 56384164 | 56384003 | ID=Msa1110920-mRNA-1:five_prime_utr;Parent=Msa1110920-mRNA-1 |
chr7_3 | five_prime_UTR | 56384502 | 56384588 | 56384502 | ID=Msa1110920-mRNA-1:five_prime_utr;Parent=Msa1110920-mRNA-1 |
chr7_3 | five_prime_UTR | 56385646 | 56385821 | 56385646 | ID=Msa1110920-mRNA-1:five_prime_utr;Parent=Msa1110920-mRNA-1 |
chr7_3 | CDS | 56385822 | 56385942 | 56385822 | ID=Msa1110920-mRNA-1:cds;Parent=Msa1110920-mRNA-1 |
chr7_3 | CDS | 56387385 | 56387909 | 56387385 | ID=Msa1110920-mRNA-1:cds;Parent=Msa1110920-mRNA-1 |
chr7_3 | CDS | 56388028 | 56388229 | 56388028 | ID=Msa1110920-mRNA-1:cds;Parent=Msa1110920-mRNA-1 |
chr7_3 | CDS | 56388319 | 56388460 | 56388319 | ID=Msa1110920-mRNA-1:cds;Parent=Msa1110920-mRNA-1 |
chr7_3 | three_prime_UTR | 56388461 | 56388622 | 56388461 | ID=Msa1110920-mRNA-1:three_prime_utr;Parent=Msa1110920-mRNA-1 |
Gene Sequence |
Protein sequence |