Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457220 | XP_003607208.1 | 89.394 | 264 | 2 | 1 | 1 | 238 | 2 | 265 | 2.10e-161 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457220 | sp|B7FNA9|DRE2_MEDTR | 89.394 | 264 | 2 | 1 | 1 | 238 | 2 | 265 | 2.62e-164 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457220 | G7JNG4 | 89.394 | 264 | 2 | 1 | 1 | 238 | 2 | 265 | 1.00e-161 | 457 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008200 | Msa1457220 | 0.812876 | 3.399638e-51 | -8.615850e-47 |
| Msa0010490 | Msa1457220 | 0.813674 | 2.271475e-51 | -8.615850e-47 |
| Msa0010500 | Msa1457220 | 0.801408 | 9.133003e-49 | -8.615850e-47 |
| Msa0020390 | Msa1457220 | 0.850159 | 2.033020e-60 | -8.615850e-47 |
| Msa0049390 | Msa1457220 | 0.801227 | 9.943842e-49 | -8.615850e-47 |
| Msa0065650 | Msa1457220 | 0.800484 | 1.410594e-48 | -8.615850e-47 |
| Msa0068020 | Msa1457220 | 0.803042 | 4.209430e-49 | -8.615850e-47 |
| Msa0090550 | Msa1457220 | 0.834297 | 3.251205e-56 | -8.615850e-47 |
| Msa0118540 | Msa1457220 | 0.801547 | 8.551002e-49 | -8.615850e-47 |
| Msa1351540 | Msa1457220 | 0.837753 | 4.315893e-57 | -8.615850e-47 |
| Msa1390680 | Msa1457220 | 0.802395 | 5.726712e-49 | -8.615850e-47 |
| Msa1392890 | Msa1457220 | 0.801538 | 8.589973e-49 | -8.615850e-47 |
| Msa1411950 | Msa1457220 | 0.800486 | 1.409348e-48 | -8.615850e-47 |
| Msa1446080 | Msa1457220 | 0.812262 | 4.632627e-51 | -8.615850e-47 |
| Msa1447890 | Msa1457220 | 0.800925 | 1.146409e-48 | -8.615850e-47 |
| Msa1450720 | Msa1457220 | 0.811529 | 6.690585e-51 | -8.615850e-47 |
| Msa1454680 | Msa1457220 | 0.818434 | 1.963942e-52 | -8.615850e-47 |
| Msa0603570 | Msa1457220 | 0.804557 | 2.039714e-49 | -8.615850e-47 |
| Msa0604290 | Msa1457220 | 0.818386 | 2.013595e-52 | -8.615850e-47 |
| Msa0615490 | Msa1457220 | 0.806487 | 8.032402e-50 | -8.615850e-47 |
| Msa0615580 | Msa1457220 | 0.839712 | 1.345093e-57 | -8.615850e-47 |
| Msa0629240 | Msa1457220 | 0.813508 | 2.470650e-51 | -8.615850e-47 |
| Msa0679360 | Msa1457220 | 0.801663 | 8.095713e-49 | -8.615850e-47 |
| Msa0687230 | Msa1457220 | 0.842476 | 2.526194e-58 | -8.615850e-47 |
| Msa0689440 | Msa1457220 | 0.818811 | 1.613231e-52 | -8.615850e-47 |
| Msa0694990 | Msa1457220 | 0.813816 | 2.113604e-51 | -8.615850e-47 |
| Msa0699190 | Msa1457220 | 0.818045 | 2.405433e-52 | -8.615850e-47 |
| Msa0702150 | Msa1457220 | 0.811299 | 7.503423e-51 | -8.615850e-47 |
| Msa0702270 | Msa1457220 | 0.810765 | 9.796867e-51 | -8.615850e-47 |
| Msa0746170 | Msa1457220 | 0.804987 | 1.659113e-49 | -8.615850e-47 |
| Msa0746210 | Msa1457220 | 0.810027 | 1.413346e-50 | -8.615850e-47 |
| Msa0751010 | Msa1457220 | 0.802627 | 5.129305e-49 | -8.615850e-47 |
| Msa0752700 | Msa1457220 | 0.808034 | 3.776828e-50 | -8.615850e-47 |
| Msa0792780 | Msa1457220 | 0.802390 | 5.739333e-49 | -8.615850e-47 |
| Msa0818770 | Msa1457220 | 0.805793 | 1.124428e-49 | -8.615850e-47 |
| Msa0826150 | Msa1457220 | 0.834770 | 2.473892e-56 | -8.615850e-47 |
| Msa0831100 | Msa1457220 | 0.817437 | 3.299660e-52 | -8.615850e-47 |
| Msa0149440 | Msa1457220 | 0.815322 | 9.809620e-52 | -8.615850e-47 |
| Msa0183870 | Msa1457220 | 0.879078 | 1.671551e-69 | -8.615850e-47 |
| Msa0223330 | Msa1457220 | 0.801119 | 1.046397e-48 | -8.615850e-47 |
| Msa0233370 | Msa1457220 | 0.802127 | 6.502046e-49 | -8.615850e-47 |
| Msa1276970 | Msa1457220 | 0.811289 | 7.540985e-51 | -8.615850e-47 |
| Msa1296830 | Msa1457220 | 0.824114 | 9.615998e-54 | -8.615850e-47 |
| Msa1299700 | Msa1457220 | 0.800876 | 1.173200e-48 | -8.615850e-47 |
| Msa1303580 | Msa1457220 | 0.813043 | 3.126042e-51 | -8.615850e-47 |
| Msa1307180 | Msa1457220 | 0.817239 | 3.655739e-52 | -8.615850e-47 |
| Msa1316360 | Msa1457220 | 0.808317 | 3.286686e-50 | -8.615850e-47 |
| Msa1336040 | Msa1457220 | 0.800750 | 1.244754e-48 | -8.615850e-47 |
| Msa0365860 | Msa1457220 | 0.812738 | 3.644550e-51 | -8.615850e-47 |
| Msa0382370 | Msa1457220 | 0.831618 | 1.506957e-55 | -8.615850e-47 |
| Msa0385500 | Msa1457220 | 0.829229 | 5.785035e-55 | -8.615850e-47 |
| Msa0389510 | Msa1457220 | 0.804280 | 2.329796e-49 | -8.615850e-47 |
| Msa0432160 | Msa1457220 | 0.803773 | 2.970729e-49 | -8.615850e-47 |
| Msa0450400 | Msa1457220 | -0.800798 | 1.217069e-48 | -8.615850e-47 |
| Msa0450480 | Msa1457220 | 0.824457 | 7.988688e-54 | -8.615850e-47 |
| Msa0450930 | Msa1457220 | 0.833681 | 4.636829e-56 | -8.615850e-47 |
| Msa0458640 | Msa1457220 | 0.817899 | 2.595505e-52 | -8.615850e-47 |
| Msa0476680 | Msa1457220 | 0.803453 | 3.461201e-49 | -8.615850e-47 |
| Msa1060260 | Msa1457220 | 0.815863 | 7.435187e-52 | -8.615850e-47 |
| Msa1070390 | Msa1457220 | 0.804292 | 2.317166e-49 | -8.615850e-47 |
| Msa1080150 | Msa1457220 | 0.801249 | 9.843674e-49 | -8.615850e-47 |
| Msa0244970 | Msa1457220 | 0.816840 | 4.494419e-52 | -8.615850e-47 |
| Msa0244980 | Msa1457220 | 0.800083 | 1.702347e-48 | -8.615850e-47 |
| Msa0247060 | Msa1457220 | 0.803165 | 3.971494e-49 | -8.615850e-47 |
| Msa0257490 | Msa1457220 | 0.836663 | 8.203276e-57 | -8.615850e-47 |
| Msa0259230 | Msa1457220 | 0.800257 | 1.568810e-48 | -8.615850e-47 |
| Msa0281530 | Msa1457220 | 0.824691 | 7.035807e-54 | -8.615850e-47 |
| Msa0296790 | Msa1457220 | 0.839635 | 1.408441e-57 | -8.615850e-47 |
| Msa0296920 | Msa1457220 | 0.806277 | 8.895789e-50 | -8.615850e-47 |
| Msa0320590 | Msa1457220 | 0.841908 | 3.571354e-58 | -8.615850e-47 |
| Msa0321690 | Msa1457220 | 0.836442 | 9.335115e-57 | -8.615850e-47 |
| Msa0336300 | Msa1457220 | 0.805476 | 1.310726e-49 | -8.615850e-47 |
| Msa1123350 | Msa1457220 | 0.807405 | 5.136346e-50 | -8.615850e-47 |
| Msa1126500 | Msa1457220 | 0.826460 | 2.680436e-54 | -8.615850e-47 |
| Msa1130400 | Msa1457220 | 0.810244 | 1.269294e-50 | -8.615850e-47 |
| Msa1165780 | Msa1457220 | 0.822601 | 2.171382e-53 | -8.615850e-47 |
| Msa1201810 | Msa1457220 | 0.803758 | 2.991992e-49 | -8.615850e-47 |
| Msa1205480 | Msa1457220 | 0.801676 | 8.047692e-49 | -8.615850e-47 |
| Msa1206650 | Msa1457220 | 0.800579 | 1.349031e-48 | -8.615850e-47 |
| Msa1211830 | Msa1457220 | 0.838835 | 2.270755e-57 | -8.615850e-47 |
| Msa0491000 | Msa1457220 | 0.810177 | 1.312062e-50 | -8.615850e-47 |
| Msa0521010 | Msa1457220 | 0.802560 | 5.294502e-49 | -8.615850e-47 |
| Msa0542560 | Msa1457220 | 0.815920 | 7.217787e-52 | -8.615850e-47 |
| Msa0547160 | Msa1457220 | 0.810147 | 1.331895e-50 | -8.615850e-47 |
| Msa0576730 | Msa1457220 | 0.812100 | 5.023386e-51 | -8.615850e-47 |
| Msa0580230 | Msa1457220 | 0.803134 | 4.029097e-49 | -8.615850e-47 |
| Msa0883520 | Msa1457220 | 0.803274 | 3.769420e-49 | -8.615850e-47 |
| Msa0892640 | Msa1457220 | 0.830341 | 3.101059e-55 | -8.615850e-47 |
| Msa0903780 | Msa1457220 | 0.805499 | 1.296010e-49 | -8.615850e-47 |
| Msa0905990 | Msa1457220 | 0.822298 | 2.553018e-53 | -8.615850e-47 |
| Msa0933380 | Msa1457220 | 0.815535 | 8.795130e-52 | -8.615850e-47 |
| Msa0944200 | Msa1457220 | 0.800307 | 1.532647e-48 | -8.615850e-47 |
| Msa0971160 | Msa1457220 | 0.823167 | 1.602136e-53 | -8.615850e-47 |
| Msa0974950 | Msa1457220 | 0.820871 | 5.453882e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457220 | MtrunA17_Chr4g0037921 | 89.394 | 264 | 2 | 1 | 1 | 238 | 2 | 265 | 1.93e-165 | 457 |
| Msa1457220 | MtrunA17_Chr4g0060301 | 87.059 | 255 | 7 | 1 | 1 | 229 | 2 | 256 | 2.03e-154 | 429 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457220 | AT5G18400.3 | 51.812 | 276 | 90 | 5 | 1 | 238 | 2 | 272 | 3.64e-73 | 224 |
| Msa1457220 | AT5G18400.2 | 51.812 | 276 | 90 | 5 | 1 | 238 | 2 | 272 | 3.64e-73 | 224 |
| Msa1457220 | AT5G18400.1 | 52.788 | 269 | 84 | 5 | 8 | 238 | 6 | 269 | 5.53e-73 | 223 |
Find 68 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGAAAACAAGTTATTAT+TGG | 0.250596 | tig0038559:-12464 | Msa1457220:CDS |
| TTTGGTCTACAGTGTGGGTT+AGG | 0.251749 | tig0038559:-10234 | Msa1457220:intron |
| GTTATGCTATCGTTCGTTTA+AGG | 0.255460 | tig0038559:-9945 | Msa1457220:three_prime_UTR |
| TCCCAATCTGCTGTGGGTTC+AGG | 0.274662 | tig0038559:-12583 | Msa1457220:CDS |
| GGGACTGCCTGCCTTCAAAA+TGG | 0.281970 | tig0038559:-10178 | Msa1457220:CDS |
| TGGCTGAATTTAAGATTTGT+AGG | 0.328966 | tig0038559:+9754 | None:intergenic |
| TCTTTACCAGATGGCAGTTC+AGG | 0.330853 | tig0038559:+11786 | None:intergenic |
| GAGGAGAAAGTGTTGAAGTT+AGG | 0.335111 | tig0038559:-11622 | Msa1457220:CDS |
| GACAACTAGTATATAATAAC+TGG | 0.358536 | tig0038559:+9873 | None:intergenic |
| AGATAGTAAGGGATTGTTAT+CGG | 0.361000 | tig0038559:-9967 | Msa1457220:three_prime_UTR |
| ACCTGAACCCACAGCAGATT+GGG | 0.367811 | tig0038559:+12582 | None:intergenic |
| GTGGGTTAGGGGATGCGTTT+AGG | 0.373430 | tig0038559:-10221 | Msa1457220:CDS |
| TCAAAATCAATTTGCACCTT+GGG | 0.380437 | tig0038559:+11861 | None:intergenic |
| GATAGAATTTATAGATAGTA+AGG | 0.393577 | tig0038559:-9979 | Msa1457220:three_prime_UTR |
| AATTACATGATTTATAGCTT+TGG | 0.395560 | tig0038559:+9734 | None:intergenic |
| GCAATAGGGGATTGTGAAAT+CGG | 0.416720 | tig0038559:-11694 | Msa1457220:intron |
| TTGGTCTACAGTGTGGGTTA+GGG | 0.418067 | tig0038559:-10233 | Msa1457220:intron |
| ATCAAAATCAATTTGCACCT+TGG | 0.418194 | tig0038559:+11860 | None:intergenic |
| AAGGCAGGCAGTCCCTTGTA+AGG | 0.430422 | tig0038559:+10186 | None:intergenic |
| GAAAACAAGTTATTATTGGC+AGG | 0.432138 | tig0038559:-12460 | Msa1457220:CDS |
| TGCTGTGGGTTCAGGTGATA+AGG | 0.434752 | tig0038559:-12575 | Msa1457220:intron |
| GTCTGCAGCAAGGAAGTTAC+CGG | 0.440596 | tig0038559:+10044 | None:intergenic |
| GTGCAGTACCTGCCCTTACA+AGG | 0.441245 | tig0038559:-10199 | Msa1457220:CDS |
| GGTTGAGAAATTGGATCCTC+TGG | 0.453715 | tig0038559:-13655 | Msa1457220:intron |
| TTAAGGTGTTTGATTTGATA+CGG | 0.458662 | tig0038559:-9928 | Msa1457220:three_prime_UTR |
| CACCTGAACCCACAGCAGAT+TGG | 0.467479 | tig0038559:+12581 | None:intergenic |
| TTTGATGCGATTAGAGAGCT+TGG | 0.471851 | tig0038559:-13687 | Msa1457220:CDS |
| GGACTGCCTGCCTTCAAAAT+GGG | 0.476527 | tig0038559:-10177 | Msa1457220:CDS |
| ATTAGAGAGCTTGGGATTGA+GGG | 0.476921 | tig0038559:-13678 | Msa1457220:CDS |
| AAGAAACCTGAACTGCCATC+TGG | 0.477418 | tig0038559:-11792 | Msa1457220:intron |
| GATTAGAGAGCTTGGGATTG+AGG | 0.480462 | tig0038559:-13679 | Msa1457220:CDS |
| CGAATAAGAGTTGTCCCGCC+AGG | 0.482832 | tig0038559:+12613 | None:intergenic |
| TGGTCTACAGTGTGGGTTAG+GGG | 0.497622 | tig0038559:-10232 | Msa1457220:intron |
| CAAATCCTCCCAATCTGCTG+TGG | 0.503823 | tig0038559:-12590 | Msa1457220:CDS |
| TTGATGCGATTAGAGAGCTT+GGG | 0.504525 | tig0038559:-13686 | Msa1457220:CDS |
| GCATCAAACACTTGACTGAC+AGG | 0.506089 | tig0038559:+13702 | None:intergenic |
| ATTCAATTACATTAGTGCAC+TGG | 0.516614 | tig0038559:+9647 | None:intergenic |
| TGGTGCTGTGTTGGCATGTA+CGG | 0.526353 | tig0038559:-13739 | Msa1457220:CDS |
| TCTTGAGTCAGTTGGTCGAT+AGG | 0.526999 | tig0038559:+12655 | None:intergenic |
| ATGTGGAAGGGCAGAAGAAG+AGG | 0.536094 | tig0038559:-11641 | Msa1457220:CDS |
| TGAGGACTTCTTGAGTCAGT+TGG | 0.543701 | tig0038559:+12647 | None:intergenic |
| CAGGATGCTGCAAAGATGTA+TGG | 0.549895 | tig0038559:-13759 | Msa1457220:CDS |
| TAATGTTGTAACCTTTGTCG+TGG | 0.556107 | tig0038559:-10011 | Msa1457220:three_prime_UTR |
| AGGCAGTCCCTTGTAAGGGC+AGG | 0.558512 | tig0038559:+10191 | None:intergenic |
| TGCCTTCAAAATGGGAGAGA+AGG | 0.558584 | tig0038559:-10169 | Msa1457220:intron |
| TGTAACCTTTGTCGTGGGAA+TGG | 0.562127 | tig0038559:-10005 | Msa1457220:three_prime_UTR |
| AAATCCTCCCAATCTGCTGT+GGG | 0.570159 | tig0038559:-12589 | Msa1457220:CDS |
| TATGAAGTAGCTATAGAGAG+AGG | 0.572500 | tig0038559:+9841 | None:intergenic |
| ACACTGCCACAAGCTGATTG+AGG | 0.579233 | tig0038559:+11574 | None:intergenic |
| TGAAATCGGACCTACAAGAA+AGG | 0.582586 | tig0038559:-11680 | Msa1457220:CDS |
| ACAGGCTTTACAATCTTCTG+TGG | 0.583487 | tig0038559:-12425 | Msa1457220:intron |
| GTCCTCAGAGTGTTAAAACC+TGG | 0.589637 | tig0038559:-12631 | Msa1457220:CDS |
| ATAGAATTTATAGATAGTAA+GGG | 0.593569 | tig0038559:-9978 | Msa1457220:three_prime_UTR |
| TCAGAGTGTTAAAACCTGGC+GGG | 0.605789 | tig0038559:-12627 | Msa1457220:CDS |
| AATAATCCTCAATCAGCTTG+TGG | 0.606583 | tig0038559:-11580 | Msa1457220:CDS |
| AATGTTGTAACCTTTGTCGT+GGG | 0.607211 | tig0038559:-10010 | Msa1457220:three_prime_UTR |
| AAAGATGTATGGTGCTGTGT+TGG | 0.610093 | tig0038559:-13748 | Msa1457220:CDS |
| GTATATAATAACTGGAAACT+CGG | 0.615069 | tig0038559:+9881 | None:intergenic |
| TGAACCCACAGCAGATTGGG+AGG | 0.622299 | tig0038559:+12585 | None:intergenic |
| TAGAGAGCTTGGGATTGAGG+GGG | 0.627540 | tig0038559:-13676 | Msa1457220:CDS |
| TCATGCCATTCCCACGACAA+AGG | 0.629438 | tig0038559:+10000 | None:intergenic |
| TGCAGTACCTGCCCTTACAA+GGG | 0.630912 | tig0038559:-10198 | Msa1457220:CDS |
| TTAGAGAGCTTGGGATTGAG+GGG | 0.630912 | tig0038559:-13677 | Msa1457220:CDS |
| GGTTGTGAAAAGTTCACCCA+AGG | 0.638698 | tig0038559:-11877 | Msa1457220:CDS |
| AGGCAGGCAGTCCCTTGTAA+GGG | 0.644070 | tig0038559:+10187 | None:intergenic |
| TCTATCATATGTCTGCAGCA+AGG | 0.648889 | tig0038559:+10034 | None:intergenic |
| CTCAGAGTGTTAAAACCTGG+CGG | 0.660447 | tig0038559:-12628 | Msa1457220:CDS |
| GCTTACGATGCAGAAAACAA+AGG | 0.677893 | tig0038559:+9803 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTTAAGAAAAAACAA+CGG | + | tig0038559:11004-11023 | None:intergenic | 10.0% |
| !!! | TCAAATTATTTTTTCTATAA+TGG | - | tig0038559:13081-13100 | Msa1457220:intron | 10.0% |
| !! | TGAATATTATTAAACAAAAA+AGG | - | tig0038559:13652-13671 | Msa1457220:intron | 10.0% |
| !! | GAATATTATTAAACAAAAAA+GGG | - | tig0038559:13653-13672 | Msa1457220:intron | 10.0% |
| !!! | TTTGCATTAAATTTGTTTTA+TGG | - | tig0038559:9809-9828 | Msa1457220:three_prime_UTR | 15.0% |
| !!! | TTGCATTAAATTTGTTTTAT+GGG | - | tig0038559:9810-9829 | Msa1457220:three_prime_UTR | 15.0% |
| !!! | TAAAACAAAGTTGATTTATT+CGG | - | tig0038559:10490-10509 | Msa1457220:intron | 15.0% |
| !!! | TTACATGATTAATACTTTTA+AGG | + | tig0038559:11939-11958 | None:intergenic | 15.0% |
| !! | AAAAAAACATTATAACATCA+AGG | + | tig0038559:12141-12160 | None:intergenic | 15.0% |
| !!! | TTGATGTTATAATGTTTTTT+TGG | - | tig0038559:12140-12159 | Msa1457220:intron | 15.0% |
| !!! | ATAATTTGAAATAGCATTAA+CGG | + | tig0038559:13070-13089 | None:intergenic | 15.0% |
| !! | ATAGAATTTATAGATAGTAA+GGG | - | tig0038559:13381-13400 | Msa1457220:intron | 15.0% |
| !! | ATAATATGCACAATAATTGA+AGG | + | tig0038559:9768-9787 | None:intergenic | 20.0% |
| !! | TATTATGTGATGTGATATAA+TGG | - | tig0038559:9785-9804 | Msa1457220:three_prime_UTR | 20.0% |
| !!! | TGCATTAAATTTGTTTTATG+GGG | - | tig0038559:9811-9830 | Msa1457220:three_prime_UTR | 20.0% |
| !! | ATAATAAAACCCTAAAAGAT+GGG | + | tig0038559:9930-9949 | None:intergenic | 20.0% |
| !! | AATAATAAAACCCTAAAAGA+TGG | + | tig0038559:9931-9950 | None:intergenic | 20.0% |
| !!! | CTATTTTCTCAAAGTATTAT+TGG | + | tig0038559:10185-10204 | None:intergenic | 20.0% |
| !!! | ATTTTAATGTTTGAAGTTTG+TGG | - | tig0038559:10320-10339 | Msa1457220:intron | 20.0% |
| !!! | TTTTAATGTTTGAAGTTTGT+GGG | - | tig0038559:10321-10340 | Msa1457220:intron | 20.0% |
| !!! | TTTTTGCTTATATTCAAGAT+CGG | - | tig0038559:10554-10573 | Msa1457220:intron | 20.0% |
| !! | AAAAAATAGTCGGTAAAAAT+TGG | + | tig0038559:10608-10627 | None:intergenic | 20.0% |
| !! | TCTTGAAAACAAGTTATTAT+TGG | - | tig0038559:10895-10914 | Msa1457220:intron | 20.0% |
| !! | GTTAATAAGGAAAAAAAATC+TGG | + | tig0038559:11356-11375 | None:intergenic | 20.0% |
| !! | TATAATTAGAACTTGTAAGA+TGG | + | tig0038559:11389-11408 | None:intergenic | 20.0% |
| !!! | ATGGTAACATATTTAAGATT+TGG | + | tig0038559:12079-12098 | None:intergenic | 20.0% |
| !! | AAATCTTAAATATGTTACCA+TGG | - | tig0038559:12078-12097 | Msa1457220:intron | 20.0% |
| !!! | ATATACTTTTGATTTACATG+TGG | - | tig0038559:12820-12839 | Msa1457220:intron | 20.0% |
| !!! | AGAGTTCGTAATTTTTAAAT+GGG | - | tig0038559:12852-12871 | Msa1457220:intron | 20.0% |
| !!! | ATTTTATAGAAGATCTTCTA+AGG | - | tig0038559:12939-12958 | Msa1457220:intron | 20.0% |
| !! | AAAATAGACGAAACTATTAA+CGG | + | tig0038559:13035-13054 | None:intergenic | 20.0% |
| !! | GATAGAATTTATAGATAGTA+AGG | - | tig0038559:13380-13399 | Msa1457220:intron | 20.0% |
| !! | AATTACATGATTTATAGCTT+TGG | + | tig0038559:13628-13647 | None:intergenic | 20.0% |
| !! | AATTCACTCTATGCATTTTT+CGG | + | tig0038559:9979-9998 | None:intergenic | 25.0% |
| !! | TTTAATGTTTGAAGTTTGTG+GGG | - | tig0038559:10322-10341 | Msa1457220:intron | 25.0% |
| ! | TGAAGTTTGCAAAAAATAGT+CGG | + | tig0038559:10618-10637 | None:intergenic | 25.0% |
| !!! | AATAACTTGTTTTCAAGATC+AGG | + | tig0038559:10893-10912 | None:intergenic | 25.0% |
| ! | AAAACAACGGTTAATAAAGA+TGG | + | tig0038559:10991-11010 | None:intergenic | 25.0% |
| ! | ATAAGGAAAAAAAATCTGGA+TGG | + | tig0038559:11352-11371 | None:intergenic | 25.0% |
| !!! | TTAGTCTTATGTGTGATATT+TGG | - | tig0038559:11625-11644 | Msa1457220:CDS | 25.0% |
| !! | TTTTCGTTTAATCAATCTGT+TGG | - | tig0038559:11821-11840 | Msa1457220:CDS | 25.0% |
| ! | AAAAATTGGATGACACTATA+GGG | + | tig0038559:11848-11867 | None:intergenic | 25.0% |
| ! | TAAAAATTGGATGACACTAT+AGG | + | tig0038559:11849-11868 | None:intergenic | 25.0% |
| !! | TATTTTCAGCGTTAAAATTG+TGG | - | tig0038559:11907-11926 | Msa1457220:CDS | 25.0% |
| ! | ACATAGATATCAAGACTATT+TGG | - | tig0038559:12045-12064 | Msa1457220:intron | 25.0% |
| ! | AACCAGTTCAATTAATAGTA+TGG | - | tig0038559:12227-12246 | Msa1457220:intron | 25.0% |
| ! | AACCATACTATTAATTGAAC+TGG | + | tig0038559:12232-12251 | None:intergenic | 25.0% |
| ! | TATTTGCAAAGAAAGTAGTT+TGG | + | tig0038559:12343-12362 | None:intergenic | 25.0% |
| !! | CAGAGTTCGTAATTTTTAAA+TGG | - | tig0038559:12851-12870 | Msa1457220:intron | 25.0% |
| ! | CCTGCAAAAACAAAAAAAAA+TGG | + | tig0038559:13286-13305 | None:intergenic | 25.0% |
| !!! | CCATTTTTTTTTGTTTTTGC+AGG | - | tig0038559:13283-13302 | Msa1457220:intron | 25.0% |
| !!! | TTAAGGTGTTTGATTTGATA+CGG | - | tig0038559:13431-13450 | Msa1457220:intron | 25.0% |
| ! | GTATATAATAACTGGAAACT+CGG | + | tig0038559:13481-13500 | None:intergenic | 25.0% |
| ! | GACAACTAGTATATAATAAC+TGG | + | tig0038559:13489-13508 | None:intergenic | 25.0% |
| AGTGAATTAGTGTATCCTTT+AGG | - | tig0038559:9991-10010 | Msa1457220:three_prime_UTR | 30.0% | |
| ATTTCATCCAACATGAATCA+AGG | + | tig0038559:10067-10086 | None:intergenic | 30.0% | |
| TGCTGTTATATAGATGCTAA+TGG | - | tig0038559:10284-10303 | Msa1457220:intron | 30.0% | |
| ! | TTAATGTTTGAAGTTTGTGG+GGG | - | tig0038559:10323-10342 | Msa1457220:intron | 30.0% |
| !!! | GACTATTTTTTGCAAACTTC+AGG | - | tig0038559:10617-10636 | Msa1457220:intron | 30.0% |
| !!! | TGGATTTGGTTGTTTTAATC+TGG | - | tig0038559:10666-10685 | Msa1457220:intron | 30.0% |
| GAAAACAAGTTATTATTGGC+AGG | - | tig0038559:10899-10918 | Msa1457220:intron | 30.0% | |
| AACGGTTAATAAAGATGGTA+AGG | + | tig0038559:10986-11005 | None:intergenic | 30.0% | |
| AAAACCATTAACTACAGCAA+TGG | + | tig0038559:11211-11230 | None:intergenic | 30.0% | |
| !! | ATGGTTTTTCATTTTTGTGC+AGG | - | tig0038559:11223-11242 | Msa1457220:intron | 30.0% |
| ! | ATTTTCCTATTGCATTCAAG+TGG | - | tig0038559:11311-11330 | Msa1457220:intron | 30.0% |
| AAAAAGCCTTCATGGAAAAT+TGG | - | tig0038559:11438-11457 | Msa1457220:intron | 30.0% | |
| ! | TTCATCTTTTGCACTAAAGA+AGG | - | tig0038559:11461-11480 | Msa1457220:intron | 30.0% |
| TCAAAATCAATTTGCACCTT+GGG | + | tig0038559:11501-11520 | None:intergenic | 30.0% | |
| ATCAAAATCAATTTGCACCT+TGG | + | tig0038559:11502-11521 | None:intergenic | 30.0% | |
| TCACACATAAGACTAATAGA+GGG | + | tig0038559:11621-11640 | None:intergenic | 30.0% | |
| ATCACACATAAGACTAATAG+AGG | + | tig0038559:11622-11641 | None:intergenic | 30.0% | |
| !!! | CGGCTATTTGAACATTTTTT+CGG | + | tig0038559:11967-11986 | None:intergenic | 30.0% |
| ATGTTGTCAATTCCAAATAG+CGG | + | tig0038559:12029-12048 | None:intergenic | 30.0% | |
| !! | ATAGGTAATTTTGGCAATTG+AGG | + | tig0038559:12308-12327 | None:intergenic | 30.0% |
| ! | TGGAGTTTGATAGGTAATTT+TGG | + | tig0038559:12317-12336 | None:intergenic | 30.0% |
| TGTTCCTTTGTCAAAATTCA+AGG | - | tig0038559:12404-12423 | Msa1457220:intron | 30.0% | |
| CAATACTTCATCAGTTGATT+CGG | - | tig0038559:12563-12582 | Msa1457220:intron | 30.0% | |
| !! | AAGCTTTATTAGTCATTCTG+TGG | + | tig0038559:12763-12782 | None:intergenic | 30.0% |
| ! | TTTGATTTACATGTGGATTC+TGG | - | tig0038559:12827-12846 | Msa1457220:intron | 30.0% |
| TTGATTTACATGTGGATTCT+GGG | - | tig0038559:12828-12847 | Msa1457220:intron | 30.0% | |
| CAGAGTTTAAATTAAGCTTC+TGG | - | tig0038559:12875-12894 | Msa1457220:intron | 30.0% | |
| AAGACAAACTTTCAGAACAA+TGG | + | tig0038559:13107-13126 | None:intergenic | 30.0% | |
| !! | TTGTTCTGAAAGTTTGTCTT+TGG | - | tig0038559:13107-13126 | Msa1457220:intron | 30.0% |
| AAATGGATAAGTTATGCAAC+AGG | + | tig0038559:13269-13288 | None:intergenic | 30.0% | |
| AGATAGTAAGGGATTGTTAT+CGG | - | tig0038559:13392-13411 | Msa1457220:intron | 30.0% | |
| ! | TGGCTGAATTTAAGATTTGT+AGG | + | tig0038559:13608-13627 | None:intergenic | 30.0% |
| TTAAACAAAAAAGGGCAATC+AGG | - | tig0038559:13661-13680 | Msa1457220:CDS | 30.0% | |
| ATTCAATTACATTAGTGCAC+TGG | + | tig0038559:13715-13734 | None:intergenic | 30.0% | |
| ATGCACAATAATTGAAGGAG+AGG | + | tig0038559:9763-9782 | None:intergenic | 35.0% | |
| ! | GCAATAGAAACACGTAGTTT+TGG | + | tig0038559:9858-9877 | None:intergenic | 35.0% |
| TTACCCAACATCATGATTCA+TGG | - | tig0038559:9900-9919 | Msa1457220:three_prime_UTR | 35.0% | |
| ATGCCATGAATCATGATGTT+GGG | + | tig0038559:9906-9925 | None:intergenic | 35.0% | |
| TATGCCATGAATCATGATGT+TGG | + | tig0038559:9907-9926 | None:intergenic | 35.0% | |
| CCAACATGAATCAAGGAAAA+AGG | + | tig0038559:10060-10079 | None:intergenic | 35.0% | |
| ! | CCTTTTTCCTTGATTCATGT+TGG | - | tig0038559:10057-10076 | Msa1457220:CDS | 35.0% |
| TTAACCTGGAAACTTAGACA+TGG | - | tig0038559:10124-10143 | Msa1457220:intron | 35.0% | |
| ! | ACACCTTCAATTTGAAGTGT+AGG | - | tig0038559:10255-10274 | Msa1457220:intron | 35.0% |
| ATATAGATGCTAATGGCTTG+TGG | - | tig0038559:10291-10310 | Msa1457220:intron | 35.0% | |
| GGAAAATGGGAAATCGTATT+TGG | + | tig0038559:10423-10442 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTATGCTCAAGAC+CGG | + | tig0038559:10463-10482 | None:intergenic | 35.0% |
| TTGCTTATATTCAAGATCGG+AGG | - | tig0038559:10557-10576 | Msa1457220:intron | 35.0% | |
| !!! | TCGGAGGAAGTATTTTATCT+TGG | - | tig0038559:10573-10592 | Msa1457220:intron | 35.0% |
| TCGGTAAAAATTGGCATCTT+TGG | + | tig0038559:10599-10618 | None:intergenic | 35.0% | |
| TAAAACAACCAAATCCACAG+AGG | + | tig0038559:10663-10682 | None:intergenic | 35.0% | |
| TATCATCTGAAAGGACAATG+GGG | + | tig0038559:10870-10889 | None:intergenic | 35.0% | |
| GTATCATCTGAAAGGACAAT+GGG | + | tig0038559:10871-10890 | None:intergenic | 35.0% | |
| AAGATCAGGTATCATCTGAA+AGG | + | tig0038559:10879-10898 | None:intergenic | 35.0% | |
| CTGTGGTAAGTTTCATTATC+TGG | - | tig0038559:10951-10970 | Msa1457220:intron | 35.0% | |
| ATTGTGCAATAGAATACGCT+AGG | - | tig0038559:11045-11064 | Msa1457220:intron | 35.0% | |
| ATACTCCACTTGAATGCAAT+AGG | + | tig0038559:11319-11338 | None:intergenic | 35.0% | |
| TATTGCATTCAAGTGGAGTA+TGG | - | tig0038559:11318-11337 | Msa1457220:intron | 35.0% | |
| ATTGCATTCAAGTGGAGTAT+GGG | - | tig0038559:11319-11338 | Msa1457220:intron | 35.0% | |
| AAAAAAATCTGGATGGCTCA+TGG | + | tig0038559:11345-11364 | None:intergenic | 35.0% | |
| TCAAAGCTAAAAAGCCTTCA+TGG | - | tig0038559:11430-11449 | Msa1457220:intron | 35.0% | |
| ! | GATGAACCAATTTTCCATGA+AGG | + | tig0038559:11447-11466 | None:intergenic | 35.0% |
| CAAAAATTGCTCATGTGGAA+GGG | - | tig0038559:11706-11725 | Msa1457220:intron | 35.0% | |
| AATAATCCTCAATCAGCTTG+TGG | - | tig0038559:11779-11798 | Msa1457220:intron | 35.0% | |
| GTGGACATGAATCATATCAT+TGG | + | tig0038559:12266-12285 | None:intergenic | 35.0% | |
| !! | AATTTTGGCAATTGAGGTGT+GGG | + | tig0038559:12302-12321 | None:intergenic | 35.0% |
| !! | TAATTTTGGCAATTGAGGTG+TGG | + | tig0038559:12303-12322 | None:intergenic | 35.0% |
| TTGCAAAGAAAGTAGTTTGG+TGG | + | tig0038559:12340-12359 | None:intergenic | 35.0% | |
| ACAATCAATGAAAGTTCTGC+AGG | + | tig0038559:12387-12406 | None:intergenic | 35.0% | |
| !! | ACGTCCTTGAATTTTGACAA+AGG | + | tig0038559:12411-12430 | None:intergenic | 35.0% |
| TAAATTGACAGAAGCAAGGA+TGG | + | tig0038559:12460-12479 | None:intergenic | 35.0% | |
| CAACTAAATTGACAGAAGCA+AGG | + | tig0038559:12464-12483 | None:intergenic | 35.0% | |
| CTTGCTTCTGTCAATTTAGT+TGG | - | tig0038559:12462-12481 | Msa1457220:CDS | 35.0% | |
| CAAAAATTCCACTGAGTCAA+CGG | + | tig0038559:12605-12624 | None:intergenic | 35.0% | |
| TTTCGGAAACAACTACAACA+AGG | + | tig0038559:12640-12659 | None:intergenic | 35.0% | |
| TTGCTAGGCAACTTAATCAT+TGG | + | tig0038559:12696-12715 | None:intergenic | 35.0% | |
| ACACCAAACAACTTAAGAGA+GGG | + | tig0038559:13230-13249 | None:intergenic | 35.0% | |
| !! | GTTGTTTGGTGTCATTTCTT+TGG | - | tig0038559:13238-13257 | Msa1457220:intron | 35.0% |
| TAATGTTGTAACCTTTGTCG+TGG | - | tig0038559:13348-13367 | Msa1457220:intron | 35.0% | |
| AATGTTGTAACCTTTGTCGT+GGG | - | tig0038559:13349-13368 | Msa1457220:intron | 35.0% | |
| GTTATGCTATCGTTCGTTTA+AGG | - | tig0038559:13414-13433 | Msa1457220:intron | 35.0% | |
| TATGAAGTAGCTATAGAGAG+AGG | + | tig0038559:13521-13540 | None:intergenic | 35.0% | |
| !! | AAAGATGTATGGTGCTGTGT+TGG | - | tig0038559:9611-9630 | Msa1457220:three_prime_UTR | 40.0% |
| TTTGATGCGATTAGAGAGCT+TGG | - | tig0038559:9672-9691 | Msa1457220:three_prime_UTR | 40.0% | |
| TTGATGCGATTAGAGAGCTT+GGG | - | tig0038559:9673-9692 | Msa1457220:three_prime_UTR | 40.0% | |
| ATTAGAGAGCTTGGGATTGA+GGG | - | tig0038559:9681-9700 | Msa1457220:three_prime_UTR | 40.0% | |
| GATGCAGATGTAATAACCAG+AGG | + | tig0038559:9723-9742 | None:intergenic | 40.0% | |
| ! | TCATGGCATACCCATCTTTT+AGG | - | tig0038559:9917-9936 | Msa1457220:three_prime_UTR | 40.0% |
| ! | CATGGCATACCCATCTTTTA+GGG | - | tig0038559:9918-9937 | Msa1457220:three_prime_UTR | 40.0% |
| CGGACATCATACGACAAAAA+CGG | + | tig0038559:9959-9978 | None:intergenic | 40.0% | |
| ! | ATAGAAGCACAGAAGCCTAA+AGG | + | tig0038559:10009-10028 | None:intergenic | 40.0% |
| TTAGATGAGCATGCTTAACC+TGG | - | tig0038559:10110-10129 | Msa1457220:intron | 40.0% | |
| ATGTCCATGTCTAAGTTTCC+AGG | + | tig0038559:10131-10150 | None:intergenic | 40.0% | |
| GGAAACTTAGACATGGACAT+TGG | - | tig0038559:10131-10150 | Msa1457220:intron | 40.0% | |
| CAGCCTACACTTCAAATTGA+AGG | + | tig0038559:10261-10280 | None:intergenic | 40.0% | |
| AGAAAACATGTGTCGAGACA+GGG | - | tig0038559:10360-10379 | Msa1457220:intron | 40.0% | |
| GGTATCATCTGAAAGGACAA+TGG | + | tig0038559:10872-10891 | None:intergenic | 40.0% | |
| ! | GGCAGGATTTTCAGAAATAC+AGG | - | tig0038559:10916-10935 | Msa1457220:intron | 40.0% |
| ACAGGCTTTACAATCTTCTG+TGG | - | tig0038559:10934-10953 | Msa1457220:intron | 40.0% | |
| ! | TGTCCGATGAGTTGAGTAAT+AGG | - | tig0038559:11141-11160 | Msa1457220:intron | 40.0% |
| CAGCCTATTACTCAACTCAT+CGG | + | tig0038559:11147-11166 | None:intergenic | 40.0% | |
| TCAAATACCAGTAGCAGACT+GGG | + | tig0038559:11185-11204 | None:intergenic | 40.0% | |
| AGTCTGCTACTGGTATTTGA+CGG | - | tig0038559:11185-11204 | Msa1457220:intron | 40.0% | |
| TGGTCAGAGCGATGTTAATA+AGG | + | tig0038559:11369-11388 | None:intergenic | 40.0% | |
| AGGGTTGAATCTTTACCAGA+TGG | + | tig0038559:11585-11604 | None:intergenic | 40.0% | |
| TAGCTGACATGTTGTGCAAT+AGG | - | tig0038559:11650-11669 | Msa1457220:CDS | 40.0% | |
| AGCTGACATGTTGTGCAATA+GGG | - | tig0038559:11651-11670 | Msa1457220:CDS | 40.0% | |
| GCAATAGGGGATTGTGAAAT+CGG | - | tig0038559:11665-11684 | Msa1457220:CDS | 40.0% | |
| TGAAATCGGACCTACAAGAA+AGG | - | tig0038559:11679-11698 | Msa1457220:CDS | 40.0% | |
| ! | TTTTTGCAGGCCTTTCTTGT+AGG | + | tig0038559:11692-11711 | None:intergenic | 40.0% |
| ! | TCCACATGAGCAATTTTTGC+AGG | + | tig0038559:11705-11724 | None:intergenic | 40.0% |
| GCAAAAATTGCTCATGTGGA+AGG | - | tig0038559:11705-11724 | Msa1457220:intron | 40.0% | |
| !! | GAGGAGAAAGTGTTGAAGTT+AGG | - | tig0038559:11737-11756 | Msa1457220:intron | 40.0% |
| AAACTGAGATACCAGGATGT+CGG | + | tig0038559:11987-12006 | None:intergenic | 40.0% | |
| ATCCTGGTATCTCAGTTTCA+GGG | - | tig0038559:11989-12008 | Msa1457220:intron | 40.0% | |
| ! | GAATAGAAGTATGAGTGCCA+TGG | + | tig0038559:12098-12117 | None:intergenic | 40.0% |
| ! | CAAAGAAAGTAGTTTGGTGG+TGG | + | tig0038559:12337-12356 | None:intergenic | 40.0% |
| GCTTCTGTCAATTTAGTTGG+AGG | - | tig0038559:12465-12484 | Msa1457220:CDS | 40.0% | |
| !! | GCATTTGCTGCTTCTGTTTT+CGG | + | tig0038559:12657-12676 | None:intergenic | 40.0% |
| !! | GGCAACTTAATCATTGGCTT+TGG | + | tig0038559:12690-12709 | None:intergenic | 40.0% |
| TTAGTCATTCTGTGGCTCTT+TGG | + | tig0038559:12755-12774 | None:intergenic | 40.0% | |
| GAGTTGAATTGCAATCAGCT+TGG | - | tig0038559:12964-12983 | Msa1457220:intron | 40.0% | |
| AGCTTGGTCAGTGAATTTCT+GGG | - | tig0038559:12980-12999 | Msa1457220:intron | 40.0% | |
| GAAAATCCCAAACTCTGCAA+GGG | + | tig0038559:13009-13028 | None:intergenic | 40.0% | |
| AGAAAATCCCAAACTCTGCA+AGG | + | tig0038559:13010-13029 | None:intergenic | 40.0% | |
| TTTGTCTTTGGTCTACAGTG+TGG | - | tig0038559:13119-13138 | Msa1457220:intron | 40.0% | |
| TTGTCTTTGGTCTACAGTGT+GGG | - | tig0038559:13120-13139 | Msa1457220:intron | 40.0% | |
| ! | TACCTTCTCTCCCATTTTGA+AGG | + | tig0038559:13195-13214 | None:intergenic | 40.0% |
| ! | TCTCCCTCTCTTAAGTTGTT+TGG | - | tig0038559:13224-13243 | Msa1457220:intron | 40.0% |
| GACACCAAACAACTTAAGAG+AGG | + | tig0038559:13231-13250 | None:intergenic | 40.0% | |
| TCTATCATATGTCTGCAGCA+AGG | + | tig0038559:13328-13347 | None:intergenic | 40.0% | |
| GCTTACGATGCAGAAAACAA+AGG | + | tig0038559:13559-13578 | None:intergenic | 40.0% | |
| GCATCAAACACTTGACTGAC+AGG | + | tig0038559:9660-9679 | None:intergenic | 45.0% | |
| GATTAGAGAGCTTGGGATTG+AGG | - | tig0038559:9680-9699 | Msa1457220:three_prime_UTR | 45.0% | |
| TTAGAGAGCTTGGGATTGAG+GGG | - | tig0038559:9682-9701 | Msa1457220:three_prime_UTR | 45.0% | |
| GATTGAGGGGGTTGAGAAAT+TGG | - | tig0038559:9695-9714 | Msa1457220:three_prime_UTR | 45.0% | |
| GGTTGAGAAATTGGATCCTC+TGG | - | tig0038559:9704-9723 | Msa1457220:three_prime_UTR | 45.0% | |
| ! | GTAACCACATGTGTCACTCT+CGG | - | tig0038559:10223-10242 | Msa1457220:CDS | 45.0% |
| ! | ATGTTTGAAGTTTGTGGGGG+TGG | - | tig0038559:10326-10345 | Msa1457220:intron | 45.0% |
| ! | TGTTTGAAGTTTGTGGGGGT+GGG | - | tig0038559:10327-10346 | Msa1457220:intron | 45.0% |
| GAGAAAACATGTGTCGAGAC+AGG | - | tig0038559:10359-10378 | Msa1457220:intron | 45.0% | |
| ! | TTTCCCATTTTCCGCATGTG+CGG | - | tig0038559:10430-10449 | Msa1457220:intron | 45.0% |
| AACTTCAGGCAAGTTTCCAG+TGG | - | tig0038559:10631-10650 | Msa1457220:intron | 45.0% | |
| GGAATCTTCCTCTGTGGATT+TGG | - | tig0038559:10652-10671 | Msa1457220:intron | 45.0% | |
| TCTTGAGTCAGTTGGTCGAT+AGG | + | tig0038559:10707-10726 | None:intergenic | 45.0% | |
| TGAGGACTTCTTGAGTCAGT+TGG | + | tig0038559:10715-10734 | None:intergenic | 45.0% | |
| ! | GTCCTCAGAGTGTTAAAACC+TGG | - | tig0038559:10728-10747 | Msa1457220:intron | 45.0% |
| ! | CTCAGAGTGTTAAAACCTGG+CGG | - | tig0038559:10731-10750 | Msa1457220:intron | 45.0% |
| ! | TCAGAGTGTTAAAACCTGGC+GGG | - | tig0038559:10732-10751 | Msa1457220:intron | 45.0% |
| AAATCCTCCCAATCTGCTGT+GGG | - | tig0038559:10770-10789 | Msa1457220:intron | 45.0% | |
| GTCAAATACCAGTAGCAGAC+TGG | + | tig0038559:11186-11205 | None:intergenic | 45.0% | |
| ACGGCCATTGCTGTAGTTAA+TGG | - | tig0038559:11204-11223 | Msa1457220:intron | 45.0% | |
| GGTTGTGAAAAGTTCACCCA+AGG | - | tig0038559:11482-11501 | Msa1457220:intron | 45.0% | |
| AAGAAACCTGAACTGCCATC+TGG | - | tig0038559:11567-11586 | Msa1457220:intron | 45.0% | |
| TCTTTACCAGATGGCAGTTC+AGG | + | tig0038559:11576-11595 | None:intergenic | 45.0% | |
| AGAGGGACAAAGCTAGAGAA+GGG | + | tig0038559:11604-11623 | None:intergenic | 45.0% | |
| TAGAGGGACAAAGCTAGAGA+AGG | + | tig0038559:11605-11624 | None:intergenic | 45.0% | |
| GCTGACATGTTGTGCAATAG+GGG | - | tig0038559:11652-11671 | Msa1457220:CDS | 45.0% | |
| GCCTGCAAAAATTGCTCATG+TGG | - | tig0038559:11701-11720 | Msa1457220:intron | 45.0% | |
| TGTTCAAATAGCCGACATCC+TGG | - | tig0038559:11973-11992 | Msa1457220:intron | 45.0% | |
| CATCCTGGTATCTCAGTTTC+AGG | - | tig0038559:11988-12007 | Msa1457220:intron | 45.0% | |
| AACCCTGAAACTGAGATACC+AGG | + | tig0038559:11994-12013 | None:intergenic | 45.0% | |
| TGGTATCTCAGTTTCAGGGT+TGG | - | tig0038559:11993-12012 | Msa1457220:intron | 45.0% | |
| GTCAATTCCAAATAGCGGCA+TGG | + | tig0038559:12024-12043 | None:intergenic | 45.0% | |
| TGTGGGATGTTGAGTTAGAG+TGG | + | tig0038559:12285-12304 | None:intergenic | 45.0% | |
| !! | GTTTGGTGGTGGAGTTTGAT+AGG | + | tig0038559:12326-12345 | None:intergenic | 45.0% |
| TCTTCTCACGTGCTTCCTAT+TGG | - | tig0038559:12511-12530 | Msa1457220:intron | 45.0% | |
| CTTCTCACGTGCTTCCTATT+GGG | - | tig0038559:12512-12531 | Msa1457220:intron | 45.0% | |
| AACTTGCAACAGCTCCCAAT+AGG | + | tig0038559:12529-12548 | None:intergenic | 45.0% | |
| ATTGGGAGCTGTTGCAAGTT+TGG | - | tig0038559:12529-12548 | Msa1457220:intron | 45.0% | |
| AACCATACGCTGCATTTGCT+AGG | + | tig0038559:12711-12730 | None:intergenic | 45.0% | |
| CAGCTTGGTCAGTGAATTTC+TGG | - | tig0038559:12979-12998 | Msa1457220:intron | 45.0% | |
| TTTGGTCTACAGTGTGGGTT+AGG | - | tig0038559:13125-13144 | Msa1457220:intron | 45.0% | |
| ! | TTGGTCTACAGTGTGGGTTA+GGG | - | tig0038559:13126-13145 | Msa1457220:intron | 45.0% |
| !! | TTCTCTCCCATTTTGAAGGC+AGG | + | tig0038559:13191-13210 | None:intergenic | 45.0% |
| TGCCTTCAAAATGGGAGAGA+AGG | - | tig0038559:13190-13209 | Msa1457220:intron | 45.0% | |
| ! | TTTTTGCAGGTTGCACTGTC+CGG | - | tig0038559:13296-13315 | Msa1457220:intron | 45.0% |
| TGTAACCTTTGTCGTGGGAA+TGG | - | tig0038559:13354-13373 | Msa1457220:intron | 45.0% | |
| !! | ATAATGATTTAATTAAAAAT+TGG | + | tig0038559:11862-11881 | None:intergenic | 5.0% |
| !!! | ATTTTTAATTAAATCATTAT+TGG | - | tig0038559:11862-11881 | Msa1457220:CDS | 5.0% |
| !! | TGGTGCTGTGTTGGCATGTA+CGG | - | tig0038559:9620-9639 | Msa1457220:three_prime_UTR | 50.0% |
| TAGAGAGCTTGGGATTGAGG+GGG | - | tig0038559:9683-9702 | Msa1457220:three_prime_UTR | 50.0% | |
| TCCAGTGGAATCTTCCTCTG+TGG | - | tig0038559:10646-10665 | Msa1457220:intron | 50.0% | |
| TCCACAGAGGAAGATTCCAC+TGG | + | tig0038559:10650-10669 | None:intergenic | 50.0% | |
| !! | CGCCAGGTTTTAACACTCTG+AGG | + | tig0038559:10733-10752 | None:intergenic | 50.0% |
| CAAATCCTCCCAATCTGCTG+TGG | - | tig0038559:10769-10788 | Msa1457220:intron | 50.0% | |
| ACCTGAACCCACAGCAGATT+GGG | + | tig0038559:10780-10799 | None:intergenic | 50.0% | |
| TGCTGTGGGTTCAGGTGATA+AGG | - | tig0038559:10784-10803 | Msa1457220:intron | 50.0% | |
| ATGTGGAAGGGCAGAAGAAG+AGG | - | tig0038559:11718-11737 | Msa1457220:intron | 50.0% | |
| ACACTGCCACAAGCTGATTG+AGG | + | tig0038559:11788-11807 | None:intergenic | 50.0% | |
| TGCCTAGCAAATGCAGCGTA+TGG | - | tig0038559:12706-12725 | Msa1457220:intron | 50.0% | |
| TGGGATTCCCTTGCAGAGTT+TGG | - | tig0038559:12999-13018 | Msa1457220:intron | 50.0% | |
| GGGATTCCCTTGCAGAGTTT+GGG | - | tig0038559:13000-13019 | Msa1457220:intron | 50.0% | |
| !! | TGGTCTACAGTGTGGGTTAG+GGG | - | tig0038559:13127-13146 | Msa1457220:intron | 50.0% |
| TGCAGTACCTGCCCTTACAA+GGG | - | tig0038559:13161-13180 | Msa1457220:intron | 50.0% | |
| GGACTGCCTGCCTTCAAAAT+GGG | - | tig0038559:13182-13201 | Msa1457220:intron | 50.0% | |
| GTCTGCAGCAAGGAAGTTAC+CGG | + | tig0038559:13318-13337 | None:intergenic | 50.0% | |
| TCATGCCATTCCCACGACAA+AGG | + | tig0038559:13362-13381 | None:intergenic | 50.0% | |
| GTGTCCGAGAGTGACACATG+TGG | + | tig0038559:10230-10249 | None:intergenic | 55.0% | |
| TTGAAGTTTGTGGGGGTGGG+TGG | - | tig0038559:10330-10349 | Msa1457220:intron | 55.0% | |
| TGAAGTTTGTGGGGGTGGGT+GGG | - | tig0038559:10331-10350 | Msa1457220:intron | 55.0% | |
| CATGTGTCGAGACAGGGTCT+TGG | - | tig0038559:10366-10385 | Msa1457220:intron | 55.0% | |
| GACAGGGTCTTGGCAGAAGT+TGG | - | tig0038559:10376-10395 | Msa1457220:intron | 55.0% | |
| GCACCGCACATGCGGAAAAT+GGG | + | tig0038559:10436-10455 | None:intergenic | 55.0% | |
| AGCACCGCACATGCGGAAAA+TGG | + | tig0038559:10437-10456 | None:intergenic | 55.0% | |
| CGAATAAGAGTTGTCCCGCC+AGG | + | tig0038559:10749-10768 | None:intergenic | 55.0% | |
| TGAACCCACAGCAGATTGGG+AGG | + | tig0038559:10777-10796 | None:intergenic | 55.0% | |
| TCCCAATCTGCTGTGGGTTC+AGG | - | tig0038559:10776-10795 | Msa1457220:intron | 55.0% | |
| CACCTGAACCCACAGCAGAT+TGG | + | tig0038559:10781-10800 | None:intergenic | 55.0% | |
| CTTGAAGCCCAGTCTGCTAC+TGG | - | tig0038559:11175-11194 | Msa1457220:intron | 55.0% | |
| GGACTCTCCATGCCGCTATT+TGG | - | tig0038559:12014-12033 | Msa1457220:intron | 55.0% | |
| !! | ATTCGCTGCCGTTGACTCAG+TGG | - | tig0038559:12594-12613 | Msa1457220:CDS | 55.0% |
| !! | GTGGGTTAGGGGATGCGTTT+AGG | - | tig0038559:13138-13157 | Msa1457220:intron | 55.0% |
| GTGCAGTACCTGCCCTTACA+AGG | - | tig0038559:13160-13179 | Msa1457220:intron | 55.0% | |
| AGGCAGGCAGTCCCTTGTAA+GGG | + | tig0038559:13175-13194 | None:intergenic | 55.0% | |
| AAGGCAGGCAGTCCCTTGTA+AGG | + | tig0038559:13176-13195 | None:intergenic | 55.0% | |
| GGGACTGCCTGCCTTCAAAA+TGG | - | tig0038559:13181-13200 | Msa1457220:intron | 55.0% | |
| AGGCAGTCCCTTGTAAGGGC+AGG | + | tig0038559:13171-13190 | None:intergenic | 60.0% | |
| AGTTTGTGGGGGTGGGTGGG+TGG | - | tig0038559:10334-10353 | Msa1457220:intron | 65.0% | |
| GTTTGTGGGGGTGGGTGGGT+GGG | - | tig0038559:10335-10354 | Msa1457220:intron | 65.0% | |
| CCGGAGTAGCACCGCACATG+CGG | + | tig0038559:10444-10463 | None:intergenic | 65.0% | |
| !! | CCGCATGTGCGGTGCTACTC+CGG | - | tig0038559:10441-10460 | Msa1457220:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0038559 | gene | 9603 | 13778 | 9603 | ID=Msa1457220;Name=Msa1457220 |
| tig0038559 | mRNA | 9603 | 13778 | 9603 | ID=Msa1457220-mRNA-1;Parent=Msa1457220;Name=Msa1457220-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.83|0.71|1|1|1|7|435|238 |
| tig0038559 | exon | 9603 | 10076 | 9603 | ID=Msa1457220-mRNA-1:exon:21055;Parent=Msa1457220-mRNA-1 |
| tig0038559 | exon | 10170 | 10244 | 10170 | ID=Msa1457220-mRNA-1:exon:21054;Parent=Msa1457220-mRNA-1 |
| tig0038559 | exon | 11576 | 11709 | 11576 | ID=Msa1457220-mRNA-1:exon:21053;Parent=Msa1457220-mRNA-1 |
| tig0038559 | exon | 11793 | 11952 | 11793 | ID=Msa1457220-mRNA-1:exon:21052;Parent=Msa1457220-mRNA-1 |
| tig0038559 | exon | 12426 | 12497 | 12426 | ID=Msa1457220-mRNA-1:exon:21051;Parent=Msa1457220-mRNA-1 |
| tig0038559 | exon | 12576 | 12689 | 12576 | ID=Msa1457220-mRNA-1:exon:21050;Parent=Msa1457220-mRNA-1 |
| tig0038559 | exon | 13656 | 13778 | 13656 | ID=Msa1457220-mRNA-1:exon:21049;Parent=Msa1457220-mRNA-1 |
| tig0038559 | CDS | 13656 | 13778 | 13656 | ID=Msa1457220-mRNA-1:cds;Parent=Msa1457220-mRNA-1 |
| tig0038559 | CDS | 12576 | 12689 | 12576 | ID=Msa1457220-mRNA-1:cds;Parent=Msa1457220-mRNA-1 |
| tig0038559 | CDS | 12426 | 12497 | 12426 | ID=Msa1457220-mRNA-1:cds;Parent=Msa1457220-mRNA-1 |
| tig0038559 | CDS | 11793 | 11952 | 11793 | ID=Msa1457220-mRNA-1:cds;Parent=Msa1457220-mRNA-1 |
| tig0038559 | CDS | 11576 | 11709 | 11576 | ID=Msa1457220-mRNA-1:cds;Parent=Msa1457220-mRNA-1 |
| tig0038559 | CDS | 10170 | 10244 | 10170 | ID=Msa1457220-mRNA-1:cds;Parent=Msa1457220-mRNA-1 |
| tig0038559 | CDS | 10038 | 10076 | 10038 | ID=Msa1457220-mRNA-1:cds;Parent=Msa1457220-mRNA-1 |
| tig0038559 | three_prime_UTR | 9603 | 10037 | 9603 | ID=Msa1457220-mRNA-1:three_prime_utr;Parent=Msa1457220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
