AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0714160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0714160 MtrunA17_Chr5g0401451 98.730 630 8 0 1 630 1 630 0.0 1286
Msa0714160 MtrunA17_Chr4g0053841 70.279 609 161 9 28 630 1 595 0.0 854
Msa0714160 MtrunA17_Chr4g0010091 41.694 614 316 8 6 606 1 585 1.31e-166 489
Msa0714160 MtrunA17_Chr1g0195911 41.784 639 300 17 25 630 22 621 9.44e-158 467
Msa0714160 MtrunA17_Chr7g0268781 40.469 640 315 14 25 630 22 629 1.50e-153 456
Msa0714160 MtrunA17_Chr5g0432861 39.094 596 297 7 24 606 9 551 6.82e-146 435
Msa0714160 MtrunA17_Chr3g0108331 40.681 617 300 12 24 630 8 568 4.09e-145 432
Msa0714160 MtrunA17_Chr7g0245201 41.531 614 311 17 35 630 57 640 9.09e-143 429
Msa0714160 MtrunA17_Chr4g0050021 38.356 584 289 8 29 551 33 606 5.59e-132 402
Msa0714160 MtrunA17_Chr2g0279481 36.780 590 298 7 28 551 32 612 3.45e-126 388
Msa0714160 MtrunA17_Chr2g0303541 38.278 546 305 11 34 551 20 561 5.96e-126 386
Msa0714160 MtrunA17_Chr8g0382231 36.269 579 301 11 10 551 19 566 6.43e-121 372
Msa0714160 MtrunA17_Chr2g0285511 35.636 550 299 10 34 536 20 561 1.14e-114 355
Msa0714160 MtrunA17_Chr2g0320691 35.043 585 341 13 24 576 7 584 4.41e-114 355
Msa0714160 MtrunA17_Chr8g0374011 34.522 617 326 14 24 567 1 612 2.94e-113 353
Msa0714160 MtrunA17_Chr1g0207461 38.205 479 259 11 37 493 25 488 2.50e-103 327
Msa0714160 MtrunA17_Chr1g0181181 35.306 490 269 7 34 499 20 485 2.96e-103 324
Msa0714160 MtrunA17_Chr5g0401341 38.936 470 264 9 37 493 24 483 2.77e-102 324
Msa0714160 MtrunA17_Chr1g0150191 38.136 472 268 11 36 491 23 486 5.88e-101 320
Msa0714160 MtrunA17_Chr5g0412591 37.972 503 232 10 36 493 22 489 2.94e-100 318
Msa0714160 MtrunA17_Chr1g0199631 36.674 469 260 7 58 500 8 465 5.95e-98 311
Msa0714160 MtrunA17_Chr4g0076521 35.408 466 281 7 36 493 22 475 2.50e-93 300
Msa0714160 MtrunA17_Chr8g0367891 35.433 508 270 12 43 519 29 509 4.93e-88 285
Msa0714160 MtrunA17_Chr2g0290741 35.000 460 275 7 39 493 25 465 2.95e-85 278
Msa0714160 MtrunA17_Chr1g0191711 30.996 542 323 12 26 554 44 547 1.37e-80 265
Msa0714160 MtrunA17_Chr1g0206621 69.343 137 40 1 47 181 75 211 3.45e-61 203
Msa0714160 MtrunA17_Chr4g0003891 39.362 282 152 4 219 494 46 314 1.75e-58 203
Msa0714160 MtrunA17_Chr2g0332281 36.119 335 187 6 219 544 24 340 2.28e-55 194
Msa0714160 MtrunA17_Chr4g0023801 27.405 551 331 19 43 558 11 527 3.38e-49 180
Msa0714160 MtrunA17_Chr4g0037661 25.185 540 345 15 43 551 6 517 4.32e-41 157
Msa0714160 MtrunA17_Chr1g0163311 25.801 562 329 20 43 562 6 521 2.22e-38 149
Msa0714160 MtrunA17_Chr2g0280541 25.799 407 250 13 107 495 2 374 3.02e-26 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0714160 AT5G67385.1 67.851 619 180 8 16 630 1 604 0.0 826
Msa0714160 AT5G67385.4 67.770 574 166 8 61 630 1 559 0.0 759
Msa0714160 AT5G67385.5 67.770 574 166 8 61 630 1 559 0.0 759
Msa0714160 AT5G67385.2 67.770 574 166 8 61 630 1 559 0.0 759
Msa0714160 AT5G67385.3 67.770 574 166 8 61 630 1 559 0.0 759
Msa0714160 AT3G49970.1 54.795 584 185 15 52 630 6 515 0.0 583
Msa0714160 AT3G49970.2 54.795 584 185 15 52 630 6 515 0.0 583
Msa0714160 AT5G48800.1 45.017 602 275 12 20 606 22 582 5.93e-164 483
Msa0714160 AT2G30520.1 40.514 622 313 10 24 630 14 593 3.77e-151 449
Msa0714160 AT1G03010.1 40.678 649 308 15 24 630 21 634 6.92e-150 447
Msa0714160 AT1G03010.2 40.852 634 299 14 39 630 8 607 1.29e-147 441
Msa0714160 AT1G03010.3 40.852 634 299 14 39 630 34 633 1.66e-147 441
Msa0714160 AT2G47860.1 42.986 556 270 12 25 551 23 560 1.13e-143 431
Msa0714160 AT2G47860.3 41.278 579 270 13 25 551 23 583 2.20e-138 419
Msa0714160 AT3G08570.1 42.589 533 278 13 35 551 30 550 3.88e-134 406
Msa0714160 AT2G30520.2 39.761 586 296 10 60 630 2 545 1.19e-132 400
Msa0714160 AT2G30520.3 39.761 586 296 10 60 630 2 545 1.19e-132 400
Msa0714160 AT1G30440.1 35.993 589 323 12 25 566 10 591 3.40e-120 372
Msa0714160 AT3G08660.1 37.914 604 298 14 35 626 30 568 8.71e-119 365
Msa0714160 AT5G13600.1 38.855 489 269 8 34 500 20 500 3.59e-115 357
Msa0714160 AT5G64330.2 35.823 589 274 9 30 516 42 628 3.02e-113 354
Msa0714160 AT5G64330.1 33.888 661 311 11 30 569 42 697 6.56e-113 355
Msa0714160 AT5G03250.1 35.522 594 330 16 25 577 10 591 1.75e-109 342
Msa0714160 AT3G08660.3 37.587 572 281 13 67 626 1 508 2.33e-109 339
Msa0714160 AT2G47860.4 43.379 438 211 10 25 442 23 443 5.51e-109 335
Msa0714160 AT5G66560.1 36.229 541 272 11 34 508 13 546 1.68e-106 336
Msa0714160 AT3G44820.1 33.333 585 339 10 24 563 7 585 1.79e-105 333
Msa0714160 AT2G47860.6 41.215 461 211 11 25 442 23 466 1.11e-103 323
Msa0714160 AT5G64330.3 35.159 566 263 9 53 516 6 569 2.17e-103 326
Msa0714160 AT2G47860.5 40.789 456 227 10 125 551 1 442 1.63e-101 319
Msa0714160 AT2G47860.2 40.789 456 227 10 125 551 1 442 1.63e-101 319
Msa0714160 AT5G66560.3 36.711 523 258 11 52 508 2 517 2.58e-101 322
Msa0714160 AT5G66560.4 40.312 449 239 10 82 508 66 507 6.01e-101 321
Msa0714160 AT2G14820.2 36.810 489 276 10 39 507 26 501 1.31e-100 320
Msa0714160 AT2G14820.1 36.810 489 276 10 39 507 26 501 1.31e-100 320
Msa0714160 AT1G67900.5 38.095 525 251 11 37 508 23 526 3.33e-99 316
Msa0714160 AT1G67900.1 38.095 525 251 11 37 508 23 526 3.33e-99 316
Msa0714160 AT1G67900.3 38.095 525 251 11 37 508 23 526 3.33e-99 316
Msa0714160 AT1G67900.6 38.095 525 251 11 37 508 23 526 3.33e-99 316
Msa0714160 AT1G67900.2 38.095 525 251 11 37 508 23 526 3.33e-99 316
Msa0714160 AT1G67900.4 38.095 525 251 11 37 508 23 526 3.33e-99 316
Msa0714160 AT3G50840.1 33.962 530 318 7 29 551 5 509 3.81e-98 311
Msa0714160 AT5G10250.2 33.391 578 313 13 23 562 33 576 5.02e-98 313
Msa0714160 AT5G10250.1 33.275 568 312 13 23 562 33 561 7.01e-96 307
Msa0714160 AT4G31820.1 35.477 482 275 11 39 508 26 483 3.33e-91 293
Msa0714160 AT4G37590.1 35.174 489 270 10 37 509 24 481 4.27e-88 286
Msa0714160 AT3G50840.2 34.137 498 296 7 61 551 1 473 1.11e-87 283
Msa0714160 AT3G50840.3 34.137 498 296 7 61 551 1 473 1.11e-87 283
Msa0714160 AT5G67440.3 35.714 462 283 9 37 493 24 476 2.58e-87 283
Msa0714160 AT5G67440.1 35.714 462 283 9 37 493 24 476 2.58e-87 283
Msa0714160 AT2G23050.1 33.824 476 269 10 37 506 24 459 3.09e-84 273
Msa0714160 AT5G47800.3 32.238 487 295 10 35 508 21 485 4.33e-83 272
Msa0714160 AT5G47800.1 32.238 487 295 10 35 508 21 485 4.33e-83 272
Msa0714160 AT5G47800.4 32.238 487 295 10 35 508 21 485 4.33e-83 272
Msa0714160 AT3G08660.2 39.474 418 219 10 35 446 30 419 1.35e-82 266
Msa0714160 AT5G67440.2 35.360 444 273 9 55 493 5 439 1.32e-81 267
Msa0714160 AT5G47800.2 32.238 487 295 10 35 508 134 598 1.83e-81 270
Msa0714160 AT4G31820.2 34.802 454 260 11 67 508 1 430 5.17e-80 263
Msa0714160 AT3G26490.1 32.685 514 287 12 37 504 23 523 1.07e-79 264
Msa0714160 AT3G26490.3 32.685 514 287 12 37 504 23 523 1.07e-79 264
Msa0714160 AT3G26490.4 32.685 514 287 12 37 504 23 523 1.07e-79 264
Msa0714160 AT5G03250.2 34.151 489 276 13 125 577 1 479 5.95e-76 251
Msa0714160 AT5G66560.2 33.122 474 245 10 34 442 13 479 1.81e-75 249
Msa0714160 AT3G26490.2 31.264 451 256 11 37 446 23 460 5.83e-60 209
Msa0714160 AT1G52770.1 36.624 314 165 5 193 494 13 304 2.21e-56 197
Msa0714160 AT2G23050.2 32.898 383 216 9 125 506 1 343 7.48e-56 194
Msa0714160 AT5G48130.1 28.390 472 287 12 34 491 33 467 4.33e-55 198
Msa0714160 AT3G15570.1 35.789 285 152 4 228 494 38 309 5.92e-51 183
Msa0714160 AT3G19850.1 27.669 459 276 10 65 491 29 463 1.27e-47 176
Msa0714160 AT1G50280.1 28.753 473 293 12 42 487 5 460 3.68e-46 171
Msa0714160 AT1G50280.2 29.977 427 261 10 82 487 18 427 1.88e-45 169
Msa0714160 AT3G22104.1 27.193 456 272 10 42 478 6 420 5.20e-40 154
Msa0714160 AT3G03510.1 27.696 408 239 9 94 496 8 364 4.13e-38 147
Msa0714160 AT5G17580.2 25.745 470 307 10 42 498 22 462 1.19e-37 147
Msa0714160 AT5G17580.1 25.745 470 307 10 42 498 7 447 1.68e-37 147
Msa0714160 AT3G22104.4 25.587 383 228 7 112 478 4 345 9.44e-28 117
Msa0714160 AT3G22104.2 25.587 383 228 7 112 478 4 345 9.44e-28 117
Msa0714160 AT3G22104.3 25.587 383 228 7 112 478 4 345 9.44e-28 117
Msa0714160 AT3G49900.2 31.795 195 112 7 30 213 55 239 1.30e-13 74.3
Msa0714160 AT3G49900.1 31.250 192 117 6 30 213 55 239 1.47e-13 73.9

Find 135 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCCATGTCACTTAAAT+TGG 0.099646 5_1:+6776880 None:intergenic
AGCCTTAGACATCTATTTAA+AGG 0.193457 5_1:-6777738 Msa0714160:intron
TCTTTCGAGCAGGATATATT+TGG 0.214701 5_1:-6778265 Msa0714160:intron
TAAAGGAAGATTCTCCAATT+TGG 0.228988 5_1:+6779788 None:intergenic
GACATTGCATTCTTCTCTTT+TGG 0.249323 5_1:+6778166 None:intergenic
GGAAACCACTTTGTCTATAA+TGG 0.269644 5_1:-6777932 Msa0714160:CDS
CACCACCACCCTTTACAATA+TGG 0.282070 5_1:+6776220 None:intergenic
GGTTTCCAATTTGAGATTCT+TGG 0.291899 5_1:+6777948 None:intergenic
CTAGATAAGAAGACCTTGTT+TGG 0.292025 5_1:-6780354 Msa0714160:five_prime_UTR
ATAACTTAAGAAAATGTTAA+AGG 0.301852 5_1:-6780179 Msa0714160:five_prime_UTR
ATTCCTTCGTATTCATTTAC+CGG 0.307235 5_1:-6778019 Msa0714160:CDS
TACCTTTAAATAGATGTCTA+AGG 0.307550 5_1:+6777736 None:intergenic
AGTTGCTTGCAGGCTTGATT+TGG 0.310330 5_1:-6778092 Msa0714160:CDS
TTTAGTTTGGTGTGAATAGA+AGG 0.321571 5_1:+6776695 None:intergenic
CTATAAGAACTCTTTGAAAA+AGG 0.323564 5_1:+6778907 None:intergenic
AATAGCAGAGAAAACAAAAT+TGG 0.326409 5_1:-6779099 Msa0714160:CDS
TTGATACAACAGTTGCTTGC+AGG 0.331579 5_1:-6778102 Msa0714160:CDS
GTTGAACTCTCTGATGTTCC+TGG 0.333752 5_1:-6779350 Msa0714160:CDS
ACCTGAATATACATTTAGTT+TGG 0.337497 5_1:+6776682 None:intergenic
AAAAGAATGGCAATGCAATT+AGG 0.350908 5_1:-6778067 Msa0714160:CDS
TCGAAAATCATTTATAAGTT+CGG 0.354375 5_1:-6776450 Msa0714160:CDS
AATTACCAAGAATCTCAAAT+TGG 0.354888 5_1:-6777953 Msa0714160:CDS
AGTGATGTCAATGTCCAAAT+TGG 0.359152 5_1:-6779802 Msa0714160:CDS
CTCTCCATGTCACTTAAATT+GGG 0.374237 5_1:+6776881 None:intergenic
TTCTGTCATCTCAAGATATT+CGG 0.376339 5_1:+6779235 None:intergenic
TCACAAGGTCAAATATTTGT+TGG 0.378136 5_1:-6780326 Msa0714160:five_prime_UTR
CTAGAAGAAAGGTAATTCTA+TGG 0.387879 5_1:+6780373 None:intergenic
ATAGAAATTTATTTGATTTG+AGG 0.387896 5_1:-6780292 Msa0714160:five_prime_UTR
ATAAAATATAATTCTTGAGT+TGG 0.390624 5_1:-6776193 Msa0714160:three_prime_UTR
AAGGAATCTTCAAATATAAA+AGG 0.394765 5_1:-6780160 Msa0714160:five_prime_UTR
AAAGAAAGTTTGCAGCATAA+TGG 0.400198 5_1:-6776858 Msa0714160:CDS
AGATTATTCAGTTGGGAACT+TGG 0.401252 5_1:-6779213 Msa0714160:CDS
GGATTGCATTGCAACCTTGC+TGG 0.406623 5_1:-6776172 Msa0714160:three_prime_UTR
TATCCACACTTGGAGACTAA+TGG 0.409668 5_1:+6779419 None:intergenic
AGAGAACTTGGACAACGGTT+TGG 0.419568 5_1:+6776774 None:intergenic
AACAGAGACCAGTTGTTGAT+TGG 0.421313 5_1:-6778962 Msa0714160:CDS
AGTTCGGTTTCAAAGAAACT+TGG 0.421844 5_1:-6776434 Msa0714160:CDS
AGTGGGAACCATATTGTAAA+GGG 0.423439 5_1:-6776228 Msa0714160:three_prime_UTR
GGGTTTAAACAGTTTGCTAT+TGG 0.424370 5_1:-6778870 Msa0714160:CDS
AAGAGTTCTTATAGCAATGA+TGG 0.430446 5_1:-6778898 Msa0714160:CDS
AAATGAAGACCTCAAATTAG+AGG 0.432193 5_1:-6776618 Msa0714160:CDS
CGACTTCGCGATGCAATGAA+TGG 0.432759 5_1:-6776737 Msa0714160:CDS
ATCTTCCTTTACTTTACATA+AGG 0.434540 5_1:-6779776 Msa0714160:intron
ATGACAGAAGATTATTCAGT+TGG 0.439432 5_1:-6779221 Msa0714160:CDS
CAATCAAAACCTACAGAAGA+TGG 0.439804 5_1:-6777770 Msa0714160:CDS
TGAACGGGTTGGAAAGCTAA+TGG 0.443135 5_1:-6777873 Msa0714160:CDS
GAAGGTGAAGCATTTGCAAT+AGG 0.443580 5_1:+6776506 None:intergenic
GATGGTATTGTTACTGCTAA+AGG 0.444847 5_1:-6776386 Msa0714160:CDS
TAGATAAGAAGACCTTGTTT+GGG 0.445988 5_1:-6780353 Msa0714160:five_prime_UTR
CAACGGTTTGGACTGGTAAC+CGG 0.447250 5_1:+6776786 None:intergenic
ACTTCACTACCTCTAATTTG+AGG 0.447292 5_1:+6776609 None:intergenic
ACAGAAATCTCTACGAGGTT+TGG 0.458956 5_1:-6778826 Msa0714160:intron
ATTTGGACATTGACATCACT+TGG 0.463936 5_1:+6779805 None:intergenic
AATTGCTTATATTGCTTGCA+AGG 0.465206 5_1:-6779057 Msa0714160:CDS
TCAGCCCACCAATCAACAAC+TGG 0.478880 5_1:+6778954 None:intergenic
CACGTTATTCGATGTGGACA+CGG 0.493140 5_1:-6777993 Msa0714160:CDS
TTCCTTCGTATTCATTTACC+GGG 0.494561 5_1:-6778018 Msa0714160:CDS
AAGTGGGAACCATATTGTAA+AGG 0.496550 5_1:-6776229 Msa0714160:three_prime_UTR
CCTTGTGAATTTCCCAAACA+AGG 0.497170 5_1:+6780341 None:intergenic
CTATACATCCCATCTTCTGT+AGG 0.497214 5_1:+6777761 None:intergenic
ATACCATCCAAACGTGGAAA+AGG 0.497451 5_1:+6776401 None:intergenic
ACCCGTTCAATATCACTTTG+TGG 0.498785 5_1:+6777887 None:intergenic
ACCACAAAGTGATATTGAAC+GGG 0.498903 5_1:-6777888 Msa0714160:CDS
TGTGCATAGAGCATTAGAAT+AGG 0.499783 5_1:+6778846 None:intergenic
AAGGTCATGAAAATAAATAC+AGG 0.501104 5_1:-6776322 Msa0714160:three_prime_UTR
ATGTCATCACGATGTTAAAG+TGG 0.506615 5_1:-6776246 Msa0714160:three_prime_UTR
TCTCCAAGTGTGGATACATT+CGG 0.506959 5_1:-6779412 Msa0714160:CDS
CGAGCAGGATATATTTGGAA+AGG 0.507201 5_1:-6778260 Msa0714160:intron
CACTACCTTATGTAAAGTAA+AGG 0.508799 5_1:+6779771 None:intergenic
GCTTGATTTGGAGAAAAGAA+TGG 0.510077 5_1:-6778080 Msa0714160:CDS
ACCAAACTAAATGTATATTC+AGG 0.522428 5_1:-6776683 Msa0714160:CDS
GAGTGTCGTCGATTCTTGCT+TGG 0.523000 5_1:+6776353 None:intergenic
AGAGACCAGTTGTTGATTGG+TGG 0.523518 5_1:-6778959 Msa0714160:CDS
GAGCAGGATATATTTGGAAA+GGG 0.526552 5_1:-6778259 Msa0714160:intron
AGTGTACCGTATGCTTAGAT+AGG 0.529667 5_1:+6776070 None:intergenic
TGACAGAAGATTATTCAGTT+GGG 0.532521 5_1:-6779220 Msa0714160:CDS
GGTCTTCTTATCTAGAAGAA+AGG 0.533076 5_1:+6780362 None:intergenic
AAATCTTTCTGTACTTGCCA+TGG 0.535061 5_1:-6780075 Msa0714160:exon
GCTGTTCGTAATAGAGAACT+TGG 0.535435 5_1:+6776762 None:intergenic
AACTGATAAATTTCTGTCAG+TGG 0.538405 5_1:+6777829 None:intergenic
CACCACAAAGTGATATTGAA+CGG 0.544352 5_1:-6777889 Msa0714160:CDS
ACTTGGACAACGGTTTGGAC+TGG 0.546671 5_1:+6776779 None:intergenic
TTTCTGCTTCATTTATAGTG+AGG 0.547211 5_1:-6780101 Msa0714160:five_prime_UTR
GTAATAGAGAACTTGGACAA+CGG 0.549721 5_1:+6776769 None:intergenic
TTTCCGAATGTATCCACACT+TGG 0.551161 5_1:+6779409 None:intergenic
AGAAGTGATAGCGGCTCTGA+CGG 0.551480 5_1:-6779011 Msa0714160:CDS
GTTCGGTTTCAAAGAAACTT+GGG 0.553017 5_1:-6776433 Msa0714160:CDS
AGGATATATTTGGAAAGGGA+AGG 0.553677 5_1:-6778255 Msa0714160:CDS
TCTTTCTGTACTTGCCATGG+TGG 0.556166 5_1:-6780072 Msa0714160:exon
CCTTGTTTGGGAAATTCACA+AGG 0.561007 5_1:-6780341 Msa0714160:five_prime_UTR
CGACGACACTCTATTTCCTA+AGG 0.562175 5_1:-6776341 Msa0714160:exon
AACCATATTGTAAAGGGTGG+TGG 0.564776 5_1:-6776222 Msa0714160:three_prime_UTR
TTATTCAGTTGGGAACTTGG+TGG 0.567121 5_1:-6779210 Msa0714160:CDS
CATCACCATTATAGACAAAG+TGG 0.567160 5_1:+6777927 None:intergenic
CAAAGTGATATTGAACGGGT+TGG 0.567740 5_1:-6777884 Msa0714160:CDS
GAAGAAAGGTAATTCTATGG+AGG 0.574630 5_1:+6780376 None:intergenic
TATAAATTTCGAGATAAATG+TGG 0.578053 5_1:-6779285 Msa0714160:CDS
TAAATCAACTGTTAAATCAA+CGG 0.578589 5_1:-6776549 Msa0714160:CDS
CACATGCAGCTCAAAACGAC+CGG 0.579581 5_1:-6776805 Msa0714160:CDS
TCGATGTGGACACGGTTCAA+AGG 0.579585 5_1:-6777985 Msa0714160:CDS
TCAGTTATAGTATGTGCTCA+AGG 0.582768 5_1:+6780136 None:intergenic
ATTCTATGGAGGGTAGATGA+AGG 0.584535 5_1:+6780387 None:intergenic
CTTATAGCAATGATGGCTAG+AGG 0.584871 5_1:-6778891 Msa0714160:CDS
CTATGAAAAGAACAAGTGAC+TGG 0.585425 5_1:-6779977 Msa0714160:intron
TTATAGCAATGATGGCTAGA+GGG 0.589083 5_1:-6778890 Msa0714160:CDS
AATCAAAACCTACAGAAGAT+GGG 0.590751 5_1:-6777769 Msa0714160:CDS
CTAGCAGCAAAATTCTGCTA+CGG 0.592687 5_1:-6779308 Msa0714160:CDS
TCAAATGCTTCTGCACCACC+AGG 0.593786 5_1:+6779332 None:intergenic
AAGAAAGGTAATTCTATGGA+GGG 0.598694 5_1:+6780377 None:intergenic
CACATCGAATAACGTGTCCC+CGG 0.613083 5_1:+6778000 None:intergenic
CGGGGACACGTTATTCGATG+TGG 0.614759 5_1:-6777999 Msa0714160:CDS
TCATCCCAATTTAAGTGACA+TGG 0.614869 5_1:-6776885 Msa0714160:CDS
GGTAGATGAAGGAATATGAG+TGG 0.620727 5_1:+6780398 None:intergenic
TAAATCAACGGTAAAATCAA+CGG 0.622532 5_1:-6776537 Msa0714160:CDS
TCAGCAGAATGAGAATGAGA+AGG 0.624756 5_1:+6776488 None:intergenic
CATCGCTATGCTTAGATGTG+TGG 0.625147 5_1:-6779258 Msa0714160:CDS
GAGACCAGTTGTTGATTGGT+GGG 0.625912 5_1:-6778958 Msa0714160:CDS
GTCTAGACCACGATCCACCA+TGG 0.633131 5_1:+6780058 None:intergenic
TGTCATCACGATGTTAAAGT+GGG 0.635930 5_1:-6776245 Msa0714160:three_prime_UTR
TTTAACAGTTGATTTAAGCG+TGG 0.636314 5_1:+6776556 None:intergenic
CGTTCAATATCACTTTGTGG+TGG 0.641780 5_1:+6777890 None:intergenic
TATCCATTAGTCTCCAAGTG+TGG 0.642032 5_1:-6779422 Msa0714160:CDS
GTATTGTTACTGCTAAAGGT+AGG 0.645750 5_1:-6776382 Msa0714160:CDS
GGGAACCATATTGTAAAGGG+TGG 0.650201 5_1:-6776225 Msa0714160:three_prime_UTR
GTACTTGCCATGGTGGATCG+TGG 0.650434 5_1:-6780065 Msa0714160:exon
TATATTGCGAGAAGTACAAG+TGG 0.662671 5_1:-6776136 Msa0714160:three_prime_UTR
AACATCAGAGAGTTCAACGA+AGG 0.692508 5_1:+6779355 None:intergenic
ATGAGAGTAGTACACCAGCA+AGG 0.699607 5_1:+6776158 None:intergenic
GAACTCTCTGATGTTCCTGG+TGG 0.699693 5_1:-6779347 Msa0714160:CDS
GAGTTCAACGAAGGACACGT+CGG 0.700242 5_1:+6779364 None:intergenic
TCATCTGTAAGAAGTGATAG+CGG 0.715394 5_1:-6779020 Msa0714160:CDS
TCCCCGGTAAATGAATACGA+AGG 0.717871 5_1:+6778016 None:intergenic
GTAACAATACCATCCAAACG+TGG 0.725647 5_1:+6776395 None:intergenic
TCCTTCGTATTCATTTACCG+GGG 0.730046 5_1:-6778017 Msa0714160:CDS
TATGCACAGAAATCTCTACG+AGG 0.833179 5_1:-6778831 Msa0714160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAATTATTAAGAATTA+AGG + chr5_1:6778168-6778187 None:intergenic 10.0%
!!! ATAGAAATTTATTTGATTTG+AGG - chr5_1:6776163-6776182 Msa0714160:three_prime_UTR 15.0%
!! ATAACTTAAGAAAATGTTAA+AGG - chr5_1:6776276-6776295 Msa0714160:three_prime_UTR 15.0%
!! CAAAAAAATCTTTATATTGA+CGG - chr5_1:6776985-6777004 Msa0714160:intron 15.0%
!!! GTTAAAATTTTACAATTTTC+AGG - chr5_1:6779546-6779565 Msa0714160:intron 15.0%
!! ATAAAATATAATTCTTGAGT+TGG - chr5_1:6780262-6780281 Msa0714160:five_prime_UTR 15.0%
!! AAGGAATCTTCAAATATAAA+AGG - chr5_1:6776295-6776314 Msa0714160:three_prime_UTR 20.0%
!!! TAATTATAGGATTTTTTCTC+AGG - chr5_1:6776622-6776641 Msa0714160:CDS 20.0%
!! TTAATCAATCATAAAAACGT+AGG + chr5_1:6776960-6776979 None:intergenic 20.0%
!! TATAAATTTCGAGATAAATG+TGG - chr5_1:6777170-6777189 Msa0714160:intron 20.0%
!!! TTTCTATCTTTTTTTTGAGA+GGG + chr5_1:6777661-6777680 None:intergenic 20.0%
!!! TTTTCTATCTTTTTTTTGAG+AGG + chr5_1:6777662-6777681 None:intergenic 20.0%
!! TTAAAAATAAATACTCCATC+CGG - chr5_1:6777683-6777702 Msa0714160:intron 20.0%
!! TATAAAAGTCTAATCAATGT+TGG + chr5_1:6778097-6778116 None:intergenic 20.0%
!!! TAGTAGTTTTAAAATGGATT+TGG + chr5_1:6778905-6778924 None:intergenic 20.0%
!!! TCTAAGTAGTAGTTTTAAAA+TGG + chr5_1:6778911-6778930 None:intergenic 20.0%
!!! TCCTATCATTAAATAGATTT+TGG - chr5_1:6779055-6779074 Msa0714160:CDS 20.0%
!! TTAACAAAATCAAAAGATCA+TGG - chr5_1:6779307-6779326 Msa0714160:CDS 20.0%
!! TAAATCAACTGTTAAATCAA+CGG - chr5_1:6779906-6779925 Msa0714160:intron 20.0%
!! TCGAAAATCATTTATAAGTT+CGG - chr5_1:6780005-6780024 Msa0714160:CDS 20.0%
!!! CATCTATTTTTTTTGTTTGT+GGG + chr5_1:6780352-6780371 None:intergenic 20.0%
!!! TCATCTATTTTTTTTGTTTG+TGG + chr5_1:6780353-6780372 None:intergenic 20.0%
!!! AAAAGTTTTAGGGAATAATG+AGG + chr5_1:6776210-6776229 None:intergenic 25.0%
! AATTAAGCAATACAACTCAT+TGG + chr5_1:6776607-6776626 None:intergenic 25.0%
! GAGTTGTATTGCTTAATTAT+AGG - chr5_1:6776609-6776628 Msa0714160:CDS 25.0%
! ATCTTCCTTTACTTTACATA+AGG - chr5_1:6776679-6776698 Msa0714160:CDS 25.0%
! ATCATAAAAACGTAGGTAAA+AGG + chr5_1:6776953-6776972 None:intergenic 25.0%
!!! AATTTTGTTTTCTCTGCTAT+TGG + chr5_1:6777357-6777376 None:intergenic 25.0%
! AATAGCAGAGAAAACAAAAT+TGG - chr5_1:6777356-6777375 Msa0714160:intron 25.0%
!! CTATAAGAACTCTTTGAAAA+AGG + chr5_1:6777551-6777570 None:intergenic 25.0%
!!! TTCTATCTTTTTTTTGAGAG+GGG + chr5_1:6777660-6777679 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG + chr5_1:6777814-6777833 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr5_1:6777740-6777759 Msa0714160:CDS 25.0%
! CATTCAATAAATGATGTATG+TGG + chr5_1:6777740-6777759 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG - chr5_1:6777814-6777833 Msa0714160:CDS 25.0%
! TGTAATTATATGTGTAAGTG+CGG + chr5_1:6777936-6777955 None:intergenic 25.0%
! AATTACCAAGAATCTCAAAT+TGG - chr5_1:6778502-6778521 Msa0714160:intron 25.0%
! TACCTTTAAATAGATGTCTA+AGG + chr5_1:6778722-6778741 None:intergenic 25.0%
! ATCTATTTACATACAGAGAT+AGG + chr5_1:6778966-6778985 None:intergenic 25.0%
! GCCAAAATCTATTTAATGAT+AGG + chr5_1:6779059-6779078 None:intergenic 25.0%
! AGCTAAAAATCTTTATCCAA+TGG - chr5_1:6779095-6779114 Msa0714160:CDS 25.0%
!! CAAATAAATGTATTGCTGTT+TGG - chr5_1:6779271-6779290 Msa0714160:CDS 25.0%
! TTTGTATAGTAACACATGTT+TGG + chr5_1:6779408-6779427 None:intergenic 25.0%
! ACAATAATACATGTTTGGAA+TGG + chr5_1:6779444-6779463 None:intergenic 25.0%
! ACACTACAATAATACATGTT+TGG + chr5_1:6779449-6779468 None:intergenic 25.0%
! ACCAAACTAAATGTATATTC+AGG - chr5_1:6779772-6779791 Msa0714160:intron 25.0%
! ACCTGAATATACATTTAGTT+TGG + chr5_1:6779776-6779795 None:intergenic 25.0%
! TAAATCAACGGTAAAATCAA+CGG - chr5_1:6779918-6779937 Msa0714160:intron 25.0%
!! GAACTTATAAATGATTTTCG+AGG + chr5_1:6780006-6780025 None:intergenic 25.0%
!!! GTATTTATTTTCATGACCTT+AGG + chr5_1:6780133-6780152 None:intergenic 25.0%
! AAGGTCATGAAAATAAATAC+AGG - chr5_1:6780133-6780152 Msa0714160:five_prime_UTR 25.0%
AAGAAAGGTAATTCTATGGA+GGG + chr5_1:6776081-6776100 None:intergenic 30.0%
CTAGAAGAAAGGTAATTCTA+TGG + chr5_1:6776085-6776104 None:intergenic 30.0%
! TAGATAAGAAGACCTTGTTT+GGG - chr5_1:6776102-6776121 Msa0714160:three_prime_UTR 30.0%
TCACAAGGTCAAATATTTGT+TGG - chr5_1:6776129-6776148 Msa0714160:three_prime_UTR 30.0%
TTTCTGCTTCATTTATAGTG+AGG - chr5_1:6776354-6776373 Msa0714160:CDS 30.0%
!! TATTGTTTGCTACCTTTTGT+TGG - chr5_1:6776566-6776585 Msa0714160:CDS 30.0%
TAAAGGAAGATTCTCCAATT+TGG + chr5_1:6776670-6776689 None:intergenic 30.0%
CACTACCTTATGTAAAGTAA+AGG + chr5_1:6776687-6776706 None:intergenic 30.0%
TTGAAAGCAAGATGTATATG+CGG - chr5_1:6776879-6776898 Msa0714160:CDS 30.0%
TTCTGTCATCTCAAGATATT+CGG + chr5_1:6777223-6777242 None:intergenic 30.0%
ATGACAGAAGATTATTCAGT+TGG - chr5_1:6777234-6777253 Msa0714160:intron 30.0%
TGACAGAAGATTATTCAGTT+GGG - chr5_1:6777235-6777254 Msa0714160:intron 30.0%
AATTGCTTATATTGCTTGCA+AGG - chr5_1:6777398-6777417 Msa0714160:intron 30.0%
AAGAGTTCTTATAGCAATGA+TGG - chr5_1:6777557-6777576 Msa0714160:intron 30.0%
GTAATTATATGTGTAAGTGC+GGG + chr5_1:6777935-6777954 None:intergenic 30.0%
!!! ATTTTTTCTTTCTTTCGAGC+AGG - chr5_1:6778180-6778199 Msa0714160:CDS 30.0%
! AAGACAAGAGCATGAAAAAA+GGG - chr5_1:6778237-6778256 Msa0714160:CDS 30.0%
!! CATTCTTCTCTTTTGGTAAT+AGG + chr5_1:6778285-6778304 None:intergenic 30.0%
AAAAGAATGGCAATGCAATT+AGG - chr5_1:6778388-6778407 Msa0714160:intron 30.0%
ATTCCTTCGTATTCATTTAC+CGG - chr5_1:6778436-6778455 Msa0714160:intron 30.0%
AACTGATAAATTTCTGTCAG+TGG + chr5_1:6778629-6778648 None:intergenic 30.0%
AATCAAAACCTACAGAAGAT+GGG - chr5_1:6778686-6778705 Msa0714160:intron 30.0%
AGCCTTAGACATCTATTTAA+AGG - chr5_1:6778717-6778736 Msa0714160:intron 30.0%
TAATGATAGGAAAACACAAG+CGG + chr5_1:6779046-6779065 None:intergenic 30.0%
!! AAGCTCTAGAGAATTAGTTT+AGG + chr5_1:6779224-6779243 None:intergenic 30.0%
ACAAAATCAAAAGATCATGG+TGG - chr5_1:6779310-6779329 Msa0714160:CDS 30.0%
!!! TGTGAAGTTTGTGTTGTTTT+TGG - chr5_1:6779344-6779363 Msa0714160:CDS 30.0%
AAAGAAAGTTTGCAGCATAA+TGG - chr5_1:6779597-6779616 Msa0714160:intron 30.0%
!! TTTAGTTTGGTGTGAATAGA+AGG + chr5_1:6779763-6779782 None:intergenic 30.0%
AAATGAAGACCTCAAATTAG+AGG - chr5_1:6779837-6779856 Msa0714160:intron 30.0%
! TTTAACAGTTGATTTAAGCG+TGG + chr5_1:6779902-6779921 None:intergenic 30.0%
!! ATAAATGATTTTCGAGGTAG+TGG + chr5_1:6780000-6780019 None:intergenic 30.0%
! TTTTCTCCTATCTAAGCATA+CGG - chr5_1:6780379-6780398 Msa0714160:five_prime_UTR 30.0%
GAAGAAAGGTAATTCTATGG+AGG + chr5_1:6776082-6776101 None:intergenic 35.0%
GGTCTTCTTATCTAGAAGAA+AGG + chr5_1:6776096-6776115 None:intergenic 35.0%
CTAGATAAGAAGACCTTGTT+TGG - chr5_1:6776101-6776120 Msa0714160:three_prime_UTR 35.0%
! TGCTGAGCTGAAAAGTTTTA+GGG + chr5_1:6776220-6776239 None:intergenic 35.0%
! ATGCTGAGCTGAAAAGTTTT+AGG + chr5_1:6776221-6776240 None:intergenic 35.0%
TCAGTTATAGTATGTGCTCA+AGG + chr5_1:6776322-6776341 None:intergenic 35.0%
AAATCTTTCTGTACTTGCCA+TGG - chr5_1:6776380-6776399 Msa0714160:CDS 35.0%
CTATGAAAAGAACAAGTGAC+TGG - chr5_1:6776478-6776497 Msa0714160:CDS 35.0%
! TGCTACCTTTTGTTGGATTT+AGG - chr5_1:6776573-6776592 Msa0714160:CDS 35.0%
! GCTACCTTTTGTTGGATTTA+GGG - chr5_1:6776574-6776593 Msa0714160:CDS 35.0%
ATTTGGACATTGACATCACT+TGG + chr5_1:6776653-6776672 None:intergenic 35.0%
AGTGATGTCAATGTCCAAAT+TGG - chr5_1:6776653-6776672 Msa0714160:CDS 35.0%
AGATTATTCAGTTGGGAACT+TGG - chr5_1:6777242-6777261 Msa0714160:intron 35.0%
GTAGCACTAAAAACAATTGC+AGG - chr5_1:6777294-6777313 Msa0714160:intron 35.0%
! TTTTCTCTGCTATTGGAAGA+AGG + chr5_1:6777350-6777369 None:intergenic 35.0%
TCATCTGTAAGAAGTGATAG+CGG - chr5_1:6777435-6777454 Msa0714160:intron 35.0%
TTATAGCAATGATGGCTAGA+GGG - chr5_1:6777565-6777584 Msa0714160:intron 35.0%
!! GGGTTTAAACAGTTTGCTAT+TGG - chr5_1:6777585-6777604 Msa0714160:intron 35.0%
! TGTGCATAGAGCATTAGAAT+AGG + chr5_1:6777612-6777631 None:intergenic 35.0%
! CTATAAAAGCATACTCCTTC+CGG + chr5_1:6777836-6777855 None:intergenic 35.0%
TGTTCATATCTGTGCTTCAT+AGG - chr5_1:6777990-6778009 Msa0714160:CDS 35.0%
! CTTCTTTTCTTTCGCAAACA+AGG + chr5_1:6778025-6778044 None:intergenic 35.0%
TCTTTCGAGCAGGATATATT+TGG - chr5_1:6778190-6778209 Msa0714160:CDS 35.0%
GAGCAGGATATATTTGGAAA+GGG - chr5_1:6778196-6778215 Msa0714160:CDS 35.0%
AGGATATATTTGGAAAGGGA+AGG - chr5_1:6778200-6778219 Msa0714160:CDS 35.0%
!!! CTTTTTTCATGCTCTTGTCT+TGG + chr5_1:6778238-6778257 None:intergenic 35.0%
! CAAGACAAGAGCATGAAAAA+AGG - chr5_1:6778236-6778255 Msa0714160:CDS 35.0%
! GACATTGCATTCTTCTCTTT+TGG + chr5_1:6778292-6778311 None:intergenic 35.0%
!! GCTTGATTTGGAGAAAAGAA+TGG - chr5_1:6778375-6778394 Msa0714160:intron 35.0%
TTCCTTCGTATTCATTTACC+GGG - chr5_1:6778437-6778456 Msa0714160:intron 35.0%
! GGTTTCCAATTTGAGATTCT+TGG + chr5_1:6778510-6778529 None:intergenic 35.0%
GGAAACCACTTTGTCTATAA+TGG - chr5_1:6778523-6778542 Msa0714160:intron 35.0%
CATCACCATTATAGACAAAG+TGG + chr5_1:6778531-6778550 None:intergenic 35.0%
CACCACAAAGTGATATTGAA+CGG - chr5_1:6778566-6778585 Msa0714160:intron 35.0%
ACCACAAAGTGATATTGAAC+GGG - chr5_1:6778567-6778586 Msa0714160:intron 35.0%
!!! TCTGTAGGTTTTGATTGTTC+AGG + chr5_1:6778682-6778701 None:intergenic 35.0%
CAATCAAAACCTACAGAAGA+TGG - chr5_1:6778685-6778704 Msa0714160:intron 35.0%
TCATCCCAATTTAAGTGACA+TGG - chr5_1:6779570-6779589 Msa0714160:intron 35.0%
! CTCTCCATGTCACTTAAATT+GGG + chr5_1:6779577-6779596 None:intergenic 35.0%
! TCTCTCCATGTCACTTAAAT+TGG + chr5_1:6779578-6779597 None:intergenic 35.0%
GTAATAGAGAACTTGGACAA+CGG + chr5_1:6779689-6779708 None:intergenic 35.0%
ACTTCACTACCTCTAATTTG+AGG + chr5_1:6779849-6779868 None:intergenic 35.0%
AGTTCGGTTTCAAAGAAACT+TGG - chr5_1:6780021-6780040 Msa0714160:CDS 35.0%
GTTCGGTTTCAAAGAAACTT+GGG - chr5_1:6780022-6780041 Msa0714160:CDS 35.0%
GATGGTATTGTTACTGCTAA+AGG - chr5_1:6780069-6780088 Msa0714160:exon 35.0%
GTATTGTTACTGCTAAAGGT+AGG - chr5_1:6780073-6780092 Msa0714160:exon 35.0%
ATGTCATCACGATGTTAAAG+TGG - chr5_1:6780209-6780228 Msa0714160:five_prime_UTR 35.0%
TGTCATCACGATGTTAAAGT+GGG - chr5_1:6780210-6780229 Msa0714160:five_prime_UTR 35.0%
AAGTGGGAACCATATTGTAA+AGG - chr5_1:6780226-6780245 Msa0714160:five_prime_UTR 35.0%
AGTGGGAACCATATTGTAAA+GGG - chr5_1:6780227-6780246 Msa0714160:five_prime_UTR 35.0%
! TATATTGCGAGAAGTACAAG+TGG - chr5_1:6780319-6780338 Msa0714160:five_prime_UTR 35.0%
ATTCTATGGAGGGTAGATGA+AGG + chr5_1:6776071-6776090 None:intergenic 40.0%
CCTTGTGAATTTCCCAAACA+AGG + chr5_1:6776117-6776136 None:intergenic 40.0%
! CCTTGTTTGGGAAATTCACA+AGG - chr5_1:6776114-6776133 Msa0714160:three_prime_UTR 40.0%
CAGTCCCTAAATCCAACAAA+AGG + chr5_1:6776581-6776600 None:intergenic 40.0%
! TATCCATTAGTCTCCAAGTG+TGG - chr5_1:6777033-6777052 Msa0714160:intron 40.0%
TATCCACACTTGGAGACTAA+TGG + chr5_1:6777039-6777058 None:intergenic 40.0%
TCTCCAAGTGTGGATACATT+CGG - chr5_1:6777043-6777062 Msa0714160:intron 40.0%
TTTCCGAATGTATCCACACT+TGG + chr5_1:6777049-6777068 None:intergenic 40.0%
AACATCAGAGAGTTCAACGA+AGG + chr5_1:6777103-6777122 None:intergenic 40.0%
CTAGCAGCAAAATTCTGCTA+CGG - chr5_1:6777147-6777166 Msa0714160:intron 40.0%
TTATTCAGTTGGGAACTTGG+TGG - chr5_1:6777245-6777264 Msa0714160:intron 40.0%
AACAGAGACCAGTTGTTGAT+TGG - chr5_1:6777493-6777512 Msa0714160:intron 40.0%
CTTATAGCAATGATGGCTAG+AGG - chr5_1:6777564-6777583 Msa0714160:intron 40.0%
TATGCACAGAAATCTCTACG+AGG - chr5_1:6777624-6777643 Msa0714160:intron 40.0%
ACAGAAATCTCTACGAGGTT+TGG - chr5_1:6777629-6777648 Msa0714160:intron 40.0%
TGCTTATAATAGTGACCGGA+TGG + chr5_1:6777818-6777837 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+AGG - chr5_1:6777818-6777837 Msa0714160:CDS 40.0%
AGACACAACTTGTGTAAGTG+CGG + chr5_1:6777908-6777927 None:intergenic 40.0%
CGAGCAGGATATATTTGGAA+AGG - chr5_1:6778195-6778214 Msa0714160:CDS 40.0%
TTGATACAACAGTTGCTTGC+AGG - chr5_1:6778353-6778372 Msa0714160:intron 40.0%
TCCTTCGTATTCATTTACCG+GGG - chr5_1:6778438-6778457 Msa0714160:intron 40.0%
CGTTCAATATCACTTTGTGG+TGG + chr5_1:6778568-6778587 None:intergenic 40.0%
ACCCGTTCAATATCACTTTG+TGG + chr5_1:6778571-6778590 None:intergenic 40.0%
CAAAGTGATATTGAACGGGT+TGG - chr5_1:6778571-6778590 Msa0714160:intron 40.0%
CTATACATCCCATCTTCTGT+AGG + chr5_1:6778697-6778716 None:intergenic 40.0%
!! CATAGAGGAAGTGTAGCTTT+TGG + chr5_1:6778818-6778837 None:intergenic 40.0%
ATGCAATCACAGATCTCAGT+CGG - chr5_1:6778847-6778866 Msa0714160:CDS 40.0%
GATCTCAGTCGGATGAAAAT+TGG - chr5_1:6778858-6778877 Msa0714160:CDS 40.0%
CTCGACCATTGAATGAAGAT+CGG - chr5_1:6779019-6779038 Msa0714160:CDS 40.0%
CACTTACGAATCTCTACCAT+TGG + chr5_1:6779114-6779133 None:intergenic 40.0%
TCGTAAGTGCAATGACTATG+AGG - chr5_1:6779125-6779144 Msa0714160:CDS 40.0%
CGTAAGTGCAATGACTATGA+GGG - chr5_1:6779126-6779145 Msa0714160:CDS 40.0%
GTAAGTGCAATGACTATGAG+GGG - chr5_1:6779127-6779146 Msa0714160:CDS 40.0%
GCTGTTCGTAATAGAGAACT+TGG + chr5_1:6779696-6779715 None:intergenic 40.0%
! GAAGGTGAAGCATTTGCAAT+AGG + chr5_1:6779952-6779971 None:intergenic 40.0%
TCAGCAGAATGAGAATGAGA+AGG + chr5_1:6779970-6779989 None:intergenic 40.0%
!! AATGATTTTCGAGGTAGTGG+AGG + chr5_1:6779997-6780016 None:intergenic 40.0%
ATACCATCCAAACGTGGAAA+AGG + chr5_1:6780057-6780076 None:intergenic 40.0%
GTAACAATACCATCCAAACG+TGG + chr5_1:6780063-6780082 None:intergenic 40.0%
AACCATATTGTAAAGGGTGG+TGG - chr5_1:6780233-6780252 Msa0714160:five_prime_UTR 40.0%
AGTGTACCGTATGCTTAGAT+AGG + chr5_1:6780388-6780407 None:intergenic 40.0%
TCTTTCTGTACTTGCCATGG+TGG - chr5_1:6776383-6776402 Msa0714160:CDS 45.0%
GTTGAACTCTCTGATGTTCC+TGG - chr5_1:6777105-6777124 Msa0714160:intron 45.0%
CATCGCTATGCTTAGATGTG+TGG - chr5_1:6777197-6777216 Msa0714160:intron 45.0%
! AGAGACCAGTTGTTGATTGG+TGG - chr5_1:6777496-6777515 Msa0714160:intron 45.0%
! GAGACCAGTTGTTGATTGGT+GGG - chr5_1:6777497-6777516 Msa0714160:intron 45.0%
GCAACAGACACAACTTGTGT+CGG + chr5_1:6777885-6777904 None:intergenic 45.0%
GACACAACTTGTGTAAGTGC+GGG + chr5_1:6777907-6777926 None:intergenic 45.0%
AGTTGCTTGCAGGCTTGATT+TGG - chr5_1:6778363-6778382 Msa0714160:intron 45.0%
TCCCCGGTAAATGAATACGA+AGG + chr5_1:6778442-6778461 None:intergenic 45.0%
CACGTTATTCGATGTGGACA+CGG - chr5_1:6778462-6778481 Msa0714160:intron 45.0%
!! TGAACGGGTTGGAAAGCTAA+TGG - chr5_1:6778582-6778601 Msa0714160:intron 45.0%
TTGCATGACTGCATGCATAG+AGG + chr5_1:6778833-6778852 None:intergenic 45.0%
GCAATGACTATGAGGGGATT+CGG - chr5_1:6779133-6779152 Msa0714160:CDS 45.0%
TGTTATGTTGTTCCCACGAG+AGG + chr5_1:6779162-6779181 None:intergenic 45.0%
AGAGAACTTGGACAACGGTT+TGG + chr5_1:6779684-6779703 None:intergenic 45.0%
! GCTTTCTCCTTTTCCACGTT+TGG - chr5_1:6780047-6780066 Msa0714160:CDS 45.0%
! TCTCCTTTTCCACGTTTGGA+TGG - chr5_1:6780051-6780070 Msa0714160:CDS 45.0%
CGACGACACTCTATTTCCTA+AGG - chr5_1:6780114-6780133 Msa0714160:five_prime_UTR 45.0%
GGGAACCATATTGTAAAGGG+TGG - chr5_1:6780230-6780249 Msa0714160:five_prime_UTR 45.0%
CACCACCACCCTTTACAATA+TGG + chr5_1:6780238-6780257 None:intergenic 45.0%
ATGAGAGTAGTACACCAGCA+AGG + chr5_1:6780300-6780319 None:intergenic 45.0%
!!! TTTAAATAGATTTTTTTAAA+AGG + chr5_1:6778775-6778794 None:intergenic 5.0%
!!! TTTTAAAAAAATCTATTTAA+AGG - chr5_1:6778774-6778793 Msa0714160:intron 5.0%
GAGTTCAACGAAGGACACGT+CGG + chr5_1:6777094-6777113 None:intergenic 50.0%
GAACTCTCTGATGTTCCTGG+TGG - chr5_1:6777108-6777127 Msa0714160:intron 50.0%
TCAAATGCTTCTGCACCACC+AGG + chr5_1:6777126-6777145 None:intergenic 50.0%
!! AGAAGTGATAGCGGCTCTGA+CGG - chr5_1:6777444-6777463 Msa0714160:intron 50.0%
TCAGCCCACCAATCAACAAC+TGG + chr5_1:6777504-6777523 None:intergenic 50.0%
CACATCGAATAACGTGTCCC+CGG + chr5_1:6778458-6778477 None:intergenic 50.0%
TCGATGTGGACACGGTTCAA+AGG - chr5_1:6778470-6778489 Msa0714160:intron 50.0%
GCGGTCCGATCTTCATTCAA+TGG + chr5_1:6779027-6779046 None:intergenic 50.0%
CACATGCAGCTCAAAACGAC+CGG - chr5_1:6779650-6779669 Msa0714160:intron 50.0%
!! CAACGGTTTGGACTGGTAAC+CGG + chr5_1:6779672-6779691 None:intergenic 50.0%
! ACTTGGACAACGGTTTGGAC+TGG + chr5_1:6779679-6779698 None:intergenic 50.0%
CGACTTCGCGATGCAATGAA+TGG - chr5_1:6779718-6779737 Msa0714160:intron 50.0%
!! GAGTGTCGTCGATTCTTGCT+TGG + chr5_1:6780105-6780124 None:intergenic 50.0%
GGATTGCATTGCAACCTTGC+TGG - chr5_1:6780283-6780302 Msa0714160:five_prime_UTR 50.0%
!! GTACTTGCCATGGTGGATCG+TGG - chr5_1:6776390-6776409 Msa0714160:CDS 55.0%
GTCTAGACCACGATCCACCA+TGG + chr5_1:6776400-6776419 None:intergenic 55.0%
CGGGGACACGTTATTCGATG+TGG - chr5_1:6778456-6778475 Msa0714160:intron 55.0%
GGGATTCGGATACCTCTCGT+GGG - chr5_1:6779147-6779166 Msa0714160:CDS 55.0%
GGGGATTCGGATACCTCTCG+TGG - chr5_1:6779146-6779165 Msa0714160:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 6776058 6780419 6776058 ID=Msa0714160;Name=Msa0714160
chr5_1 mRNA 6776058 6780419 6776058 ID=Msa0714160-mRNA-1;Parent=Msa0714160;Name=Msa0714160-mRNA-1;_AED=0.02;_eAED=0.02;_QI=341|1|1|1|1|1|5|285|630
chr5_1 exon 6776058 6776909 6776058 ID=Msa0714160-mRNA-1:exon:2812;Parent=Msa0714160-mRNA-1
chr5_1 exon 6777739 6778275 6777739 ID=Msa0714160-mRNA-1:exon:2811;Parent=Msa0714160-mRNA-1
chr5_1 exon 6778827 6779444 6778827 ID=Msa0714160-mRNA-1:exon:2810;Parent=Msa0714160-mRNA-1
chr5_1 exon 6779777 6779846 6779777 ID=Msa0714160-mRNA-1:exon:2809;Parent=Msa0714160-mRNA-1
chr5_1 exon 6779978 6780419 6779978 ID=Msa0714160-mRNA-1:exon:2808;Parent=Msa0714160-mRNA-1
chr5_1 five_prime_UTR 6780079 6780419 6780079 ID=Msa0714160-mRNA-1:five_prime_utr;Parent=Msa0714160-mRNA-1
chr5_1 CDS 6779978 6780078 6779978 ID=Msa0714160-mRNA-1:cds;Parent=Msa0714160-mRNA-1
chr5_1 CDS 6779777 6779846 6779777 ID=Msa0714160-mRNA-1:cds;Parent=Msa0714160-mRNA-1
chr5_1 CDS 6778827 6779444 6778827 ID=Msa0714160-mRNA-1:cds;Parent=Msa0714160-mRNA-1
chr5_1 CDS 6777739 6778275 6777739 ID=Msa0714160-mRNA-1:cds;Parent=Msa0714160-mRNA-1
chr5_1 CDS 6776343 6776909 6776343 ID=Msa0714160-mRNA-1:cds;Parent=Msa0714160-mRNA-1
chr5_1 three_prime_UTR 6776058 6776342 6776058 ID=Msa0714160-mRNA-1:three_prime_utr;Parent=Msa0714160-mRNA-1
Gene Sequence

>Msa0714160

ATGGTGGATCGTGGTCTAGACAAAACTACAACATCTGCTAGTGACTTGTCTCTGAAGAAGCAAGAGCTTCTATCTAGTGCTATGAAAAGAACAAGTGACTGGATTTTTTCTCAGGAGATTCCAAGTGATGTCAATGTCCAAATTGGAGAATCTTCCTTTACTTTACATAAGTATCCATTAGTCTCCAAGTGTGGATACATTCGGAAACTCGTCTCAGAATCTAATGACTCCGACGTGTCCTTCGTTGAACTCTCTGATGTTCCTGGTGGTGCAGAAGCATTTGAACTAGCAGCAAAATTCTGCTACGGTATAAATTTCGAGATAAATGTGGAAAACATCGCTATGCTTAGATGTGTGGCCGAATATCTTGAGATGACAGAAGATTATTCAGTTGGGAACTTGGTGGCAAGAACTGATGCATATTTGAATGATGTAGCACTAAAAACAATTGCAGGTTCTGTTTCAATCTTACATATTTCAGAAAGCCTTCTTCCAATAGCAGAGAAAACAAAATTGGTGAGCAAATGCATAGATGCAATTGCTTATATTGCTTGCAAGGAAAGTCAATTGTGTTCATCTGTAAGAAGTGATAGCGGCTCTGACGGAGTGATGTCATCTTCTGTGTCATCTCAACAGAGACCAGTTGTTGATTGGTGGGCTGAAGATCTAACTGTTCTTAGAATCGACCTTTTTCAAAGAGTTCTTATAGCAATGATGGCTAGAGGGTTTAAACAGTTTGCTATTGGTCCTATTCTAATGCTCTATGCACAGAAATCTCTACGAGGTTTGGATATATTTGGAAAGGGAAGGAAGAAGATTGAACCAAGACAAGAGCATGAAAAAAGGGTTATTTTAGAGACAATAGTGAGCCTATTACCAAAAGAGAAGAATGCAATGTCAGTAAGCTTTCTATCGATGCTGCTTCGTGCAGCAATATATCTTGATACAACAGTTGCTTGCAGGCTTGATTTGGAGAAAAGAATGGCAATGCAATTAGGACAAGCTGTCTTAGATGATCTTCTCATTCCTTCGTATTCATTTACCGGGGACACGTTATTCGATGTGGACACGGTTCAAAGGATCATGAATAATTACCAAGAATCTCAAATTGGAAACCACTTTGTCTATAATGGTGATGATGAATATTTTTCTCCACCACAAAGTGATATTGAACGGGTTGGAAAGCTAATGGAAAACTATCTTGCTGAAATAGCCACTGACAGAAATTTATCAGTTGCAAAGTTCATCAGTCTAGCTGAATTGATTCCTGAACAATCAAAACCTACAGAAGATGGGATGTATAGAGCCTTAGACATCTATTTAAAGGCTCATCCCAATTTAAGTGACATGGAGAGAAAGAAAGTTTGCAGCATAATGGACTGTCAAAGACTATCACGAGAAGCATGTGCACATGCAGCTCAAAACGACCGGTTACCAGTCCAAACCGTTGTCCAAGTTCTCTATTACGAACAGCAACGACTTCGCGATGCAATGAATGGAAGTGAAACTGCAGAATCACCTTCTATTCACACCAAACTAAATGTATATTCAGGTGATATTCAAGTTTCAAATGAACTCACAAGCTTACGAAGAGAAAATGAAGACCTCAAATTAGAGGTAGTGAAGTTGAAAATGAAACTAAAAGAGATCGAGATTTCCACGCTTAAATCAACTGTTAAATCAACGGTAAAATCAACGGTTAATAGTCCTATTGCAAATGCTTCACCTTCTCATTCTCATTCTGCTGATAAGCCTCCACTACCTCGAAAATCATTTATAAGTTCGGTTTCAAAGAAACTTGGGAAGCTTTCTCCTTTTCCACGTTTGGATGGTATTGTTACTGCTAAAGGTAGGACAAAACCAAGCAAGAATCGACGACACTCTATTTCCTAA
Protein sequence

>Msa0714160

MVDRGLDKTTTSASDLSLKKQELLSSAMKRTSDWIFSQEIPSDVNVQIGESSFTLHKYPLVSKCGYIRKLVSESNDSDVSFVELSDVPGGAEAFELAAKFCYGINFEINVENIAMLRCVAEYLEMTEDYSVGNLVARTDAYLNDVALKTIAGSVSILHISESLLPIAEKTKLVSKCIDAIAYIACKESQLCSSVRSDSGSDGVMSSSVSSQQRPVVDWWAEDLTVLRIDLFQRVLIAMMARGFKQFAIGPILMLYAQKSLRGLDIFGKGRKKIEPRQEHEKRVILETIVSLLPKEKNAMSVSFLSMLLRAAIYLDTTVACRLDLEKRMAMQLGQAVLDDLLIPSYSFTGDTLFDVDTVQRIMNNYQESQIGNHFVYNGDDEYFSPPQSDIERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSKPTEDGMYRALDIYLKAHPNLSDMERKKVCSIMDCQRLSREACAHAAQNDRLPVQTVVQVLYYEQQRLRDAMNGSETAESPSIHTKLNVYSGDIQVSNELTSLRRENEDLKLEVVKLKMKLKEIEISTLKSTVKSTVKSTVNSPIANASPSHSHSADKPPLPRKSFISSVSKKLGKLSPFPRLDGIVTAKGRTKPSKNRRHSIS*