AlfalfaGEDB | Msa1045280

M. sativa cultivar zhongmu-4 / Msa1045280

KEGG: -
GO: -
PFAM: PF06813.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045280	XP_013447979.1	68.841	138	41	2	1	138	23	158	1.57e-45	182
Msa1045280	XP_013447979.1	97.719	570	13	0	91	660	20	589	0.0	1122

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045280	sp\|F4I9E1\|NFD4_ARATH	23.304	575	369	15	91	650	48	565	1.89e-30	130

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045280	A0A072TXV1	68.841	138	41	2	1	138	23	158	7.50e-46	182
Msa1045280	A0A072TXV1	97.719	570	13	0	91	660	20	589	0.0	1122

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013270	Msa1045280	0.808781	2.615764e-50	-8.615850e-47
Msa0017300	Msa1045280	-0.800923	1.147771e-48	-8.615850e-47
Msa0037180	Msa1045280	0.829502	4.965739e-55	-8.615850e-47
Msa0045810	Msa1045280	0.816213	6.208934e-52	-8.615850e-47
Msa0092220	Msa1045280	0.809380	1.947242e-50	-8.615850e-47
Msa0124910	Msa1045280	0.808139	3.586738e-50	-8.615850e-47
Msa0139500	Msa1045280	0.827672	1.374473e-54	-8.615850e-47
Msa0140880	Msa1045280	0.821608	3.688499e-53	-8.615850e-47
Msa0143590	Msa1045280	0.928326	3.384327e-92	-8.615850e-47
Msa0177320	Msa1045280	0.851325	9.553007e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045280	MtrunA17_Chr7g0225191	97.719	570	13	0	91	660	20	589	0.0	1122
Msa1045280	MtrunA17_Chr7g0225191	68.841	138	41	2	1	138	23	158	1.44e-49	182
Msa1045280	MtrunA17_Chr3g0132161	50.783	575	236	5	91	653	20	559	0.0	548
Msa1045280	MtrunA17_Chr3g0132161	61.538	91	35	0	1	91	23	113	3.08e-28	119
Msa1045280	MtrunA17_Chr2g0304561	35.512	566	342	7	93	657	19	562	6.77e-110	343
Msa1045280	MtrunA17_Chr2g0304561	41.304	92	51	1	1	89	20	111	1.34e-13	73.9
Msa1045280	MtrunA17_Chr4g0064981	35.889	574	336	9	93	657	18	568	2.00e-109	342
Msa1045280	MtrunA17_Chr4g0064981	41.905	105	56	2	1	100	19	123	1.71e-15	80.1
Msa1045280	MtrunA17_Chr5g0405621	34.798	569	312	7	91	656	18	530	1.79e-101	320
Msa1045280	MtrunA17_Chr5g0405621	40.449	89	53	0	1	89	21	109	1.95e-13	73.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045280	AT3G01930.2	69.983	573	152	4	91	654	21	582	0.0	799
Msa1045280	AT3G01930.2	81.319	91	17	0	1	91	24	114	2.21e-40	156
Msa1045280	AT5G14120.1	70.951	568	150	4	91	654	21	577	0.0	798
Msa1045280	AT5G14120.1	79.121	91	19	0	1	91	24	114	1.01e-39	154
Msa1045280	AT3G01930.1	67.708	480	135	4	184	654	1	469	0.0	647
Msa1045280	AT3G01930.3	72.048	415	107	3	91	496	21	435	0.0	585
Msa1045280	AT3G01930.3	81.319	91	17	0	1	91	24	114	2.09e-41	156
Msa1045280	AT5G50630.1	47.803	569	242	7	91	655	21	538	0.0	524
Msa1045280	AT5G50630.1	66.667	90	29	1	1	89	24	113	3.05e-30	125
Msa1045280	AT5G50520.1	47.803	569	242	7	91	655	21	538	0.0	524

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Find 164 sgRNAs with CRISPR-Local

Find 474 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCGGGGTCCCGTGGT+TGG	0.515273	7_2:-4574730	Msa1045280:CDS
AAACAAGTGCGGCCGTCGGA+TGG	0.533967	7_2:-4574547	Msa1045280:CDS
AAAGAATTTGCAAAACCGCG+TGG	0.673930	7_2:+4572650	None:intergenic
AAAGACCTTGGTGATGCTGT+TGG	0.596617	7_2:-4579435	Msa1045280:CDS
AAAGACCTTGGTGATTGTGT+TGG	0.574197	7_2:-4577534	Msa1045280:CDS
AAAGTTCCAAATACTGATCA+TGG	0.424968	7_2:+4573961	None:intergenic
AAATCTTTCACGTTGGTTTA+TGG	0.174292	7_2:-4574523	Msa1045280:CDS
AAATTCCAACCACGGGACCC+CGG	0.570142	7_2:+4574725	None:intergenic
AACTTTCTTGGACGTGTTGG+AGG	0.470215	7_2:-4573944	Msa1045280:CDS
AAGGAGCTGTGAGGGTTAAG+AGG	0.447202	7_2:-4574159	Msa1045280:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTGGTATAGGATATTTATT+TGG	-	chr7_2:4572358-4572377	Msa1045280:three_prime_UTR	30.0%
AAAAAACTTACAGCCCATAA+AGG	+	chr7_2:4572601-4572620	None:intergenic	30.0%
ACCCTTTATTCCAGATATTA+TGG	+	chr7_2:4573206-4573225	None:intergenic	30.0%
ACTTTAAATCTAACAGTGAC+AGG	-	chr7_2:4573258-4573277	Msa1045280:CDS	30.0%
CAAGATTGAGAAAAGAGAAA+TGG	+	chr7_2:4573322-4573341	None:intergenic	30.0%
AAAAGGAGAATGTGAAAGAA+TGG	-	chr7_2:4573486-4573505	Msa1045280:intron	30.0%
TGTATACCATTATATCTGGA+GGG	+	chr7_2:4573541-4573560	None:intergenic	30.0%
ATGTATACCATTATATCTGG+AGG	+	chr7_2:4573542-4573561	None:intergenic	30.0%
ACTTTACTCAATTTGGTTGT+TGG	-	chr7_2:4573620-4573639	Msa1045280:intron	30.0%
TGCAAACTAAACTAAACTCA+TGG	-	chr7_2:4573698-4573717	Msa1045280:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	4572340	4579568	4572340	ID=Msa1045280;Name=Msa1045280
chr7_2	mRNA	4572340	4579568	4572340	ID=Msa1045280-mRNA-1;Parent=Msa1045280;Name=Msa1045280-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0.33\|0.5\|1\|1\|1\|4\|488\|660
chr7_2	exon	4572340	4573341	4572340	ID=Msa1045280-mRNA-1:exon:1066;Parent=Msa1045280-mRNA-1
chr7_2	exon	4573917	4574836	4573917	ID=Msa1045280-mRNA-1:exon:1065;Parent=Msa1045280-mRNA-1
chr7_2	exon	4577398	4577672	4577398	ID=Msa1045280-mRNA-1:exon:1064;Parent=Msa1045280-mRNA-1
chr7_2	exon	4579295	4579568	4579295	ID=Msa1045280-mRNA-1:exon:1063;Parent=Msa1045280-mRNA-1
chr7_2	CDS	4579295	4579568	4579295	ID=Msa1045280-mRNA-1:cds;Parent=Msa1045280-mRNA-1
chr7_2	CDS	4577398	4577672	4577398	ID=Msa1045280-mRNA-1:cds;Parent=Msa1045280-mRNA-1
chr7_2	CDS	4573917	4574836	4573917	ID=Msa1045280-mRNA-1:cds;Parent=Msa1045280-mRNA-1
chr7_2	CDS	4572828	4573341	4572828	ID=Msa1045280-mRNA-1:cds;Parent=Msa1045280-mRNA-1
chr7_2	three_prime_UTR	4572340	4572827	4572340	ID=Msa1045280-mRNA-1:three_prime_utr;Parent=Msa1045280-mRNA-1

Gene Sequence

>Msa1045280

ATGTGGTTACAATCATGGGCTGGTATAGGATATTTATTTGGAAGCATATCACCAGTTATAAAAAGTTCATTAAATTATAATCAAAAACAACTTGCTATGTTAGGTGTTGCAAAAGACCTTGGTGATGCTGTTGGTTTTTTAACTGGTGTTTTGTGTGAAATTTTACCTATTTGGGCTGCGTTACTTGTTGGAGCTTCTTTGAATCTTGTTGGTTATGGCTGGGTTTGGTTAATTGTTACTAGTAAAGTTCCTGTTCTTCCTTTATGGGCTGTAAGAGCAATGTGGTTACAATCATGGGCTGGTATAGGATATTTATTTGGAAGCATATCACCAGTTATAAAAAGTTCATTAAATTATAATCAAAAACAACTTGCTATGTTAGGTGTTGCAAAAGACCTTGGTGATTGTGTTGGTTTTTTAACTGGTGTTTTGTGTGAAATTTTACCTATTTGGGCTGCTTTGCTTGTTGGAGCTTCTTTGAATCTTGTTGGTTATGGCTGGGTTTGGTTAATTGTTACTAGTAAAGTTCCTGTTCTTCCTTTATGGGCTATGTGTATTCTTATATTTGTGGGAACAAATGGTGAAACCTACTTCAACACAGTTTCTTTGGTTTCTTGTGTTCAAAATTTCCCGAAAAGCCGGGGTCCCGTGGTTGGAATTTTAAAGGGCTTTGCTGGATTGAGTGGTGCAATATTGACTCAAATATATGCAGTTATCCATTCCCCTGATCATGCATCGTTAATATTCATGGTTGCTGTTGGTCCAGCATTGGTAGGAATAGGTCTTATGTTCATTGTTAGACCTGTCGGAGGTCACAAACAAGTGCGGCCGTCGGATGGAAAATCTTTCACGTTGGTTTATGGTGTATGTCTCTTGTTGGCTGCTTATTTGATGGGAGTTATGGTTGTTCAAGATTTAGTTGATCTGAGTGAAACTGTTATCACAATTTTTACAATCATCCTCTTTTTGATCCTCATTGCTCCGATTATAATTCCTTTGTCATTAACCTTCGGCCCTGCGGAAAAACCTCTAGAGGAAGAAGCACTTCTTCCAGAAACAGAAGGACAATCTCAAAATTATTCAGATGAAGTAATATTAAGTGAGTTGGAAGATGAGAAGCCTAAGGAAGTGGACTTGCTCCCTGCGTCGGAAAGGCAGAAACGTATAGCACAATTACAATCAAGACTGCTGCAAGCTGCTGCAGAAGGAGCTGTGAGGGTTAAGAGGAGGAGAGGACCACATAGAGGAGAAGATTTTACCTTGACGCAAGCTTTGATTAAAGCAGATTTTTGGCTTCTTTTCATTTCCATGGTCTTAGGTTCTGGATCTGGGTTGACTGTAATTGACAATCTCGGTCAGATGAGCCAGTCTTTGGGATATGACAATGCACATATTTTCGTCTCCATGATCAGTATTTGGAACTTTCTTGGACGTGTTGGAGGCGGCTACATATCTGAGATTGTTGTCAAGGATCATACATATCCAAGACCAGCTGCATTAGCTGCATTTCAACTAGCTATGACTGTTGGTCATCTTTTCATTGGCATGGGATGGCCAGGTTCAATGTACGTTGGCACTTTACTAGTTGGACTTGGTTACGGTGCTCATTGGGCAGTTGTTCCAGCTACAGCCTCTGAATTATTTGGTTTAAGAAACTTTGGTGCATTATACAATTTCATCACTCTAGCAAACCCTGTTGGAACTCTTGTCTTCTCTAGTCTCATTGCTAGTAGGATCTATGATTATGAAGCAGAGAAACAAGCTCATGGTGGCCAAAACCTGAATATAGCATCATTCGTATCTAGTGCGCTTAATGTTGGTGACGCGCCAAAGTGCGAAGGTTCCATATGCTTCTTCCTGACATCCACTATCATGGCAGGATTATGCATTGTTGCGGCAGGGTTAAGCATGTTTCTCGTGTTCCGAACAAGGATTGTTTATGCTAGCTTGTATGGAAAATCTTCTATGCGAAGCCTTCGATGA

Protein sequence

>Msa1045280

MWLQSWAGIGYLFGSISPVIKSSLNYNQKQLAMLGVAKDLGDAVGFLTGVLCEILPIWAALLVGASLNLVGYGWVWLIVTSKVPVLPLWAVRAMWLQSWAGIGYLFGSISPVIKSSLNYNQKQLAMLGVAKDLGDCVGFLTGVLCEILPIWAALLVGASLNLVGYGWVWLIVTSKVPVLPLWAMCILIFVGTNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYAVIHSPDHASLIFMVAVGPALVGIGLMFIVRPVGGHKQVRPSDGKSFTLVYGVCLLLAAYLMGVMVVQDLVDLSETVITIFTIILFLILIAPIIIPLSLTFGPAEKPLEEEALLPETEGQSQNYSDEVILSELEDEKPKEVDLLPASERQKRIAQLQSRLLQAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLLFISMVLGSGSGLTVIDNLGQMSQSLGYDNAHIFVSMISIWNFLGRVGGGYISEIVVKDHTYPRPAALAAFQLAMTVGHLFIGMGWPGSMYVGTLLVGLGYGAHWAVVPATASELFGLRNFGALYNFITLANPVGTLVFSSLIASRIYDYEAEKQAHGGQNLNIASFVSSALNVGDAPKCEGSICFFLTSTIMAGLCIVAAGLSMFLVFRTRIVYASLYGKSSMRSLR*