AlfalfaGEDB | Msa0618260

M. sativa cultivar zhongmu-4 / Msa0618260

KEGG: K00972
GO: -
PFAM: PF01782.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0618260	XP_003629892.2	95.173	663	20	4	1	657	1	657	0.0	1276

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0618260	sp\|A5GI62\|RIMM_SYNPW	40.206	194	92	5	67	260	6	175	3.09e-39	145

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0618260	0.833699	4.589329e-56	-8.615850e-47
Msa0000220	Msa0618260	0.874327	7.367053e-68	-8.615850e-47
Msa0000500	Msa0618260	0.821558	3.788184e-53	-8.615850e-47
Msa0001040	Msa0618260	0.806259	8.971269e-50	-8.615850e-47
Msa0001460	Msa0618260	0.817773	2.771824e-52	-8.615850e-47
Msa0004340	Msa0618260	0.845663	3.529334e-59	-8.615850e-47
Msa0005160	Msa0618260	0.828386	9.251710e-55	-8.615850e-47
Msa0005690	Msa0618260	0.865220	6.914315e-65	-8.615850e-47
Msa0006050	Msa0618260	0.831611	1.513154e-55	-8.615850e-47
Msa0006700	Msa0618260	0.834807	2.420940e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0618260	MtrunA17_Chr8g0380151	95.173	663	20	4	1	657	1	657	0.0	1276

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0618260	AT5G46420.1	46.177	667	314	11	8	655	11	651	0.0	575

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Find 141 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGCCTCCAAGCGAAGT+AGG	0.535540	4_2:+69171188	None:intergenic
AAATGCATGTCCGTTGGATA+AGG	0.395274	4_2:-69164653	Msa0618260:CDS
AAATTCACTACTTGTTGGGT+TGG	0.511864	4_2:-69164920	Msa0618260:CDS
AAATTGAGCTTGAAGAAGGT+AGG	0.587798	4_2:-69170899	Msa0618260:CDS
AACAACAACAGGTTCGCGGT+GGG	0.657439	4_2:+69171091	None:intergenic
AACACTCTGGACAAAATTGT+TGG	0.474118	4_2:-69170875	Msa0618260:CDS
AACTCCAAAAGTCCCTTGGG+CGG	0.640296	4_2:+69169040	None:intergenic
AACTGGAAGTAAAACCAAGT+TGG	0.577834	4_2:-69167476	Msa0618260:CDS
AAGATAGCTCGTATGAGTTT+GGG	0.348468	4_2:+69164695	None:intergenic
AAGTGCCTCCAAGCGAAGTA+GGG	0.549319	4_2:+69171189	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGGAGAAAAAGGTTTGAAA+CGG	+	chr4_2:69164616-69164635	None:intergenic	30.0%
TTGACTATATTACAAGCAAG+TGG	+	chr4_2:69165027-69165046	None:intergenic	30.0%
GTTGAAAAATACCTTATGGA+TGG	-	chr4_2:69165087-69165106	Msa0618260:intron	30.0%
TCAAAGTAGTCAATACAAAC+TGG	-	chr4_2:69165177-69165196	Msa0618260:intron	30.0%
CAAAGTAGTCAATACAAACT+GGG	-	chr4_2:69165178-69165197	Msa0618260:intron	30.0%
ATATGGGGAAAACCAAAAAA+GGG	+	chr4_2:69165538-69165557	None:intergenic	30.0%
AATATGGGGAAAACCAAAAA+AGG	+	chr4_2:69165539-69165558	None:intergenic	30.0%
GAGCTATTCATTATGATTTC+AGG	+	chr4_2:69165569-69165588	None:intergenic	30.0%
ATACGTTAATTCGAGAAAGA+GGG	-	chr4_2:69165631-69165650	Msa0618260:intron	30.0%
TCATATGATCAAACAGACAA+TGG	+	chr4_2:69165839-69165858	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	69164469	69171328	69164469	ID=Msa0618260;Name=Msa0618260
chr4_2	mRNA	69164469	69171328	69164469	ID=Msa0618260-mRNA-1;Parent=Msa0618260;Name=Msa0618260-mRNA-1;_AED=0.02;_eAED=0.02;_QI=61\|1\|1\|1\|1\|1\|8\|158\|657
chr4_2	exon	69164469	69164974	69164469	ID=Msa0618260-mRNA-1:exon:19946;Parent=Msa0618260-mRNA-1
chr4_2	exon	69165707	69165898	69165707	ID=Msa0618260-mRNA-1:exon:19945;Parent=Msa0618260-mRNA-1
chr4_2	exon	69166753	69166863	69166753	ID=Msa0618260-mRNA-1:exon:19944;Parent=Msa0618260-mRNA-1
chr4_2	exon	69167279	69167576	69167279	ID=Msa0618260-mRNA-1:exon:19943;Parent=Msa0618260-mRNA-1
chr4_2	exon	69168226	69168425	69168226	ID=Msa0618260-mRNA-1:exon:19942;Parent=Msa0618260-mRNA-1
chr4_2	exon	69168994	69169278	69168994	ID=Msa0618260-mRNA-1:exon:19941;Parent=Msa0618260-mRNA-1
chr4_2	exon	69169781	69169891	69169781	ID=Msa0618260-mRNA-1:exon:19940;Parent=Msa0618260-mRNA-1
chr4_2	exon	69170839	69171328	69170839	ID=Msa0618260-mRNA-1:exon:19939;Parent=Msa0618260-mRNA-1
chr4_2	five_prime_UTR	69171268	69171328	69171268	ID=Msa0618260-mRNA-1:five_prime_utr;Parent=Msa0618260-mRNA-1
chr4_2	CDS	69170839	69171267	69170839	ID=Msa0618260-mRNA-1:cds;Parent=Msa0618260-mRNA-1
chr4_2	CDS	69169781	69169891	69169781	ID=Msa0618260-mRNA-1:cds;Parent=Msa0618260-mRNA-1
chr4_2	CDS	69168994	69169278	69168994	ID=Msa0618260-mRNA-1:cds;Parent=Msa0618260-mRNA-1
chr4_2	CDS	69168226	69168425	69168226	ID=Msa0618260-mRNA-1:cds;Parent=Msa0618260-mRNA-1
chr4_2	CDS	69167279	69167576	69167279	ID=Msa0618260-mRNA-1:cds;Parent=Msa0618260-mRNA-1
chr4_2	CDS	69166753	69166863	69166753	ID=Msa0618260-mRNA-1:cds;Parent=Msa0618260-mRNA-1
chr4_2	CDS	69165707	69165898	69165707	ID=Msa0618260-mRNA-1:cds;Parent=Msa0618260-mRNA-1
chr4_2	CDS	69164627	69164974	69164627	ID=Msa0618260-mRNA-1:cds;Parent=Msa0618260-mRNA-1
chr4_2	three_prime_UTR	69164469	69164626	69164469	ID=Msa0618260-mRNA-1:three_prime_utr;Parent=Msa0618260-mRNA-1

Gene Sequence

>Msa0618260

ATGCAGATACCAAACACTTTCACAACAATCTCTCAACGCCCATTTCTCACTCTTATCCCTACTTCGCTTGGAGGCACTTTCCACCGTTTCAAACCTTTTTCTCCAACCAAACACTTCCCTATTCATTTCCACCCCCTTAAAGCAGCTACAACTACCCACCGCGAACCTGTTGTTGTTGTTGTTGACAATGAACCGCGATTCGTTGATATTGGTTATGTATCCGGTGTTCACGGTTTTCAAGGCGATGTTCGTGTTAAGCCTAACACTGATTTTCCTGAACTCAGATTTTCCACGCCTGGGAGAAGATGGTTGAAGCAGATGGTTATGGGTGGAGAAAGCGTTCAGGAAATTGAGCTTGAAGAAGGTAGGGAACACTCTGGACAAAATTGTTGGATACTCAAATTCACAGGAATTGATTCTGCGGAGGAGGCTAAGATGCTTATTGGTGCTACCTTGCTTGTGACGGAAGAAGACAAGCCTGAACTCGAAGAGGGTGAATTTTACACACATGATCTCAATGGGATGCGAGTTTTTATGAAGGAAAATGGAAAACTTTTGGGAACAGTTATTAATGTTTTCAACAATGGAGCAAATGATCTACTTCAAATTTCACTTGATTCATCCTTTGATGTGCTTGATAAAAATGGCAAGCCAAAGCCAGAAGAAATAGAAGCATCTGGTCAGCTTGTTTTGGTACCTTTTGTTGAAGCAATTGTTCCAGATGTTGATATGAATAGAAGAGAAATGCATATTACTCCGCCCAAGGGACTTTTGGAGTTAAACTTACGATTTGATGATAGGTCCAAAAAAGAAAGACGCCAACTTGAATGGAAAGAAAGGAAAAAGTTCCAAAAGCGTCTCATAGCAGCAAAAAAGAAACTCTGTGAAATGGATCAACAACATGTCTTTCATGGATTTCAATGCGGAGAGAAAGAACAATGGAGCTTGCTTAGCGATCAGATTGTTGGTGTAAACTCCAGATTACTTCAGGATGCCTTACAAAGTCTTGAACAACCAGCCAACAGATGGAATGCAGCTGAGTTGGTCAGTGCCATGGAAGAAAAGCGTATACGTACTGTACAAATATCTGAAAAGTCTCTCCTAACTGGAAGTAAAACCAAGTTGGTTAGGAATATCATCAATATGAAAGAGAAGGGAGTTGAGCTAATTTCTAATGGCAAAATGGCTATTGTCTTGCTATTGAAAGAAAAAGAGAATGAAGGATGCATTTATGATCCTGAAGTTGTTGAAAATGAAGCAACTGAAACTTCAACACTACGCATGCTTCAAAACTTACTCTCTGATCATGAAAAGTTTGTAAAGGTTAACGATCGTGTATCTGTTCCTTTAATTTTGGTTTCCTCGGCCCAACAAATCCAGTCTTTAAGAAATCTCTTTACAAGGAACAATCACTTCGCGTTCGACTCTGAAAAGGTATGGTTTTTGGAAGAAGAGAAGCTTCCAGTTGTCAGCAGTTCACTAGAAGGACAAAACAAATACAAGATTTTAATGAAGTCGCCTTGGGAAATACTCCAATCTCCTGTTGGATCAGGAGGATTTATTAGCTTGTTTTCAAAACATGGCATTACAGATAATCTGATTAACATGGGTGTTGAGTACCTTGAGTTATGTTGTCCATGTGAAAGAAGTGTTGGTGGAAATTCACTACTTGTTGGGTTGGTTGATTCGCGGGAAGCCAAAATTGGGATACAGATTACATCTACAATAGCTGATCCAGATGAAAATTTGGACATGATATTGTCGATGGAATTTGTAAAGAAGCTAACGAAGCAGAGCTACAAACTTCGATTTGATGCAACCGCCAAGACAAATTCCTTTATTGAGAGTGTTGATAAAGACTGGGTTACCGTTACCTCGTCCACCCCAAACTCATACGAGCTATCTTGTAGTGTATATAGTTCCTTAAATGCATGTCCGTTGGATAAGGTTTGTATAGTAGAGGTTAGAGAATAA

Protein sequence

>Msa0618260

MQIPNTFTTISQRPFLTLIPTSLGGTFHRFKPFSPTKHFPIHFHPLKAATTTHREPVVVVVDNEPRFVDIGYVSGVHGFQGDVRVKPNTDFPELRFSTPGRRWLKQMVMGGESVQEIELEEGREHSGQNCWILKFTGIDSAEEAKMLIGATLLVTEEDKPELEEGEFYTHDLNGMRVFMKENGKLLGTVINVFNNGANDLLQISLDSSFDVLDKNGKPKPEEIEASGQLVLVPFVEAIVPDVDMNRREMHITPPKGLLELNLRFDDRSKKERRQLEWKERKKFQKRLIAAKKKLCEMDQQHVFHGFQCGEKEQWSLLSDQIVGVNSRLLQDALQSLEQPANRWNAAELVSAMEEKRIRTVQISEKSLLTGSKTKLVRNIINMKEKGVELISNGKMAIVLLLKEKENEGCIYDPEVVENEATETSTLRMLQNLLSDHEKFVKVNDRVSVPLILVSSAQQIQSLRNLFTRNNHFAFDSEKVWFLEEEKLPVVSSSLEGQNKYKILMKSPWEILQSPVGSGGFISLFSKHGITDNLINMGVEYLELCCPCERSVGGNSLLVGLVDSREAKIGIQITSTIADPDENLDMILSMEFVKKLTKQSYKLRFDATAKTNSFIESVDKDWVTVTSSTPNSYELSCSVYSSLNACPLDKVCIVEVRE*