AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0220110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0220110 MtrunA17_Chr2g0323531 94.613 297 6 2 1 297 1 287 0.0 569
Msa0220110 MtrunA17_Chr4g0022631 73.649 296 66 4 1 293 1 287 2.29e-151 426
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0220110 AT2G20890.1 64.706 289 87 4 3 291 5 278 1.61e-128 368

Find 97 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCAATTCTGCTTCTAAAA+TGG 0.248095 2_1:-68290672 Msa0220110:CDS
TACATAAGGCCGTGTATTAA+AGG 0.276638 2_1:+68287597 None:intergenic
AATTTACTATCATCAGTTAT+TGG 0.300905 2_1:-68287677 Msa0220110:three_prime_UTR
GTACTTTCAGTTTCTAGTTA+TGG 0.302790 2_1:-68290840 Msa0220110:exon
ATTAATATAAGCTTTGAAAA+TGG 0.307680 2_1:+68289632 None:intergenic
TCAATTCGACATCAATTTCA+TGG 0.311232 2_1:-68287704 Msa0220110:three_prime_UTR
GAGTAAATAACTTTATATTT+CGG 0.316353 2_1:-68287736 Msa0220110:three_prime_UTR
AATACACGGCCTTATGTATC+AGG 0.326090 2_1:-68287592 Msa0220110:three_prime_UTR
GACTCAGAAAATATCCTTCA+TGG 0.330991 2_1:+68290902 None:intergenic
GAGCCACAGAAGGCTAATAA+TGG 0.333096 2_1:-68288059 Msa0220110:CDS
GTTCTGATATGTTTGGAATT+CGG 0.343615 2_1:-68290730 Msa0220110:CDS
TCATGAAACCTGTATTGTTC+TGG 0.346032 2_1:+68289594 None:intergenic
CCCTTCAACTTCTCCTTCTC+TGG 0.352035 2_1:+68289114 None:intergenic
TACTCAGAATGTATGCCTTT+AGG 0.361473 2_1:+68287754 None:intergenic
TATGATTCTGTATTTGCTCT+TGG 0.366606 2_1:-68289714 Msa0220110:CDS
GCTTCAAGTTCTGATATGTT+TGG 0.372546 2_1:-68290737 Msa0220110:CDS
TGTGTTGGAAACAAAGTATA+AGG 0.375008 2_1:+68290974 None:intergenic
GCTACCTTGTCTAAAATTGT+TGG 0.381994 2_1:+68288983 None:intergenic
TGCAAAGAAGTTGGAAGATT+GGG 0.391763 2_1:-68289176 Msa0220110:CDS
TTGGTCGTTTATATGCCTTT+AGG 0.392956 2_1:+68289814 None:intergenic
TTTAAGGCTTGTGAGTTCAA+TGG 0.400418 2_1:-68287439 Msa0220110:three_prime_UTR
CCTTCTATTATAAAGTTGTA+TGG 0.402693 2_1:-68287629 Msa0220110:three_prime_UTR
GAAGAAGAAAAGAGAAGAAA+GGG 0.415256 2_1:-68288084 Msa0220110:CDS
AGAAGAAGAAAAGAGAAGAA+AGG 0.421659 2_1:-68288085 Msa0220110:CDS
TGCTTTCAAAACATTTGTGT+TGG 0.423270 2_1:+68290959 None:intergenic
CAATGCATGTCTTCTGTCAC+AGG 0.424463 2_1:-68290644 Msa0220110:intron
CCATACAACTTTATAATAGA+AGG 0.425241 2_1:+68287629 None:intergenic
AGCTTATATTAATGCATTGA+AGG 0.425504 2_1:-68289622 Msa0220110:CDS
AGCCACAGAAGGCTAATAAT+GGG 0.431472 2_1:-68288058 Msa0220110:CDS
CCGTATGCTGCTTTCCAAGC+TGG 0.431919 2_1:-68288611 Msa0220110:CDS
AGGAAGATCCAGAACAATAC+AGG 0.432189 2_1:-68289602 Msa0220110:intron
GAGCAAATACAGAATCATAT+TGG 0.436295 2_1:+68289718 None:intergenic
ATGCAAAGAAGTTGGAAGAT+TGG 0.439138 2_1:-68289177 Msa0220110:CDS
CGACAAAAGAAGCGTTGATC+GGG 0.440456 2_1:-68288647 Msa0220110:CDS
ATGATTTCTCATACTGTACT+TGG 0.446409 2_1:-68287902 Msa0220110:three_prime_UTR
CAGAGTAGATGCAAAGAAGT+TGG 0.448896 2_1:-68289185 Msa0220110:CDS
TTTACCCACTCAATTTGTAA+TGG 0.450196 2_1:+68288034 None:intergenic
CAACTCAGTGGATTAAGAAA+AGG 0.464136 2_1:+68287942 None:intergenic
AAGAAGCGTTGATCGGGACT+TGG 0.466265 2_1:-68288641 Msa0220110:CDS
TTATTATTGTTAGTTGGTCA+TGG 0.470353 2_1:-68289888 Msa0220110:intron
TTTGTCCTTCCTTTCCATGA+AGG 0.471047 2_1:-68290916 Msa0220110:five_prime_UTR
TTGTAATAATTGTAAACCTA+TGG 0.474262 2_1:+68287493 None:intergenic
TATCTATAACAATGTGCTGC+AGG 0.485681 2_1:-68289784 Msa0220110:CDS
CAAGTGTGAGTTATTGCCAT+AGG 0.490030 2_1:-68287509 Msa0220110:three_prime_UTR
GAAGAAAAGAGAAGAAAGGG+TGG 0.490264 2_1:-68288081 Msa0220110:CDS
TATTATTGTTAGTTGGTCAT+GGG 0.501367 2_1:-68289887 Msa0220110:intron
GGCTCAAAACTCAACTTCAC+TGG 0.505541 2_1:-68289149 Msa0220110:CDS
CTATGGCAATAACTCACACT+TGG 0.507763 2_1:+68287510 None:intergenic
TCCAGAGAAGGAGAAGTTGA+AGG 0.514458 2_1:-68289115 Msa0220110:CDS
CACTGTCTATGATAAACTCA+TGG 0.515316 2_1:-68289685 Msa0220110:CDS
AGCACATTGTTATAGATACT+AGG 0.518130 2_1:+68289789 None:intergenic
TCGACAAAAGAAGCGTTGAT+CGG 0.519628 2_1:-68288648 Msa0220110:CDS
AGAAAATATCCTTCATGGAA+AGG 0.520550 2_1:+68290907 None:intergenic
TTGCATTTGCCAACTCAAGA+AGG 0.522030 2_1:+68289011 None:intergenic
CATTGTGTTGGTGTTAGAGT+TGG 0.522081 2_1:-68290692 Msa0220110:CDS
AATATCCTTCATGGAAAGGA+AGG 0.522272 2_1:+68290911 None:intergenic
GCACATTGTTATAGATACTA+GGG 0.527794 2_1:+68289790 None:intergenic
CCAGAGAAGGAGAAGTTGAA+GGG 0.532334 2_1:-68289114 Msa0220110:CDS
TTCAAGCAAAAGAGCTGCAA+AGG 0.532457 2_1:-68288588 Msa0220110:CDS
TGCAAAGGGAATTTATTGAC+AGG 0.536331 2_1:-68288573 Msa0220110:intron
GTCTATGATAAACTCATGGA+AGG 0.537912 2_1:-68289681 Msa0220110:CDS
GAATGAAGACCTGATACATA+AGG 0.540387 2_1:+68287583 None:intergenic
GACAAAGCTAAATTTCCTAA+AGG 0.549896 2_1:-68289829 Msa0220110:CDS
TATAGTCGTTTCTTTGCAGT+AGG 0.552503 2_1:-68289043 Msa0220110:CDS
GCCCCATTATTAGCCTTCTG+TGG 0.553177 2_1:+68288056 None:intergenic
TAGCTTTGTCTCAGAAACGC+TGG 0.563749 2_1:+68289842 None:intergenic
AAAATAAATTTGTGACTGCA+AGG 0.563842 2_1:+68287799 None:intergenic
AGCTTTGTCTCAGAAACGCT+GGG 0.565578 2_1:+68289843 None:intergenic
AGAAAGGGTGGAGCCACAGA+AGG 0.570202 2_1:-68288069 Msa0220110:CDS
TCAAGCAAAAGAGCTGCAAA+GGG 0.580848 2_1:-68288587 Msa0220110:CDS
TTGTTATAGATACTAGGGAT+TGG 0.585601 2_1:+68289795 None:intergenic
GATTCCTCGTACCATTGTGT+TGG 0.585869 2_1:-68290704 Msa0220110:CDS
GGAAGGACAAAATTCAGAGA+AGG 0.589864 2_1:+68290928 None:intergenic
GATTAAGAAAAGGCGTGTCA+AGG 0.595646 2_1:+68287952 None:intergenic
ACTGTACTTGGTTTACATTG+TGG 0.597011 2_1:-68287890 Msa0220110:three_prime_UTR
TCATCTATTCCTTTAATACA+CGG 0.603629 2_1:-68287606 Msa0220110:three_prime_UTR
GAAGTTGGAAGATTGGGCTA+AGG 0.605561 2_1:-68289170 Msa0220110:CDS
TGGGGCCATTACAAATTGAG+TGG 0.608088 2_1:-68288039 Msa0220110:exon
CCAGCTTGGAAAGCAGCATA+CGG 0.608856 2_1:+68288611 None:intergenic
CAGAGAAGGAGAAGTTGAAG+GGG 0.615968 2_1:-68289113 Msa0220110:CDS
TGATCTTAATATGCACATTG+TGG 0.621344 2_1:+68287553 None:intergenic
TGACAAGGGTGAACAAATTG+TGG 0.622302 2_1:+68287850 None:intergenic
GGAAGGGTATTCTAGTGAAG+AGG 0.630073 2_1:-68289664 Msa0220110:CDS
TTCTTGCTTATCCAACTCAG+TGG 0.633736 2_1:+68287930 None:intergenic
GGGGCCATTACAAATTGAGT+GGG 0.634138 2_1:-68288038 Msa0220110:exon
ACATATCAGAACTTGAAGCA+AGG 0.636756 2_1:+68290741 None:intergenic
AAGGATAAGAAATCTTCACT+TGG 0.639221 2_1:+68287971 None:intergenic
GAAACGAGTAGAAGACAAAG+TGG 0.651979 2_1:+68290763 None:intergenic
TTAATATGCACATTGTGGCA+TGG 0.655770 2_1:+68287558 None:intergenic
CAACTCTAACACCAACACAA+TGG 0.660091 2_1:+68290693 None:intergenic
TCTATGATAAACTCATGGAA+GGG 0.662278 2_1:-68289680 Msa0220110:CDS
GCCACAGAAGGCTAATAATG+GGG 0.663091 2_1:-68288057 Msa0220110:CDS
TACGTGCAAATTGTGTGACA+AGG 0.665234 2_1:+68287835 None:intergenic
GCCAACATAACAGCTTTGTG+TGG 0.674098 2_1:-68288680 Msa0220110:intron
AAACGAGTAGAAGACAAAGT+GGG 0.682984 2_1:+68290764 None:intergenic
AACACCAACACAATGGTACG+AGG 0.686845 2_1:+68290700 None:intergenic
ACGTGCAAATTGTGTGACAA+GGG 0.717029 2_1:+68287836 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATATAAGCTTTGAAAA+TGG + chr2_1:68288772-68288791 None:intergenic 15.0%
!! GAGTAAATAACTTTATATTT+CGG - chr2_1:68290665-68290684 Msa0220110:CDS 15.0%
!! AAAGTATAAGGAAGAAAAAA+AGG + chr2_1:68287418-68287437 None:intergenic 20.0%
!!! ATATGTTTAGGTTATTTTAG+TGG - chr2_1:68287990-68288009 Msa0220110:three_prime_UTR 20.0%
!! TGAATCTTATTATTGTTAGT+TGG - chr2_1:68288507-68288526 Msa0220110:intron 20.0%
!! AATAAAGAACAATATAGCAA+AGG + chr2_1:68288845-68288864 None:intergenic 20.0%
!! GATTTATGATAGTTAATCTT+TGG - chr2_1:68289697-68289716 Msa0220110:CDS 20.0%
!! AATTTACTATCATCAGTTAT+TGG - chr2_1:68290724-68290743 Msa0220110:CDS 20.0%
!! TTGTAATAATTGTAAACCTA+TGG + chr2_1:68290911-68290930 None:intergenic 20.0%
!!! TATCTAAGAACACTATTTTA+AGG - chr2_1:68290946-68290965 Msa0220110:five_prime_UTR 20.0%
!!! GGTTTGTGTTTTTGTTAATT+TGG - chr2_1:68287778-68287797 Msa0220110:three_prime_UTR 25.0%
!!! TCCAAATCAAGTTTTAGAAA+AGG - chr2_1:68287802-68287821 Msa0220110:three_prime_UTR 25.0%
!!! CCAAATCAAGTTTTAGAAAA+GGG - chr2_1:68287803-68287822 Msa0220110:three_prime_UTR 25.0%
! TCTCAGTTCAACAAAAATAA+GGG + chr2_1:68288235-68288254 None:intergenic 25.0%
! ATCTCAGTTCAACAAAAATA+AGG + chr2_1:68288236-68288255 None:intergenic 25.0%
! TTATTATTGTTAGTTGGTCA+TGG - chr2_1:68288513-68288532 Msa0220110:intron 25.0%
! TATTATTGTTAGTTGGTCAT+GGG - chr2_1:68288514-68288533 Msa0220110:intron 25.0%
! AGCTTATATTAATGCATTGA+AGG - chr2_1:68288779-68288798 Msa0220110:intron 25.0%
!! ATTTTCAATCATTGAGTCAA+AGG + chr2_1:68288893-68288912 None:intergenic 25.0%
!!! ATATGTTTTTGCTTAGTACT+TGG - chr2_1:68289109-68289128 Msa0220110:CDS 25.0%
! TAACAAGAAAATTCATCTGA+AGG - chr2_1:68289137-68289156 Msa0220110:CDS 25.0%
! TTATTGAAGTTGAACCTATA+AGG - chr2_1:68289522-68289541 Msa0220110:intron 25.0%
! AAATAAGAACTAGACCTTAT+AGG + chr2_1:68289539-68289558 None:intergenic 25.0%
! ATCACTTCAAACTACTTTAT+TGG + chr2_1:68289580-68289599 None:intergenic 25.0%
!! AGTAGTTTGAAGTGATTAAA+TGG - chr2_1:68289584-68289603 Msa0220110:intron 25.0%
!!! TAAGTGTGTGTTTGATTTTA+CGG - chr2_1:68289960-68289979 Msa0220110:intron 25.0%
!!! ATTAGACTTTAACTTGTGAA+TGG + chr2_1:68290161-68290180 None:intergenic 25.0%
!!! ATTAGACTTTAACTTGTGAA+TGG + chr2_1:68290161-68290180 None:intergenic 25.0%
!!! TATATGTTTTTTTTTACCCC+AGG - chr2_1:68290292-68290311 Msa0220110:intron 25.0%
!!! ATATGTTTTTTTTTACCCCA+GGG - chr2_1:68290293-68290312 Msa0220110:intron 25.0%
! AAAATAAATTTGTGACTGCA+AGG + chr2_1:68290605-68290624 None:intergenic 25.0%
! CCATACAACTTTATAATAGA+AGG + chr2_1:68290775-68290794 None:intergenic 25.0%
! CCTTCTATTATAAAGTTGTA+TGG - chr2_1:68290772-68290791 Msa0220110:CDS 25.0%
! TCATCTATTCCTTTAATACA+CGG - chr2_1:68290795-68290814 Msa0220110:CDS 25.0%
TGTGTTGGAAACAAAGTATA+AGG + chr2_1:68287430-68287449 None:intergenic 30.0%
TGCTTTCAAAACATTTGTGT+TGG + chr2_1:68287445-68287464 None:intergenic 30.0%
AGAAAATATCCTTCATGGAA+AGG + chr2_1:68287497-68287516 None:intergenic 30.0%
!! GTACTTTCAGTTTCTAGTTA+TGG - chr2_1:68287561-68287580 Msa0220110:three_prime_UTR 30.0%
! GTTCTGATATGTTTGGAATT+CGG - chr2_1:68287671-68287690 Msa0220110:three_prime_UTR 30.0%
!!! CCCTTTTCTAAAACTTGATT+TGG + chr2_1:68287806-68287825 None:intergenic 30.0%
!! ATCCTTTTTGGCATATGTTT+AGG - chr2_1:68287978-68287997 Msa0220110:three_prime_UTR 30.0%
AACCTAAACATATGCCAAAA+AGG + chr2_1:68287983-68288002 None:intergenic 30.0%
TTTGAGCAGTTTATAAAGAC+TGG + chr2_1:68288059-68288078 None:intergenic 30.0%
TAAACTGCTCAAAACTCTAA+TGG - chr2_1:68288066-68288085 Msa0220110:CDS 30.0%
AAGTCATTGTCTCAATTGTA+AGG + chr2_1:68288138-68288157 None:intergenic 30.0%
GTCAAAAAACTTGGGAAAAA+CGG - chr2_1:68288173-68288192 Msa0220110:intron 30.0%
CAATGTCTTTCGAAAATAGA+AGG + chr2_1:68288297-68288316 None:intergenic 30.0%
ATCGTTGGAAATTTCAATGA+TGG + chr2_1:68288324-68288343 None:intergenic 30.0%
! CATATGTTTTGCAAACTCTA+TGG + chr2_1:68288391-68288410 None:intergenic 30.0%
TTTAACACCTACTGCAAAAA+AGG - chr2_1:68288458-68288477 Msa0220110:intron 30.0%
GACAAAGCTAAATTTCCTAA+AGG - chr2_1:68288572-68288591 Msa0220110:intron 30.0%
TTGTTATAGATACTAGGGAT+TGG + chr2_1:68288609-68288628 None:intergenic 30.0%
GCACATTGTTATAGATACTA+GGG + chr2_1:68288614-68288633 None:intergenic 30.0%
AGCACATTGTTATAGATACT+AGG + chr2_1:68288615-68288634 None:intergenic 30.0%
GAGCAAATACAGAATCATAT+TGG + chr2_1:68288686-68288705 None:intergenic 30.0%
TATGATTCTGTATTTGCTCT+TGG - chr2_1:68288687-68288706 Msa0220110:intron 30.0%
TCTATGATAAACTCATGGAA+GGG - chr2_1:68288721-68288740 Msa0220110:intron 30.0%
TATGATGCTAACTTAGATTC+TGG + chr2_1:68289044-68289063 None:intergenic 30.0%
! GTTTTCTATTCTTTCCAGTT+GGG + chr2_1:68289072-68289091 None:intergenic 30.0%
! AGTTTTCTATTCTTTCCAGT+TGG + chr2_1:68289073-68289092 None:intergenic 30.0%
! AGAACCAACAATTTTAGACA+AGG - chr2_1:68289414-68289433 Msa0220110:intron 30.0%
CATCGTGCATGATTTATAAT+TGG - chr2_1:68289456-68289475 Msa0220110:intron 30.0%
TACTTTATTGGAACTTCTAG+AGG + chr2_1:68289568-68289587 None:intergenic 30.0%
GCATCTTTATGAATGTATGT+AGG - chr2_1:68289675-68289694 Msa0220110:CDS 30.0%
TATAGAGTAGATGGAATATC+AGG + chr2_1:68290126-68290145 None:intergenic 30.0%
ACTCAGATTTATAGAGTAGA+TGG + chr2_1:68290135-68290154 None:intergenic 30.0%
GATTTACAATTACAGCTTGA+TGG - chr2_1:68290242-68290261 Msa0220110:intron 30.0%
AGAAGAAGAAAAGAGAAGAA+AGG - chr2_1:68290316-68290335 Msa0220110:intron 30.0%
GAAGAAGAAAAGAGAAGAAA+GGG - chr2_1:68290317-68290336 Msa0220110:intron 30.0%
TTTACCCACTCAATTTGTAA+TGG + chr2_1:68290370-68290389 None:intergenic 30.0%
AAGGATAAGAAATCTTCACT+TGG + chr2_1:68290433-68290452 None:intergenic 30.0%
ATGATTTCTCATACTGTACT+TGG - chr2_1:68290499-68290518 Msa0220110:intron 30.0%
TCAATTCGACATCAATTTCA+TGG - chr2_1:68290697-68290716 Msa0220110:CDS 30.0%
! AAGGAGAAAAATGAAAGTGT+TGG + chr2_1:68290756-68290775 None:intergenic 30.0%
TGATCTTAATATGCACATTG+TGG + chr2_1:68290851-68290870 None:intergenic 30.0%
AATATCCTTCATGGAAAGGA+AGG + chr2_1:68287493-68287512 None:intergenic 35.0%
GACTCAGAAAATATCCTTCA+TGG + chr2_1:68287502-68287521 None:intergenic 35.0%
AAACGAGTAGAAGACAAAGT+GGG + chr2_1:68287640-68287659 None:intergenic 35.0%
ACATATCAGAACTTGAAGCA+AGG + chr2_1:68287663-68287682 None:intergenic 35.0%
! GCTTCAAGTTCTGATATGTT+TGG - chr2_1:68287664-68287683 Msa0220110:three_prime_UTR 35.0%
! TGGCAATTCTGCTTCTAAAA+TGG - chr2_1:68287729-68287748 Msa0220110:three_prime_UTR 35.0%
AGTTAGTTGCATGCATGATT+AGG - chr2_1:68287914-68287933 Msa0220110:three_prime_UTR 35.0%
TCTTATGTACCGTAATCTCT+TGG - chr2_1:68287953-68287972 Msa0220110:three_prime_UTR 35.0%
CTTATGTACCGTAATCTCTT+GGG - chr2_1:68287954-68287973 Msa0220110:three_prime_UTR 35.0%
TTATGTACCGTAATCTCTTG+GGG - chr2_1:68287955-68287974 Msa0220110:three_prime_UTR 35.0%
TTTAGTGGTGAGTTCTATTG+TGG - chr2_1:68288005-68288024 Msa0220110:three_prime_UTR 35.0%
CTATTGTGGATCACATTGAT+AGG - chr2_1:68288019-68288038 Msa0220110:three_prime_UTR 35.0%
TCACATTGATAGGTAGTTCA+CGG - chr2_1:68288029-68288048 Msa0220110:exon 35.0%
TCTCAATTGTAAGGACAAGA+AGG + chr2_1:68288129-68288148 None:intergenic 35.0%
!!! TCCCAAGTTTTTTGACAAAC+CGG + chr2_1:68288169-68288188 None:intergenic 35.0%
!!! AACTCTATGGTGGACTATTT+TGG + chr2_1:68288378-68288397 None:intergenic 35.0%
! ATGTTTTGCAAACTCTATGG+TGG + chr2_1:68288388-68288407 None:intergenic 35.0%
!!! TAGTCTTCCTTTTTTGCAGT+AGG + chr2_1:68288468-68288487 None:intergenic 35.0%
TTGGTCGTTTATATGCCTTT+AGG + chr2_1:68288590-68288609 None:intergenic 35.0%
TATCTATAACAATGTGCTGC+AGG - chr2_1:68288617-68288636 Msa0220110:CDS 35.0%
CACTGTCTATGATAAACTCA+TGG - chr2_1:68288716-68288735 Msa0220110:intron 35.0%
GTCTATGATAAACTCATGGA+AGG - chr2_1:68288720-68288739 Msa0220110:intron 35.0%
TCATGAAACCTGTATTGTTC+TGG + chr2_1:68288810-68288829 None:intergenic 35.0%
CAATCATTGAGTCAAAGGTT+TGG + chr2_1:68288888-68288907 None:intergenic 35.0%
AGCATCATATTATTCCCAAC+TGG - chr2_1:68289055-68289074 Msa0220110:CDS 35.0%
ATGCAAAGAAGTTGGAAGAT+TGG - chr2_1:68289224-68289243 Msa0220110:intron 35.0%
TGCAAAGAAGTTGGAAGATT+GGG - chr2_1:68289225-68289244 Msa0220110:intron 35.0%
! GTTGAGTTTTTATCCAGAGA+AGG - chr2_1:68289274-68289293 Msa0220110:intron 35.0%
AAGGATATTGCAAAAAGAGC+AGG - chr2_1:68289316-68289335 Msa0220110:intron 35.0%
TATAGTCGTTTCTTTGCAGT+AGG - chr2_1:68289358-68289377 Msa0220110:intron 35.0%
! GCTACCTTGTCTAAAATTGT+TGG + chr2_1:68289421-68289440 None:intergenic 35.0%
TGCAAAGGGAATTTATTGAC+AGG - chr2_1:68289828-68289847 Msa0220110:CDS 35.0%
ACTCAGATTTATGGAGTAGA+TGG + chr2_1:68290186-68290205 None:intergenic 35.0%
GAATGGCATACTCAGATTTA+TGG + chr2_1:68290195-68290214 None:intergenic 35.0%
!! CAACTCAGTGGATTAAGAAA+AGG + chr2_1:68290462-68290481 None:intergenic 35.0%
! CTTTTCTTAATCCACTGAGT+TGG - chr2_1:68290460-68290479 Msa0220110:intron 35.0%
ACTGTACTTGGTTTACATTG+TGG - chr2_1:68290511-68290530 Msa0220110:intron 35.0%
CTAAAAACAAGCAAGCCTAA+AGG - chr2_1:68290632-68290651 Msa0220110:intron 35.0%
TACTCAGAATGTATGCCTTT+AGG + chr2_1:68290650-68290669 None:intergenic 35.0%
TACATAAGGCCGTGTATTAA+AGG + chr2_1:68290807-68290826 None:intergenic 35.0%
GAATGAAGACCTGATACATA+AGG + chr2_1:68290821-68290840 None:intergenic 35.0%
TTAATATGCACATTGTGGCA+TGG + chr2_1:68290846-68290865 None:intergenic 35.0%
! TTTAAGGCTTGTGAGTTCAA+TGG - chr2_1:68290962-68290981 Msa0220110:five_prime_UTR 35.0%
GGAAGGACAAAATTCAGAGA+AGG + chr2_1:68287476-68287495 None:intergenic 40.0%
TTTGTCCTTCCTTTCCATGA+AGG - chr2_1:68287485-68287504 Msa0220110:three_prime_UTR 40.0%
GAAACGAGTAGAAGACAAAG+TGG + chr2_1:68287641-68287660 None:intergenic 40.0%
CAACTCTAACACCAACACAA+TGG + chr2_1:68287711-68287730 None:intergenic 40.0%
!! CATTGTGTTGGTGTTAGAGT+TGG - chr2_1:68287709-68287728 Msa0220110:three_prime_UTR 40.0%
AAAGGATCCCCAAGAGATTA+CGG + chr2_1:68287965-68287984 None:intergenic 40.0%
! AATCTCTTGGGGATCCTTTT+TGG - chr2_1:68287966-68287985 Msa0220110:three_prime_UTR 40.0%
GACAATGACTTGATAAGTGC+CGG - chr2_1:68288147-68288166 Msa0220110:intron 40.0%
!! TGCCGGTTTGTCAAAAAACT+TGG - chr2_1:68288164-68288183 Msa0220110:intron 40.0%
!! GCCGGTTTGTCAAAAAACTT+GGG - chr2_1:68288165-68288184 Msa0220110:intron 40.0%
GACTGGTACTTGAAAATCGT+TGG + chr2_1:68288339-68288358 None:intergenic 40.0%
!!! CTATGGTGGACTATTTTGGT+AGG + chr2_1:68288374-68288393 None:intergenic 40.0%
ATATGCATGAGTGTACGAGA+TGG - chr2_1:68288406-68288425 Msa0220110:intron 40.0%
AGGAAGATCCAGAACAATAC+AGG - chr2_1:68288799-68288818 Msa0220110:intron 40.0%
AACAAACTCTGGATTGTGTG+CGG + chr2_1:68289019-68289038 None:intergenic 40.0%
AGATTCTGGCAAACAAACTC+TGG + chr2_1:68289030-68289049 None:intergenic 40.0%
CTTTGCATCTACTCTGTAGA+GGG + chr2_1:68289212-68289231 None:intergenic 40.0%
TCTTTGCATCTACTCTGTAG+AGG + chr2_1:68289213-68289232 None:intergenic 40.0%
CAGAGTAGATGCAAAGAAGT+TGG - chr2_1:68289216-68289235 Msa0220110:intron 40.0%
!! AGAAGTTGAAGGGGTTTTGA+AGG - chr2_1:68289297-68289316 Msa0220110:intron 40.0%
TGCAAAAAGAGCAGGAGAAA+AGG - chr2_1:68289324-68289343 Msa0220110:intron 40.0%
GCAAAAAGAGCAGGAGAAAA+GGG - chr2_1:68289325-68289344 Msa0220110:intron 40.0%
!! TCTTTTTCGCCTTCTTGAGT+TGG - chr2_1:68289381-68289400 Msa0220110:intron 40.0%
TTGCATTTGCCAACTCAAGA+AGG + chr2_1:68289393-68289412 None:intergenic 40.0%
AAGGTAGCCCAATTCATTCA+AGG - chr2_1:68289433-68289452 Msa0220110:intron 40.0%
CACGATGCCTTGAATGAATT+GGG + chr2_1:68289443-68289462 None:intergenic 40.0%
TCGTAGGAGGAAAACATATC+AGG + chr2_1:68289616-68289635 None:intergenic 40.0%
! TTGCTACTTAGAGCAATCGT+AGG + chr2_1:68289632-68289651 None:intergenic 40.0%
!! TCGACAAAAGAAGCGTTGAT+CGG - chr2_1:68289753-68289772 Msa0220110:CDS 40.0%
TTCAAGCAAAAGAGCTGCAA+AGG - chr2_1:68289813-68289832 Msa0220110:CDS 40.0%
TCAAGCAAAAGAGCTGCAAA+GGG - chr2_1:68289814-68289833 Msa0220110:CDS 40.0%
! TCTCTTTTCTTCTTCTCCCT+GGG + chr2_1:68290312-68290331 None:intergenic 40.0%
! TTCTCTTTTCTTCTTCTCCC+TGG + chr2_1:68290313-68290332 None:intergenic 40.0%
GAAGAAAAGAGAAGAAAGGG+TGG - chr2_1:68290320-68290339 Msa0220110:intron 40.0%
AGCCACAGAAGGCTAATAAT+GGG - chr2_1:68290343-68290362 Msa0220110:intron 40.0%
! GATTAAGAAAAGGCGTGTCA+AGG + chr2_1:68290452-68290471 None:intergenic 40.0%
TTCTTGCTTATCCAACTCAG+TGG + chr2_1:68290474-68290493 None:intergenic 40.0%
TGACAAGGGTGAACAAATTG+TGG + chr2_1:68290554-68290573 None:intergenic 40.0%
ACGTGCAAATTGTGTGACAA+GGG + chr2_1:68290568-68290587 None:intergenic 40.0%
TACGTGCAAATTGTGTGACA+AGG + chr2_1:68290569-68290588 None:intergenic 40.0%
! AATACACGGCCTTATGTATC+AGG - chr2_1:68290809-68290828 Msa0220110:CDS 40.0%
CTATGGCAATAACTCACACT+TGG + chr2_1:68290894-68290913 None:intergenic 40.0%
CAAGTGTGAGTTATTGCCAT+AGG - chr2_1:68290892-68290911 Msa0220110:five_prime_UTR 40.0%
GATTCCTCGTACCATTGTGT+TGG - chr2_1:68287697-68287716 Msa0220110:three_prime_UTR 45.0%
AACACCAACACAATGGTACG+AGG + chr2_1:68287704-68287723 None:intergenic 45.0%
CAATGCATGTCTTCTGTCAC+AGG - chr2_1:68287757-68287776 Msa0220110:three_prime_UTR 45.0%
CATTGATAGGTAGTTCACGG+TGG - chr2_1:68288032-68288051 Msa0220110:exon 45.0%
AAGTCATCGTCTGAGTGACA+AGG - chr2_1:68288261-68288280 Msa0220110:intron 45.0%
! TTTTGGTAGGTGGTCTACAG+TGG + chr2_1:68288361-68288380 None:intergenic 45.0%
!!! TGGTGGACTATTTTGGTAGG+TGG + chr2_1:68288371-68288390 None:intergenic 45.0%
! AGCTTTGTCTCAGAAACGCT+GGG + chr2_1:68288561-68288580 None:intergenic 45.0%
!! TAGCTTTGTCTCAGAAACGC+TGG + chr2_1:68288562-68288581 None:intergenic 45.0%
!! GGAAGGGTATTCTAGTGAAG+AGG - chr2_1:68288737-68288756 Msa0220110:intron 45.0%
CTTGATCAGATGGTCTTCAG+TGG + chr2_1:68288957-68288976 None:intergenic 45.0%
TACAGCTGTCAACCACATCA+GGG + chr2_1:68288990-68289009 None:intergenic 45.0%
GAAGTTGGAAGATTGGGCTA+AGG - chr2_1:68289231-68289250 Msa0220110:intron 45.0%
GGCTCAAAACTCAACTTCAC+TGG - chr2_1:68289252-68289271 Msa0220110:intron 45.0%
TCCAGAGAAGGAGAAGTTGA+AGG - chr2_1:68289286-68289305 Msa0220110:intron 45.0%
CCAGAGAAGGAGAAGTTGAA+GGG - chr2_1:68289287-68289306 Msa0220110:intron 45.0%
CAGAGAAGGAGAAGTTGAAG+GGG - chr2_1:68289288-68289307 Msa0220110:intron 45.0%
GCACGATGCCTTGAATGAAT+TGG + chr2_1:68289444-68289463 None:intergenic 45.0%
CTACTTAGAGCAATCGTAGG+AGG + chr2_1:68289629-68289648 None:intergenic 45.0%
! GCCAACATAACAGCTTTGTG+TGG - chr2_1:68289721-68289740 Msa0220110:CDS 45.0%
GCCACACAAAGCTGTTATGT+TGG + chr2_1:68289725-68289744 None:intergenic 45.0%
!! CGACAAAAGAAGCGTTGATC+GGG - chr2_1:68289754-68289773 Msa0220110:CDS 45.0%
! CTCTTTTGCTTGAACCAGCT+TGG + chr2_1:68289807-68289826 None:intergenic 45.0%
CAGAGAGGAGAACAACTGAA+GGG + chr2_1:68289875-68289894 None:intergenic 45.0%
ACAGAGAGGAGAACAACTGA+AGG + chr2_1:68289876-68289895 None:intergenic 45.0%
TGTTCTCCTCTCTGTCATCA+TGG - chr2_1:68289881-68289900 Msa0220110:intron 45.0%
GAAAAGCCATGATGACAGAG+AGG + chr2_1:68289890-68289909 None:intergenic 45.0%
! CTCTTTTCTTCTTCTCCCTG+GGG + chr2_1:68290311-68290330 None:intergenic 45.0%
GAGCCACAGAAGGCTAATAA+TGG - chr2_1:68290342-68290361 Msa0220110:intron 45.0%
GCCACAGAAGGCTAATAATG+GGG - chr2_1:68290344-68290363 Msa0220110:intron 45.0%
TGGGGCCATTACAAATTGAG+TGG - chr2_1:68290362-68290381 Msa0220110:intron 45.0%
GGGGCCATTACAAATTGAGT+GGG - chr2_1:68290363-68290382 Msa0220110:intron 45.0%
!! ATAATAATAACAATTAATAA+CGG - chr2_1:68288920-68288939 Msa0220110:intron 5.0%
!! ACCTCTGAAGTAGACGCTCT+CGG - chr2_1:68288102-68288121 Msa0220110:intron 50.0%
TCATCGTCTGAGTGACAAGG+TGG - chr2_1:68288264-68288283 Msa0220110:intron 50.0%
TGCATGAGTGTACGAGATGG+TGG - chr2_1:68288409-68288428 Msa0220110:intron 50.0%
GCATGAGTGTACGAGATGGT+GGG - chr2_1:68288410-68288429 Msa0220110:intron 50.0%
CTGTTGCGGTCTTGATCAGA+TGG + chr2_1:68288967-68288986 None:intergenic 50.0%
CTACAGCTGTCAACCACATC+AGG + chr2_1:68288991-68289010 None:intergenic 50.0%
CCCTTCAACTTCTCCTTCTC+TGG + chr2_1:68289290-68289309 None:intergenic 50.0%
!! AAGAAGCGTTGATCGGGACT+TGG - chr2_1:68289760-68289779 Msa0220110:CDS 50.0%
CCAGCTTGGAAAGCAGCATA+CGG + chr2_1:68289793-68289812 None:intergenic 50.0%
!! GCCCCATTATTAGCCTTCTG+TGG + chr2_1:68290348-68290367 None:intergenic 50.0%
!! ACCGAGAGCGTCTACTTCAG+AGG + chr2_1:68288106-68288125 None:intergenic 55.0%
GTAGGTGGTCTACAGTGGAC+TGG + chr2_1:68288356-68288375 None:intergenic 55.0%
CAACCACATCAGGGCTGTTG+CGG + chr2_1:68288981-68289000 None:intergenic 55.0%
!! CCGTATGCTGCTTTCCAAGC+TGG - chr2_1:68289790-68289809 Msa0220110:CDS 55.0%
AGAAAGGGTGGAGCCACAGA+AGG - chr2_1:68290332-68290351 Msa0220110:intron 55.0%
AGACCGCAACAGCCCTGATG+TGG - chr2_1:68288975-68288994 Msa0220110:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 68287397 68291026 68287397 ID=Msa0220110;Name=Msa0220110
chr2_1 mRNA 68287397 68291026 68287397 ID=Msa0220110-mRNA-1;Parent=Msa0220110;Name=Msa0220110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=183|0.75|0.8|1|1|1|5|646|297
chr2_1 exon 68287397 68288109 68287397 ID=Msa0220110-mRNA-1:exon:19334;Parent=Msa0220110-mRNA-1
chr2_1 exon 68288574 68288689 68288574 ID=Msa0220110-mRNA-1:exon:19333;Parent=Msa0220110-mRNA-1
chr2_1 exon 68288988 68289204 68288988 ID=Msa0220110-mRNA-1:exon:19332;Parent=Msa0220110-mRNA-1
chr2_1 exon 68289603 68289897 68289603 ID=Msa0220110-mRNA-1:exon:19331;Parent=Msa0220110-mRNA-1
chr2_1 exon 68290645 68291026 68290645 ID=Msa0220110-mRNA-1:exon:19330;Parent=Msa0220110-mRNA-1
chr2_1 five_prime_UTR 68290844 68291026 68290844 ID=Msa0220110-mRNA-1:five_prime_utr;Parent=Msa0220110-mRNA-1
chr2_1 CDS 68290645 68290843 68290645 ID=Msa0220110-mRNA-1:cds;Parent=Msa0220110-mRNA-1
chr2_1 CDS 68289603 68289897 68289603 ID=Msa0220110-mRNA-1:cds;Parent=Msa0220110-mRNA-1
chr2_1 CDS 68288988 68289204 68288988 ID=Msa0220110-mRNA-1:cds;Parent=Msa0220110-mRNA-1
chr2_1 CDS 68288574 68288689 68288574 ID=Msa0220110-mRNA-1:cds;Parent=Msa0220110-mRNA-1
chr2_1 CDS 68288043 68288109 68288043 ID=Msa0220110-mRNA-1:cds;Parent=Msa0220110-mRNA-1
chr2_1 three_prime_UTR 68287397 68288042 68287397 ID=Msa0220110-mRNA-1:three_prime_utr;Parent=Msa0220110-mRNA-1
Gene Sequence

>Msa0220110

ATGGCTGCACTAACTTCTTTGTCATTCTCAGCAACTACTCAATGCTCACAGAGAAAACCCACTTTGTCTTCTACTCGTTTCCTTGCTTCAAGTTCTGATATGTTTGGAATTCGGACAGATTCCTCGTACCATTGTGTTGGTGTTAGAGTTGGCAATTCTGCTTCTAAAATGGTTATTCAATGCATGTCTTCTGTCACAGTTGGTCATGGGTTATCATCTACTGCAGATGTTCCCAGCGTTTCTGAGACAAAGCTAAATTTCCTAAAGGCATATAAACGACCAATCCCTAGTATCTATAACAATGTGCTGCAGGAGCTCATTGTTCAACATCATTTAATGAGATACAAGACATCATACCAATATGATTCTGTATTTGCTCTTGGTTTTGTCACTGTCTATGATAAACTCATGGAAGGGTATTCTAGTGAAGAGGAGCGAGATACCATTTTCAAAGCTTATATTAATGCATTGAAGGAAGATCCAGAACAATACAGAGTAGATGCAAAGAAGTTGGAAGATTGGGCTAAGGCTCAAAACTCAACTTCACTGGTTGAGTTTTTATCCAGAGAAGGAGAAGTTGAAGGGGTTTTGAAGGATATTGCAAAAAGAGCAGGAGAAAAGGGTGAATTCAGTTATAGTCGTTTCTTTGCAGTAGGTCTTTTTCGCCTTCTTGAGTTGGCAAATGCAACAGAACCAACAATTTTAGACAAGCTTTGTGTGGCTTTGAACATCGACAAAAGAAGCGTTGATCGGGACTTGGATGTGTACCGTATGCTGCTTTCCAAGCTGGTTCAAGCAAAAGAGCTGCAAAGGGAATTTATTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGTGGAGCCACAGAAGGCTAATAATGGGGCCATTACAAATTGA

Protein sequence

>Msa0220110

MAALTSLSFSATTQCSQRKPTLSSTRFLASSSDMFGIRTDSSYHCVGVRVGNSASKMVIQCMSSVTVGHGLSSTADVPSVSETKLNFLKAYKRPIPSIYNNVLQELIVQHHLMRYKTSYQYDSVFALGFVTVYDKLMEGYSSEEERDTIFKAYINALKEDPEQYRVDAKKLEDWAKAQNSTSLVEFLSREGEVEGVLKDIAKRAGEKGEFSYSRFFAVGLFRLLELANATEPTILDKLCVALNIDKRSVDRDLDVYRMLLSKLVQAKELQREFIDREKKKREERVEPQKANNGAITN*