AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0607440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607440 MtrunA17_Chr4g0039031 85.512 566 25 3 1 509 1 566 0.0 964
Msa0607440 MtrunA17_Chr7g0217861 92.308 117 9 0 376 492 1 117 3.98e-73 228
Msa0607440 MtrunA17_Chr1g0199851 25.379 264 188 8 232 490 407 666 1.01e-12 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607440 AT1G74710.1 47.280 533 196 8 46 500 35 560 2.29e-158 462
Msa0607440 AT1G74710.2 46.893 531 197 7 46 498 35 558 1.79e-155 457
Msa0607440 AT1G18870.2 60.481 291 115 0 208 498 213 503 9.90e-125 374
Msa0607440 AT1G18870.2 46.988 166 65 5 59 209 1 158 4.34e-34 135
Msa0607440 AT1G18870.1 60.481 291 115 0 208 498 263 553 1.95e-124 375
Msa0607440 AT1G18870.1 47.647 170 66 5 55 209 47 208 6.65e-36 141
Msa0607440 AT1G18870.3 54.983 291 107 1 208 498 263 529 5.65e-105 324
Msa0607440 AT1G18870.3 47.647 170 66 5 55 209 47 208 5.07e-36 141
Msa0607440 AT2G29690.1 26.908 249 149 4 271 499 365 600 4.09e-13 72.4

Find 157 sgRNAs with CRISPR-Local

Find 554 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCAATAAAATTGCAATTA+TGG 0.163087 4_2:-54247131 Msa0607440:three_prime_UTR
AAGAATACAAACTAATTAAA+TGG 0.175379 4_2:-54255695 Msa0607440:five_prime_UTR
GTGAGCTCTATCAACTTATA+AGG 0.258411 4_2:-54247733 Msa0607440:intron
AGCAACTATTTCACAGAAAA+TGG 0.276767 4_2:-54251929 Msa0607440:CDS
AGAAAGCATACGAAGAAAAT+TGG 0.278150 4_2:-54251677 Msa0607440:CDS
GGAAACTTGGTTAGCATTGC+TGG 0.279230 4_2:-54254313 Msa0607440:CDS
CGCGTTTCTATCGTCCTAAC+TGG 0.284030 4_2:+54254556 None:intergenic
CATTTATTTGCTCAATTAAC+TGG 0.288208 4_2:-54250907 Msa0607440:CDS
CCGATAAATGCCGGTGCATT+AGG 0.301055 4_2:+54252560 None:intergenic
GCTGGACCTGTTGGTTGGTT+TGG 0.311172 4_2:-54250409 Msa0607440:CDS
TTATGGAGAGGGAGGAGATT+TGG 0.314731 4_2:-54247114 Msa0607440:three_prime_UTR
AGACAAGCTAACCACGTTAG+AGG 0.324370 4_2:+54252732 None:intergenic
CTTCTTTACTAGGAATGTTA+TGG 0.328879 4_2:+54252971 None:intergenic
CACCCAAGTCCTGCAGTTTG+TGG 0.329480 4_2:-54250744 Msa0607440:CDS
TTTGTATTCTTCATTTCATT+AGG 0.334473 4_2:+54255707 None:intergenic
ATCCAATCCCAATAGGAAAA+TGG 0.334738 4_2:+54254256 None:intergenic
GTTCACCAAGTTGCTTAAAC+TGG 0.336083 4_2:-54247776 Msa0607440:CDS
GCTTCAACTTGCTCCTCAAT+AGG 0.339305 4_2:+54254415 None:intergenic
AGTCAAATGAACACACAATT+TGG 0.341485 4_2:+54247090 None:intergenic
AGCTCATCCCACTCTAAGTA+TGG 0.346266 4_2:+54248071 None:intergenic
AACATGAGGGAGATGGAAAA+TGG 0.350219 4_2:+54255558 None:intergenic
CCAAAGCTTCACTAGTGATA+TGG 0.351321 4_2:+54251904 None:intergenic
GGCTATGTACAGTCTCAAAA+TGG 0.363690 4_2:-54254503 Msa0607440:CDS
CATTACTTTAAGAACAACTT+TGG 0.366850 4_2:+54246942 None:intergenic
ATATAATACAACATGTACTA+TGG 0.367333 4_2:+54247055 None:intergenic
CCTAATGCACCGGCATTTAT+CGG 0.372337 4_2:-54252560 Msa0607440:CDS
AGGTAGCATCCCTTACAAAT+AGG 0.375008 4_2:+54254628 None:intergenic
CTGTTGTTGTCGTTGTCTCT+TGG 0.375042 4_2:+54255433 None:intergenic
AGATTCCAATCTTCTTTACT+AGG 0.376208 4_2:+54252961 None:intergenic
GCAATGCTAACCAAGTTTCC+AGG 0.385429 4_2:+54254316 None:intergenic
GCAAATAAATGTTGGATCCT+TGG 0.388958 4_2:+54250919 None:intergenic
GGACCTGTTGGTTGGTTTGG+AGG 0.393014 4_2:-54250406 Msa0607440:CDS
ACCCAAGTCCTGCAGTTTGT+GGG 0.399188 4_2:-54250743 Msa0607440:CDS
ATTGGGATTGGATATCTATA+AGG 0.399903 4_2:-54254246 Msa0607440:CDS
GTTGTTGTTTCAAAGTGATA+TGG 0.401605 4_2:+54255662 None:intergenic
ATGCCAGATGAGGTACAAAA+TGG 0.404784 4_2:+54254454 None:intergenic
TGGTCCTCTAGCACGGGTTC+CGG 0.410896 4_2:+54251881 None:intergenic
GTGAGTTTGCCGTTGGCATC+AGG 0.415994 4_2:-54250375 Msa0607440:CDS
TTTCTTTGCTTTAGATATTG+TGG 0.418001 4_2:-54247236 Msa0607440:intron
GAAATCTTGCCCTGGAAACT+TGG 0.418146 4_2:-54254326 Msa0607440:CDS
CAGGTCAGCATTGGTGGAAC+AGG 0.418978 4_2:-54250356 Msa0607440:intron
TGCCCTTTGATTCGCGCATA+TGG 0.422545 4_2:-54253934 Msa0607440:CDS
AGCAAGTTGAAGCAATTGAT+TGG 0.422787 4_2:-54254405 Msa0607440:CDS
CTTCCTAGATGCTACTTCTC+TGG 0.424133 4_2:-54254358 Msa0607440:CDS
TTTCTGTGAAATAGTTGCTC+TGG 0.426610 4_2:+54251933 None:intergenic
TCAATGAATGGTTGTAAAGA+AGG 0.426979 4_2:-54254604 Msa0607440:CDS
ATGCCATGCTCCGTATCAAT+TGG 0.432507 4_2:+54247158 None:intergenic
TGTTCAGAGACCTATTTGTA+AGG 0.433073 4_2:-54254638 Msa0607440:intron
TATAGATATCCAATCCCAAT+AGG 0.437928 4_2:+54254249 None:intergenic
GTAAGTCAAGTTCAATTTGA+CGG 0.442874 4_2:+54251844 None:intergenic
AACCCACAAACTGCAGGACT+TGG 0.444658 4_2:+54250741 None:intergenic
CCTGTTGGTTGGTTTGGAGG+AGG 0.445470 4_2:-54250403 Msa0607440:CDS
CCATATCACTAGTGAAGCTT+TGG 0.446524 4_2:-54251904 Msa0607440:CDS
GGATGCTACCTTTCAATGAA+TGG 0.448779 4_2:-54254616 Msa0607440:CDS
TGTTTCAAAGTGATATGGTT+TGG 0.460796 4_2:+54255667 None:intergenic
CAAGTCCAGTTTAAGCAACT+TGG 0.463949 4_2:+54247771 None:intergenic
AAAACTTGTGCCGCTTCTGT+TGG 0.466626 4_2:+54250717 None:intergenic
GAGAGTTGAGGTTCCTATTG+AGG 0.466956 4_2:-54254428 Msa0607440:CDS
AAAGTTCAAGAGAACCAGTT+AGG 0.471129 4_2:-54254570 Msa0607440:CDS
AATGTTGGAGGAGCTTGCTT+AGG 0.475322 4_2:+54253006 None:intergenic
GCCATTGCAGCTGATGCTAC+TGG 0.478778 4_2:+54254523 None:intergenic
TGGCATCAGGTCAGCATTGG+TGG 0.478970 4_2:-54250362 Msa0607440:CDS
AGAATACAAACTAATTAAAT+GGG 0.480513 4_2:-54255694 Msa0607440:five_prime_UTR
TATTTGCTCAATTAACTGGC+AGG 0.481466 4_2:-54250903 Msa0607440:CDS
CCTCCTCCAAACCAACCAAC+AGG 0.481639 4_2:+54250403 None:intergenic
CCTCCATATGCGCGAATCAA+AGG 0.481748 4_2:+54253931 None:intergenic
GCTTTGATATATGCTGGAAC+AGG 0.483044 4_2:-54248113 Msa0607440:CDS
CTAGGTGCTTTGATATATGC+TGG 0.484342 4_2:-54248119 Msa0607440:CDS
TTCACAGGTAGTCTGTGAAA+AGG 0.489229 4_2:-54250977 Msa0607440:intron
ACATTCCTAGTAAAGAAGAT+TGG 0.489547 4_2:-54252966 Msa0607440:CDS
CGTTGGCATCAGGTCAGCAT+TGG 0.491560 4_2:-54250365 Msa0607440:CDS
GTAAACTCAATGTCGTCCTT+CGG 0.493229 4_2:+54251709 None:intergenic
TGGCTGCTTAATATCAATGT+TGG 0.498602 4_2:+54252991 None:intergenic
TTAATTGAGCAAATAAATGT+TGG 0.499910 4_2:+54250911 None:intergenic
TTGGTTAGCATTGCTGGTGT+TGG 0.507263 4_2:-54254307 Msa0607440:CDS
ATATGCTGGAACAGGAATAG+TGG 0.507739 4_2:-54248105 Msa0607440:CDS
TCAAAACGATTGTAGGTTGA+AGG 0.507970 4_2:-54252614 Msa0607440:intron
CTCCATATGCGCGAATCAAA+GGG 0.510017 4_2:+54253932 None:intergenic
ATAAAATTGCAATTATGGAG+AGG 0.516343 4_2:-54247126 Msa0607440:three_prime_UTR
GCTAGAACTCAAAACATCTC+AGG 0.519609 4_2:-54248051 Msa0607440:intron
ACACACTTTATCAACACAAA+TGG 0.520098 4_2:-54255482 Msa0607440:CDS
TTGCCAGAGAAGTAGCATCT+AGG 0.520561 4_2:+54254355 None:intergenic
CTGCTTAATATCAATGTTGG+AGG 0.521541 4_2:+54252994 None:intergenic
ACCAGTAGCATCAGCTGCAA+TGG 0.522993 4_2:-54254524 Msa0607440:CDS
CTAGTGATGGTCCTCTAGCA+CGG 0.525024 4_2:+54251874 None:intergenic
TTCAAAGTGATATGGTTTGG+TGG 0.528437 4_2:+54255670 None:intergenic
TCAAAGTGATATGGTTTGGT+GGG 0.529430 4_2:+54255671 None:intergenic
GGAGAGAGTGAGTTTGCCGT+TGG 0.530327 4_2:-54250382 Msa0607440:CDS
GTGTGTTATTCCAATTGATA+CGG 0.531653 4_2:-54247168 Msa0607440:three_prime_UTR
TGTATGCTGGACCTGTTGGT+TGG 0.531912 4_2:-54250414 Msa0607440:CDS
TTCCTTCACACATAAACTCA+TGG 0.533478 4_2:-54255534 Msa0607440:exon
AAGGAAGAACATGAGGGAGA+TGG 0.535903 4_2:+54255551 None:intergenic
GTTGGAAACCCACAAACTGC+AGG 0.535922 4_2:+54250735 None:intergenic
ATTCCAATTGATACGGAGCA+TGG 0.537685 4_2:-54247161 Msa0607440:three_prime_UTR
CTTTACAACCATTCATTGAA+AGG 0.540015 4_2:+54254608 None:intergenic
AAATGGCTGTGACTGCGAAA+AGG 0.540950 4_2:+54254273 None:intergenic
GTTCAGAGACCTATTTGTAA+GGG 0.543319 4_2:-54254637 Msa0607440:intron
CCTTCAGCCACCTAATGCAC+CGG 0.546354 4_2:-54252570 Msa0607440:CDS
CAACCGCCACTACGCACAAG+TGG 0.553462 4_2:-54255508 Msa0607440:CDS
ATGTGTGAAGGAAGAACATG+AGG 0.555738 4_2:+54255544 None:intergenic
GTTAAGAAACGAAGAGGATG+AGG 0.555871 4_2:-54250881 Msa0607440:intron
TTGGCCGGAACCCGTGCTAG+AGG 0.556180 4_2:-54251885 Msa0607440:CDS
TAAAATTGCAATTATGGAGA+GGG 0.557454 4_2:-54247125 Msa0607440:three_prime_UTR
CATAACATACATGTTGGCGG+TGG 0.557889 4_2:+54255384 None:intergenic
AAACTGCAGGACTTGGGTGA+AGG 0.560757 4_2:+54250748 None:intergenic
AACTGCAGGACTTGGGTGAA+GGG 0.561302 4_2:+54250749 None:intergenic
TTGAACTTGACTTACTTACC+AGG 0.562261 4_2:-54251836 Msa0607440:intron
AATTGCAATTATGGAGAGGG+AGG 0.563266 4_2:-54247122 Msa0607440:three_prime_UTR
ATCACTAGTGAAGCTTTGGC+CGG 0.564206 4_2:-54251900 Msa0607440:CDS
GAAGCAATCCATACTTAGAG+TGG 0.566361 4_2:-54248079 Msa0607440:CDS
TTTGATCGAGGGATGTATGC+TGG 0.570243 4_2:-54250427 Msa0607440:CDS
AGAGGATTGATATTTACAGT+AGG 0.570825 4_2:+54252750 None:intergenic
TTGCATAACATACATGTTGG+CGG 0.573535 4_2:+54255381 None:intergenic
GTTCAGAAGTGTTTGATCGA+GGG 0.574223 4_2:-54250438 Msa0607440:intron
TAGTGATGGTCCTCTAGCAC+GGG 0.574761 4_2:+54251875 None:intergenic
ACCCACAAACTGCAGGACTT+GGG 0.577792 4_2:+54250742 None:intergenic
TGCCATGAGTTTATGTGTGA+AGG 0.579788 4_2:+54255532 None:intergenic
ACTGTGTTTCCGATAAATGC+CGG 0.585235 4_2:+54252551 None:intergenic
AAGCATACGAAGAAAATTGG+AGG 0.588895 4_2:-54251674 Msa0607440:intron
TCTTGGAAACATGAGGTACA+AGG 0.589561 4_2:+54255450 None:intergenic
ATCAATTGGAATAACACACT+TGG 0.595062 4_2:+54247172 None:intergenic
TTGTGGGTTTCCAACAGAAG+CGG 0.597451 4_2:-54250727 Msa0607440:CDS
AACGTGGTTAGCTTGTCTAA+AGG 0.599085 4_2:-54252727 Msa0607440:intron
GGGATGTATGCTGGACCTGT+TGG 0.600180 4_2:-54250418 Msa0607440:CDS
CAATGCTAACCAAGTTTCCA+GGG 0.601314 4_2:+54254317 None:intergenic
CCTTTGATTCGCGCATATGG+AGG 0.602449 4_2:-54253931 Msa0607440:CDS
AAACGATTGTAGGTTGAAGG+TGG 0.602926 4_2:-54252611 Msa0607440:intron
TGTTCAGAAGTGTTTGATCG+AGG 0.604089 4_2:-54250439 Msa0607440:intron
ATAAATGCCGGTGCATTAGG+TGG 0.604297 4_2:+54252563 None:intergenic
AGTAGCATCTAGGAAGCAGA+AGG 0.604523 4_2:+54254365 None:intergenic
TGTAGTTACCTTGGTAAGTG+AGG 0.606511 4_2:+54252897 None:intergenic
CGTTGTCTCTTGGAAACATG+AGG 0.612604 4_2:+54255443 None:intergenic
GCTGGAACAGGAATAGTGGA+AGG 0.616523 4_2:-54248101 Msa0607440:CDS
AAGGAACAGAAATCTTGCCC+TGG 0.617216 4_2:-54254334 Msa0607440:CDS
GGGATTGGATATCTATAAGG+AGG 0.620357 4_2:-54254243 Msa0607440:intron
AGCATCTAGGAAGCAGAAGG+TGG 0.620967 4_2:+54254368 None:intergenic
CCGGTGCATTAGGTGGCTGA+AGG 0.623228 4_2:+54252570 None:intergenic
CAATGCTGACCTGATGCCAA+CGG 0.626025 4_2:+54250366 None:intergenic
AAGCAATCCATACTTAGAGT+GGG 0.626819 4_2:-54248078 Msa0607440:CDS
AACTCTCACTATGCCAGATG+AGG 0.629562 4_2:+54254444 None:intergenic
AAATGATTCCTCACTTACCA+AGG 0.633006 4_2:-54252905 Msa0607440:intron
AAACTCAGGTTGTTCTAGCG+CGG 0.633096 4_2:-54252788 Msa0607440:intron
TTGCTTAGGAAACTTTACAA+TGG 0.633615 4_2:+54253020 None:intergenic
TGACGGTCTAGTGCTAGTGA+TGG 0.637405 4_2:+54251861 None:intergenic
TGTGTGAAGGAAGAACATGA+GGG 0.641198 4_2:+54255545 None:intergenic
GAGCCACTTGTGCGTAGTGG+CGG 0.645954 4_2:+54255505 None:intergenic
TGTGAGCCACTTGTGCGTAG+TGG 0.647550 4_2:+54255502 None:intergenic
ATCTGGCATAGTGAGAGTTG+AGG 0.648266 4_2:-54254440 Msa0607440:CDS
TAGATGCTACTTCTCTGGCA+AGG 0.649242 4_2:-54254353 Msa0607440:CDS
TGGCAGGTTAAGAAACGAAG+AGG 0.667104 4_2:-54250887 Msa0607440:CDS
ATAGACGTTGTGTAAGCACA+AGG 0.667707 4_2:+54247210 None:intergenic
GTGAGAAAGAAAGACAGTGG+TGG 0.672801 4_2:+54255634 None:intergenic
AAATGATCAGAAAACTACCA+AGG 0.680764 4_2:-54250936 Msa0607440:CDS
ATTGCAGCTGATGCTACTGG+TGG 0.696479 4_2:+54254526 None:intergenic
AAAGTGAGAAAGAAAGACAG+TGG 0.696625 4_2:+54255631 None:intergenic
TGACTGCGAAAAGGAAACAG+CGG 0.721026 4_2:+54254282 None:intergenic
TAAATATCAATCCTCTAACG+TGG 0.724878 4_2:-54252743 Msa0607440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGTATGTTTTATAAATTT+TGG - chr4_2:54250536-54250555 Msa0607440:intron 10.0%
!!! TTATTTTTTTTCTTTCTTTT+TGG - chr4_2:54250909-54250928 Msa0607440:CDS 10.0%
!! TATCAAATAAAAAACTATAA+GGG + chr4_2:54255629-54255648 None:intergenic 10.0%
!! TTATCAAATAAAAAACTATA+AGG + chr4_2:54255630-54255649 None:intergenic 10.0%
!! AAGAATACAAACTAATTAAA+TGG - chr4_2:54246955-54246974 Msa0607440:three_prime_UTR 15.0%
!! AGAATACAAACTAATTAAAT+GGG - chr4_2:54246956-54246975 Msa0607440:three_prime_UTR 15.0%
!!! TTTAATTAATTTGATACTAG+AGG - chr4_2:54247511-54247530 Msa0607440:intron 15.0%
!! TAAACTATATATAGAATTTG+TGG + chr4_2:54247648-54247667 None:intergenic 15.0%
!! TGTAATTGAAATAAGTTATT+TGG - chr4_2:54247719-54247738 Msa0607440:intron 15.0%
!!! TCAAGTTTTCAAAAAATATT+TGG - chr4_2:54247939-54247958 Msa0607440:intron 15.0%
!!! TTGTAATTTTAATACATTCA+AGG - chr4_2:54249049-54249068 Msa0607440:intron 15.0%
!! ACTTATATGATAAATGTTTA+TGG - chr4_2:54249519-54249538 Msa0607440:intron 15.0%
!! AAATAGTATGTAATAAGAAT+AGG + chr4_2:54250435-54250454 None:intergenic 15.0%
!! CATAATATAGTTTCAAAAAA+GGG + chr4_2:54250582-54250601 None:intergenic 15.0%
!! TCATAATATAGTTTCAAAAA+AGG + chr4_2:54250583-54250602 None:intergenic 15.0%
!! CAAGTTCATAAAAATTAAAA+TGG + chr4_2:54250689-54250708 None:intergenic 15.0%
!!! ATTTTTATACTTTTCATTGT+TGG - chr4_2:54251006-54251025 Msa0607440:intron 15.0%
!!! TTAAATAAAGTTACTTTCAT+TGG + chr4_2:54251828-54251847 None:intergenic 15.0%
!! AAATAAAAACATATACGTTT+AGG + chr4_2:54252049-54252068 None:intergenic 15.0%
!!! CAATAATATTTTATACTACT+TGG + chr4_2:54254235-54254254 None:intergenic 15.0%
!!! TTCAATTTGTTTCATTTATA+TGG - chr4_2:54254989-54255008 Msa0607440:intron 15.0%
!!! TTTTGTTCTAAATAGTATAA+CGG + chr4_2:54255242-54255261 None:intergenic 15.0%
!!! ACTATTTAGAACAAAAAAAA+AGG - chr4_2:54255246-54255265 Msa0607440:intron 15.0%
!! TTCAAATTGATCTTTATAAA+TGG + chr4_2:54255312-54255331 None:intergenic 15.0%
!! TTTGTATTCTTCATTTCATT+AGG + chr4_2:54246946-54246965 None:intergenic 20.0%
!! ACATATAAATTGGTTACTAA+TGG + chr4_2:54247329-54247348 None:intergenic 20.0%
!!! AACATATTTTTGATACCAAA+GGG + chr4_2:54247474-54247493 None:intergenic 20.0%
!!! TAACATATTTTTGATACCAA+AGG + chr4_2:54247475-54247494 None:intergenic 20.0%
!! ATTTACGAAGAGTTTATTTA+TGG - chr4_2:54247579-54247598 Msa0607440:intron 20.0%
!!! TTTTTTGAAAACTTGATATC+CGG + chr4_2:54247935-54247954 None:intergenic 20.0%
!!! CTAATAGTCTATTCAAATTT+TGG - chr4_2:54247977-54247996 Msa0607440:intron 20.0%
!! AACTAACTTCATAAATTTCA+AGG + chr4_2:54248448-54248467 None:intergenic 20.0%
!!! TTGTGAACTATCTATATTTT+GGG + chr4_2:54248537-54248556 None:intergenic 20.0%
!!! TTTGTGAACTATCTATATTT+TGG + chr4_2:54248538-54248557 None:intergenic 20.0%
!! ATTAGAAAATAAGTCATGTT+TGG - chr4_2:54248582-54248601 Msa0607440:intron 20.0%
!!! GTCTTTTGTTACTAATTTTA+TGG + chr4_2:54249013-54249032 None:intergenic 20.0%
!!! TAGATTTTCTTTAGATTATC+AGG - chr4_2:54249551-54249570 Msa0607440:intron 20.0%
!! GTGTTATCTTAAATAAAATG+CGG - chr4_2:54249991-54250010 Msa0607440:intron 20.0%
!! ATATCTTAAAAGTCATCATA+AGG - chr4_2:54250602-54250621 Msa0607440:intron 20.0%
!! TCAGAATATAGTTTCAAAAA+AGG + chr4_2:54250635-54250654 None:intergenic 20.0%
!!! ATATAAAAACTGCTGTTTTA+TGG - chr4_2:54250861-54250880 Msa0607440:intron 20.0%
!!! GTACAATGATATTTGTTTTT+AGG - chr4_2:54251153-54251172 Msa0607440:intron 20.0%
!! TTGATGTCTTCAAAAAAAAA+GGG + chr4_2:54251198-54251217 None:intergenic 20.0%
!! ATTGATGTCTTCAAAAAAAA+AGG + chr4_2:54251199-54251218 None:intergenic 20.0%
!! GAAATTGTGAATTTAGAAAT+GGG + chr4_2:54251265-54251284 None:intergenic 20.0%
!!! GTTTTCCTTATTTACTATTT+TGG + chr4_2:54251415-54251434 None:intergenic 20.0%
!!! AATTTTTAGAATTAAGCTGT+TGG - chr4_2:54251477-54251496 Msa0607440:intron 20.0%
!! TTAATTGAGCAAATAAATGT+TGG + chr4_2:54251742-54251761 None:intergenic 20.0%
!!! TATTTTAGAAATGCAAAATG+TGG - chr4_2:54252064-54252083 Msa0607440:intron 20.0%
!!! TTTTGTCTATGTTCAAAAAT+GGG + chr4_2:54252141-54252160 None:intergenic 20.0%
!!! TTTTTGTCTATGTTCAAAAA+TGG + chr4_2:54252142-54252161 None:intergenic 20.0%
!! ATTGTTCTTACGATAAAATA+CGG - chr4_2:54252188-54252207 Msa0607440:intron 20.0%
!! GTATGATATAAAACTTCTAT+CGG + chr4_2:54252463-54252482 None:intergenic 20.0%
!!! AATGGAATTTTAATATCAGA+CGG - chr4_2:54252788-54252807 Msa0607440:intron 20.0%
!!! AGAAATATTGATCTAAAGTT+AGG + chr4_2:54252937-54252956 None:intergenic 20.0%
!!! ATATTTCTCAAAAGCATAAT+TGG - chr4_2:54252949-54252968 Msa0607440:CDS 20.0%
!! TAAAACGAACTTATATCAAT+TGG + chr4_2:54253410-54253429 None:intergenic 20.0%
!!! TTGATATAAGTTCGTTTTAA+TGG - chr4_2:54253411-54253430 Msa0607440:intron 20.0%
!!! ATTTTTAGAGTTTGAATCAA+CGG - chr4_2:54253539-54253558 Msa0607440:intron 20.0%
!! TAAAACGAACTTATATCAAT+TGG + chr4_2:54253410-54253429 None:intergenic 20.0%
!!! TTGATATAAGTTCGTTTTAA+TGG - chr4_2:54253411-54253430 Msa0607440:intron 20.0%
!! TAAAACGAACTTATATCAAT+TGG + chr4_2:54253410-54253429 None:intergenic 20.0%
!!! TTGATATAAGTTCGTTTTAA+TGG - chr4_2:54253411-54253430 Msa0607440:intron 20.0%
!!! ATTTTTAGAGTTTGAATCAA+CGG - chr4_2:54253539-54253558 Msa0607440:intron 20.0%
!!! AACTCTAGCTTTTATAATAA+AGG - chr4_2:54254161-54254180 Msa0607440:intron 20.0%
!! AAAATATTATTGTATCTACG+AGG - chr4_2:54254243-54254262 Msa0607440:intron 20.0%
!!! ATCTTCAAAAGATTTTTTAC+CGG - chr4_2:54254459-54254478 Msa0607440:CDS 20.0%
!!! ACTTAAAATTTGTTTTTGTG+AGG - chr4_2:54255031-54255050 Msa0607440:intron 20.0%
!! TCTTTATAAATGGTTTCTAT+GGG + chr4_2:54255302-54255321 None:intergenic 20.0%
!! ATCTTTATAAATGGTTTCTA+TGG + chr4_2:54255303-54255322 None:intergenic 20.0%
!!! AAAATTATATTTTTGGTGCA+TGG + chr4_2:54255343-54255362 None:intergenic 20.0%
!! ATATAATACAACATGTACTA+TGG + chr4_2:54255598-54255617 None:intergenic 20.0%
!! ACTAATGGATAACAAAAAGA+TGG + chr4_2:54247314-54247333 None:intergenic 25.0%
! TTGCATTGTTATGTGAATTA+AGG - chr4_2:54247447-54247466 Msa0607440:intron 25.0%
!!! TCCATATCGACTTATAATTT+GGG - chr4_2:54247757-54247776 Msa0607440:CDS 25.0%
!!! CATTTAACTGTCATTTTAGA+TGG - chr4_2:54247793-54247812 Msa0607440:intron 25.0%
! TAGATGTGTTGAAATATCAA+TGG + chr4_2:54247855-54247874 None:intergenic 25.0%
!!! ATGAATTTGTTAACCATGTT+TGG - chr4_2:54248470-54248489 Msa0607440:intron 25.0%
! AAAATATCAAATAGTAGCTG+TGG + chr4_2:54248653-54248672 None:intergenic 25.0%
!! GTTGAAAATTTTCACTTTGA+AGG - chr4_2:54248678-54248697 Msa0607440:intron 25.0%
! GTTCTTTCCAAAAACTAATT+TGG - chr4_2:54248831-54248850 Msa0607440:intron 25.0%
! ACTAAGGAAAGAAACATTTA+GGG + chr4_2:54248917-54248936 None:intergenic 25.0%
! AGTAACAAAAGACATAACTA+AGG - chr4_2:54249020-54249039 Msa0607440:intron 25.0%
! AAATGAGTAAATCATCAGTT+TGG + chr4_2:54249107-54249126 None:intergenic 25.0%
! GATTTACTCATTTATAGCAT+TGG - chr4_2:54249114-54249133 Msa0607440:intron 25.0%
! AATAAGCTGAAAACATCTTA+TGG + chr4_2:54249397-54249416 None:intergenic 25.0%
!!! ATCTCATGCTTTTTCTTTAT+TGG - chr4_2:54249775-54249794 Msa0607440:intron 25.0%
! ATTTGACGGAGAAAAAAAAA+AGG + chr4_2:54249965-54249984 None:intergenic 25.0%
!! TATATGTTTTCTTTTGAACC+AGG - chr4_2:54250396-54250415 Msa0607440:CDS 25.0%
!! ATATGTTTTCTTTTGAACCA+GGG - chr4_2:54250397-54250416 Msa0607440:CDS 25.0%
! ATCATGTGAAATTCATTATG+TGG + chr4_2:54250497-54250516 None:intergenic 25.0%
! AATAAAAATCACAAGCATCA+GGG + chr4_2:54250894-54250913 None:intergenic 25.0%
! AAATAAAAATCACAAGCATC+AGG + chr4_2:54250895-54250914 None:intergenic 25.0%
! AACAAAATCTAACGTACATT+AGG + chr4_2:54251055-54251074 None:intergenic 25.0%
! GGAAATTGTGAATTTAGAAA+TGG + chr4_2:54251266-54251285 None:intergenic 25.0%
! CAATATCATCGAAATGTATA+GGG + chr4_2:54251323-54251342 None:intergenic 25.0%
! TCAATATCATCGAAATGTAT+AGG + chr4_2:54251324-54251343 None:intergenic 25.0%
! TTGAAATTGAAATGCTTATG+TGG - chr4_2:54251340-54251359 Msa0607440:intron 25.0%
! TAGTAAATAAGGAAAACTAG+AGG - chr4_2:54251418-54251437 Msa0607440:intron 25.0%
! AAATTCATCACATAGAAACA+AGG + chr4_2:54251462-54251481 None:intergenic 25.0%
!! AGTTTTCTGATCATTTTCTT+TGG + chr4_2:54251710-54251729 None:intergenic 25.0%
! CATTTATTTGCTCAATTAAC+TGG - chr4_2:54251743-54251762 Msa0607440:intron 25.0%
! AAAATGACAACTTCGTTATA+TGG + chr4_2:54251857-54251876 None:intergenic 25.0%
! AAACAACAATGTATGGAAAA+TGG + chr4_2:54251979-54251998 None:intergenic 25.0%
! GTATTAGAAACAACAATGTA+TGG + chr4_2:54251986-54252005 None:intergenic 25.0%
! TGATAGCATACATAACAAAA+AGG - chr4_2:54252497-54252516 Msa0607440:intron 25.0%
! TTGAAAATACTAATCGTTGA+TGG + chr4_2:54252605-54252624 None:intergenic 25.0%
! TGTCTTCTCTTAAATTTGAA+TGG - chr4_2:54252770-54252789 Msa0607440:CDS 25.0%
! ATTATATCTGGAAGTAACAT+CGG + chr4_2:54252853-54252872 None:intergenic 25.0%
!! GACTGATATATCATATTTTC+AGG + chr4_2:54253196-54253215 None:intergenic 25.0%
! GAATTACTTATACATAGTTC+AGG + chr4_2:54253273-54253292 None:intergenic 25.0%
! GAACTATGTATAAGTAATTC+CGG - chr4_2:54253273-54253292 Msa0607440:intron 25.0%
! CAAAAAAATCATAAATGACG+TGG + chr4_2:54253319-54253338 None:intergenic 25.0%
!!! TTTTGATTAGCAATTAGTGT+AGG - chr4_2:54253334-54253353 Msa0607440:intron 25.0%
! TTTGATTAGCAATTAGTGTA+GGG - chr4_2:54253335-54253354 Msa0607440:intron 25.0%
!!! TTTTTAGAGTTTGAATCAAC+GGG - chr4_2:54253540-54253559 Msa0607440:intron 25.0%
!!! TTTTGATTAGCAATTAGTGT+AGG - chr4_2:54253334-54253353 Msa0607440:intron 25.0%
! TTTGATTAGCAATTAGTGTA+GGG - chr4_2:54253335-54253354 Msa0607440:intron 25.0%
!!! TTTTGATTAGCAATTAGTGT+AGG - chr4_2:54253334-54253353 Msa0607440:intron 25.0%
! TTTGATTAGCAATTAGTGTA+GGG - chr4_2:54253335-54253354 Msa0607440:intron 25.0%
!!! TTTTTAGAGTTTGAATCAAC+GGG - chr4_2:54253540-54253559 Msa0607440:intron 25.0%
! ATGTGAAAATAGAGTTTGAA+CGG - chr4_2:54254042-54254061 Msa0607440:intron 25.0%
! GTAGCAATTAGTACTTATTT+AGG - chr4_2:54254076-54254095 Msa0607440:intron 25.0%
! CAATTAGTACTTATTTAGGA+GGG - chr4_2:54254080-54254099 Msa0607440:intron 25.0%
! TTATAAAAGCTAGAGTTGTT+TGG + chr4_2:54254158-54254177 None:intergenic 25.0%
! ATATAGGATCTCAATTAACT+TGG + chr4_2:54254284-54254303 None:intergenic 25.0%
!! AATTGGTTGATTTATAGTAG+CGG - chr4_2:54254320-54254339 Msa0607440:CDS 25.0%
!!! GAGTATTGAGATACTAATAA+TGG + chr4_2:54254433-54254452 None:intergenic 25.0%
!! CATTTGCAAGTTTTTATAAC+AGG - chr4_2:54254506-54254525 Msa0607440:CDS 25.0%
!! AAGTTTTTATAACAGGATCT+AGG - chr4_2:54254513-54254532 Msa0607440:CDS 25.0%
!! ATGTGAATGCATACATATTT+TGG - chr4_2:54254627-54254646 Msa0607440:CDS 25.0%
! ACATGTATCTGGTATAAATT+AGG + chr4_2:54254747-54254766 None:intergenic 25.0%
!! ATACTGAATGTATGTTGATT+TGG - chr4_2:54254845-54254864 Msa0607440:intron 25.0%
! AAAAGAATGTATTATTCCGA+TGG - chr4_2:54255107-54255126 Msa0607440:intron 25.0%
! TATGTATTAATATCTCACAG+CGG + chr4_2:54255169-54255188 None:intergenic 25.0%
!! TTTCTTTGCTTTAGATATTG+TGG - chr4_2:54255414-54255433 Msa0607440:CDS 25.0%
!! CCATAATTGCAATTTTATTG+AGG + chr4_2:54255522-54255541 None:intergenic 25.0%
! CCTCAATAAAATTGCAATTA+TGG - chr4_2:54255519-54255538 Msa0607440:exon 25.0%
! ATAAAATTGCAATTATGGAG+AGG - chr4_2:54255524-54255543 Msa0607440:exon 25.0%
! TAAAATTGCAATTATGGAGA+GGG - chr4_2:54255525-54255544 Msa0607440:exon 25.0%
!! CATTACTTTAAGAACAACTT+TGG + chr4_2:54255711-54255730 None:intergenic 25.0%
TGTTTCAAAGTGATATGGTT+TGG + chr4_2:54246986-54247005 None:intergenic 30.0%
!! GTTGTTGTTTCAAAGTGATA+TGG + chr4_2:54246991-54247010 None:intergenic 30.0%
ACACACTTTATCAACACAAA+TGG - chr4_2:54247168-54247187 Msa0607440:three_prime_UTR 30.0%
AGTTTGCATAACATACATGT+TGG + chr4_2:54247275-54247294 None:intergenic 30.0%
GTTGCAACACACATATAAAT+TGG + chr4_2:54247339-54247358 None:intergenic 30.0%
TCGTAAATAATCTTACAGAC+AGG + chr4_2:54247567-54247586 None:intergenic 30.0%
!! CTCCATATCGACTTATAATT+TGG - chr4_2:54247756-54247775 Msa0607440:CDS 30.0%
TCCCAAATTATAAGTCGATA+TGG + chr4_2:54247761-54247780 None:intergenic 30.0%
!! TATCGACTTATAATTTGGGA+TGG - chr4_2:54247761-54247780 Msa0607440:CDS 30.0%
TAATAATCCAAAGCTTGAGT+CGG - chr4_2:54247901-54247920 Msa0607440:intron 30.0%
CTTTACAACCATTCATTGAA+AGG + chr4_2:54248045-54248064 None:intergenic 30.0%
TCAATGAATGGTTGTAAAGA+AGG - chr4_2:54248046-54248065 Msa0607440:intron 30.0%
TATAGATATCCAATCCCAAT+AGG + chr4_2:54248404-54248423 None:intergenic 30.0%
ATTGGGATTGGATATCTATA+AGG - chr4_2:54248404-54248423 Msa0607440:intron 30.0%
TCATAAATTTCAAGGAACCA+AGG + chr4_2:54248440-54248459 None:intergenic 30.0%
!! AAAGCATTGACAGTTTGATT+CGG + chr4_2:54248512-54248531 None:intergenic 30.0%
GAAAATAAGTCATGTTTGGT+TGG - chr4_2:54248586-54248605 Msa0607440:intron 30.0%
!!! CATTAGCTTTTGCATTGAAA+CGG + chr4_2:54248748-54248767 None:intergenic 30.0%
!! TAGTTTTTGGAAAGAACACA+GGG + chr4_2:54248828-54248847 None:intergenic 30.0%
!! TTAGTTTTTGGAAAGAACAC+AGG + chr4_2:54248829-54248848 None:intergenic 30.0%
!!! TGAAGGACCAAATTAGTTTT+TGG + chr4_2:54248841-54248860 None:intergenic 30.0%
CACTAAGGAAAGAAACATTT+AGG + chr4_2:54248918-54248937 None:intergenic 30.0%
! GTGTCTTTTGTTAGTTAGTT+TGG - chr4_2:54248954-54248973 Msa0607440:intron 30.0%
!!! TCAACCTGTCAATTTTTTCT+CGG + chr4_2:54249157-54249176 None:intergenic 30.0%
ACTTTGCAAAGTAAGTGTTA+GGG - chr4_2:54249279-54249298 Msa0607440:intron 30.0%
TCAAAAAAGTCAATCCAAAC+AGG + chr4_2:54249305-54249324 None:intergenic 30.0%
TAAACACATTCAAGACTGTT+TGG - chr4_2:54249340-54249359 Msa0607440:intron 30.0%
AAACACATTCAAGACTGTTT+GGG - chr4_2:54249341-54249360 Msa0607440:intron 30.0%
TTGCTTAGGAAACTTTACAA+TGG + chr4_2:54249633-54249652 None:intergenic 30.0%
CTTCTTTACTAGGAATGTTA+TGG + chr4_2:54249682-54249701 None:intergenic 30.0%
ACATTCCTAGTAAAGAAGAT+TGG - chr4_2:54249684-54249703 Msa0607440:intron 30.0%
AGATTCCAATCTTCTTTACT+AGG + chr4_2:54249692-54249711 None:intergenic 30.0%
GAAGAAAATGAGCTTTCAAA+TGG + chr4_2:54249831-54249850 None:intergenic 30.0%
! CTCATTTTCTTCTTCCATAT+TGG - chr4_2:54249839-54249858 Msa0607440:intron 30.0%
AGAGGATTGATATTTACAGT+AGG + chr4_2:54249903-54249922 None:intergenic 30.0%
TAAATATCAATCCTCTAACG+TGG - chr4_2:54249907-54249926 Msa0607440:intron 30.0%
CTTAAATAAAATGCGGTAGA+AGG - chr4_2:54249998-54250017 Msa0607440:intron 30.0%
GTATACATCAAAACGATTGT+AGG - chr4_2:54250029-54250048 Msa0607440:intron 30.0%
! ACACCCTTATCTTTTTATGT+CGG - chr4_2:54250161-54250180 Msa0607440:intron 30.0%
TACCCGACATAAAAAGATAA+GGG + chr4_2:54250167-54250186 None:intergenic 30.0%
ATACCCGACATAAAAAGATA+AGG + chr4_2:54250168-54250187 None:intergenic 30.0%
! TTATCTTTTTATGTCGGGTA+TGG - chr4_2:54250167-54250186 Msa0607440:intron 30.0%
! TATCTTTTTATGTCGGGTAT+GGG - chr4_2:54250168-54250187 Msa0607440:intron 30.0%
CTCATAGTTTACTGATAAGT+GGG - chr4_2:54250198-54250217 Msa0607440:intron 30.0%
AAGTTGTATTATGTAACCCT+AGG - chr4_2:54250269-54250288 Msa0607440:intron 30.0%
! TTTTCTATTATCCAAGCCTA+GGG + chr4_2:54250288-54250307 None:intergenic 30.0%
! ATTTTCTATTATCCAAGCCT+AGG + chr4_2:54250289-54250308 None:intergenic 30.0%
TCTTAAAAGTCATCATAAGG+AGG - chr4_2:54250605-54250624 Msa0607440:intron 30.0%
AGCAACTATTTCACAGAAAA+TGG - chr4_2:54250721-54250740 Msa0607440:CDS 30.0%
GTAAGTCAAGTTCAATTTGA+CGG + chr4_2:54250809-54250828 None:intergenic 30.0%
! AGAAAGCATACGAAGAAAAT+TGG - chr4_2:54250973-54250992 Msa0607440:CDS 30.0%
!!! ATGTTTTTTCCTCAAATCCT+TGG - chr4_2:54251080-54251099 Msa0607440:intron 30.0%
TCCTTGGATACTGATATAAT+AGG - chr4_2:54251096-54251115 Msa0607440:intron 30.0%
TATAATAGGCATGCAATAGA+TGG - chr4_2:54251110-54251129 Msa0607440:intron 30.0%
! TTAGGCTTGAATCACAATTT+TGG - chr4_2:54251171-54251190 Msa0607440:intron 30.0%
! CTTTGTCTCAATCACAATTT+TGG - chr4_2:54251236-54251255 Msa0607440:intron 30.0%
! TCCATCCACAATTTTCAAAA+TGG - chr4_2:54251283-54251302 Msa0607440:intron 30.0%
!! TCCATTTTGAAAATTGTGGA+TGG + chr4_2:54251287-54251306 None:intergenic 30.0%
!! GTCATCCATTTTGAAAATTG+TGG + chr4_2:54251291-54251310 None:intergenic 30.0%
GGATTATACATAATAGCATG+AGG + chr4_2:54251503-54251522 None:intergenic 30.0%
! GAAGGTCTAAAATGATTGTA+AGG + chr4_2:54251611-54251630 None:intergenic 30.0%
GAAAACATGTACGTAGTTAA+AGG + chr4_2:54251656-54251675 None:intergenic 30.0%
AAATGATCAGAAAACTACCA+AGG - chr4_2:54251714-54251733 Msa0607440:intron 30.0%
TTCTCACTTAAACTGTAACA+TGG + chr4_2:54251798-54251817 None:intergenic 30.0%
CTTGTAATAAAGTCAAAGTG+AGG - chr4_2:54252092-54252111 Msa0607440:intron 30.0%
TGAGGTGATATTGATATGTT+TGG - chr4_2:54252110-54252129 Msa0607440:intron 30.0%
TCTTTCGTAATGTATCTTGA+TGG + chr4_2:54252535-54252554 None:intergenic 30.0%
TTCGTGATAAACAACATTTG+AGG - chr4_2:54252556-54252575 Msa0607440:CDS 30.0%
ATGGCAAATGAAACAGATAT+TGG - chr4_2:54252743-54252762 Msa0607440:CDS 30.0%
CTTGAAGCAAAGATTATATC+TGG + chr4_2:54252865-54252884 None:intergenic 30.0%
! AAGTACAAATTTTCCCATTC+TGG - chr4_2:54252882-54252901 Msa0607440:intron 30.0%
!! AAATTTTCCCATTCTGGTTA+TGG - chr4_2:54252888-54252907 Msa0607440:intron 30.0%
CTAAAGTTAGGATTATGCAA+TGG + chr4_2:54252925-54252944 None:intergenic 30.0%
CACAAGATAAGATTGAAGAT+TGG + chr4_2:54252979-54252998 None:intergenic 30.0%
TTCAATCTTATCTTGTGATG+TGG - chr4_2:54252982-54253001 Msa0607440:CDS 30.0%
TCAATCTTATCTTGTGATGT+GGG - chr4_2:54252983-54253002 Msa0607440:CDS 30.0%
TTTATTGTGTTGAGAAACTC+TGG - chr4_2:54253018-54253037 Msa0607440:CDS 30.0%
! AAATATGTTTTCTCTTCACC+AGG - chr4_2:54253102-54253121 Msa0607440:intron 30.0%
TACATGTTAGATTTGATTCC+TGG + chr4_2:54253123-54253142 None:intergenic 30.0%
TTGATTAGCAATTAGTGTAG+GGG - chr4_2:54253336-54253355 Msa0607440:intron 30.0%
TCTTGATTAGCAATTAGTGT+AGG - chr4_2:54253447-54253466 Msa0607440:intron 30.0%
CTTGATTAGCAATTAGTGTA+GGG - chr4_2:54253448-54253467 Msa0607440:intron 30.0%
TTGATTAGCAATTAGTGTAG+GGG - chr4_2:54253336-54253355 Msa0607440:intron 30.0%
TGCATTAACGAAGTTATATG+AGG - chr4_2:54253512-54253531 Msa0607440:intron 30.0%
GCATTAACGAAGTTATATGA+GGG - chr4_2:54253513-54253532 Msa0607440:intron 30.0%
GTGTGAAAATAGAGTTTGAA+CGG - chr4_2:54253572-54253591 Msa0607440:intron 30.0%
TGTGAAAATAGAGTTTGAAC+GGG - chr4_2:54253573-54253592 Msa0607440:intron 30.0%
GTAGCAATTAGTACTTGTTT+AGG - chr4_2:54253606-54253625 Msa0607440:intron 30.0%
CAATTAGTACTTGTTTAGGA+GGG - chr4_2:54253610-54253629 Msa0607440:intron 30.0%
CTAGGCATTATAGCAAAATA+GGG - chr4_2:54253640-54253659 Msa0607440:intron 30.0%
ATAGCAAAATAGGGTGAATT+AGG - chr4_2:54253649-54253668 Msa0607440:intron 30.0%
TAGCAAAATAGGGTGAATTA+GGG - chr4_2:54253650-54253669 Msa0607440:intron 30.0%
! AAATAAAAGCTAGACTTGCT+TGG + chr4_2:54253737-54253756 None:intergenic 30.0%
TTGATTAGCAATTAGTGTAG+GGG - chr4_2:54253336-54253355 Msa0607440:intron 30.0%
GGATTGTTGAACAAATTGAT+TGG - chr4_2:54253827-54253846 Msa0607440:intron 30.0%
TTGATTAGCAATTAGTGTAG+GGG - chr4_2:54253336-54253355 Msa0607440:intron 30.0%
TGCATTAACGAAGATATATG+AGG - chr4_2:54253982-54254001 Msa0607440:intron 30.0%
TGTGAAAATAGAGTTTGAAC+GGG - chr4_2:54253573-54253592 Msa0607440:intron 30.0%
GCAATTAGTACTTATTTAGG+AGG - chr4_2:54254079-54254098 Msa0607440:intron 30.0%
TCCTATATTATGTAGACGAA+CGG - chr4_2:54254296-54254315 Msa0607440:CDS 30.0%
!! TAATGGATTACTGAAATTCC+TGG + chr4_2:54254416-54254435 None:intergenic 30.0%
! TAGCAATATTTTGCAGTGAA+TGG + chr4_2:54254665-54254684 None:intergenic 30.0%
TCGCTTATATTTCATTCTAG+AGG - chr4_2:54254773-54254792 Msa0607440:intron 30.0%
AAATCAAACAACTAAGCCAT+CGG + chr4_2:54255126-54255145 None:intergenic 30.0%
GGCATGTCTATTGTAAATTT+AGG - chr4_2:54255267-54255286 Msa0607440:intron 30.0%
ATCAATTGGAATAACACACT+TGG + chr4_2:54255481-54255500 None:intergenic 30.0%
! GTGTGTTATTCCAATTGATA+CGG - chr4_2:54255482-54255501 Msa0607440:CDS 30.0%
AGTCAAATGAACACACAATT+TGG + chr4_2:54255563-54255582 None:intergenic 30.0%
!! TCAAAGTGATATGGTTTGGT+GGG + chr4_2:54246982-54247001 None:intergenic 35.0%
! TTCAAAGTGATATGGTTTGG+TGG + chr4_2:54246983-54247002 None:intergenic 35.0%
AAAGTGAGAAAGAAAGACAG+TGG + chr4_2:54247022-54247041 None:intergenic 35.0%
TTCCTTCACACATAAACTCA+TGG - chr4_2:54247116-54247135 Msa0607440:three_prime_UTR 35.0%
TTGCATAACATACATGTTGG+CGG + chr4_2:54247272-54247291 None:intergenic 35.0%
TATGTGAATTAAGGACCCTT+TGG - chr4_2:54247456-54247475 Msa0607440:intron 35.0%
TGATACTAGAGGCTTATTTG+AGG - chr4_2:54247522-54247541 Msa0607440:intron 35.0%
! GACTTATAATTTGGGATGGA+GGG - chr4_2:54247765-54247784 Msa0607440:CDS 35.0%
!!! ACTGTCATTTTAGATGGCAA+AGG - chr4_2:54247799-54247818 Msa0607440:intron 35.0%
TGTTCAGAGACCTATTTGTA+AGG - chr4_2:54248012-54248031 Msa0607440:intron 35.0%
GTTCAGAGACCTATTTGTAA+GGG - chr4_2:54248013-54248032 Msa0607440:intron 35.0%
AAAGTTCAAGAGAACCAGTT+AGG - chr4_2:54248080-54248099 Msa0607440:CDS 35.0%
! AGCAAGTTGAAGCAATTGAT+TGG - chr4_2:54248245-54248264 Msa0607440:intron 35.0%
ATCCAATCCCAATAGGAAAA+TGG + chr4_2:54248397-54248416 None:intergenic 35.0%
TATAAGGAGGTAATTCACCT+TGG - chr4_2:54248420-54248439 Msa0607440:intron 35.0%
GAAGTTAGCAAAACCAAACA+TGG + chr4_2:54248486-54248505 None:intergenic 35.0%
!! AAGCATTGACAGTTTGATTC+GGG + chr4_2:54248511-54248530 None:intergenic 35.0%
AAGCTAATGTTTCATCAGAG+TGG - chr4_2:54248759-54248778 Msa0607440:intron 35.0%
TAATGTTTCATCAGAGTGGA+TGG - chr4_2:54248763-54248782 Msa0607440:intron 35.0%
TTTCTACTTCATGATTCCTC+AGG - chr4_2:54248796-54248815 Msa0607440:intron 35.0%
AACAACGTTTGACACATTGA+AGG + chr4_2:54248858-54248877 None:intergenic 35.0%
GTTTCTTTCCTTAGTGAGTT+TGG - chr4_2:54248922-54248941 Msa0607440:intron 35.0%
TTCAAAGACCAAACTCACTA+AGG + chr4_2:54248933-54248952 None:intergenic 35.0%
GTTGAGTTTAATGAGCTTGA+AGG - chr4_2:54249172-54249191 Msa0607440:intron 35.0%
ATTATCCCAAGCAATAGTAG+TGG + chr4_2:54249212-54249231 None:intergenic 35.0%
CTTGGGATAATGATCTTTGT+TGG - chr4_2:54249221-54249240 Msa0607440:intron 35.0%
ATAATGATCTTTGTTGGTCG+TGG - chr4_2:54249227-54249246 Msa0607440:intron 35.0%
TAATGATCTTTGTTGGTCGT+GGG - chr4_2:54249228-54249247 Msa0607440:intron 35.0%
CACTTTGCAAAGTAAGTGTT+AGG - chr4_2:54249278-54249297 Msa0607440:intron 35.0%
TCTTTAGATTATCAGGACTC+AGG - chr4_2:54249558-54249577 Msa0607440:intron 35.0%
ACTATGCATCTTTGTATTGC+AGG - chr4_2:54249598-54249617 Msa0607440:intron 35.0%
CTGCTTAATATCAATGTTGG+AGG + chr4_2:54249659-54249678 None:intergenic 35.0%
TGGCTGCTTAATATCAATGT+TGG + chr4_2:54249662-54249681 None:intergenic 35.0%
AAATGATTCCTCACTTACCA+AGG - chr4_2:54249745-54249764 Msa0607440:intron 35.0%
TTCTTCCATATTGGAAACTC+AGG - chr4_2:54249848-54249867 Msa0607440:intron 35.0%
AACAACCTGAGTTTCCAATA+TGG + chr4_2:54249856-54249875 None:intergenic 35.0%
GATAACACTGCTGAATTTGA+CGG + chr4_2:54249979-54249998 None:intergenic 35.0%
! TCAAAACGATTGTAGGTTGA+AGG - chr4_2:54250036-54250055 Msa0607440:intron 35.0%
AATCTTCCTAGTCACATACA+TGG + chr4_2:54250132-54250151 None:intergenic 35.0%
! CACCCTTATCTTTTTATGTC+GGG - chr4_2:54250162-54250181 Msa0607440:intron 35.0%
GCTCATAGTTTACTGATAAG+TGG - chr4_2:54250197-54250216 Msa0607440:intron 35.0%
AGTTTACTGATAAGTGGGTA+TGG - chr4_2:54250203-54250222 Msa0607440:intron 35.0%
CTATATATCCAACTGCAGAA+TGG + chr4_2:54250320-54250339 None:intergenic 35.0%
CATTCTGCAGTTGGATATAT+AGG - chr4_2:54250318-54250337 Msa0607440:intron 35.0%
!! AGAACACTCAGATTTTAGCA+TGG + chr4_2:54250359-54250378 None:intergenic 35.0%
TTTCTGTGAAATAGTTGCTC+TGG + chr4_2:54250720-54250739 None:intergenic 35.0%
TTGAACTTGACTTACTTACC+AGG - chr4_2:54250814-54250833 Msa0607440:intron 35.0%
TATCAAAGTCCTAAGCAACA+AGG + chr4_2:54250844-54250863 None:intergenic 35.0%
!!! TTTTTGGTTATACAGTCCGA+AGG - chr4_2:54250925-54250944 Msa0607440:CDS 35.0%
AAGCATACGAAGAAAATTGG+AGG - chr4_2:54250976-54250995 Msa0607440:intron 35.0%
TATCAGTATCCAAGGATTTG+AGG + chr4_2:54251092-54251111 None:intergenic 35.0%
GCCTATTATATCAGTATCCA+AGG + chr4_2:54251100-54251119 None:intergenic 35.0%
ATCATCGAAATGTATAGGGT+GGG + chr4_2:54251319-54251338 None:intergenic 35.0%
TATCATCGAAATGTATAGGG+TGG + chr4_2:54251320-54251339 None:intergenic 35.0%
AGGGGCCAAAATAGTAAATA+AGG - chr4_2:54251407-54251426 Msa0607440:intron 35.0%
TGTATAATCCAACCCTAGAT+TGG - chr4_2:54251513-54251532 Msa0607440:intron 35.0%
ACTTCCAAAGTTCCAATCTA+GGG + chr4_2:54251528-54251547 None:intergenic 35.0%
TGAAATAGCATGTTGAGTGT+TGG + chr4_2:54251565-54251584 None:intergenic 35.0%
ATGATTGTAAGGAGATGCAA+TGG + chr4_2:54251600-54251619 None:intergenic 35.0%
! CAATCATTTTAGACCTTCCT+AGG - chr4_2:54251613-54251632 Msa0607440:intron 35.0%
ATTCATACTCGTGTTAACCT+AGG + chr4_2:54251633-54251652 None:intergenic 35.0%
! AACTACGTACATGTTTTCAC+AGG - chr4_2:54251658-54251677 Msa0607440:intron 35.0%
GCAAATAAATGTTGGATCCT+TGG + chr4_2:54251734-54251753 None:intergenic 35.0%
TATTTGCTCAATTAACTGGC+AGG - chr4_2:54251747-54251766 Msa0607440:intron 35.0%
!!! CAAGTTTTAATTGCGGAAAC+AGG - chr4_2:54251948-54251967 Msa0607440:intron 35.0%
CATCAGGCAAGGAAATATTT+AGG + chr4_2:54252010-54252029 None:intergenic 35.0%
! GTTTTCACTTCAATTCGCTT+TGG - chr4_2:54252162-54252181 Msa0607440:intron 35.0%
ATGTCACATTCAGTTTGCAT+AGG - chr4_2:54252339-54252358 Msa0607440:intron 35.0%
AAACTTCTATCGGCAATGTA+TGG + chr4_2:54252453-54252472 None:intergenic 35.0%
! ATACTAATCGTTGATGGAGA+TGG + chr4_2:54252599-54252618 None:intergenic 35.0%
!!! ACCTTGTTTTGAAGTGACTT+TGG - chr4_2:54252625-54252644 Msa0607440:intron 35.0%
TCCAAAGTCACTTCAAAACA+AGG + chr4_2:54252629-54252648 None:intergenic 35.0%
GGGCAATCACTTAAAAATGT+TGG + chr4_2:54252704-54252723 None:intergenic 35.0%
TGACAATCAACAAGAGTCAA+GGG + chr4_2:54252724-54252743 None:intergenic 35.0%
ATGACAATCAACAAGAGTCA+AGG + chr4_2:54252725-54252744 None:intergenic 35.0%
! TTGACTCTTGTTGATTGTCA+TGG - chr4_2:54252724-54252743 Msa0607440:intron 35.0%
TTGAAGAGAAGAGATAACCT+GGG - chr4_2:54252811-54252830 Msa0607440:intron 35.0%
AGGTTAACCATAACCAGAAT+GGG + chr4_2:54252898-54252917 None:intergenic 35.0%
AAGGTTAACCATAACCAGAA+TGG + chr4_2:54252899-54252918 None:intergenic 35.0%
TAGGATTATGCAATGGAACA+AGG + chr4_2:54252918-54252937 None:intergenic 35.0%
CTCAACACAATAAATGCTTC+AGG + chr4_2:54253012-54253031 None:intergenic 35.0%
TATCAGTCATACCATCCAAT+AGG - chr4_2:54253208-54253227 Msa0607440:intron 35.0%
ACTTATCCAAACCTATTGGA+TGG + chr4_2:54253222-54253241 None:intergenic 35.0%
TAGCACTTATCCAAACCTAT+TGG + chr4_2:54253226-54253245 None:intergenic 35.0%
TGGATAAGTGCTATCAACAA+TGG - chr4_2:54253233-54253252 Msa0607440:intron 35.0%
CTATGTATAAGTAATTCCGG+AGG - chr4_2:54253276-54253295 Msa0607440:intron 35.0%
GCAATTAGTACTTGTTTAGG+AGG - chr4_2:54253609-54253628 Msa0607440:intron 35.0%
GCTAGGCATTATAGCAAAAT+AGG - chr4_2:54253639-54253658 Msa0607440:intron 35.0%
AAATAGGGTGAATTAGGGTT+AGG - chr4_2:54253655-54253674 Msa0607440:intron 35.0%
ATGGAAAAATCCTAGGCATT+AGG - chr4_2:54253678-54253697 Msa0607440:intron 35.0%
TGGAAAAATCCTAGGCATTA+GGG - chr4_2:54253679-54253698 Msa0607440:intron 35.0%
ATTTAGGAGGGAAAAATGCT+AGG - chr4_2:54254092-54254111 Msa0607440:intron 35.0%
AGGGCAAAATATGGTGAATT+AGG - chr4_2:54254119-54254138 Msa0607440:intron 35.0%
GGGCAAAATATGGTGAATTA+GGG - chr4_2:54254120-54254139 Msa0607440:intron 35.0%
AGCATCTGTTGTTCGAAATA+CGG - chr4_2:54254203-54254222 Msa0607440:intron 35.0%
ACCGTTCGTCTACATAATAT+AGG + chr4_2:54254300-54254319 None:intergenic 35.0%
TTATGTAGACGAACGGTAAT+TGG - chr4_2:54254303-54254322 Msa0607440:CDS 35.0%
!! CAGTAAACTCTGAAATTTCC+AGG - chr4_2:54254395-54254414 Msa0607440:CDS 35.0%
CTTCATGGTAAAAAACAGTC+CGG + chr4_2:54254481-54254500 None:intergenic 35.0%
CTTGCAAATGTTATGCTTCA+TGG + chr4_2:54254496-54254515 None:intergenic 35.0%
AAGCAATCCATACTTAGAGT+GGG - chr4_2:54254572-54254591 Msa0607440:CDS 35.0%
ATCTGGTATAAATTAGGACG+AGG + chr4_2:54254741-54254760 None:intergenic 35.0%
! AGCGAAAAAGTACATGTATC+TGG + chr4_2:54254758-54254777 None:intergenic 35.0%
GTGAGCTCTATCAACTTATA+AGG - chr4_2:54254917-54254936 Msa0607440:intron 35.0%
!! GCATACTAAGTATTGAGAAG+TGG + chr4_2:54255207-54255226 None:intergenic 35.0%
AACATGAGGGAGATGGAAAA+TGG + chr4_2:54247095-54247114 None:intergenic 40.0%
TGTGTGAAGGAAGAACATGA+GGG + chr4_2:54247108-54247127 None:intergenic 40.0%
ATGTGTGAAGGAAGAACATG+AGG + chr4_2:54247109-54247128 None:intergenic 40.0%
TGCCATGAGTTTATGTGTGA+AGG + chr4_2:54247121-54247140 None:intergenic 40.0%
TCTTGGAAACATGAGGTACA+AGG + chr4_2:54247203-54247222 None:intergenic 40.0%
TCATGTTGTGTTCAGTGCAT+TGG + chr4_2:54247369-54247388 None:intergenic 40.0%
! CGACTTATAATTTGGGATGG+AGG - chr4_2:54247764-54247783 Msa0607440:CDS 40.0%
AGGTAGCATCCCTTACAAAT+AGG + chr4_2:54248025-54248044 None:intergenic 40.0%
GGATGCTACCTTTCAATGAA+TGG - chr4_2:54248034-54248053 Msa0607440:intron 40.0%
GGCTATGTACAGTCTCAAAA+TGG - chr4_2:54248147-54248166 Msa0607440:intron 40.0%
! TCTCCATTTTGTACCTCATC+TGG - chr4_2:54248193-54248212 Msa0607440:intron 40.0%
ATGCCAGATGAGGTACAAAA+TGG + chr4_2:54248199-54248218 None:intergenic 40.0%
CAATGCTAACCAAGTTTCCA+GGG + chr4_2:54248336-54248355 None:intergenic 40.0%
!! AGTCACAGCCATTTTCCTAT+TGG - chr4_2:54248386-54248405 Msa0607440:intron 40.0%
!! GTCACAGCCATTTTCCTATT+GGG - chr4_2:54248387-54248406 Msa0607440:intron 40.0%
!! AGCCATTTTCCTATTGGGAT+TGG - chr4_2:54248392-54248411 Msa0607440:intron 40.0%
GGGATTGGATATCTATAAGG+AGG - chr4_2:54248407-54248426 Msa0607440:intron 40.0%
AATAGTAGCTGTGGCATAGA+AGG + chr4_2:54248644-54248663 None:intergenic 40.0%
TGACACTACCTCACACATTT+AGG - chr4_2:54249079-54249098 Msa0607440:intron 40.0%
GACACTACCTCACACATTTA+GGG - chr4_2:54249080-54249099 Msa0607440:intron 40.0%
CTAGCCGAGAAAAAATTGAC+AGG - chr4_2:54249150-54249169 Msa0607440:intron 40.0%
GAGTTTAATGAGCTTGAAGG+AGG - chr4_2:54249175-54249194 Msa0607440:intron 40.0%
TGCTTACCACTACTATTGCT+TGG - chr4_2:54249203-54249222 Msa0607440:intron 40.0%
GCTTACCACTACTATTGCTT+GGG - chr4_2:54249204-54249223 Msa0607440:intron 40.0%
ACTGTTTGGGAGAGCTTAAT+TGG - chr4_2:54249354-54249373 Msa0607440:intron 40.0%
! CTTATTTCCACAAGCTCTGA+AGG - chr4_2:54249411-54249430 Msa0607440:intron 40.0%
TTAGATTATCAGGACTCAGG+AGG - chr4_2:54249561-54249580 Msa0607440:intron 40.0%
TGTAGTTACCTTGGTAAGTG+AGG + chr4_2:54249756-54249775 None:intergenic 40.0%
AGCATGAGATGTAGTTACCT+TGG + chr4_2:54249765-54249784 None:intergenic 40.0%
!! AACGTGGTTAGCTTGTCTAA+AGG - chr4_2:54249923-54249942 Msa0607440:intron 40.0%
!! GTTAGCTTGTCTAAAGGTAC+TGG - chr4_2:54249929-54249948 Msa0607440:intron 40.0%
! AAACGATTGTAGGTTGAAGG+TGG - chr4_2:54250039-54250058 Msa0607440:intron 40.0%
TAGGTGGCTGAAGGAAAAAT+TGG + chr4_2:54250074-54250093 None:intergenic 40.0%
ACTGTGTTTCCGATAAATGC+CGG + chr4_2:54250102-54250121 None:intergenic 40.0%
AGTATGCCATGTATGTGACT+AGG - chr4_2:54250123-54250142 Msa0607440:intron 40.0%
TGATAAGTGGGTATGGTTCA+GGG - chr4_2:54250210-54250229 Msa0607440:intron 40.0%
GTATTATGTAACCCTAGGCT+TGG - chr4_2:54250274-54250293 Msa0607440:intron 40.0%
ATAGGTTAGAACAACAACCC+TGG + chr4_2:54250417-54250436 None:intergenic 40.0%
CCAAAGCTTCACTAGTGATA+TGG + chr4_2:54250749-54250768 None:intergenic 40.0%
CCATATCACTAGTGAAGCTT+TGG - chr4_2:54250746-54250765 Msa0607440:CDS 40.0%
GTAAACTCAATGTCGTCCTT+CGG + chr4_2:54250944-54250963 None:intergenic 40.0%
ATAGGCATGCAATAGATGGA+AGG - chr4_2:54251114-54251133 Msa0607440:intron 40.0%
TCTAGGCAGATTCTCACTTA+GGG - chr4_2:54251388-54251407 Msa0607440:intron 40.0%
GACTTCCAAAGTTCCAATCT+AGG + chr4_2:54251529-54251548 None:intergenic 40.0%
ATACTCGTGTTAACCTAGGA+AGG + chr4_2:54251629-54251648 None:intergenic 40.0%
TTCACAGGTAGTCTGTGAAA+AGG - chr4_2:54251673-54251692 Msa0607440:intron 40.0%
GTTAAGAAACGAAGAGGATG+AGG - chr4_2:54251769-54251788 Msa0607440:intron 40.0%
!!! AGCGGCACAAGTTTTAATTG+CGG - chr4_2:54251941-54251960 Msa0607440:intron 40.0%
TTTCCTTGCCTGATGTTGAA+AGG - chr4_2:54252015-54252034 Msa0607440:intron 40.0%
CTAAACGTCCTTTCAACATC+AGG + chr4_2:54252026-54252045 None:intergenic 40.0%
!! TGTTCAGAAGTGTTTGATCG+AGG - chr4_2:54252211-54252230 Msa0607440:intron 40.0%
!! GTTCAGAAGTGTTTGATCGA+GGG - chr4_2:54252212-54252231 Msa0607440:intron 40.0%
AACTGACTATGCGAGAATAC+AGG - chr4_2:54252662-54252681 Msa0607440:intron 40.0%
GTTGAAGAGAAGAGATAACC+TGG - chr4_2:54252810-54252829 Msa0607440:intron 40.0%
! GCGAAAAAGTTTTCATACCC+AGG + chr4_2:54252831-54252850 None:intergenic 40.0%
CAATTTCCATTACGCGTCAA+TGG - chr4_2:54253066-54253085 Msa0607440:intron 40.0%
TGATCCACTATTGCGTTTGT+TGG - chr4_2:54253153-54253172 Msa0607440:intron 40.0%
GTCATACCATCCAATAGGTT+TGG - chr4_2:54253213-54253232 Msa0607440:intron 40.0%
TATATCGCTTCAGATTCCTC+CGG + chr4_2:54253295-54253314 None:intergenic 40.0%
GTTTAGGAGGGAAAAATGCT+AGG - chr4_2:54253622-54253641 Msa0607440:intron 40.0%
GGTTAGGATGGAAAAATCCT+AGG - chr4_2:54253671-54253690 Msa0607440:intron 40.0%
CTAGGCATTAGGGCAAAATA+GGG - chr4_2:54253689-54253708 Msa0607440:intron 40.0%
AGGGCAAAATAGGGTGAATT+AGG - chr4_2:54253698-54253717 Msa0607440:intron 40.0%
GGGCAAAATAGGGTGAATTA+GGG - chr4_2:54253699-54253718 Msa0607440:intron 40.0%
AGGGTGAATTAGGGAAAACA+TGG - chr4_2:54253708-54253727 Msa0607440:intron 40.0%
AGGGAAAAATGCTAGGCATT+AGG - chr4_2:54253629-54253648 Msa0607440:intron 40.0%
GGGAAAAATGCTAGGCATTA+GGG - chr4_2:54253630-54253649 Msa0607440:intron 40.0%
CTAGGCATTAGGGCAAAATA+TGG - chr4_2:54253689-54253708 Msa0607440:intron 40.0%
! AGTAGCGGAATCTCTGTTAA+CGG - chr4_2:54254335-54254354 Msa0607440:CDS 40.0%
CTAGGTGCTTTGATATATGC+TGG - chr4_2:54254531-54254550 Msa0607440:CDS 40.0%
GCTTTGATATATGCTGGAAC+AGG - chr4_2:54254537-54254556 Msa0607440:CDS 40.0%
ATATGCTGGAACAGGAATAG+TGG - chr4_2:54254545-54254564 Msa0607440:CDS 40.0%
GAAGCAATCCATACTTAGAG+TGG - chr4_2:54254571-54254590 Msa0607440:CDS 40.0%
GCTAGAACTCAAAACATCTC+AGG - chr4_2:54254599-54254618 Msa0607440:CDS 40.0%
GTTCACCAAGTTGCTTAAAC+TGG - chr4_2:54254874-54254893 Msa0607440:intron 40.0%
CAAGTCCAGTTTAAGCAACT+TGG + chr4_2:54254882-54254901 None:intergenic 40.0%
AGAAGTGGAGAATCGTCATT+CGG + chr4_2:54255192-54255211 None:intergenic 40.0%
ATAGACGTTGTGTAAGCACA+AGG + chr4_2:54255443-54255462 None:intergenic 40.0%
ATTCCAATTGATACGGAGCA+TGG - chr4_2:54255489-54255508 Msa0607440:CDS 40.0%
AATTGCAATTATGGAGAGGG+AGG - chr4_2:54255528-54255547 Msa0607440:exon 40.0%
GTGAGAAAGAAAGACAGTGG+TGG + chr4_2:54247019-54247038 None:intergenic 45.0%
AAGGAAGAACATGAGGGAGA+TGG + chr4_2:54247102-54247121 None:intergenic 45.0%
CGTTGTCTCTTGGAAACATG+AGG + chr4_2:54247210-54247229 None:intergenic 45.0%
CTGTTGTTGTCGTTGTCTCT+TGG + chr4_2:54247220-54247239 None:intergenic 45.0%
CATAACATACATGTTGGCGG+TGG + chr4_2:54247269-54247288 None:intergenic 45.0%
TGTTGTGTTCAGTGCATTGG+TGG + chr4_2:54247366-54247385 None:intergenic 45.0%
AAAACTTGATATCCGGCCCA+AGG + chr4_2:54247928-54247947 None:intergenic 45.0%
AACTCTCACTATGCCAGATG+AGG + chr4_2:54248209-54248228 None:intergenic 45.0%
ATCTGGCATAGTGAGAGTTG+AGG - chr4_2:54248210-54248229 Msa0607440:intron 45.0%
GAGAGTTGAGGTTCCTATTG+AGG - chr4_2:54248222-54248241 Msa0607440:intron 45.0%
! GCTTCAACTTGCTCCTCAAT+AGG + chr4_2:54248238-54248257 None:intergenic 45.0%
AGTAGCATCTAGGAAGCAGA+AGG + chr4_2:54248288-54248307 None:intergenic 45.0%
! CTTCCTAGATGCTACTTCTC+TGG - chr4_2:54248292-54248311 Msa0607440:intron 45.0%
TTGCCAGAGAAGTAGCATCT+AGG + chr4_2:54248298-54248317 None:intergenic 45.0%
! TAGATGCTACTTCTCTGGCA+AGG - chr4_2:54248297-54248316 Msa0607440:intron 45.0%
AAGGAACAGAAATCTTGCCC+TGG - chr4_2:54248316-54248335 Msa0607440:intron 45.0%
GAAATCTTGCCCTGGAAACT+TGG - chr4_2:54248324-54248343 Msa0607440:intron 45.0%
GCAATGCTAACCAAGTTTCC+AGG + chr4_2:54248337-54248356 None:intergenic 45.0%
GGAAACTTGGTTAGCATTGC+TGG - chr4_2:54248337-54248356 Msa0607440:intron 45.0%
TTGGTTAGCATTGCTGGTGT+TGG - chr4_2:54248343-54248362 Msa0607440:intron 45.0%
TGACTGCGAAAAGGAAACAG+CGG + chr4_2:54248371-54248390 None:intergenic 45.0%
AAATGGCTGTGACTGCGAAA+AGG + chr4_2:54248380-54248399 None:intergenic 45.0%
CTCCATATGCGCGAATCAAA+GGG + chr4_2:54248721-54248740 None:intergenic 45.0%
! TCATCAGAGTGGATGGCTTT+TGG - chr4_2:54248770-54248789 Msa0607440:intron 45.0%
! TGTGTGAGGTAGTGTCACTA+TGG + chr4_2:54249076-54249095 None:intergenic 45.0%
GTTTGGTCCCTAAATGTGTG+AGG + chr4_2:54249090-54249109 None:intergenic 45.0%
TCTTTGTTGGTCGTGGGAAA+AGG - chr4_2:54249234-54249253 Msa0607440:intron 45.0%
AGTAAGTGTTAGGGCCTGTT+TGG - chr4_2:54249288-54249307 Msa0607440:intron 45.0%
AAGCTATCCTTCAGAGCTTG+TGG + chr4_2:54249421-54249440 None:intergenic 45.0%
! AATGTTGGAGGAGCTTGCTT+AGG + chr4_2:54249647-54249666 None:intergenic 45.0%
! AAACTCAGGTTGTTCTAGCG+CGG - chr4_2:54249862-54249881 Msa0607440:intron 45.0%
AGACAAGCTAACCACGTTAG+AGG + chr4_2:54249921-54249940 None:intergenic 45.0%
ATAAATGCCGGTGCATTAGG+TGG + chr4_2:54250090-54250109 None:intergenic 45.0%
! CCTAATGCACCGGCATTTAT+CGG - chr4_2:54250090-54250109 Msa0607440:intron 45.0%
CTGATAAGTGGGTATGGTTC+AGG - chr4_2:54250209-54250228 Msa0607440:intron 45.0%
GATAAGTGGGTATGGTTCAG+GGG - chr4_2:54250211-54250230 Msa0607440:intron 45.0%
ATAAGTGGGTATGGTTCAGG+GGG - chr4_2:54250212-54250231 Msa0607440:intron 45.0%
TACTGCAACCATTCTGCAGT+TGG - chr4_2:54250309-54250328 Msa0607440:intron 45.0%
! ATCACTAGTGAAGCTTTGGC+CGG - chr4_2:54250750-54250769 Msa0607440:CDS 45.0%
CCTAAGCAACAAGGTAAACC+TGG + chr4_2:54250835-54250854 None:intergenic 45.0%
! CCAGGTTTACCTTGTTGCTT+AGG - chr4_2:54250832-54250851 Msa0607440:intron 45.0%
TCGATGATGTGACACTGTCT+AGG - chr4_2:54251371-54251390 Msa0607440:intron 45.0%
GTCTAGGCAGATTCTCACTT+AGG - chr4_2:54251387-54251406 Msa0607440:intron 45.0%
CTAGGCAGATTCTCACTTAG+GGG - chr4_2:54251389-54251408 Msa0607440:intron 45.0%
! CCAAAGTTCCAATCTAGGGT+TGG + chr4_2:54251524-54251543 None:intergenic 45.0%
CCAACCCTAGATTGGAACTT+TGG - chr4_2:54251521-54251540 Msa0607440:intron 45.0%
TGGCAGGTTAAGAAACGAAG+AGG - chr4_2:54251763-54251782 Msa0607440:intron 45.0%
TTGTGGGTTTCCAACAGAAG+CGG - chr4_2:54251923-54251942 Msa0607440:CDS 45.0%
!! AAAACTTGTGCCGCTTCTGT+TGG + chr4_2:54251936-54251955 None:intergenic 45.0%
TTTGATCGAGGGATGTATGC+TGG - chr4_2:54252223-54252242 Msa0607440:intron 45.0%
CTATGCGAGAATACAGGACT+CGG - chr4_2:54252668-54252687 Msa0607440:intron 45.0%
!! TGTTGAGAAACTCTGGAGTG+TGG - chr4_2:54253025-54253044 Msa0607440:CDS 45.0%
GATACTCCATTGACGCGTAA+TGG + chr4_2:54253075-54253094 None:intergenic 45.0%
TGCTCCAACAAACGCAATAG+TGG + chr4_2:54253160-54253179 None:intergenic 45.0%
AGGGTGAATTAGGGTTAGGA+TGG - chr4_2:54253659-54253678 Msa0607440:intron 45.0%
! CCTATTTTGCCCTAATGCCT+AGG + chr4_2:54253691-54253710 None:intergenic 45.0%
CCTAGGCATTAGGGCAAAAT+AGG - chr4_2:54253688-54253707 Msa0607440:intron 45.0%
AGCTCATCCCACTCTAAGTA+TGG + chr4_2:54254582-54254601 None:intergenic 45.0%
!!! GAGCTCACTTTTTGTCTCAG+AGG + chr4_2:54254905-54254924 None:intergenic 45.0%
ATGCCATGCTCCGTATCAAT+TGG + chr4_2:54255495-54255514 None:intergenic 45.0%
TTATGGAGAGGGAGGAGATT+TGG - chr4_2:54255536-54255555 Msa0607440:exon 45.0%
!!! TATTTTATTTTTTTTCATTT+TGG - chr4_2:54247394-54247413 Msa0607440:intron 5.0%
!!! TTAAAGAAAAATTATATTTT+TGG + chr4_2:54255350-54255369 None:intergenic 5.0%
! TGTGTTCAGTGCATTGGTGG+TGG + chr4_2:54247363-54247382 None:intergenic 50.0%
CAAAGCTTGAGTCGGTCCTT+GGG - chr4_2:54247909-54247928 Msa0607440:intron 50.0%
CGCGTTTCTATCGTCCTAAC+TGG + chr4_2:54248097-54248116 None:intergenic 50.0%
ATTGCAGCTGATGCTACTGG+TGG + chr4_2:54248127-54248146 None:intergenic 50.0%
ACCAGTAGCATCAGCTGCAA+TGG - chr4_2:54248126-54248145 Msa0607440:intron 50.0%
AGCATCTAGGAAGCAGAAGG+TGG + chr4_2:54248285-54248304 None:intergenic 50.0%
TAGCTGTGGCATAGAAGGCA+GGG + chr4_2:54248639-54248658 None:intergenic 50.0%
! TGCCCTTTGATTCGCGCATA+TGG - chr4_2:54248716-54248735 Msa0607440:intron 50.0%
CCTCCATATGCGCGAATCAA+AGG + chr4_2:54248722-54248741 None:intergenic 50.0%
! CCTTTGATTCGCGCATATGG+AGG - chr4_2:54248719-54248738 Msa0607440:intron 50.0%
!! TGTTTCTTGAAGTGCCGCGA+TGG + chr4_2:54249260-54249279 None:intergenic 50.0%
CCGATAAATGCCGGTGCATT+AGG + chr4_2:54250093-54250112 None:intergenic 50.0%
TTATGTCGGGTATGGGCGTA+TGG - chr4_2:54250175-54250194 Msa0607440:intron 50.0%
TAGTGATGGTCCTCTAGCAC+GGG + chr4_2:54250778-54250797 None:intergenic 50.0%
CTAGTGATGGTCCTCTAGCA+CGG + chr4_2:54250779-54250798 None:intergenic 50.0%
TGACGGTCTAGTGCTAGTGA+TGG + chr4_2:54250792-54250811 None:intergenic 50.0%
AACTGCAGGACTTGGGTGAA+GGG + chr4_2:54251904-54251923 None:intergenic 50.0%
AAACTGCAGGACTTGGGTGA+AGG + chr4_2:54251905-54251924 None:intergenic 50.0%
ACCCAAGTCCTGCAGTTTGT+GGG - chr4_2:54251907-54251926 Msa0607440:CDS 50.0%
ACCCACAAACTGCAGGACTT+GGG + chr4_2:54251911-54251930 None:intergenic 50.0%
AACCCACAAACTGCAGGACT+TGG + chr4_2:54251912-54251931 None:intergenic 50.0%
GTTGGAAACCCACAAACTGC+AGG + chr4_2:54251918-54251937 None:intergenic 50.0%
CGTCCTTTCAACATCAGGCA+AGG + chr4_2:54252021-54252040 None:intergenic 50.0%
TGTATGCTGGACCTGTTGGT+TGG - chr4_2:54252236-54252255 Msa0607440:intron 50.0%
CAATGCTGACCTGATGCCAA+CGG + chr4_2:54252287-54252306 None:intergenic 50.0%
! GCTGGAACAGGAATAGTGGA+AGG - chr4_2:54254549-54254568 Msa0607440:CDS 50.0%
TGTGAGCCACTTGTGCGTAG+TGG + chr4_2:54247151-54247170 None:intergenic 55.0%
! CCAAGGACCGACTCAAGCTT+TGG + chr4_2:54247911-54247930 None:intergenic 55.0%
CCAAAGCTTGAGTCGGTCCT+TGG - chr4_2:54247908-54247927 Msa0607440:intron 55.0%
GCCATTGCAGCTGATGCTAC+TGG + chr4_2:54248130-54248149 None:intergenic 55.0%
TAGAAGGCAGGGTGCAGAAG+AGG + chr4_2:54248628-54248647 None:intergenic 55.0%
GTAGCTGTGGCATAGAAGGC+AGG + chr4_2:54248640-54248659 None:intergenic 55.0%
GAACACAGGGTATGCACCTG+AGG + chr4_2:54248815-54248834 None:intergenic 55.0%
CCTTCAGCCACCTAATGCAC+CGG - chr4_2:54250080-54250099 Msa0607440:intron 55.0%
CACCCAAGTCCTGCAGTTTG+TGG - chr4_2:54251906-54251925 Msa0607440:CDS 55.0%
GGGATGTATGCTGGACCTGT+TGG - chr4_2:54252232-54252251 Msa0607440:intron 55.0%
! GCTGGACCTGTTGGTTGGTT+TGG - chr4_2:54252241-54252260 Msa0607440:intron 55.0%
!! GGACCTGTTGGTTGGTTTGG+AGG - chr4_2:54252244-54252263 Msa0607440:intron 55.0%
CCTCCTCCAAACCAACCAAC+AGG + chr4_2:54252250-54252269 None:intergenic 55.0%
!! CCTGTTGGTTGGTTTGGAGG+AGG - chr4_2:54252247-54252266 Msa0607440:intron 55.0%
GGAGAGAGTGAGTTTGCCGT+TGG - chr4_2:54252268-54252287 Msa0607440:intron 55.0%
GTGAGTTTGCCGTTGGCATC+AGG - chr4_2:54252275-54252294 Msa0607440:intron 55.0%
CGTTGGCATCAGGTCAGCAT+TGG - chr4_2:54252285-54252304 Msa0607440:intron 55.0%
! TGGCATCAGGTCAGCATTGG+TGG - chr4_2:54252288-54252307 Msa0607440:intron 55.0%
!! CAGGTCAGCATTGGTGGAAC+AGG - chr4_2:54252294-54252313 Msa0607440:intron 55.0%
CAACCGCCACTACGCACAAG+TGG - chr4_2:54247142-54247161 Msa0607440:three_prime_UTR 60.0%
GAGCCACTTGTGCGTAGTGG+CGG + chr4_2:54247148-54247167 None:intergenic 60.0%
GTCGTGGGAAAAGGCCATCG+CGG - chr4_2:54249243-54249262 Msa0607440:intron 60.0%
CCGGTGCATTAGGTGGCTGA+AGG + chr4_2:54250083-54250102 None:intergenic 60.0%
TGGTCCTCTAGCACGGGTTC+CGG + chr4_2:54250772-54250791 None:intergenic 60.0%
CAATGACCCGTGCTACCGCA+CGG - chr4_2:54252383-54252402 Msa0607440:intron 60.0%
AATGACCCGTGCTACCGCAC+GGG - chr4_2:54252384-54252403 Msa0607440:intron 60.0%
GCTTGAGTCGGTCCTTGGGC+CGG - chr4_2:54247913-54247932 Msa0607440:intron 65.0%
TTGGCCGGAACCCGTGCTAG+AGG - chr4_2:54250765-54250784 Msa0607440:CDS 65.0%
CGTGCGGTAGCACGGGTCAT+TGG + chr4_2:54252385-54252404 None:intergenic 65.0%
TAGGACCCGTGCGGTAGCAC+GGG + chr4_2:54252392-54252411 None:intergenic 65.0%
GTAGGACCCGTGCGGTAGCA+CGG + chr4_2:54252393-54252412 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 54246918 54255754 54246918 ID=Msa0607440;Name=Msa0607440
chr4_2 mRNA 54246918 54255754 54246918 ID=Msa0607440-mRNA-1;Parent=Msa0607440;Name=Msa0607440-mRNA-1;_AED=0.14;_eAED=0.14;_QI=217|0.92|0.92|1|0.84|0.92|14|328|512
chr4_2 exon 54246918 54247244 54246918 ID=Msa0607440-mRNA-1:exon:13567;Parent=Msa0607440-mRNA-1
chr4_2 exon 54247734 54247797 54247734 ID=Msa0607440-mRNA-1:exon:13566;Parent=Msa0607440-mRNA-1
chr4_2 exon 54248052 54248144 54248052 ID=Msa0607440-mRNA-1:exon:13565;Parent=Msa0607440-mRNA-1
chr4_2 exon 54250357 54250454 54250357 ID=Msa0607440-mRNA-1:exon:13564;Parent=Msa0607440-mRNA-1
chr4_2 exon 54250703 54250787 54250703 ID=Msa0607440-mRNA-1:exon:13563;Parent=Msa0607440-mRNA-1
chr4_2 exon 54250882 54250992 54250882 ID=Msa0607440-mRNA-1:exon:13562;Parent=Msa0607440-mRNA-1
chr4_2 exon 54251675 54251732 54251675 ID=Msa0607440-mRNA-1:exon:13561;Parent=Msa0607440-mRNA-1
chr4_2 exon 54251837 54251955 54251837 ID=Msa0607440-mRNA-1:exon:13560;Parent=Msa0607440-mRNA-1
chr4_2 exon 54252553 54252621 54252553 ID=Msa0607440-mRNA-1:exon:13559;Parent=Msa0607440-mRNA-1
chr4_2 exon 54252728 54252802 54252728 ID=Msa0607440-mRNA-1:exon:13558;Parent=Msa0607440-mRNA-1
chr4_2 exon 54252906 54253052 54252906 ID=Msa0607440-mRNA-1:exon:13557;Parent=Msa0607440-mRNA-1
chr4_2 exon 54253906 54253972 54253906 ID=Msa0607440-mRNA-1:exon:13556;Parent=Msa0607440-mRNA-1
chr4_2 exon 54254244 54254653 54254244 ID=Msa0607440-mRNA-1:exon:13555;Parent=Msa0607440-mRNA-1
chr4_2 exon 54255394 54255754 54255394 ID=Msa0607440-mRNA-1:exon:13554;Parent=Msa0607440-mRNA-1
chr4_2 five_prime_UTR 54255538 54255754 54255538 ID=Msa0607440-mRNA-1:five_prime_utr;Parent=Msa0607440-mRNA-1
chr4_2 CDS 54255394 54255537 54255394 ID=Msa0607440-mRNA-1:cds;Parent=Msa0607440-mRNA-1
chr4_2 CDS 54254244 54254653 54254244 ID=Msa0607440-mRNA-1:cds;Parent=Msa0607440-mRNA-1
chr4_2 CDS 54253906 54253972 54253906 ID=Msa0607440-mRNA-1:cds;Parent=Msa0607440-mRNA-1
chr4_2 CDS 54252906 54253052 54252906 ID=Msa0607440-mRNA-1:cds;Parent=Msa0607440-mRNA-1
chr4_2 CDS 54252728 54252802 54252728 ID=Msa0607440-mRNA-1:cds;Parent=Msa0607440-mRNA-1
chr4_2 CDS 54252553 54252621 54252553 ID=Msa0607440-mRNA-1:cds;Parent=Msa0607440-mRNA-1
chr4_2 CDS 54251837 54251955 54251837 ID=Msa0607440-mRNA-1:cds;Parent=Msa0607440-mRNA-1
chr4_2 CDS 54251675 54251732 54251675 ID=Msa0607440-mRNA-1:cds;Parent=Msa0607440-mRNA-1
chr4_2 CDS 54250882 54250992 54250882 ID=Msa0607440-mRNA-1:cds;Parent=Msa0607440-mRNA-1
chr4_2 CDS 54250703 54250787 54250703 ID=Msa0607440-mRNA-1:cds;Parent=Msa0607440-mRNA-1
chr4_2 CDS 54250357 54250454 54250357 ID=Msa0607440-mRNA-1:cds;Parent=Msa0607440-mRNA-1
chr4_2 CDS 54248052 54248144 54248052 ID=Msa0607440-mRNA-1:cds;Parent=Msa0607440-mRNA-1
chr4_2 CDS 54247735 54247797 54247735 ID=Msa0607440-mRNA-1:cds;Parent=Msa0607440-mRNA-1
chr4_2 three_prime_UTR 54247734 54247734 54247734 ID=Msa0607440-mRNA-1:three_prime_utr;Parent=Msa0607440-mRNA-1
chr4_2 three_prime_UTR 54246918 54247244 54246918 ID=Msa0607440-mRNA-1:three_prime_utr;Parent=Msa0607440-mRNA-1
Gene Sequence

>Msa0607440

ATGGCAACAACCGCCACTACGCACAAGTGGCTCACACACTTTATCAACACAAATGGCTGCAATATCCTTGTACCTCATGTTTCCAAGAGACAACGACAACAACAGCATCATCAACAATCTATGTATCTTATCCACCGCCAACATAGACCTATTTGTAAGGGATGCTACCTTTCAATGAATGGTTGTAAAGAAGGAGAAATAAATAAAAGTTCAAGAGAACCAGTTAGGACGATAGAAACGCGAACATTGCCACCAGTAGCATCAGCTGCAATGGCTATGTACAGTCTCAAAATGGCTATTTCAGAGCTAAAAGAAATCTCTCCATTTTGTACCTCATCTGGCATAGTGAGAGTTGAGGTTCCTATTGAGGAGCAAGTTGAAGCAATTGATTGGCTTCATTCACAAAACCACCTTCTGCTTCCTAGATGCTACTTCTCTGGCAAGGAACAGAAATCTTGCCCTGGAAACTTGGTTAGCATTGCTGGTGTTGGTTCCGCTGTTTCCTTTTCGCAGTCACAGCCATTTTCCTATTGGGATTGGATATCTATAAGGAGGTTTCTTTCTGAGAGCTGCCCTTTGATTCGCGCATATGGAGGTATCCGTTTCAATGCAAAAGCTAATGTTTCTACTTCCATTGTAAAGTTTCCTAAGCAAGCTCCTCCAACATTGATATTAAGCAGCCATAACATTCCTAGTAAAGAAGATTGGAATCTTGCTGTTAATAGAGCTTTGCAGATGATAGAGCAAAATGATTCCTCACTTACCAAGGTTGTTCTAGCGCGGAGCACTAGAGTAGTGCCTACTGTAAATATCAATCCTCTAACGTGGTTAGCTTGTCTAAAGGTTGAAGGTGGAAATGCTTACCAATTTTTCCTTCAGCCACCTAATGCACCGGCATTTATCGGAAACACACCAGAGCAACTATTTCACAGAAAATGGCTCCATATCACTAGTGAAGCTTTGGCCGGAACCCGTGCTAGAGGACCATCACTAGCACTAGACCGTCAAATTGAACTTGACTTACTTACCAGTCCGAAGGACGACATTGAGTTTACTATAGTAAGAGAAAGCATACGAAGAAAATTGGAGGTAGTCTGTGAAAAGGTTATAATCGAGCCAAAGAAAATGATCAGAAAACTACCAAGGATCCAACATTTATTTGCTCAATTAACTGGCAGGTTAAGAAACGAAGAGGATGAGTTTGAAATTTTGTCGTCCCTTCACCCAAGTCCTGCAGTTTGTGGGTTTCCAACAGAAGCGGCACAAGTTTTAATTGCGGAAACAGAAGTGTTTGATCGAGGGATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAGGAGAGAGTGAGTTTGCCGTTGGCATCAGGTCAGCATTGGTGGAACAGGATCTAGGTGCTTTGATATATGCTGGAACAGGAATAGTGGAAGGAAGCAATCCATACTTAGAGTGGGATGAGCTAGAACTCAAAACATCTCAGTTCACCAAGTTGCTTAAACTGGACTTGCCTCTGAGACAAAAAGTGAGCTCTATCAACTTATAA

Protein sequence

>Msa0607440

MATTATTHKWLTHFINTNGCNILVPHVSKRQRQQQHHQQSMYLIHRQHRPICKGCYLSMNGCKEGEINKSSREPVRTIETRTLPPVASAAMAMYSLKMAISELKEISPFCTSSGIVRVEVPIEEQVEAIDWLHSQNHLLLPRCYFSGKEQKSCPGNLVSIAGVGSAVSFSQSQPFSYWDWISIRRFLSESCPLIRAYGGIRFNAKANVSTSIVKFPKQAPPTLILSSHNIPSKEDWNLAVNRALQMIEQNDSSLTKVVLARSTRVVPTVNINPLTWLACLKVEGGNAYQFFLQPPNAPAFIGNTPEQLFHRKWLHITSEALAGTRARGPSLALDRQIELDLLTSPKDDIEFTIVRESIRRKLEVVCEKVIIEPKKMIRKLPRIQHLFAQLTGRLRNEEDEFEILSSLHPSPAVCGFPTEAAQVLIAETEVFDRGMYAGPVGWFGGGESEFAVGIRSALVEQDLGALIYAGTGIVEGSNPYLEWDELELKTSQFTKLLKLDLPLRQKVSSINL*