AlfalfaGEDB | Msa0164630

M. sativa cultivar zhongmu-4 / Msa0164630

KEGG: K00972
GO: -
PFAM: PF01782.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164630	XP_003629892.2	95.173	663	20	4	1	657	1	657	0.0	1276

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164630	sp\|A5GI62\|RIMM_SYNPW	40.206	194	92	5	67	260	6	175	3.09e-39	145

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164630	G7L811	95.173	663	20	4	1	657	1	657	0.0	1276

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0164630	0.833134	6.350057e-56	-8.615850e-47
Msa0000220	Msa0164630	0.876429	1.406688e-68	-8.615850e-47
Msa0000500	Msa0164630	0.819155	1.347374e-52	-8.615850e-47
Msa0001040	Msa0164630	0.809093	2.243482e-50	-8.615850e-47
Msa0001460	Msa0164630	0.817409	3.348247e-52	-8.615850e-47
Msa0004340	Msa0164630	0.845957	2.935595e-59	-8.615850e-47
Msa0005160	Msa0164630	0.826584	2.503470e-54	-8.615850e-47
Msa0005690	Msa0164630	0.866628	2.480543e-65	-8.615850e-47
Msa0006050	Msa0164630	0.830767	2.439220e-55	-8.615850e-47
Msa0006700	Msa0164630	0.833842	4.228515e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164630	MtrunA17_Chr8g0380151	95.173	663	20	4	1	657	1	657	0.0	1276

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164630	AT5G46420.1	46.177	667	314	11	8	655	11	651	0.0	575

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Find 141 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGCCTCCAAGCGAAGT+AGG	0.535540	1_4:+44145361	None:intergenic
AAATGCATGTCCGTTGGATA+AGG	0.395274	1_4:-44138826	Msa0164630:CDS
AAATTCACTACTTGTTGGGT+TGG	0.511864	1_4:-44139093	Msa0164630:CDS
AAATTGAGCTTGAAGAAGGT+AGG	0.587798	1_4:-44145072	Msa0164630:CDS
AACAACAACAGGTTCGCGGT+GGG	0.657439	1_4:+44145264	None:intergenic
AACACTCTGGACAAAATTGT+TGG	0.474118	1_4:-44145048	Msa0164630:CDS
AACTCCAAAAGTCCCTTGGG+CGG	0.640296	1_4:+44143213	None:intergenic
AACTGGAAGTAAAACCAAGT+TGG	0.577834	1_4:-44141649	Msa0164630:CDS
AAGATAGCTCGTATGAGTTT+GGG	0.348468	1_4:+44138868	None:intergenic
AAGTGCCTCCAAGCGAAGTA+GGG	0.549319	1_4:+44145362	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGGAGAAAAAGGTTTGAAA+CGG	+	chr1_4:44138789-44138808	None:intergenic	30.0%
TTGACTATATTACAAGCAAG+TGG	+	chr1_4:44139200-44139219	None:intergenic	30.0%
GTTGAAAAATACCTTATGGA+TGG	-	chr1_4:44139260-44139279	Msa0164630:intron	30.0%
TCAAAGTAGTCAATACAAAC+TGG	-	chr1_4:44139350-44139369	Msa0164630:intron	30.0%
CAAAGTAGTCAATACAAACT+GGG	-	chr1_4:44139351-44139370	Msa0164630:intron	30.0%
ATATGGGGAAAACCAAAAAA+GGG	+	chr1_4:44139711-44139730	None:intergenic	30.0%
AATATGGGGAAAACCAAAAA+AGG	+	chr1_4:44139712-44139731	None:intergenic	30.0%
GAGCTATTCATTATGATTTC+AGG	+	chr1_4:44139742-44139761	None:intergenic	30.0%
ATACGTTAATTCGAGAAAGA+GGG	-	chr1_4:44139804-44139823	Msa0164630:intron	30.0%
TCATATGATCAAACAGACAA+TGG	+	chr1_4:44140012-44140031	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	44138642	44145501	44138642	ID=Msa0164630;Name=Msa0164630
chr1_4	mRNA	44138642	44145501	44138642	ID=Msa0164630-mRNA-1;Parent=Msa0164630;Name=Msa0164630-mRNA-1;_AED=0.02;_eAED=0.02;_QI=61\|1\|1\|1\|1\|1\|8\|158\|657
chr1_4	exon	44138642	44139147	44138642	ID=Msa0164630-mRNA-1:exon:12694;Parent=Msa0164630-mRNA-1
chr1_4	exon	44139880	44140071	44139880	ID=Msa0164630-mRNA-1:exon:12693;Parent=Msa0164630-mRNA-1
chr1_4	exon	44140926	44141036	44140926	ID=Msa0164630-mRNA-1:exon:12692;Parent=Msa0164630-mRNA-1
chr1_4	exon	44141452	44141749	44141452	ID=Msa0164630-mRNA-1:exon:12691;Parent=Msa0164630-mRNA-1
chr1_4	exon	44142399	44142598	44142399	ID=Msa0164630-mRNA-1:exon:12690;Parent=Msa0164630-mRNA-1
chr1_4	exon	44143167	44143451	44143167	ID=Msa0164630-mRNA-1:exon:12689;Parent=Msa0164630-mRNA-1
chr1_4	exon	44143954	44144064	44143954	ID=Msa0164630-mRNA-1:exon:12688;Parent=Msa0164630-mRNA-1
chr1_4	exon	44145012	44145501	44145012	ID=Msa0164630-mRNA-1:exon:12687;Parent=Msa0164630-mRNA-1
chr1_4	five_prime_UTR	44145441	44145501	44145441	ID=Msa0164630-mRNA-1:five_prime_utr;Parent=Msa0164630-mRNA-1
chr1_4	CDS	44145012	44145440	44145012	ID=Msa0164630-mRNA-1:cds;Parent=Msa0164630-mRNA-1
chr1_4	CDS	44143954	44144064	44143954	ID=Msa0164630-mRNA-1:cds;Parent=Msa0164630-mRNA-1
chr1_4	CDS	44143167	44143451	44143167	ID=Msa0164630-mRNA-1:cds;Parent=Msa0164630-mRNA-1
chr1_4	CDS	44142399	44142598	44142399	ID=Msa0164630-mRNA-1:cds;Parent=Msa0164630-mRNA-1
chr1_4	CDS	44141452	44141749	44141452	ID=Msa0164630-mRNA-1:cds;Parent=Msa0164630-mRNA-1
chr1_4	CDS	44140926	44141036	44140926	ID=Msa0164630-mRNA-1:cds;Parent=Msa0164630-mRNA-1
chr1_4	CDS	44139880	44140071	44139880	ID=Msa0164630-mRNA-1:cds;Parent=Msa0164630-mRNA-1
chr1_4	CDS	44138800	44139147	44138800	ID=Msa0164630-mRNA-1:cds;Parent=Msa0164630-mRNA-1
chr1_4	three_prime_UTR	44138642	44138799	44138642	ID=Msa0164630-mRNA-1:three_prime_utr;Parent=Msa0164630-mRNA-1

Gene Sequence

>Msa0164630

ATGCAGATACCAAACACTTTCACAACAATCTCTCAACGCCCATTTCTCACTCTTATCCCTACTTCGCTTGGAGGCACTTTCCACCGTTTCAAACCTTTTTCTCCAACCAAACACTTCCCTATTCATTTCCACCCCCTTAAAGCAGCTACAACTACCCACCGCGAACCTGTTGTTGTTGTTGTTGACAATGAACCGCGATTCGTTGATATTGGTTATGTATCCGGTGTTCACGGTTTTCAAGGCGATGTTCGTGTTAAGCCTAACACTGATTTTCCTGAACTCAGATTTTCCACGCCTGGGAGAAGATGGTTGAAGCAGATGGTTATGGGTGGAGAAAGCGTTCAGGAAATTGAGCTTGAAGAAGGTAGGGAACACTCTGGACAAAATTGTTGGATACTCAAATTCACAGGAATTGATTCTGCGGAGGAGGCTAAGATGCTTATTGGTGCTACCTTGCTTGTGACGGAAGAAGACAAGCCTGAACTCGAAGAGGGTGAATTTTACACACATGATCTCAATGGGATGCGAGTTTTTATGAAGGAAAATGGAAAACTTTTGGGAACAGTTATTAATGTTTTCAACAATGGAGCAAATGATCTACTTCAAATTTCACTTGATTCATCCTTTGATGTGCTTGATAAAAATGGCAAGCCAAAGCCAGAAGAAATAGAAGCATCTGGTCAGCTTGTTTTGGTACCTTTTGTTGAAGCAATTGTTCCAGATGTTGATATGAATAGAAGAGAAATGCATATTACTCCGCCCAAGGGACTTTTGGAGTTAAACTTACGATTTGATGATAGGTCCAAAAAAGAAAGACGCCAACTTGAATGGAAAGAAAGGAAAAAGTTCCAAAAGCGTCTCATAGCAGCAAAAAAGAAACTCTGTGAAATGGATCAACAACATGTCTTTCATGGATTTCAATGCGGAGAGAAAGAACAATGGAGCTTGCTTAGCGATCAGATTGTTGGTGTAAACTCCAGATTACTTCAGGATGCCTTACAAAGTCTTGAACAACCAGCCAACAGATGGAATGCAGCTGAGTTGGTCAGTGCCATGGAAGAAAAGCGTATACGTACTGTACAAATATCTGAAAAGTCTCTCCTAACTGGAAGTAAAACCAAGTTGGTTAGGAATATCATCAATATGAAAGAGAAGGGAGTTGAGCTAATTTCTAATGGCAAAATGGCTATTGTCTTGCTATTGAAAGAAAAAGAGAATGAAGGATGCATTTATGATCCTGAAGTTGTTGAAAATGAAGCAACTGAAACTTCAACACTACGCATGCTTCAAAACTTACTCTCTGATCATGAAAAGTTTGTAAAGGTTAACGATCGTGTATCTGTTCCTTTAATTTTGGTTTCCTCGGCCCAACAAATCCAGTCTTTAAGAAATCTCTTTACAAGGAACAATCACTTCGCGTTCGACTCTGAAAAGGTATGGTTTTTGGAAGAAGAGAAGCTTCCAGTTGTCAGCAGTTCACTAGAAGGACAAAACAAATACAAGATTTTAATGAAGTCGCCTTGGGAAATACTCCAATCTCCTGTTGGATCAGGAGGATTTATTAGCTTGTTTTCAAAACATGGCATTACAGATAATCTGATTAACATGGGTGTTGAGTACCTTGAGTTATGTTGTCCATGTGAAAGAAGTGTTGGTGGAAATTCACTACTTGTTGGGTTGGTTGATTCGCGGGAAGCCAAAATTGGGATACAGATTACATCTACAATAGCTGATCCAGATGAAAATTTGGACATGATATTGTCGATGGAATTTGTAAAGAAGCTAACGAAGCAGAGCTACAAACTTCGATTTGATGCAACCGCCAAGACAAATTCCTTTATTGAGAGTGTTGATAAAGACTGGGTTACCGTTACCTCGTCCACCCCAAACTCATACGAGCTATCTTGTAGTGTATATAGTTCCTTAAATGCATGTCCGTTGGATAAGGTTTGTATAGTAGAGGTTAGAGAATAA

Protein sequence

>Msa0164630

MQIPNTFTTISQRPFLTLIPTSLGGTFHRFKPFSPTKHFPIHFHPLKAATTTHREPVVVVVDNEPRFVDIGYVSGVHGFQGDVRVKPNTDFPELRFSTPGRRWLKQMVMGGESVQEIELEEGREHSGQNCWILKFTGIDSAEEAKMLIGATLLVTEEDKPELEEGEFYTHDLNGMRVFMKENGKLLGTVINVFNNGANDLLQISLDSSFDVLDKNGKPKPEEIEASGQLVLVPFVEAIVPDVDMNRREMHITPPKGLLELNLRFDDRSKKERRQLEWKERKKFQKRLIAAKKKLCEMDQQHVFHGFQCGEKEQWSLLSDQIVGVNSRLLQDALQSLEQPANRWNAAELVSAMEEKRIRTVQISEKSLLTGSKTKLVRNIINMKEKGVELISNGKMAIVLLLKEKENEGCIYDPEVVENEATETSTLRMLQNLLSDHEKFVKVNDRVSVPLILVSSAQQIQSLRNLFTRNNHFAFDSEKVWFLEEEKLPVVSSSLEGQNKYKILMKSPWEILQSPVGSGGFISLFSKHGITDNLINMGVEYLELCCPCERSVGGNSLLVGLVDSREAKIGIQITSTIADPDENLDMILSMEFVKKLTKQSYKLRFDATAKTNSFIESVDKDWVTVTSSTPNSYELSCSVYSSLNACPLDKVCIVEVRE*