AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1110920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1110920 MtrunA17_Chr7g0245671 95.137 329 16 0 1 329 1 329 0.0 651
Msa1110920 MtrunA17_Chr7g0245691 89.394 330 34 1 1 329 1 330 0.0 613
Msa1110920 MtrunA17_Chr7g0245641 88.182 330 37 2 1 329 38 366 0.0 603
Msa1110920 MtrunA17_Chr7g0245741 76.596 329 74 2 1 329 1 326 0.0 533
Msa1110920 MtrunA17_Chr7g0245731 75.076 329 79 2 1 329 51 376 0.0 516
Msa1110920 MtrunA17_Chr7g0245631 67.477 329 104 1 1 329 1 326 1.27e-169 474
Msa1110920 MtrunA17_Chr7g0245711 73.611 288 73 2 42 329 4 288 5.82e-157 441
Msa1110920 MtrunA17_Chr4g0010991 49.547 331 163 3 1 329 1 329 1.85e-107 317
Msa1110920 MtrunA17_Chr1g0155411 47.095 327 159 4 8 329 8 325 1.99e-101 301
Msa1110920 MtrunA17_Chr1g0155431 47.401 327 158 4 8 329 8 325 2.76e-99 296
Msa1110920 MtrunA17_Chr4g0048961 42.515 334 181 6 1 327 7 336 2.38e-81 250
Msa1110920 MtrunA17_Chr4g0042101 37.647 340 188 10 6 329 22 353 6.45e-70 221
Msa1110920 MtrunA17_Chr2g0331211 38.344 326 188 9 7 329 4 319 8.43e-67 213
Msa1110920 MtrunA17_Chr8g0363831 37.576 330 191 7 1 326 1 319 4.93e-62 200
Msa1110920 MtrunA17_Chr3g0077231 36.086 327 192 7 8 329 6 320 7.56e-62 199
Msa1110920 MtrunA17_Chr5g0423551 36.923 325 191 8 9 329 5 319 8.50e-61 197
Msa1110920 MtrunA17_Chr2g0281991 35.694 353 190 9 1 329 1 340 6.94e-59 192
Msa1110920 MtrunA17_Chr8g0364051 37.273 330 192 8 4 329 3 321 1.35e-58 191
Msa1110920 MtrunA17_Chr4g0039321 35.608 337 193 11 1 328 1 322 2.97e-57 188
Msa1110920 MtrunA17_Chr3g0077221 34.969 326 195 8 8 328 10 323 6.38e-57 187
Msa1110920 MtrunA17_Chr3g0106111 34.848 330 192 10 8 329 5 319 4.20e-54 179
Msa1110920 MtrunA17_Chr2g0282001 35.227 352 185 10 3 327 2 337 4.49e-53 177
Msa1110920 MtrunA17_Chr4g0039311 34.859 284 173 6 1 280 3 278 4.01e-51 172
Msa1110920 MtrunA17_Chr2g0282011 35.613 351 189 10 1 327 1 338 7.13e-51 172
Msa1110920 MtrunA17_Chr5g0431311 36.254 331 186 10 8 329 5 319 1.94e-50 170
Msa1110920 MtrunA17_Chr4g0002661 34.862 327 194 10 7 329 12 323 5.84e-50 169
Msa1110920 MtrunA17_Chr2g0333781 36.196 326 188 13 8 329 20 329 4.38e-47 162
Msa1110920 MtrunA17_Chr4g0001321 34.242 330 197 12 4 329 13 326 5.32e-47 161
Msa1110920 MtrunA17_Chr7g0275521 33.046 348 203 10 3 329 2 340 2.72e-46 160
Msa1110920 MtrunA17_Chr4g0002961 33.538 325 201 8 7 329 12 323 2.09e-43 152
Msa1110920 MtrunA17_Chr2g0291541 33.136 338 189 13 8 329 10 326 6.86e-43 150
Msa1110920 MtrunA17_Chr6g0450211 29.588 267 157 10 4 256 51 300 1.25e-23 99.8
Msa1110920 MtrunA17_Chr5g0411071 27.857 280 162 10 8 275 12 263 1.71e-23 98.2
Msa1110920 MtrunA17_Chr7g0245701 86.047 43 6 0 1 43 1 43 4.49e-22 87.4
Msa1110920 MtrunA17_Chr3g0133771 27.675 271 164 9 7 271 3 247 1.19e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1110920 AT2G45400.1 52.121 330 149 5 6 329 38 364 7.66e-109 322
Msa1110920 AT5G42800.1 49.398 332 158 5 1 329 1 325 4.03e-102 305
Msa1110920 AT2G45400.2 52.837 282 125 4 6 281 38 317 8.91e-96 287
Msa1110920 AT2G45400.3 51.020 294 136 4 41 329 17 307 4.94e-91 274
Msa1110920 AT4G35420.1 41.390 331 182 7 1 329 1 321 5.13e-83 254
Msa1110920 AT1G61720.1 40.541 333 187 6 4 329 9 337 9.75e-77 239
Msa1110920 AT2G45400.4 55.300 217 91 3 6 216 38 254 2.54e-74 229
Msa1110920 AT1G68540.1 39.077 325 184 8 10 329 6 321 5.62e-62 200
Msa1110920 AT1G09480.2 38.739 333 189 9 1 329 1 322 2.59e-60 196
Msa1110920 AT1G09480.1 38.739 333 189 9 1 329 48 369 9.62e-60 196
Msa1110920 AT2G02400.1 36.716 335 185 11 4 329 2 318 1.03e-58 192
Msa1110920 AT1G25460.1 37.346 324 189 7 10 329 6 319 1.38e-58 191
Msa1110920 AT1G51410.1 34.139 331 203 7 3 329 4 323 3.09e-58 191
Msa1110920 AT1G09490.1 36.747 332 197 8 1 329 1 322 1.15e-57 189
Msa1110920 AT5G19440.1 36.556 331 192 9 4 328 5 323 5.33e-57 187
Msa1110920 AT1G09510.1 37.651 332 188 8 1 326 1 319 2.28e-56 186
Msa1110920 AT5G58490.1 37.462 331 182 11 8 329 9 323 5.15e-56 185
Msa1110920 AT4G27250.1 32.344 337 207 6 2 321 6 338 7.03e-56 186
Msa1110920 AT4G27250.2 31.845 336 200 6 2 321 6 328 1.93e-55 184
Msa1110920 AT1G66800.1 37.003 327 194 9 4 329 3 318 9.11e-55 181
Msa1110920 AT1G09500.3 37.367 281 164 6 1 277 1 273 3.77e-52 174
Msa1110920 AT1G09500.1 37.153 288 169 7 1 284 1 280 1.11e-51 174
Msa1110920 AT1G15950.3 37.423 326 184 13 8 329 13 322 6.35e-50 170
Msa1110920 AT1G15950.1 37.423 326 184 13 8 329 13 322 6.35e-50 170
Msa1110920 AT1G76470.1 35.849 318 194 6 5 320 4 313 7.91e-49 166
Msa1110920 AT1G15950.2 36.859 312 182 9 8 317 13 311 3.29e-47 162
Msa1110920 AT2G33590.1 34.259 324 189 9 5 321 6 312 9.38e-46 158
Msa1110920 AT1G15950.5 38.989 277 154 9 8 282 13 276 1.32e-45 157
Msa1110920 AT1G15950.6 39.130 276 153 9 8 281 13 275 1.41e-45 156
Msa1110920 AT1G80820.1 35.168 327 190 13 8 329 8 317 1.78e-45 158
Msa1110920 AT1G15950.4 38.989 277 154 9 8 282 13 276 2.44e-45 156
Msa1110920 AT2G33600.1 36.728 324 181 11 5 321 6 312 6.12e-45 156
Msa1110920 AT1G09490.2 33.893 298 185 7 35 329 3 291 2.18e-42 149
Msa1110920 AT1G80820.2 36.101 277 160 9 8 281 8 270 2.45e-41 145
Msa1110920 AT1G09500.2 34.400 250 153 6 39 284 4 246 5.09e-36 132
Msa1110920 AT1G68540.2 35.586 222 131 6 112 329 1 214 1.70e-32 120
Msa1110920 AT2G23910.1 27.036 307 200 11 9 306 11 302 3.08e-28 111
Msa1110920 AT2G23910.3 26.882 279 184 9 9 282 11 274 9.38e-27 107
Msa1110920 AT2G23910.2 26.715 277 183 9 9 280 11 272 1.52e-26 106
Msa1110920 AT4G30470.1 25.887 282 186 9 9 284 11 275 8.85e-25 102
Msa1110920 AT5G14700.1 29.710 276 154 10 2 256 49 305 7.02e-23 98.2
Msa1110920 AT1G15950.7 32.479 234 144 9 100 329 1 224 9.50e-23 95.5
Msa1110920 AT5G14700.2 29.289 239 139 7 2 224 49 273 1.19e-20 90.5
Msa1110920 AT4G33360.3 27.338 278 178 7 7 280 2 259 7.25e-19 86.3
Msa1110920 AT4G33360.2 26.962 293 160 9 7 280 14 271 8.81e-19 85.5
Msa1110920 AT4G33360.1 27.338 278 178 7 7 280 14 271 1.14e-18 85.9
Msa1110920 AT2G23910.4 25.373 268 175 11 49 306 16 268 4.00e-18 83.2

Find 94 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCTGCATTGAAACTTTC+TGG 0.117961 7_3:-56387468 None:intergenic
AGTTCACTAGCTTTCTTATT+TGG 0.183198 7_3:+56387888 Msa1110920:CDS
GAGAAAGCTGTTCTAGAATT+TGG 0.187155 7_3:+56387777 Msa1110920:CDS
CATTGAAAATATTTAGCTTT+TGG 0.212269 7_3:-56387431 None:intergenic
TTCATCTTCTAGGGAGCTTA+TGG 0.214503 7_3:+56388307 Msa1110920:intron
TGAAGTGTGAAAATATATTT+TGG 0.227942 7_3:+56385776 Msa1110920:five_prime_UTR
GAGCAATTATATCTTCCTTT+TGG 0.266827 7_3:-56388129 None:intergenic
AGGGAGCTTATGGGAGTTAA+AGG 0.281801 7_3:+56388317 Msa1110920:intron
ACTGGAGGTACAGGGTTTAT+TGG 0.300052 7_3:+56385852 Msa1110920:CDS
AATTTCTTCGAAGAGGAGTT+TGG 0.311161 7_3:-56384020 None:intergenic
GGAAGAAGAGTGAGGTAAAC+TGG 0.317241 7_3:+56385797 Msa1110920:five_prime_UTR
AGAACCATTGATGGAGCATT+AGG 0.319772 7_3:+56387570 Msa1110920:CDS
GCGACAACTCTAAACTTATC+TGG 0.329796 7_3:-56384526 None:intergenic
GATGTTGGCATTTGAAGTTC+AGG 0.351951 7_3:-56388204 None:intergenic
AGGTAATGGATGAAAGTTAT+TGG 0.353449 7_3:+56387685 Msa1110920:CDS
CATTTGAAGTTCAGGATACT+TGG 0.362756 7_3:-56388196 None:intergenic
ATTTGGAGAACAACATGGTT+TGG 0.364972 7_3:+56387794 Msa1110920:CDS
ATTTCTTCGAAGAGGAGTTT+GGG 0.369905 7_3:-56384019 None:intergenic
AATTGAATGTTGCAAGGAAA+AGG 0.371801 7_3:+56388427 Msa1110920:CDS
ATAAGAAAGCTAGTGAACTA+TGG 0.381083 7_3:-56387884 None:intergenic
GTACAGGGTTTATTGGTTCA+TGG 0.397157 7_3:+56385859 Msa1110920:CDS
GAGGTTAAATGTGGAAACTT+AGG 0.398400 7_3:-56388341 None:intergenic
TTGCTGCATTGAAACTTTCT+GGG 0.400104 7_3:-56387467 None:intergenic
TGGTTCTGTATGAATGTTGA+TGG 0.405495 7_3:-56385740 None:intergenic
CAATTCCTCCACTGATAGCT+TGG 0.413382 7_3:+56385659 Msa1110920:five_prime_UTR
TCTTTCAGTTCAAAATCAAC+TGG 0.415670 7_3:-56387525 None:intergenic
TCATCTTCTAGGGAGCTTAT+GGG 0.418457 7_3:+56388308 Msa1110920:intron
AGAGAATCCCTACAGATTCA+TGG 0.420871 7_3:-56384080 None:intergenic
TCTTCAATAGTTGCAATGAA+TGG 0.434791 7_3:-56388153 None:intergenic
AAAGGAAGAGTTTGTGTGAC+TGG 0.438296 7_3:+56385834 Msa1110920:CDS
GTTTGTGTGACTGGAGGTAC+AGG 0.443705 7_3:+56385843 Msa1110920:CDS
ATCATCCACGAGTTTCTTTG+AGG 0.447908 7_3:-56388360 None:intergenic
AGAGTGAGGTAAACTGGTAA+TGG 0.454760 7_3:+56385803 Msa1110920:exon
GTACGAGATACAAGCACTAA+TGG 0.458074 7_3:-56388045 None:intergenic
AATTCCTAATGCTCCATCAA+TGG 0.462695 7_3:-56387574 None:intergenic
AGTTTCAATGCAGCAATTGA+AGG 0.465129 7_3:+56387474 Msa1110920:CDS
TTCATTTGTCCTAAGCTACC+TGG 0.469552 7_3:+56387855 Msa1110920:CDS
AGAGTTGTCGCACTCGCAGC+TGG 0.472060 7_3:+56384538 Msa1110920:five_prime_UTR
TAACAGCATAACCATCTTCA+AGG 0.473218 7_3:-56385896 None:intergenic
AAACAAAGAAGAAGAGGTAA+TGG 0.474396 7_3:+56387671 Msa1110920:CDS
ATCAAGAGACTCCTTGAAGA+TGG 0.485072 7_3:+56385885 Msa1110920:CDS
TCAAAGAAACTCGTGGATGA+TGG 0.487540 7_3:+56388362 Msa1110920:CDS
CTTGAACATCCTAATCCAAA+AGG 0.495386 7_3:+56388114 Msa1110920:CDS
ATTGAATGTTGCAAGGAAAA+GGG 0.495429 7_3:+56388428 Msa1110920:CDS
GCAGCAATTGAAGGGTGCAT+TGG 0.498418 7_3:+56387483 Msa1110920:CDS
GGTAAACTGGTAATGGAAGA+AGG 0.500176 7_3:+56385810 Msa1110920:exon
AACGAATAATTTAATGAATG+AGG 0.503416 7_3:+56388600 Msa1110920:three_prime_UTR
TGGACAGATCCAGGTAGCTT+AGG 0.512154 7_3:-56387864 None:intergenic
ACAGCATATGACCAAGCAAA+AGG 0.516501 7_3:-56387738 None:intergenic
TAGCCTTGAGGAAATGTTTG+AGG 0.521228 7_3:+56388400 Msa1110920:CDS
CATTCTGAATTTCTTCGAAG+AGG 0.522209 7_3:-56384027 None:intergenic
CATTACTCTTCTGATAGATC+AGG 0.523314 7_3:+56384567 Msa1110920:five_prime_UTR
CAAAATCAGAAAATTCGAAT+CGG 0.525041 7_3:-56384137 None:intergenic
AAAGGTCCAACAACAAAAGT+TGG 0.534220 7_3:-56387834 None:intergenic
GCTTGTATCTCGTACCGGTA+TGG 0.538328 7_3:+56388053 Msa1110920:CDS
AGTGAACTATGGACAGATCC+AGG 0.545594 7_3:-56387873 None:intergenic
TCAACGGAACGGATTGCACC+GGG 0.546953 7_3:-56388570 None:intergenic
GTAAACTGGTAATGGAAGAA+GGG 0.549489 7_3:+56385811 Msa1110920:exon
TATGCAAAACAAAGAAGAAG+AGG 0.554133 7_3:+56387665 Msa1110920:CDS
TGTAGAACTCACTTGGATGT+TGG 0.557000 7_3:-56388219 None:intergenic
ATCATCAACATGCACCATAC+CGG 0.559899 7_3:-56388067 None:intergenic
GAATCACACCATGAATCTGT+AGG 0.561058 7_3:+56384072 Msa1110920:five_prime_UTR
AGTTTCTTTGAGGTTAAATG+TGG 0.564214 7_3:-56388350 None:intergenic
GTTTCAATGCAGCAATTGAA+GGG 0.573950 7_3:+56387475 Msa1110920:CDS
ACCACTGTTAGATCAAATCC+AGG 0.579008 7_3:+56385921 Msa1110920:CDS
TTATTCGTTTGTTATTTCAA+CGG 0.579253 7_3:-56388586 None:intergenic
ATGACTGACGAGTGAACAAT+CGG 0.583779 7_3:-56384112 None:intergenic
TTCAACGGAACGGATTGCAC+CGG 0.584524 7_3:-56388571 None:intergenic
AAATCATATGTCGCTAGACA+TGG 0.587909 7_3:+56388496 Msa1110920:three_prime_UTR
CTAGAATTTGGAGAACAACA+TGG 0.590067 7_3:+56387789 Msa1110920:CDS
CGTCCTCAAACATTTCCTCA+AGG 0.591440 7_3:-56388403 None:intergenic
AATCACACCATGAATCTGTA+GGG 0.593495 7_3:+56384073 Msa1110920:five_prime_UTR
CAGGATACTTGGAAGAAACA+AGG 0.598723 7_3:-56388185 None:intergenic
TTAGTGCTTGTATCTCGTAC+CGG 0.600363 7_3:+56388048 Msa1110920:CDS
CGTTTGTTATTTCAACGGAA+CGG 0.604015 7_3:-56388581 None:intergenic
GGACGCAATTGAATGTTGCA+AGG 0.609289 7_3:+56388421 Msa1110920:CDS
ACACACAGCAGAAGCACTTG+AGG 0.617963 7_3:-56387643 None:intergenic
CTGGTAATGGAAGAAGGGAA+AGG 0.621681 7_3:+56385816 Msa1110920:exon
TTTAACCTCAAAGAAACTCG+TGG 0.633314 7_3:+56388355 Msa1110920:CDS
TTTGTGTGACTGGAGGTACA+GGG 0.633409 7_3:+56385844 Msa1110920:CDS
TTAAACCAAGCTATCAGTGG+AGG 0.635009 7_3:-56385664 None:intergenic
TATGGTGCATGTTGATGATG+TGG 0.643007 7_3:+56388071 Msa1110920:CDS
AAATTAAACCAAGCTATCAG+TGG 0.653893 7_3:-56385667 None:intergenic
GAAGAAATTCAGAATGACAT+CGG 0.657645 7_3:+56384034 Msa1110920:five_prime_UTR
ACCTGGATTTGATCTAACAG+TGG 0.666953 7_3:-56385922 None:intergenic
TTTCTTCGAAGAGGAGTTTG+GGG 0.667797 7_3:-56384018 None:intergenic
CGAGTTCAAGTATAGCCTTG+AGG 0.673632 7_3:+56388388 Msa1110920:CDS
AATCAACTGGAGTAGCTGTG+TGG 0.675600 7_3:-56387512 None:intergenic
GGTAGCTTAGGACAAATGAA+AGG 0.676303 7_3:-56387852 None:intergenic
ACGGAACGGATTGCACCGGG+TGG 0.680244 7_3:-56388567 None:intergenic
GTAGACACTAGATATTGTCG+CGG 0.698614 7_3:+56384498 Msa1110920:intron
ACTGACGAGTGAACAATCGG+TGG 0.698745 7_3:-56384109 None:intergenic
GGAAGAGTTTGTGTGACTGG+AGG 0.702220 7_3:+56385837 Msa1110920:CDS
TTGCATTTGGAAGATCTGTG+AGG 0.788148 7_3:-56387407 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAAAAAATATATGGA+TGG + chr7_3:56384837-56384856 Msa1110920:intron 10.0%
!!! ATTATTTTAAAAAAATTGAG+TGG + chr7_3:56384933-56384952 Msa1110920:intron 10.0%
!! TAAATTAAAAATTTAATTGG+AGG - chr7_3:56385506-56385525 None:intergenic 10.0%
!!! TCCAATTAAATTTTTAATTT+AGG + chr7_3:56385505-56385524 Msa1110920:intron 10.0%
!! TCCTAAATTAAAAATTTAAT+TGG - chr7_3:56385509-56385528 None:intergenic 10.0%
!! AATTGATAAAAATTAACAAA+TGG + chr7_3:56387992-56388011 Msa1110920:intron 10.0%
!!! ATTTTAGTGTTTTTTGAAAT+GGG + chr7_3:56384170-56384189 Msa1110920:intron 15.0%
!!! ATTTTAAGTTTTTTAATGGA+TGG - chr7_3:56384872-56384891 None:intergenic 15.0%
!! ATCCATTAAAAAACTTAAAA+TGG + chr7_3:56384871-56384890 Msa1110920:intron 15.0%
!!! ATCCATTTTAAGTTTTTTAA+TGG - chr7_3:56384876-56384895 None:intergenic 15.0%
!! ATTAAAAAACTTAAAATGGA+TGG + chr7_3:56384875-56384894 Msa1110920:intron 15.0%
!!! GATTTTTTTTTCTTTCAAAA+AGG - chr7_3:56385952-56385971 None:intergenic 15.0%
!!! ATCTAAAACAAAATTTTAGA+AGG - chr7_3:56386262-56386281 None:intergenic 15.0%
!! AGTGTAAAAATCTAATATAA+TGG + chr7_3:56386292-56386311 Msa1110920:intron 15.0%
!!! TTCAATTCTTCATTTTTTTA+GGG - chr7_3:56386936-56386955 None:intergenic 15.0%
!!! AGATTTTATATGTTGAAATT+TGG - chr7_3:56387177-56387196 None:intergenic 15.0%
!! TAACAACAAATAAACAAAAT+TGG - chr7_3:56387306-56387325 None:intergenic 15.0%
!!! ATTGAAAATATTTAGCTTTT+GGG - chr7_3:56387433-56387452 None:intergenic 15.0%
!!! GATTTTAGTGTTTTTTGAAA+TGG + chr7_3:56384169-56384188 Msa1110920:intron 20.0%
!!! CATGTAATCAAATTTTGAAT+TGG + chr7_3:56384608-56384627 Msa1110920:intron 20.0%
!! AAAAAAATATATGGATGGAT+TGG + chr7_3:56384842-56384861 Msa1110920:intron 20.0%
!! ATCATCCAAAAAAAATTCAA+TGG - chr7_3:56385078-56385097 None:intergenic 20.0%
!! ATTCTTTACATATTTCTTCT+AGG + chr7_3:56385219-56385238 Msa1110920:intron 20.0%
!!! TATATGTAGTTGCATTTTAA+AGG - chr7_3:56385253-56385272 None:intergenic 20.0%
!! ATTAAAAATTTAATTGGAGG+TGG - chr7_3:56385503-56385522 None:intergenic 20.0%
!!! TGAAGTGTGAAAATATATTT+TGG + chr7_3:56385776-56385795 Msa1110920:five_prime_UTR 20.0%
!!! CTTCAATTCTTCATTTTTTT+AGG - chr7_3:56386937-56386956 None:intergenic 20.0%
!!! TGATTTGAATTTTAGTTAAG+AGG - chr7_3:56387279-56387298 None:intergenic 20.0%
!!! CATTGAAAATATTTAGCTTT+TGG - chr7_3:56387434-56387453 None:intergenic 20.0%
!!! TTATTCGTTTGTTATTTCAA+CGG - chr7_3:56388589-56388608 None:intergenic 20.0%
! CAAAATCAGAAAATTCGAAT+CGG - chr7_3:56384140-56384159 None:intergenic 25.0%
!! CGAATTTTCTGATTTTGTAA+AGG + chr7_3:56384143-56384162 Msa1110920:five_prime_UTR 25.0%
!! ATTGTTGAGTTTTCTGAATT+GGG + chr7_3:56384242-56384261 Msa1110920:intron 25.0%
! GTTATAATTGAATAGATGAC+AGG + chr7_3:56384389-56384408 Msa1110920:intron 25.0%
!!! AGTTTTAAGAAAACAGAAAC+TGG - chr7_3:56384666-56384685 None:intergenic 25.0%
!! TTTCTGTTTTCTTAAAACTC+AGG + chr7_3:56384667-56384686 Msa1110920:intron 25.0%
! AAAACTTAAAATGGATGGAT+TGG + chr7_3:56384880-56384899 Msa1110920:intron 25.0%
!!! TGGATGGATTTTATTTTTCA+TGG + chr7_3:56384900-56384919 Msa1110920:intron 25.0%
!!! GGATTTTATTTTTCATGGAT+TGG + chr7_3:56384905-56384924 Msa1110920:intron 25.0%
!!! TTATTTTTCATGGATTGGAT+TGG + chr7_3:56384910-56384929 Msa1110920:intron 25.0%
!!! AAAAATTGAGTGGATTGTAA+AGG + chr7_3:56384943-56384962 Msa1110920:intron 25.0%
!!! AAAATTGAGTGGATTGTAAA+GGG + chr7_3:56384944-56384963 Msa1110920:intron 25.0%
! GATGGATAAAAAAATATCCA+TGG - chr7_3:56384971-56384990 None:intergenic 25.0%
!! TGTTACATTTTGTGTTTGAA+TGG - chr7_3:56385153-56385172 None:intergenic 25.0%
! TACCAATGAAATACTCTTAA+TGG - chr7_3:56385309-56385328 None:intergenic 25.0%
!!! GATCTAATGTTTTTGATTGT+TGG - chr7_3:56385693-56385712 None:intergenic 25.0%
!!! CACTTCACTTTTATTTTTGT+TGG - chr7_3:56385763-56385782 None:intergenic 25.0%
! TTAGAAAAAGTTAATGTACC+CGG + chr7_3:56386115-56386134 Msa1110920:intron 25.0%
!! TGTTTTATCTCTATTTTCTC+CGG - chr7_3:56386137-56386156 None:intergenic 25.0%
!!! AGTAGTTCAAGTGTTTTTTT+GGG - chr7_3:56386165-56386184 None:intergenic 25.0%
!!! AAGTAGTTCAAGTGTTTTTT+TGG - chr7_3:56386166-56386185 None:intergenic 25.0%
!!! TTTGTTGTTATTGTTGCTTA+AGG - chr7_3:56386535-56386554 None:intergenic 25.0%
! CAAATATTGTTTATCCAGTT+CGG + chr7_3:56386635-56386654 Msa1110920:intron 25.0%
!! TTCATTTAGTGTTTTCTCTA+AGG - chr7_3:56386781-56386800 None:intergenic 25.0%
! GAAATATTTGTAAACACCTT+GGG - chr7_3:56386836-56386855 None:intergenic 25.0%
! AGAAATATTTGTAAACACCT+TGG - chr7_3:56386837-56386856 None:intergenic 25.0%
! AGATAAAGTTAGTACTGTAT+TGG - chr7_3:56387038-56387057 None:intergenic 25.0%
!!! TTGAAGTTCTAGAAAAAATG+TGG - chr7_3:56387140-56387159 None:intergenic 25.0%
! ATCCAAAAAATTTGAAGACA+GGG - chr7_3:56387203-56387222 None:intergenic 25.0%
! CAAAACAACCTAAGAATATA+GGG - chr7_3:56387252-56387271 None:intergenic 25.0%
! ACAAAACAACCTAAGAATAT+AGG - chr7_3:56387253-56387272 None:intergenic 25.0%
!! TTATATCTTCCTTTTGGATT+AGG - chr7_3:56388126-56388145 None:intergenic 25.0%
! ATTAATATGTAGAACTCACT+TGG - chr7_3:56388229-56388248 None:intergenic 25.0%
!! TCAATGTATTTTCATCTTCT+AGG + chr7_3:56388297-56388316 Msa1110920:intron 25.0%
!! CAATGTATTTTCATCTTCTA+GGG + chr7_3:56388298-56388317 Msa1110920:intron 25.0%
GAAGAAATTCAGAATGACAT+CGG + chr7_3:56384034-56384053 Msa1110920:five_prime_UTR 30.0%
! GATTGTTGAGTTTTCTGAAT+TGG + chr7_3:56384241-56384260 Msa1110920:intron 30.0%
TTACACTTGATTTATTCAGC+TGG + chr7_3:56384366-56384385 Msa1110920:intron 30.0%
TACACTTGATTTATTCAGCT+GGG + chr7_3:56384367-56384386 Msa1110920:intron 30.0%
AATTGAATAGATGACAGGAA+AGG + chr7_3:56384394-56384413 Msa1110920:intron 30.0%
AACAGAAAATCAAACATTCC+AGG - chr7_3:56384436-56384455 None:intergenic 30.0%
TTAAGAAAACAGAAACTGGA+AGG - chr7_3:56384662-56384681 None:intergenic 30.0%
!! AGGTTCATTCTAAAGCATTT+AGG + chr7_3:56384687-56384706 Msa1110920:intron 30.0%
!! TCATTCTAAAGCATTTAGGA+TGG + chr7_3:56384691-56384710 Msa1110920:intron 30.0%
!! CATTCTAAAGCATTTAGGAT+GGG + chr7_3:56384692-56384711 Msa1110920:intron 30.0%
GATATGGATTTGGATGTAAA+TGG - chr7_3:56384993-56385012 None:intergenic 30.0%
!!! GAGCACCATTGAATTTTTTT+TGG + chr7_3:56385070-56385089 Msa1110920:intron 30.0%
AACACAAAATGTAACACCTT+AGG + chr7_3:56385157-56385176 Msa1110920:intron 30.0%
ATACTCTTAATGGTGTGATA+CGG - chr7_3:56385299-56385318 None:intergenic 30.0%
!! CACCATTAAGAGTATTTCAT+TGG + chr7_3:56385304-56385323 Msa1110920:intron 30.0%
!!! AAGTCTTGATTTGGAGTTTT+AGG - chr7_3:56385339-56385358 None:intergenic 30.0%
CATCTGATTCTAAATGACAT+TGG - chr7_3:56385387-56385406 None:intergenic 30.0%
AATCAGATGATGTGACTTTA+TGG + chr7_3:56385398-56385417 Msa1110920:intron 30.0%
TTAATTTAGGAACGTGCAAT+CGG + chr7_3:56385518-56385537 Msa1110920:intron 30.0%
! TCAATCAGTTTGTATTTCTG+TGG - chr7_3:56385559-56385578 None:intergenic 30.0%
GACAAAACAACAAATTGATG+TGG + chr7_3:56385593-56385612 Msa1110920:intron 30.0%
! AACTTGCTTAGTGTATGTAT+AGG + chr7_3:56385624-56385643 Msa1110920:intron 30.0%
AAATTAAACCAAGCTATCAG+TGG - chr7_3:56385670-56385689 None:intergenic 30.0%
!! TATATTTTGGAAGAAGAGTG+AGG + chr7_3:56385789-56385808 Msa1110920:five_prime_UTR 30.0%
! GTTTTATCTCTATTTTCTCC+GGG - chr7_3:56386136-56386155 None:intergenic 30.0%
! CTAATCATAACTTTTCGTTG+TGG + chr7_3:56386336-56386355 Msa1110920:intron 30.0%
CATCAATAAAACTGTATGTG+TGG + chr7_3:56386474-56386493 Msa1110920:intron 30.0%
TGTATCACTCTTTATCATAG+TGG - chr7_3:56386701-56386720 None:intergenic 30.0%
!!! TTTGGTGAGAGTTTTTTCTT+GGG - chr7_3:56386863-56386882 None:intergenic 30.0%
!!! ACGATTTTGATTCTTTTCCT+CGG - chr7_3:56387116-56387135 None:intergenic 30.0%
! GTTGAAATTTGGCTCAAAAT+TGG - chr7_3:56387166-56387185 None:intergenic 30.0%
TCCAAAAAATTTGAAGACAG+GGG - chr7_3:56387202-56387221 None:intergenic 30.0%
GATCCAAAAAATTTGAAGAC+AGG - chr7_3:56387204-56387223 None:intergenic 30.0%
ATTCTCATCCCTATATTCTT+AGG + chr7_3:56387241-56387260 Msa1110920:intron 30.0%
CTTACATATCTATCGTTACA+TGG - chr7_3:56387345-56387364 None:intergenic 30.0%
AGCGAAATTATACAAATTGC+AGG + chr7_3:56387363-56387382 Msa1110920:intron 30.0%
GCGAAATTATACAAATTGCA+GGG + chr7_3:56387364-56387383 Msa1110920:intron 30.0%
TCTTTCAGTTCAAAATCAAC+TGG - chr7_3:56387528-56387547 None:intergenic 30.0%
! CTTTTTATCACAATTTCCTC+TGG - chr7_3:56387552-56387571 None:intergenic 30.0%
GTGATAAAAAGAACCATTGA+TGG + chr7_3:56387561-56387580 Msa1110920:CDS 30.0%
TATGCAAAACAAAGAAGAAG+AGG + chr7_3:56387665-56387684 Msa1110920:CDS 30.0%
AAACAAAGAAGAAGAGGTAA+TGG + chr7_3:56387671-56387690 Msa1110920:CDS 30.0%
!! AGGTAATGGATGAAAGTTAT+TGG + chr7_3:56387685-56387704 Msa1110920:CDS 30.0%
!! CTAATACCAACTTTTGTTGT+TGG + chr7_3:56387828-56387847 Msa1110920:CDS 30.0%
ATAAGAAAGCTAGTGAACTA+TGG - chr7_3:56387887-56387906 None:intergenic 30.0%
!! AGTTCACTAGCTTTCTTATT+TGG + chr7_3:56387888-56387907 Msa1110920:CDS 30.0%
ACAATAATCCAAGAACCAAT+GGG - chr7_3:56387941-56387960 None:intergenic 30.0%
! GAGCAATTATATCTTCCTTT+TGG - chr7_3:56388132-56388151 None:intergenic 30.0%
TCTTCAATAGTTGCAATGAA+TGG - chr7_3:56388156-56388175 None:intergenic 30.0%
AGAAAGCTCACACAAATTAA+TGG - chr7_3:56388257-56388276 None:intergenic 30.0%
!! AGTTTCTTTGAGGTTAAATG+TGG - chr7_3:56388353-56388372 None:intergenic 30.0%
AATTGAATGTTGCAAGGAAA+AGG + chr7_3:56388427-56388446 Msa1110920:CDS 30.0%
ATTGAATGTTGCAAGGAAAA+GGG + chr7_3:56388428-56388447 Msa1110920:CDS 30.0%
TAGATGAAATAAAAACCACC+CGG + chr7_3:56388552-56388571 Msa1110920:three_prime_UTR 30.0%
ATTTCTTCGAAGAGGAGTTT+GGG - chr7_3:56384022-56384041 None:intergenic 35.0%
AATTTCTTCGAAGAGGAGTT+TGG - chr7_3:56384023-56384042 None:intergenic 35.0%
CATTCTGAATTTCTTCGAAG+AGG - chr7_3:56384030-56384049 None:intergenic 35.0%
AATCACACCATGAATCTGTA+GGG + chr7_3:56384073-56384092 Msa1110920:five_prime_UTR 35.0%
GGTGTTTGATTGTTTAAACC+TGG + chr7_3:56384415-56384434 Msa1110920:intron 35.0%
! GTGTCTACAAAAGCATACAT+GGG - chr7_3:56384486-56384505 None:intergenic 35.0%
! AGTGTCTACAAAAGCATACA+TGG - chr7_3:56384487-56384506 None:intergenic 35.0%
CATTACTCTTCTGATAGATC+AGG + chr7_3:56384567-56384586 Msa1110920:five_prime_UTR 35.0%
!! CTTAAAATGGATGGATTGGA+TGG + chr7_3:56384884-56384903 Msa1110920:intron 35.0%
TGGATTTGGATGTAAATGGA+TGG - chr7_3:56384989-56385008 None:intergenic 35.0%
! AATCAAATGGATGGTTTGGA+TGG - chr7_3:56385015-56385034 None:intergenic 35.0%
AGAGAGTAGAAGTCTTGATT+TGG - chr7_3:56385348-56385367 None:intergenic 35.0%
! AAATACCATTTTCCACCTAG+AGG + chr7_3:56385451-56385470 Msa1110920:intron 35.0%
ATACACTAAGCAAGTTGCTT+AGG - chr7_3:56385620-56385639 None:intergenic 35.0%
! TGGTTCTGTATGAATGTTGA+TGG - chr7_3:56385743-56385762 None:intergenic 35.0%
!! GTAAACTGGTAATGGAAGAA+GGG + chr7_3:56385811-56385830 Msa1110920:exon 35.0%
TAACAGCATAACCATCTTCA+AGG - chr7_3:56385899-56385918 None:intergenic 35.0%
!! TCTTTCAAAAAGGTGTTACC+TGG - chr7_3:56385942-56385961 None:intergenic 35.0%
ATTTCGACACGATGATGATT+AGG + chr7_3:56386384-56386403 Msa1110920:intron 35.0%
TTTCGACACGATGATGATTA+GGG + chr7_3:56386385-56386404 Msa1110920:intron 35.0%
AAACTGTATGTGTGGAACAA+AGG + chr7_3:56386482-56386501 Msa1110920:intron 35.0%
GTCCAATAAGACATACTCTA+GGG + chr7_3:56386657-56386676 Msa1110920:intron 35.0%
!! CACTCTTTATCATAGTGGAT+CGG - chr7_3:56386696-56386715 None:intergenic 35.0%
TAAGGATTCATTGTGAGTGT+GGG - chr7_3:56386763-56386782 None:intergenic 35.0%
!!! CTTTGGTGAGAGTTTTTTCT+TGG - chr7_3:56386864-56386883 None:intergenic 35.0%
TCAAGAGATAGGAAAACCAA+AGG - chr7_3:56386909-56386928 None:intergenic 35.0%
ACGATTTCTCAGGATATTCT+GGG - chr7_3:56386972-56386991 None:intergenic 35.0%
AACGATTTCTCAGGATATTC+TGG - chr7_3:56386973-56386992 None:intergenic 35.0%
!!! AAATTTTTTGGATCCGTTCC+TGG + chr7_3:56387210-56387229 Msa1110920:intron 35.0%
!!! TTTAGCTTTTGGGTTGCATT+TGG - chr7_3:56387423-56387442 None:intergenic 35.0%
TTGCTGCATTGAAACTTTCT+GGG - chr7_3:56387470-56387489 None:intergenic 35.0%
ATTGCTGCATTGAAACTTTC+TGG - chr7_3:56387471-56387490 None:intergenic 35.0%
AGTTTCAATGCAGCAATTGA+AGG + chr7_3:56387474-56387493 Msa1110920:CDS 35.0%
GTTTCAATGCAGCAATTGAA+GGG + chr7_3:56387475-56387494 Msa1110920:CDS 35.0%
! TTTTGAACTGAAAGAACCAG+AGG + chr7_3:56387533-56387552 Msa1110920:CDS 35.0%
AATTCCTAATGCTCCATCAA+TGG - chr7_3:56387577-56387596 None:intergenic 35.0%
!! GAAATTTGAAGCCTTTTGCT+TGG + chr7_3:56387727-56387746 Msa1110920:CDS 35.0%
!! GAGAAAGCTGTTCTAGAATT+TGG + chr7_3:56387777-56387796 Msa1110920:CDS 35.0%
CTAGAATTTGGAGAACAACA+TGG + chr7_3:56387789-56387808 Msa1110920:CDS 35.0%
ATTTGGAGAACAACATGGTT+TGG + chr7_3:56387794-56387813 Msa1110920:CDS 35.0%
AAAGGTCCAACAACAAAAGT+TGG - chr7_3:56387837-56387856 None:intergenic 35.0%
CACAATAATCCAAGAACCAA+TGG - chr7_3:56387942-56387961 None:intergenic 35.0%
AACAAATGGAATTTGCATGC+AGG + chr7_3:56388006-56388025 Msa1110920:intron 35.0%
CTTGAACATCCTAATCCAAA+AGG + chr7_3:56388114-56388133 Msa1110920:CDS 35.0%
! CATTTGAAGTTCAGGATACT+TGG - chr7_3:56388199-56388218 None:intergenic 35.0%
GAGGTTAAATGTGGAAACTT+AGG - chr7_3:56388344-56388363 None:intergenic 35.0%
TTTAACCTCAAAGAAACTCG+TGG + chr7_3:56388355-56388374 Msa1110920:CDS 35.0%
AAATCATATGTCGCTAGACA+TGG + chr7_3:56388496-56388515 Msa1110920:three_prime_UTR 35.0%
!! CGTTTGTTATTTCAACGGAA+CGG - chr7_3:56388584-56388603 None:intergenic 35.0%
TTTCTTCGAAGAGGAGTTTG+GGG - chr7_3:56384021-56384040 None:intergenic 40.0%
GAATCACACCATGAATCTGT+AGG + chr7_3:56384072-56384091 Msa1110920:five_prime_UTR 40.0%
AGAGAATCCCTACAGATTCA+TGG - chr7_3:56384083-56384102 None:intergenic 40.0%
ATGACTGACGAGTGAACAAT+CGG - chr7_3:56384115-56384134 None:intergenic 40.0%
GTAGACACTAGATATTGTCG+CGG + chr7_3:56384498-56384517 Msa1110920:intron 40.0%
GCGACAACTCTAAACTTATC+TGG - chr7_3:56384529-56384548 None:intergenic 40.0%
GGTTTGGATGGATATGGATT+TGG - chr7_3:56385003-56385022 None:intergenic 40.0%
! ATGGATGGTTTGGATGGATA+TGG - chr7_3:56385009-56385028 None:intergenic 40.0%
CACGAATCAAATGGATGGTT+TGG - chr7_3:56385019-56385038 None:intergenic 40.0%
TGCATCACGAATCAAATGGA+TGG - chr7_3:56385024-56385043 None:intergenic 40.0%
CGAATGCATCACGAATCAAA+TGG - chr7_3:56385028-56385047 None:intergenic 40.0%
! AGCTATCGTGAAGTTTTCGT+TGG + chr7_3:56385107-56385126 Msa1110920:intron 40.0%
CAGATGATGTGACTTTATGG+CGG + chr7_3:56385401-56385420 Msa1110920:intron 40.0%
GATTCATTACTTGCTCCTCT+AGG - chr7_3:56385469-56385488 None:intergenic 40.0%
TAATTGGAGGTGGTGTGATA+TGG - chr7_3:56385493-56385512 None:intergenic 40.0%
TTAAACCAAGCTATCAGTGG+AGG - chr7_3:56385667-56385686 None:intergenic 40.0%
AGAGTGAGGTAAACTGGTAA+TGG + chr7_3:56385803-56385822 Msa1110920:exon 40.0%
!! GGTAAACTGGTAATGGAAGA+AGG + chr7_3:56385810-56385829 Msa1110920:exon 40.0%
AAAGGAAGAGTTTGTGTGAC+TGG + chr7_3:56385834-56385853 Msa1110920:CDS 40.0%
!! GTACAGGGTTTATTGGTTCA+TGG + chr7_3:56385859-56385878 Msa1110920:CDS 40.0%
ATCAAGAGACTCCTTGAAGA+TGG + chr7_3:56385885-56385904 Msa1110920:CDS 40.0%
ACCACTGTTAGATCAAATCC+AGG + chr7_3:56385921-56385940 Msa1110920:CDS 40.0%
ACCTGGATTTGATCTAACAG+TGG - chr7_3:56385925-56385944 None:intergenic 40.0%
! TATGTCTTATTGGACCGAAC+TGG - chr7_3:56386652-56386671 None:intergenic 40.0%
GGTCCAATAAGACATACTCT+AGG + chr7_3:56386656-56386675 Msa1110920:intron 40.0%
CTCCCTAGAGTATGTCTTAT+TGG - chr7_3:56386662-56386681 None:intergenic 40.0%
CTAAGGATTCATTGTGAGTG+TGG - chr7_3:56386764-56386783 None:intergenic 40.0%
!! ACTTTAGGACTAGGTGTCTT+TGG - chr7_3:56386881-56386900 None:intergenic 40.0%
AAACCAAAGGAGGGAACTTT+AGG - chr7_3:56386896-56386915 None:intergenic 40.0%
GAGATAGGAAAACCAAAGGA+GGG - chr7_3:56386905-56386924 None:intergenic 40.0%
AGAGATAGGAAAACCAAAGG+AGG - chr7_3:56386906-56386925 None:intergenic 40.0%
TTTAGGGAGCTTCAAGAGAT+AGG - chr7_3:56386920-56386939 None:intergenic 40.0%
GACACCTATGCATGAAATTG+TGG - chr7_3:56387071-56387090 None:intergenic 40.0%
ATTTCCAATAGCAAACTCCG+AGG + chr7_3:56387096-56387115 Msa1110920:intron 40.0%
!!! TTTTCCTCGGAGTTTGCTAT+TGG - chr7_3:56387103-56387122 None:intergenic 40.0%
!!! GCCCCTGTCTTCAAATTTTT+TGG + chr7_3:56387198-56387217 Msa1110920:intron 40.0%
AGAATGTGTTTGACCAGGAA+CGG - chr7_3:56387226-56387245 None:intergenic 40.0%
TTGCATTTGGAAGATCTGTG+AGG - chr7_3:56387410-56387429 None:intergenic 40.0%
! AGAACCATTGATGGAGCATT+AGG + chr7_3:56387570-56387589 Msa1110920:CDS 40.0%
ACAGCATATGACCAAGCAAA+AGG - chr7_3:56387741-56387760 None:intergenic 40.0%
GGTAGCTTAGGACAAATGAA+AGG - chr7_3:56387855-56387874 None:intergenic 40.0%
TTCATTTGTCCTAAGCTACC+TGG + chr7_3:56387855-56387874 Msa1110920:CDS 40.0%
CTTCTTACCATGTTTCCCAT+TGG + chr7_3:56387923-56387942 Msa1110920:intron 40.0%
GTACGAGATACAAGCACTAA+TGG - chr7_3:56388048-56388067 None:intergenic 40.0%
TTAGTGCTTGTATCTCGTAC+CGG + chr7_3:56388048-56388067 Msa1110920:CDS 40.0%
ATCATCAACATGCACCATAC+CGG - chr7_3:56388070-56388089 None:intergenic 40.0%
!! TATGGTGCATGTTGATGATG+TGG + chr7_3:56388071-56388090 Msa1110920:CDS 40.0%
CAGGATACTTGGAAGAAACA+AGG - chr7_3:56388188-56388207 None:intergenic 40.0%
! GATGTTGGCATTTGAAGTTC+AGG - chr7_3:56388207-56388226 None:intergenic 40.0%
TGTAGAACTCACTTGGATGT+TGG - chr7_3:56388222-56388241 None:intergenic 40.0%
! TTCATCTTCTAGGGAGCTTA+TGG + chr7_3:56388307-56388326 Msa1110920:intron 40.0%
! TCATCTTCTAGGGAGCTTAT+GGG + chr7_3:56388308-56388327 Msa1110920:intron 40.0%
ATCATCCACGAGTTTCTTTG+AGG - chr7_3:56388363-56388382 None:intergenic 40.0%
TCAAAGAAACTCGTGGATGA+TGG + chr7_3:56388362-56388381 Msa1110920:CDS 40.0%
! TAGCCTTGAGGAAATGTTTG+AGG + chr7_3:56388400-56388419 Msa1110920:CDS 40.0%
!! AGTGGATTGTAAAGGGACCA+TGG + chr7_3:56384951-56384970 Msa1110920:intron 45.0%
GTAACACCTTAGGCTTAGCT+AGG + chr7_3:56385167-56385186 Msa1110920:intron 45.0%
ACCTTAGGCTTAGCTAGGTA+TGG + chr7_3:56385172-56385191 Msa1110920:intron 45.0%
TCCATACCTAGCTAAGCCTA+AGG - chr7_3:56385176-56385195 None:intergenic 45.0%
TTGCTCCTCTAGGTGGAAAA+TGG - chr7_3:56385459-56385478 None:intergenic 45.0%
TCATTACTTGCTCCTCTAGG+TGG - chr7_3:56385466-56385485 None:intergenic 45.0%
GCAATCGGCAAGGAGAAATA+TGG + chr7_3:56385533-56385552 Msa1110920:intron 45.0%
CAATTCCTCCACTGATAGCT+TGG + chr7_3:56385659-56385678 Msa1110920:five_prime_UTR 45.0%
GGAAGAAGAGTGAGGTAAAC+TGG + chr7_3:56385797-56385816 Msa1110920:five_prime_UTR 45.0%
!! CTGGTAATGGAAGAAGGGAA+AGG + chr7_3:56385816-56385835 Msa1110920:exon 45.0%
! TTTGTGTGACTGGAGGTACA+GGG + chr7_3:56385844-56385863 Msa1110920:CDS 45.0%
! ACTGGAGGTACAGGGTTTAT+TGG + chr7_3:56385852-56385871 Msa1110920:CDS 45.0%
TTGGGTAGTGAGATCTCAAG+AGG - chr7_3:56386818-56386837 None:intergenic 45.0%
TCTTGAGATCTCACTACCCA+AGG + chr7_3:56386817-56386836 Msa1110920:intron 45.0%
!! AAGGAGGGAACTTTAGGACT+AGG - chr7_3:56386890-56386909 None:intergenic 45.0%
AGTCCTAAAGTTCCCTCCTT+TGG + chr7_3:56386890-56386909 Msa1110920:intron 45.0%
CAATCGTGGAACGATTTCTC+AGG - chr7_3:56386982-56387001 None:intergenic 45.0%
CTGAGAAATCGTTCCACGAT+TGG + chr7_3:56386980-56386999 Msa1110920:intron 45.0%
ACAACAAATCGTGGCACGAT+GGG - chr7_3:56387008-56387027 None:intergenic 45.0%
AACAACAAATCGTGGCACGA+TGG - chr7_3:56387009-56387028 None:intergenic 45.0%
!! ATCGTGCCACGATTTGTTGT+TGG + chr7_3:56387008-56387027 Msa1110920:intron 45.0%
GGTGTACCAACAACAAATCG+TGG - chr7_3:56387017-56387036 None:intergenic 45.0%
CGTGCCACAATTTCATGCAT+AGG + chr7_3:56387064-56387083 Msa1110920:intron 45.0%
GGATGAGAATGTGTTTGACC+AGG - chr7_3:56387231-56387250 None:intergenic 45.0%
AATCAACTGGAGTAGCTGTG+TGG - chr7_3:56387515-56387534 None:intergenic 45.0%
AGTGAACTATGGACAGATCC+AGG - chr7_3:56387876-56387895 None:intergenic 45.0%
CCAAGAACCAATGGGAAACA+TGG - chr7_3:56387933-56387952 None:intergenic 45.0%
!! CCATGTTTCCCATTGGTTCT+TGG + chr7_3:56387930-56387949 Msa1110920:intron 45.0%
AGGGAGCTTATGGGAGTTAA+AGG + chr7_3:56388317-56388336 Msa1110920:intron 45.0%
! CGAGTTCAAGTATAGCCTTG+AGG + chr7_3:56388388-56388407 Msa1110920:CDS 45.0%
CGTCCTCAAACATTTCCTCA+AGG - chr7_3:56388406-56388425 None:intergenic 45.0%
GGACGCAATTGAATGTTGCA+AGG + chr7_3:56388421-56388440 Msa1110920:CDS 45.0%
!!! ATAAAAAAAAATATTCATTT+TGG + chr7_3:56384799-56384818 Msa1110920:intron 5.0%
!! ATGAAATTAAAAAAAATATA+TGG + chr7_3:56384833-56384852 Msa1110920:intron 5.0%
ACTGACGAGTGAACAATCGG+TGG - chr7_3:56384112-56384131 None:intergenic 50.0%
TTAGGAACGTGCAATCGGCA+AGG + chr7_3:56385523-56385542 Msa1110920:intron 50.0%
GGAAGAGTTTGTGTGACTGG+AGG + chr7_3:56385837-56385856 Msa1110920:CDS 50.0%
! GTTTGTGTGACTGGAGGTAC+AGG + chr7_3:56385843-56385862 Msa1110920:CDS 50.0%
! GCAGCAATTGAAGGGTGCAT+TGG + chr7_3:56387483-56387502 Msa1110920:CDS 50.0%
!! ACACACAGCAGAAGCACTTG+AGG - chr7_3:56387646-56387665 None:intergenic 50.0%
TGGACAGATCCAGGTAGCTT+AGG - chr7_3:56387867-56387886 None:intergenic 50.0%
! GCTTGTATCTCGTACCGGTA+TGG + chr7_3:56388053-56388072 Msa1110920:CDS 50.0%
!! TTCAACGGAACGGATTGCAC+CGG - chr7_3:56388574-56388593 None:intergenic 50.0%
!! TCAACGGAACGGATTGCACC+GGG - chr7_3:56388573-56388592 None:intergenic 55.0%
AGAGTTGTCGCACTCGCAGC+TGG + chr7_3:56384538-56384557 Msa1110920:five_prime_UTR 60.0%
GGCACGATGGGTGCCAATCG+TGG - chr7_3:56386996-56387015 None:intergenic 65.0%
!! ACGGAACGGATTGCACCGGG+TGG - chr7_3:56388570-56388589 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 56384003 56388622 56384003 ID=Msa1110920;Name=Msa1110920
chr7_3 mRNA 56384003 56388622 56384003 ID=Msa1110920-mRNA-1;Parent=Msa1110920;Name=Msa1110920-mRNA-1;_AED=0.23;_eAED=0.23;_QI=425|1|1|1|0.8|0.83|6|162|329
chr7_3 exon 56384003 56384164 56384003 ID=Msa1110920-mRNA-1:exon:11881;Parent=Msa1110920-mRNA-1
chr7_3 exon 56384502 56384588 56384502 ID=Msa1110920-mRNA-1:exon:11882;Parent=Msa1110920-mRNA-1
chr7_3 exon 56385646 56385942 56385646 ID=Msa1110920-mRNA-1:exon:11883;Parent=Msa1110920-mRNA-1
chr7_3 exon 56387385 56387909 56387385 ID=Msa1110920-mRNA-1:exon:11884;Parent=Msa1110920-mRNA-1
chr7_3 exon 56388028 56388229 56388028 ID=Msa1110920-mRNA-1:exon:11885;Parent=Msa1110920-mRNA-1
chr7_3 exon 56388319 56388622 56388319 ID=Msa1110920-mRNA-1:exon:11886;Parent=Msa1110920-mRNA-1
chr7_3 five_prime_UTR 56384003 56384164 56384003 ID=Msa1110920-mRNA-1:five_prime_utr;Parent=Msa1110920-mRNA-1
chr7_3 five_prime_UTR 56384502 56384588 56384502 ID=Msa1110920-mRNA-1:five_prime_utr;Parent=Msa1110920-mRNA-1
chr7_3 five_prime_UTR 56385646 56385821 56385646 ID=Msa1110920-mRNA-1:five_prime_utr;Parent=Msa1110920-mRNA-1
chr7_3 CDS 56385822 56385942 56385822 ID=Msa1110920-mRNA-1:cds;Parent=Msa1110920-mRNA-1
chr7_3 CDS 56387385 56387909 56387385 ID=Msa1110920-mRNA-1:cds;Parent=Msa1110920-mRNA-1
chr7_3 CDS 56388028 56388229 56388028 ID=Msa1110920-mRNA-1:cds;Parent=Msa1110920-mRNA-1
chr7_3 CDS 56388319 56388460 56388319 ID=Msa1110920-mRNA-1:cds;Parent=Msa1110920-mRNA-1
chr7_3 three_prime_UTR 56388461 56388622 56388461 ID=Msa1110920-mRNA-1:three_prime_utr;Parent=Msa1110920-mRNA-1
Gene Sequence

>Msa1110920

ATGGAAGAAGGGAAAGGAAGAGTTTGTGTGACTGGAGGTACAGGGTTTATTGGTTCATGGATTATCAAGAGACTCCTTGAAGATGGTTATGCTGTTAATACCACTGTTAGATCAAATCCAGGGCAAAAGAAAGATGTTAGCTTCCTCACAGATCTTCCAAATGCAACCCAAAAGCTAAATATTTTCAATGCTGATCTTAGCAACCCAGAAAGTTTCAATGCAGCAATTGAAGGGTGCATTGGAGTATTCCACACAGCTACTCCAGTTGATTTTGAACTGAAAGAACCAGAGGAAATTGTGATAAAAAGAACCATTGATGGAGCATTAGGAATTCTAAAAGCATGCAAAAATTCAAAGACAGTGAAAAGAGTTATTTACACCTCAAGTGCTTCTGCTGTGTGTATGCAAAACAAAGAAGAAGAGGTAATGGATGAAAGTTATTGGAGTGATGTGAATATTCTTAGAAATTTGAAGCCTTTTGCTTGGTCATATGCTGTTTCTAAGACACTAGCTGAGAAAGCTGTTCTAGAATTTGGAGAACAACATGGTTTGGATATCGTGACTCTAATACCAACTTTTGTTGTTGGACCTTTCATTTGTCCTAAGCTACCTGGATCTGTCCATAGTTCACTAGCTTTCTTATTTGGTGATATTGACAAGAATCCATTAGTGCTTGTATCTCGTACCGGTATGGTGCATGTTGATGATGTGGCTAGAGCACATATATTCTTACTTGAACATCCTAATCCAAAAGGAAGATATAATTGCTCACCATTCATTGCAACTATTGAAGAAATAGTTGACCTTGTTTCTTCCAAGTATCCTGAACTTCAAATGCCAACATCCAAGGAGCTTATGGGAGTTAAAGGTCCTAAGTTTCCACATTTAACCTCAAAGAAACTCGTGGATGATGGATTCGAGTTCAAGTATAGCCTTGAGGAAATGTTTGAGGACGCAATTGAATGTTGCAAGGAAAAGGGTTATCTTTGA

Protein sequence

>Msa1110920

MEEGKGRVCVTGGTGFIGSWIIKRLLEDGYAVNTTVRSNPGQKKDVSFLTDLPNATQKLNIFNADLSNPESFNAAIEGCIGVFHTATPVDFELKEPEEIVIKRTIDGALGILKACKNSKTVKRVIYTSSASAVCMQNKEEEVMDESYWSDVNILRNLKPFAWSYAVSKTLAEKAVLEFGEQHGLDIVTLIPTFVVGPFICPKLPGSVHSSLAFLFGDIDKNPLVLVSRTGMVHVDDVARAHIFLLEHPNPKGRYNCSPFIATIEEIVDLVSSKYPELQMPTSKELMGVKGPKFPHLTSKKLVDDGFEFKYSLEEMFEDAIECCKEKGYL*