AlfalfaGEDB | Msa0714160

M. sativa cultivar zhongmu-4 / Msa0714160

KEGG: -
GO: GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0098542
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714160	XP_024639417.1	98.730	630	8	0	1	630	1	630	0.0	1286

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714160	sp\|Q66GP0\|SR1P1_ARATH	67.851	619	180	8	16	630	1	604	0.0	826

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714160	G7IU11	98.730	630	8	0	1	630	1	630	0.0	1286

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0714160	0.886751	2.602668e-72	-8.615850e-47
Msa0001460	Msa0714160	0.815669	8.213492e-52	-8.615850e-47
Msa0003470	Msa0714160	0.823897	1.081436e-53	-8.615850e-47
Msa0004350	Msa0714160	0.809636	1.715659e-50	-8.615850e-47
Msa0005160	Msa0714160	0.801158	1.027246e-48	-8.615850e-47
Msa0006700	Msa0714160	0.817039	4.054828e-52	-8.615850e-47
Msa0007160	Msa0714160	0.827470	1.537317e-54	-8.615850e-47
Msa0007230	Msa0714160	0.840520	8.275761e-58	-8.615850e-47
Msa0008330	Msa0714160	0.847816	9.104552e-60	-8.615850e-47
Msa0008350	Msa0714160	0.803568	3.276372e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714160	MtrunA17_Chr5g0401451	98.730	630	8	0	1	630	1	630	0.0	1286
Msa0714160	MtrunA17_Chr4g0053841	70.279	609	161	9	28	630	1	595	0.0	854
Msa0714160	MtrunA17_Chr4g0010091	41.694	614	316	8	6	606	1	585	1.31e-166	489
Msa0714160	MtrunA17_Chr1g0195911	41.784	639	300	17	25	630	22	621	9.44e-158	467
Msa0714160	MtrunA17_Chr7g0268781	40.469	640	315	14	25	630	22	629	1.50e-153	456
Msa0714160	MtrunA17_Chr5g0432861	39.094	596	297	7	24	606	9	551	6.82e-146	435
Msa0714160	MtrunA17_Chr3g0108331	40.681	617	300	12	24	630	8	568	4.09e-145	432
Msa0714160	MtrunA17_Chr7g0245201	41.531	614	311	17	35	630	57	640	9.09e-143	429
Msa0714160	MtrunA17_Chr4g0050021	38.356	584	289	8	29	551	33	606	5.59e-132	402
Msa0714160	MtrunA17_Chr2g0279481	36.780	590	298	7	28	551	32	612	3.45e-126	388

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714160	AT5G67385.1	67.851	619	180	8	16	630	1	604	0.0	826
Msa0714160	AT5G67385.4	67.770	574	166	8	61	630	1	559	0.0	759
Msa0714160	AT5G67385.5	67.770	574	166	8	61	630	1	559	0.0	759
Msa0714160	AT5G67385.2	67.770	574	166	8	61	630	1	559	0.0	759
Msa0714160	AT5G67385.3	67.770	574	166	8	61	630	1	559	0.0	759
Msa0714160	AT3G49970.1	54.795	584	185	15	52	630	6	515	0.0	583
Msa0714160	AT3G49970.2	54.795	584	185	15	52	630	6	515	0.0	583
Msa0714160	AT5G48800.1	45.017	602	275	12	20	606	22	582	5.93e-164	483
Msa0714160	AT2G30520.1	40.514	622	313	10	24	630	14	593	3.77e-151	449
Msa0714160	AT1G03010.1	40.678	649	308	15	24	630	21	634	6.92e-150	447

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Find 135 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATGGCAATGCAATT+AGG	0.350908	5_1:-6778067	Msa0714160:CDS
AAAGAAAGTTTGCAGCATAA+TGG	0.400198	5_1:-6776858	Msa0714160:CDS
AAATCTTTCTGTACTTGCCA+TGG	0.535061	5_1:-6780075	Msa0714160:exon
AAATGAAGACCTCAAATTAG+AGG	0.432193	5_1:-6776618	Msa0714160:CDS
AACAGAGACCAGTTGTTGAT+TGG	0.421313	5_1:-6778962	Msa0714160:CDS
AACATCAGAGAGTTCAACGA+AGG	0.692508	5_1:+6779355	None:intergenic
AACCATATTGTAAAGGGTGG+TGG	0.564776	5_1:-6776222	Msa0714160:three_prime_UTR
AACTGATAAATTTCTGTCAG+TGG	0.538405	5_1:+6777829	None:intergenic
AAGAAAGGTAATTCTATGGA+GGG	0.598694	5_1:+6780377	None:intergenic
AAGAGTTCTTATAGCAATGA+TGG	0.430446	5_1:-6778898	Msa0714160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAGGTAATTCTATGGA+GGG	+	chr5_1:6776081-6776100	None:intergenic	30.0%
CTAGAAGAAAGGTAATTCTA+TGG	+	chr5_1:6776085-6776104	None:intergenic	30.0%
TCACAAGGTCAAATATTTGT+TGG	-	chr5_1:6776129-6776148	Msa0714160:three_prime_UTR	30.0%
TTTCTGCTTCATTTATAGTG+AGG	-	chr5_1:6776354-6776373	Msa0714160:CDS	30.0%
TAAAGGAAGATTCTCCAATT+TGG	+	chr5_1:6776670-6776689	None:intergenic	30.0%
CACTACCTTATGTAAAGTAA+AGG	+	chr5_1:6776687-6776706	None:intergenic	30.0%
TTGAAAGCAAGATGTATATG+CGG	-	chr5_1:6776879-6776898	Msa0714160:CDS	30.0%
TTCTGTCATCTCAAGATATT+CGG	+	chr5_1:6777223-6777242	None:intergenic	30.0%
ATGACAGAAGATTATTCAGT+TGG	-	chr5_1:6777234-6777253	Msa0714160:intron	30.0%
TGACAGAAGATTATTCAGTT+GGG	-	chr5_1:6777235-6777254	Msa0714160:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	6776058	6780419	6776058	ID=Msa0714160;Name=Msa0714160
chr5_1	mRNA	6776058	6780419	6776058	ID=Msa0714160-mRNA-1;Parent=Msa0714160;Name=Msa0714160-mRNA-1;_AED=0.02;_eAED=0.02;_QI=341\|1\|1\|1\|1\|1\|5\|285\|630
chr5_1	exon	6776058	6776909	6776058	ID=Msa0714160-mRNA-1:exon:2812;Parent=Msa0714160-mRNA-1
chr5_1	exon	6777739	6778275	6777739	ID=Msa0714160-mRNA-1:exon:2811;Parent=Msa0714160-mRNA-1
chr5_1	exon	6778827	6779444	6778827	ID=Msa0714160-mRNA-1:exon:2810;Parent=Msa0714160-mRNA-1
chr5_1	exon	6779777	6779846	6779777	ID=Msa0714160-mRNA-1:exon:2809;Parent=Msa0714160-mRNA-1
chr5_1	exon	6779978	6780419	6779978	ID=Msa0714160-mRNA-1:exon:2808;Parent=Msa0714160-mRNA-1
chr5_1	five_prime_UTR	6780079	6780419	6780079	ID=Msa0714160-mRNA-1:five_prime_utr;Parent=Msa0714160-mRNA-1
chr5_1	CDS	6779978	6780078	6779978	ID=Msa0714160-mRNA-1:cds;Parent=Msa0714160-mRNA-1
chr5_1	CDS	6779777	6779846	6779777	ID=Msa0714160-mRNA-1:cds;Parent=Msa0714160-mRNA-1
chr5_1	CDS	6778827	6779444	6778827	ID=Msa0714160-mRNA-1:cds;Parent=Msa0714160-mRNA-1
chr5_1	CDS	6777739	6778275	6777739	ID=Msa0714160-mRNA-1:cds;Parent=Msa0714160-mRNA-1
chr5_1	CDS	6776343	6776909	6776343	ID=Msa0714160-mRNA-1:cds;Parent=Msa0714160-mRNA-1
chr5_1	three_prime_UTR	6776058	6776342	6776058	ID=Msa0714160-mRNA-1:three_prime_utr;Parent=Msa0714160-mRNA-1

Gene Sequence

>Msa0714160

ATGGTGGATCGTGGTCTAGACAAAACTACAACATCTGCTAGTGACTTGTCTCTGAAGAAGCAAGAGCTTCTATCTAGTGCTATGAAAAGAACAAGTGACTGGATTTTTTCTCAGGAGATTCCAAGTGATGTCAATGTCCAAATTGGAGAATCTTCCTTTACTTTACATAAGTATCCATTAGTCTCCAAGTGTGGATACATTCGGAAACTCGTCTCAGAATCTAATGACTCCGACGTGTCCTTCGTTGAACTCTCTGATGTTCCTGGTGGTGCAGAAGCATTTGAACTAGCAGCAAAATTCTGCTACGGTATAAATTTCGAGATAAATGTGGAAAACATCGCTATGCTTAGATGTGTGGCCGAATATCTTGAGATGACAGAAGATTATTCAGTTGGGAACTTGGTGGCAAGAACTGATGCATATTTGAATGATGTAGCACTAAAAACAATTGCAGGTTCTGTTTCAATCTTACATATTTCAGAAAGCCTTCTTCCAATAGCAGAGAAAACAAAATTGGTGAGCAAATGCATAGATGCAATTGCTTATATTGCTTGCAAGGAAAGTCAATTGTGTTCATCTGTAAGAAGTGATAGCGGCTCTGACGGAGTGATGTCATCTTCTGTGTCATCTCAACAGAGACCAGTTGTTGATTGGTGGGCTGAAGATCTAACTGTTCTTAGAATCGACCTTTTTCAAAGAGTTCTTATAGCAATGATGGCTAGAGGGTTTAAACAGTTTGCTATTGGTCCTATTCTAATGCTCTATGCACAGAAATCTCTACGAGGTTTGGATATATTTGGAAAGGGAAGGAAGAAGATTGAACCAAGACAAGAGCATGAAAAAAGGGTTATTTTAGAGACAATAGTGAGCCTATTACCAAAAGAGAAGAATGCAATGTCAGTAAGCTTTCTATCGATGCTGCTTCGTGCAGCAATATATCTTGATACAACAGTTGCTTGCAGGCTTGATTTGGAGAAAAGAATGGCAATGCAATTAGGACAAGCTGTCTTAGATGATCTTCTCATTCCTTCGTATTCATTTACCGGGGACACGTTATTCGATGTGGACACGGTTCAAAGGATCATGAATAATTACCAAGAATCTCAAATTGGAAACCACTTTGTCTATAATGGTGATGATGAATATTTTTCTCCACCACAAAGTGATATTGAACGGGTTGGAAAGCTAATGGAAAACTATCTTGCTGAAATAGCCACTGACAGAAATTTATCAGTTGCAAAGTTCATCAGTCTAGCTGAATTGATTCCTGAACAATCAAAACCTACAGAAGATGGGATGTATAGAGCCTTAGACATCTATTTAAAGGCTCATCCCAATTTAAGTGACATGGAGAGAAAGAAAGTTTGCAGCATAATGGACTGTCAAAGACTATCACGAGAAGCATGTGCACATGCAGCTCAAAACGACCGGTTACCAGTCCAAACCGTTGTCCAAGTTCTCTATTACGAACAGCAACGACTTCGCGATGCAATGAATGGAAGTGAAACTGCAGAATCACCTTCTATTCACACCAAACTAAATGTATATTCAGGTGATATTCAAGTTTCAAATGAACTCACAAGCTTACGAAGAGAAAATGAAGACCTCAAATTAGAGGTAGTGAAGTTGAAAATGAAACTAAAAGAGATCGAGATTTCCACGCTTAAATCAACTGTTAAATCAACGGTAAAATCAACGGTTAATAGTCCTATTGCAAATGCTTCACCTTCTCATTCTCATTCTGCTGATAAGCCTCCACTACCTCGAAAATCATTTATAAGTTCGGTTTCAAAGAAACTTGGGAAGCTTTCTCCTTTTCCACGTTTGGATGGTATTGTTACTGCTAAAGGTAGGACAAAACCAAGCAAGAATCGACGACACTCTATTTCCTAA

Protein sequence

>Msa0714160

MVDRGLDKTTTSASDLSLKKQELLSSAMKRTSDWIFSQEIPSDVNVQIGESSFTLHKYPLVSKCGYIRKLVSESNDSDVSFVELSDVPGGAEAFELAAKFCYGINFEINVENIAMLRCVAEYLEMTEDYSVGNLVARTDAYLNDVALKTIAGSVSILHISESLLPIAEKTKLVSKCIDAIAYIACKESQLCSSVRSDSGSDGVMSSSVSSQQRPVVDWWAEDLTVLRIDLFQRVLIAMMARGFKQFAIGPILMLYAQKSLRGLDIFGKGRKKIEPRQEHEKRVILETIVSLLPKEKNAMSVSFLSMLLRAAIYLDTTVACRLDLEKRMAMQLGQAVLDDLLIPSYSFTGDTLFDVDTVQRIMNNYQESQIGNHFVYNGDDEYFSPPQSDIERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSKPTEDGMYRALDIYLKAHPNLSDMERKKVCSIMDCQRLSREACAHAAQNDRLPVQTVVQVLYYEQQRLRDAMNGSETAESPSIHTKLNVYSGDIQVSNELTSLRRENEDLKLEVVKLKMKLKEIEISTLKSTVKSTVKSTVNSPIANASPSHSHSADKPPLPRKSFISSVSKKLGKLSPFPRLDGIVTAKGRTKPSKNRRHSIS*