AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0296000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296000 MtrunA17_Chr2g0318371 92.531 241 16 1 1 241 1 239 2.08e-155 431
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296000 AT4G27390.1 67.143 140 44 2 104 241 96 235 3.66e-65 202

Find 78 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGCCGTGGCTTGCATTTC+CGG 0.188813 2_3:-48835773 Msa0296000:three_prime_UTR
TGGTAGCACTGCTAGGATTT+TGG 0.190883 2_3:-48838462 Msa0296000:CDS
AGTAAACTTTGGGTCTAAAT+TGG 0.212593 2_3:+48838670 None:intergenic
GGAAATCTTGCTCTGGCTGC+TGG 0.232538 2_3:-48838440 Msa0296000:CDS
GACATGGGGAATATTGTATA+TGG 0.240633 2_3:+48838776 None:intergenic
GTAAAGAATAATAAAGGATT+TGG 0.246820 2_3:-48838518 Msa0296000:CDS
AACCACAGCTTACCAGAAAA+AGG 0.260992 2_3:+48837002 None:intergenic
TGGCAAGTGTTCGTTGGATT+TGG 0.278594 2_3:-48838977 Msa0296000:five_prime_UTR
TGAAAATCATTTCCACAGTT+TGG 0.296271 2_3:+48837186 None:intergenic
ATACCACACCTTTATTATCT+TGG 0.307638 2_3:-48835606 Msa0296000:three_prime_UTR
TTGATGCTATTGTTTCCATT+TGG 0.312053 2_3:-48838376 Msa0296000:CDS
TGTCTTGTATATGTTATCAT+TGG 0.317658 2_3:+48838712 None:intergenic
AAAGGATTTGGATTCAATAA+TGG 0.318678 2_3:-48838506 Msa0296000:CDS
TCAAACCAATCTACAACATT+TGG 0.326629 2_3:-48836836 Msa0296000:CDS
TGATGCTATTGTTTCCATTT+GGG 0.332028 2_3:-48838375 Msa0296000:intron
TGGGTGTATGTGGGAAGAAA+AGG 0.347214 2_3:-48838570 Msa0296000:CDS
TTTATGGCAGACAAGGATTC+TGG 0.347799 2_3:-48836668 Msa0296000:intron
AGAAGATTGAAGATACGTTT+TGG 0.349225 2_3:+48835579 None:intergenic
TAGGTCTTGGTGCTTTCCTC+TGG 0.355550 2_3:-48837374 Msa0296000:CDS
GTAAAATCTTAGTGTACTAA+TGG 0.358748 2_3:+48838804 None:intergenic
TTCAATAATGGTGGAGGTGG+TGG 0.377303 2_3:-48838494 Msa0296000:CDS
AAATTCTCGTTCAGTTAAAC+AGG 0.393778 2_3:-48835792 Msa0296000:three_prime_UTR
CTGCAATTCTTCATTTAAAG+TGG 0.395830 2_3:+48837046 None:intergenic
CTCTCAATGACTGGACAACT+TGG 0.412515 2_3:-48838407 Msa0296000:CDS
GGTGCTTTCCTCTGGTGGGC+AGG 0.422821 2_3:-48837366 Msa0296000:CDS
AGATGAAAAGAAGTAAACTT+TGG 0.428569 2_3:+48838659 None:intergenic
GTCTTGGTGCTTTCCTCTGG+TGG 0.432604 2_3:-48837371 Msa0296000:CDS
GATGAAAAGAAGTAAACTTT+GGG 0.436479 2_3:+48838660 None:intergenic
GGGTGTATGTGGGAAGAAAA+GGG 0.437123 2_3:-48838569 Msa0296000:CDS
TGTACTAATGGAGTTAGAAA+AGG 0.438306 2_3:+48838816 None:intergenic
GAAATCTTGCTCTGGCTGCT+GGG 0.441542 2_3:-48838439 Msa0296000:CDS
TTGGTAAACCAAGATAATAA+AGG 0.441920 2_3:+48835598 None:intergenic
GTCTTGTATATGTTATCATT+GGG 0.442530 2_3:+48838713 None:intergenic
CAATGACTGGACAACTTGGC+TGG 0.453870 2_3:-48838403 Msa0296000:CDS
CTTGTCCAAATGTTGTAGAT+TGG 0.454288 2_3:+48836831 None:intergenic
TATTCCCACACAGATCTTTG+CGG 0.454686 2_3:-48837412 Msa0296000:intron
GGGAAGAAAAGGGGTGCAAG+AGG 0.465614 2_3:-48838559 Msa0296000:CDS
TGTGTCAAATATCATCTTTG+AGG 0.485147 2_3:+48838895 None:intergenic
ACATGGGGAATATTGTATAT+GGG 0.494818 2_3:+48838777 None:intergenic
TCTTGGTGCTTTCCTCTGGT+GGG 0.507937 2_3:-48837370 Msa0296000:CDS
GGAGGTGGTGGAAGAGATGA+TGG 0.511206 2_3:-48838482 Msa0296000:CDS
GAATTGTACAAGAGTGGACA+TGG 0.518570 2_3:+48838760 None:intergenic
AGTTGAGAGCATGCAGGGAG+AGG 0.519424 2_3:-48838625 Msa0296000:CDS
GGAAGAAAAGGGGTGCAAGA+GGG 0.529776 2_3:-48838558 Msa0296000:CDS
TTAGTACCGATAGTAGGTCT+TGG 0.531029 2_3:-48837387 Msa0296000:CDS
TCGTTCAGTTAAACAGGCCG+TGG 0.531598 2_3:-48835786 Msa0296000:three_prime_UTR
TTGACTTATCTCTCAATGAC+TGG 0.532435 2_3:-48838416 Msa0296000:CDS
GTGCAAGAGGGAAAAGAGAG+TGG 0.534510 2_3:-48838546 Msa0296000:CDS
GGATTTGGATTCAATAATGG+TGG 0.539358 2_3:-48838503 Msa0296000:CDS
GTTTCAAGTTGAGAGCATGC+AGG 0.540331 2_3:-48838631 Msa0296000:CDS
TAAATTGGAGAAAGAAAAGG+TGG 0.540736 2_3:+48838685 None:intergenic
CCAACGAACACTTGCCACGT+TGG 0.541691 2_3:+48838983 None:intergenic
GGATTCAATAATGGTGGAGG+TGG 0.547149 2_3:-48838497 Msa0296000:CDS
CCAACGTGGCAAGTGTTCGT+TGG 0.553138 2_3:-48838983 Msa0296000:five_prime_UTR
TAATGTATTCTAGAGAGGAT+AGG 0.561442 2_3:-48835694 Msa0296000:three_prime_UTR
TTTGGATTCAATAATGGTGG+AGG 0.562087 2_3:-48838500 Msa0296000:CDS
GTCTAAATTGGAGAAAGAAA+AGG 0.563509 2_3:+48838682 None:intergenic
ACTCGTTGCGTCTTAAGCAC+CGG 0.567742 2_3:+48835754 None:intergenic
GATAGAGAATTGTACAAGAG+TGG 0.568164 2_3:+48838754 None:intergenic
GCGGTGTTAGTACCGATAGT+AGG 0.572577 2_3:-48837393 Msa0296000:CDS
GGTTTAGACATGTCGTCGAA+TGG 0.578641 2_3:+48838837 None:intergenic
TTGGAAAGAACAACATGTGA+AGG 0.580650 2_3:-48838958 Msa0296000:five_prime_UTR
TTTCAAGTTGAGAGCATGCA+GGG 0.582105 2_3:-48838630 Msa0296000:CDS
GAGATGATGGTAGCACTGCT+AGG 0.582418 2_3:-48838469 Msa0296000:CDS
CAGATTAATGTATTCTAGAG+AGG 0.585509 2_3:-48835699 Msa0296000:three_prime_UTR
GGTGTATGTGGGAAGAAAAG+GGG 0.588360 2_3:-48838568 Msa0296000:CDS
TGATGGTAATGAGTTTGTCA+AGG 0.603814 2_3:-48836873 Msa0296000:CDS
AGCACCGGAAATGCAAGCCA+CGG 0.609734 2_3:+48835769 None:intergenic
GTTAATTATACTTACTAACA+TGG 0.625795 2_3:+48836584 None:intergenic
TATATGCAGTGTCCAAACTG+TGG 0.630144 2_3:-48837198 Msa0296000:intron
AAACCAAGATAATAAAGGTG+TGG 0.634068 2_3:+48835603 None:intergenic
GCAGGTCGAGATATAATGAA+AGG 0.637002 2_3:-48837348 Msa0296000:CDS
TATCTCGACCTGCCCACCAG+AGG 0.654751 2_3:+48837358 None:intergenic
AATTGTACAAGAGTGGACAT+GGG 0.658045 2_3:+48838761 None:intergenic
ATTGTACAAGAGTGGACATG+GGG 0.667546 2_3:+48838762 None:intergenic
AAAGCACCAAGACCTACTAT+CGG 0.670888 2_3:+48837381 None:intergenic
AAATTGGAGAAAGAAAAGGT+GGG 0.722634 2_3:+48838686 None:intergenic
AAGGGTCCTTAAAACCAACG+TGG 0.803231 2_3:-48838997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+TGG - chr2_3:48837979-48837998 Msa0296000:intron 0.0%
!!! ATCGTTAAATTTATTTTAAT+GGG + chr2_3:48836361-48836380 None:intergenic 10.0%
!!! TATCGTTAAATTTATTTTAA+TGG + chr2_3:48836362-48836381 None:intergenic 10.0%
!! TATATAAATTCTACATTATT+AGG - chr2_3:48836908-48836927 Msa0296000:intron 10.0%
!!! GTTTTAGTAAAGAATAATAA+AGG - chr2_3:48836013-48836032 Msa0296000:intron 15.0%
!!! TCGTTAAATTTATTTTAATG+GGG + chr2_3:48836360-48836379 None:intergenic 15.0%
!! AAAAATTATTTACATTGAAC+AGG + chr2_3:48836992-48837011 None:intergenic 15.0%
!! AATAAAGAATAAAGAGATAA+GGG + chr2_3:48837808-48837827 None:intergenic 15.0%
!! TAATAAAGAATAAAGAGATA+AGG + chr2_3:48837809-48837828 None:intergenic 15.0%
!!! AGATTTGTATTTAATTTTTC+AGG - chr2_3:48838706-48838725 Msa0296000:CDS 15.0%
!!! GATTTGTATTTAATTTTTCA+GGG - chr2_3:48838707-48838726 Msa0296000:CDS 15.0%
!! GTAAAGAATAATAAAGGATT+TGG - chr2_3:48836019-48836038 Msa0296000:intron 20.0%
!! GTTAAACCATTATAAATACA+AGG - chr2_3:48836255-48836274 Msa0296000:intron 20.0%
!!! TCTTTAAAGTGAATAAGTAA+AGG + chr2_3:48836391-48836410 None:intergenic 20.0%
!!! TTTCTTAAATTATGTTTTCC+CGG - chr2_3:48836419-48836438 Msa0296000:intron 20.0%
!!! GAATTTACATGTATAAGTTT+TGG + chr2_3:48837074-48837093 None:intergenic 20.0%
!! TTATACGTATAAAATAACGA+TGG + chr2_3:48837456-48837475 None:intergenic 20.0%
!!! TTTATTTTGATATCAGTTGA+TGG - chr2_3:48837647-48837666 Msa0296000:intron 20.0%
!! GTTAATTATACTTACTAACA+TGG + chr2_3:48837956-48837975 None:intergenic 20.0%
!!! AATATATTTGCTGAATACTA+AGG + chr2_3:48838625-48838644 None:intergenic 20.0%
!! ATCTCAATAAAACTATTTAG+TGG + chr2_3:48838690-48838709 None:intergenic 20.0%
!! TTACAAAAAACAATACTTGT+GGG - chr2_3:48838988-48839007 Msa0296000:five_prime_UTR 20.0%
! GTAAAATCTTAGTGTACTAA+TGG + chr2_3:48835736-48835755 None:intergenic 25.0%
! GTCTTGTATATGTTATCATT+GGG + chr2_3:48835827-48835846 None:intergenic 25.0%
! TGTCTTGTATATGTTATCAT+TGG + chr2_3:48835828-48835847 None:intergenic 25.0%
! GATGAAAAGAAGTAAACTTT+GGG + chr2_3:48835880-48835899 None:intergenic 25.0%
! AGATGAAAAGAAGTAAACTT+TGG + chr2_3:48835881-48835900 None:intergenic 25.0%
!! AAAGTTTACTTCTTTTCATC+TGG - chr2_3:48835880-48835899 Msa0296000:intron 25.0%
!! AAGTTTACTTCTTTTCATCT+GGG - chr2_3:48835881-48835900 Msa0296000:intron 25.0%
! TATTTAAAAATGGGTGTATG+TGG - chr2_3:48835957-48835976 Msa0296000:intron 25.0%
! ATTTAAAAATGGGTGTATGT+GGG - chr2_3:48835958-48835977 Msa0296000:intron 25.0%
! AAAGGATTTGGATTCAATAA+TGG - chr2_3:48836031-48836050 Msa0296000:intron 25.0%
!! ATTTGTAAAGCATTTACAAG+AGG + chr2_3:48836451-48836470 None:intergenic 25.0%
! AAAAGGTAAACCTATTTGAT+TGG + chr2_3:48836703-48836722 None:intergenic 25.0%
! ATTCTACAAGGAGTTTAAAA+AGG + chr2_3:48836720-48836739 None:intergenic 25.0%
! TAGATAGGTTATGTGAAATT+TGG + chr2_3:48836793-48836812 None:intergenic 25.0%
! TAGAAGACATTATCAACTAA+GGG + chr2_3:48837034-48837053 None:intergenic 25.0%
!!! TTTACATGTATAAGTTTTGG+AGG + chr2_3:48837071-48837090 None:intergenic 25.0%
!!! CTTTTACACTTTTTAAACGA+TGG - chr2_3:48837263-48837282 Msa0296000:intron 25.0%
!!! TTTTTTAAACGAAACACTGA+TGG + chr2_3:48837588-48837607 None:intergenic 25.0%
!! AATGTACTAATAACTTGTGA+AGG + chr2_3:48837766-48837785 None:intergenic 25.0%
!!! TTTTTGGCAATATGTAATTG+TGG - chr2_3:48838003-48838022 Msa0296000:intron 25.0%
! CTTCAATATTATGTTTGCAT+AGG + chr2_3:48838113-48838132 None:intergenic 25.0%
! ATGCAAACATAATATTGAAG+AGG - chr2_3:48838113-48838132 Msa0296000:intron 25.0%
! CTTCAATATTATGTTTGCAT+AGG + chr2_3:48838113-48838132 None:intergenic 25.0%
! ATGCAAACATAATATTGAAG+AGG - chr2_3:48838113-48838132 Msa0296000:intron 25.0%
! TGAACAAATACTTGAAAACA+AGG - chr2_3:48838252-48838271 Msa0296000:intron 25.0%
!! TTCTTCATAACTGATTTCAT+AGG + chr2_3:48838474-48838493 None:intergenic 25.0%
! AATGGTTAGGTTAATTATAC+AGG + chr2_3:48838576-48838595 None:intergenic 25.0%
! GTATAATTAACCTAACCATT+TGG - chr2_3:48838576-48838595 Msa0296000:CDS 25.0%
! GTATTCAGCAAATATATTGT+TGG - chr2_3:48838627-48838646 Msa0296000:CDS 25.0%
! TTGGTAAACCAAGATAATAA+AGG + chr2_3:48838942-48838961 None:intergenic 25.0%
! GTTACAAAAAACAATACTTG+TGG - chr2_3:48838987-48839006 Msa0296000:five_prime_UTR 25.0%
TGTGTCAAATATCATCTTTG+AGG + chr2_3:48835645-48835664 None:intergenic 30.0%
TGTACTAATGGAGTTAGAAA+AGG + chr2_3:48835724-48835743 None:intergenic 30.0%
ACATGGGGAATATTGTATAT+GGG + chr2_3:48835763-48835782 None:intergenic 30.0%
AAATTGGAGAAAGAAAAGGT+GGG + chr2_3:48835854-48835873 None:intergenic 30.0%
TAAATTGGAGAAAGAAAAGG+TGG + chr2_3:48835855-48835874 None:intergenic 30.0%
GTCTAAATTGGAGAAAGAAA+AGG + chr2_3:48835858-48835877 None:intergenic 30.0%
AGTAAACTTTGGGTCTAAAT+TGG + chr2_3:48835870-48835889 None:intergenic 30.0%
TTGATGCTATTGTTTCCATT+TGG - chr2_3:48836161-48836180 Msa0296000:intron 30.0%
TGATGCTATTGTTTCCATTT+GGG - chr2_3:48836162-48836181 Msa0296000:intron 30.0%
CACACACCTTGTATTTATAA+TGG + chr2_3:48836264-48836283 None:intergenic 30.0%
GTAAATGCTTTACAAATGCA+AGG - chr2_3:48836454-48836473 Msa0296000:intron 30.0%
GTTGCTACCTCTTAAAATTT+AGG + chr2_3:48836582-48836601 None:intergenic 30.0%
CAATTATGAGCCAATCAAAT+AGG - chr2_3:48836690-48836709 Msa0296000:intron 30.0%
ATTAGAAGAATGTTGCAATC+AGG + chr2_3:48836753-48836772 None:intergenic 30.0%
TGTTTCTTGCTTCTTTAGAT+AGG + chr2_3:48836808-48836827 None:intergenic 30.0%
ACTGAATAAAGATTAAGCGA+AGG - chr2_3:48836848-48836867 Msa0296000:CDS 30.0%
CTACATTATTAGGCTATTTG+TGG - chr2_3:48836918-48836937 Msa0296000:intron 30.0%
CTAGAAGACATTATCAACTA+AGG + chr2_3:48837035-48837054 None:intergenic 30.0%
!!! ACGATGGATTATTTTTCTTG+TGG - chr2_3:48837279-48837298 Msa0296000:intron 30.0%
TGAAAATCATTTCCACAGTT+TGG + chr2_3:48837354-48837373 None:intergenic 30.0%
! AAACTGTGGAAATGATTTTC+AGG - chr2_3:48837353-48837372 Msa0296000:CDS 30.0%
CTGCAATTCTTCATTTAAAG+TGG + chr2_3:48837494-48837513 None:intergenic 30.0%
!! GATTGGTTTGAAAAATTCAC+AGG + chr2_3:48837692-48837711 None:intergenic 30.0%
TCAAACCAATCTACAACATT+TGG - chr2_3:48837701-48837720 Msa0296000:intron 30.0%
!! AATTTCTCGCGTTCTAAAAA+TGG - chr2_3:48837737-48837756 Msa0296000:intron 30.0%
TTATCCCTTATCTTTGTTGA+TGG - chr2_3:48837826-48837845 Msa0296000:intron 30.0%
!! TCAATCTGCGTCTTTTATTT+CGG + chr2_3:48837915-48837934 None:intergenic 30.0%
! TTGCAATTCAGTGAAAGTAT+TGG + chr2_3:48838038-48838057 None:intergenic 30.0%
TACTTGGAAATTAAGCCATT+AGG + chr2_3:48838427-48838446 None:intergenic 30.0%
CATAGGAAAATAGTTTCACT+TGG + chr2_3:48838457-48838476 None:intergenic 30.0%
GAAATCAGTTATGAAGAATC+TGG - chr2_3:48838476-48838495 Msa0296000:CDS 30.0%
AAATTCTCGTTCAGTTAAAC+AGG - chr2_3:48838745-48838764 Msa0296000:CDS 30.0%
! CAGATTAATGTATTCTAGAG+AGG - chr2_3:48838838-48838857 Msa0296000:five_prime_UTR 30.0%
! TAATGTATTCTAGAGAGGAT+AGG - chr2_3:48838843-48838862 Msa0296000:five_prime_UTR 30.0%
ATACCACACCTTTATTATCT+TGG - chr2_3:48838931-48838950 Msa0296000:five_prime_UTR 30.0%
AAACCAAGATAATAAAGGTG+TGG + chr2_3:48838937-48838956 None:intergenic 30.0%
! AGAAGATTGAAGATACGTTT+TGG + chr2_3:48838961-48838980 None:intergenic 30.0%
TTGGAAAGAACAACATGTGA+AGG - chr2_3:48835579-48835598 Msa0296000:three_prime_UTR 35.0%
GACATGGGGAATATTGTATA+TGG + chr2_3:48835764-48835783 None:intergenic 35.0%
AATTGTACAAGAGTGGACAT+GGG + chr2_3:48835779-48835798 None:intergenic 35.0%
GATAGAGAATTGTACAAGAG+TGG + chr2_3:48835786-48835805 None:intergenic 35.0%
! TTTACTTCTTTTCATCTGGG+TGG - chr2_3:48835884-48835903 Msa0296000:intron 35.0%
GAGGCGCAGTATTTAAAAAT+GGG - chr2_3:48835948-48835967 Msa0296000:intron 35.0%
GGATTTGGATTCAATAATGG+TGG - chr2_3:48836034-48836053 Msa0296000:intron 35.0%
TTTGGATTCAATAATGGTGG+AGG - chr2_3:48836037-48836056 Msa0296000:intron 35.0%
TTGACTTATCTCTCAATGAC+TGG - chr2_3:48836121-48836140 Msa0296000:intron 35.0%
! TAATTAGTAAGCACTAGCCT+AGG + chr2_3:48836216-48836235 None:intergenic 35.0%
!! ATTTTAATGGGGCAACATCA+GGG + chr2_3:48836349-48836368 None:intergenic 35.0%
!!! TATTTTAATGGGGCAACATC+AGG + chr2_3:48836350-48836369 None:intergenic 35.0%
ATTTACAAGAGGCTAATTCC+GGG + chr2_3:48836440-48836459 None:intergenic 35.0%
CATTTACAAGAGGCTAATTC+CGG + chr2_3:48836441-48836460 None:intergenic 35.0%
TCTATGATAGGGTCATATGA+TGG - chr2_3:48836486-48836505 Msa0296000:intron 35.0%
!! CCTTACAAGTCAGTTTTGTA+CGG - chr2_3:48836541-48836560 Msa0296000:intron 35.0%
!! CTTACAAGTCAGTTTTGTAC+GGG - chr2_3:48836542-48836561 Msa0296000:intron 35.0%
! GGCTCAACCTAAATTTTAAG+AGG - chr2_3:48836572-48836591 Msa0296000:intron 35.0%
TGTTGCAAGATGATAGCAAA+AGG + chr2_3:48836635-48836654 None:intergenic 35.0%
AGAATGTTGCAATCAGGATA+GGG + chr2_3:48836747-48836766 None:intergenic 35.0%
AAGAATGTTGCAATCAGGAT+AGG + chr2_3:48836748-48836767 None:intergenic 35.0%
!! ATATAATGAAAGGCACTGTG+AGG - chr2_3:48837199-48837218 Msa0296000:intron 35.0%
AAAAAGGTTGACCGCAAAAT+GGG + chr2_3:48837522-48837541 None:intergenic 35.0%
! CACTGATGGATGATAAAACA+CGG + chr2_3:48837574-48837593 None:intergenic 35.0%
! TGATGGTAATGAGTTTGTCA+AGG - chr2_3:48837664-48837683 Msa0296000:intron 35.0%
CTTGTCCAAATGTTGTAGAT+TGG + chr2_3:48837709-48837728 None:intergenic 35.0%
AGCACCATCAACAAAGATAA+GGG + chr2_3:48837833-48837852 None:intergenic 35.0%
TGGCAATATGTAATTGTGGA+TGG - chr2_3:48838007-48838026 Msa0296000:intron 35.0%
CGAAACAGACATGAAATCTT+AGG - chr2_3:48838294-48838313 Msa0296000:intron 35.0%
! GTTGCTATTAAGAAAAGCAC+AGG + chr2_3:48838335-48838354 None:intergenic 35.0%
CTTATATAGCTCACTCCTAA+TGG - chr2_3:48838409-48838428 Msa0296000:CDS 35.0%
TTCACTTGGTTCACATTACT+TGG + chr2_3:48838443-48838462 None:intergenic 35.0%
! AGTTATGAAGAATCTGGAAC+TGG - chr2_3:48838482-48838501 Msa0296000:CDS 35.0%
! AACATTGACTAGGATCCAAA+TGG + chr2_3:48838594-48838613 None:intergenic 35.0%
ATTGTACAAGAGTGGACATG+GGG + chr2_3:48835778-48835797 None:intergenic 40.0%
GAATTGTACAAGAGTGGACA+TGG + chr2_3:48835780-48835799 None:intergenic 40.0%
!! TTTCAAGTTGAGAGCATGCA+GGG - chr2_3:48835907-48835926 Msa0296000:intron 40.0%
! GGAGGCGCAGTATTTAAAAA+TGG - chr2_3:48835947-48835966 Msa0296000:intron 40.0%
!! GATTTTGGGAAATCTTGCTC+TGG - chr2_3:48836090-48836109 Msa0296000:intron 40.0%
! AGGCAAGGAATGTCTTTTTC+AGG + chr2_3:48836524-48836543 None:intergenic 40.0%
!! CAAAACTGACTTGTAAGGCA+AGG + chr2_3:48836539-48836558 None:intergenic 40.0%
!! CCGTACAAAACTGACTTGTA+AGG + chr2_3:48836544-48836563 None:intergenic 40.0%
!! CAGTTTTGTACGGGTGAATA+AGG - chr2_3:48836551-48836570 Msa0296000:intron 40.0%
TGAACGTTAACACAGCAGTA+AGG + chr2_3:48836611-48836630 None:intergenic 40.0%
AATGTTGCAATCAGGATAGG+GGG + chr2_3:48836745-48836764 None:intergenic 40.0%
GAATGTTGCAATCAGGATAG+GGG + chr2_3:48836746-48836765 None:intergenic 40.0%
TATTCCCACACAGATCTTTG+CGG - chr2_3:48837125-48837144 Msa0296000:intron 40.0%
!! TTAGTACCGATAGTAGGTCT+TGG - chr2_3:48837150-48837169 Msa0296000:intron 40.0%
! AAAGCACCAAGACCTACTAT+CGG + chr2_3:48837159-48837178 None:intergenic 40.0%
GCAGGTCGAGATATAATGAA+AGG - chr2_3:48837189-48837208 Msa0296000:CDS 40.0%
TATATGCAGTGTCCAAACTG+TGG - chr2_3:48837339-48837358 Msa0296000:intron 40.0%
GAAAAAGGTTGACCGCAAAA+TGG + chr2_3:48837523-48837542 None:intergenic 40.0%
! TTTTGCGGTCAACCTTTTTC+TGG - chr2_3:48837523-48837542 Msa0296000:intron 40.0%
!! AACCTTTTTCTGGTAAGCTG+TGG - chr2_3:48837533-48837552 Msa0296000:intron 40.0%
AACCACAGCTTACCAGAAAA+AGG + chr2_3:48837538-48837557 None:intergenic 40.0%
CAGCACCATCAACAAAGATA+AGG + chr2_3:48837834-48837853 None:intergenic 40.0%
GTGTTTCCGTGTTTCGTTTA+TGG - chr2_3:48837853-48837872 Msa0296000:intron 40.0%
TGTCTGCCATAAACGAAACA+CGG + chr2_3:48837862-48837881 None:intergenic 40.0%
TGTTTCGTTTATGGCAGACA+AGG - chr2_3:48837862-48837881 Msa0296000:intron 40.0%
TTTATGGCAGACAAGGATTC+TGG - chr2_3:48837869-48837888 Msa0296000:intron 40.0%
! AGCTATATAAGCGAGAGCAT+TGG + chr2_3:48838400-48838419 None:intergenic 40.0%
! AAGAATCTGGAACTGGAATG+TGG - chr2_3:48838489-48838508 Msa0296000:CDS 40.0%
TGACTAGGATCCAAATGGTT+AGG + chr2_3:48838589-48838608 None:intergenic 40.0%
! GGACATACTCAACATTGACT+AGG + chr2_3:48838604-48838623 None:intergenic 40.0%
TGGCAAGTGTTCGTTGGATT+TGG - chr2_3:48835560-48835579 Msa0296000:three_prime_UTR 45.0%
GGTTTAGACATGTCGTCGAA+TGG + chr2_3:48835703-48835722 None:intergenic 45.0%
!! GTTTCAAGTTGAGAGCATGC+AGG - chr2_3:48835906-48835925 Msa0296000:intron 45.0%
!!! AGGGAGAGGTGCTCTTTTTT+GGG - chr2_3:48835926-48835945 Msa0296000:intron 45.0%
TGGGTGTATGTGGGAAGAAA+AGG - chr2_3:48835967-48835986 Msa0296000:intron 45.0%
GGGTGTATGTGGGAAGAAAA+GGG - chr2_3:48835968-48835987 Msa0296000:intron 45.0%
GGTGTATGTGGGAAGAAAAG+GGG - chr2_3:48835969-48835988 Msa0296000:intron 45.0%
! GGATTCAATAATGGTGGAGG+TGG - chr2_3:48836040-48836059 Msa0296000:intron 45.0%
! TTCAATAATGGTGGAGGTGG+TGG - chr2_3:48836043-48836062 Msa0296000:intron 45.0%
! TGGTAGCACTGCTAGGATTT+TGG - chr2_3:48836075-48836094 Msa0296000:intron 45.0%
! GGTAGCACTGCTAGGATTTT+GGG - chr2_3:48836076-48836095 Msa0296000:intron 45.0%
CTCTCAATGACTGGACAACT+TGG - chr2_3:48836130-48836149 Msa0296000:intron 45.0%
!! AGAGAGAGAGAGTACCCAAA+TGG + chr2_3:48836179-48836198 None:intergenic 45.0%
TCTCTCTCTCTTGGTTTCCT+AGG - chr2_3:48836196-48836215 Msa0296000:intron 45.0%
AGGTAAGACGCGTCTATGAT+AGG - chr2_3:48836474-48836493 Msa0296000:intron 45.0%
GGTAAGACGCGTCTATGATA+GGG - chr2_3:48836475-48836494 Msa0296000:intron 45.0%
TAACACAGCAGTAAGGTTGC+TGG + chr2_3:48836604-48836623 None:intergenic 45.0%
AACACCGCAAAGATCTGTGT+GGG + chr2_3:48837132-48837151 None:intergenic 45.0%
TAACACCGCAAAGATCTGTG+TGG + chr2_3:48837133-48837152 None:intergenic 45.0%
! TTGCAGTTGTGCCCATTTTG+CGG - chr2_3:48837508-48837527 Msa0296000:intron 45.0%
! ATCTGGAACTGGAATGTGGT+TGG - chr2_3:48838493-48838512 Msa0296000:CDS 45.0%
!!! CAGGGAGAGGTGCTCTTTTT+TGG - chr2_3:48835925-48835944 Msa0296000:intron 50.0%
!!! GAGAGGTGCTCTTTTTTGGG+AGG - chr2_3:48835929-48835948 Msa0296000:intron 50.0%
! GGAAGAAAAGGGGTGCAAGA+GGG - chr2_3:48835979-48835998 Msa0296000:intron 50.0%
GTGCAAGAGGGAAAAGAGAG+TGG - chr2_3:48835991-48836010 Msa0296000:intron 50.0%
! GAGATGATGGTAGCACTGCT+AGG - chr2_3:48836068-48836087 Msa0296000:intron 50.0%
GAAATCTTGCTCTGGCTGCT+GGG - chr2_3:48836098-48836117 Msa0296000:intron 50.0%
CAATGACTGGACAACTTGGC+TGG - chr2_3:48836134-48836153 Msa0296000:intron 50.0%
CTCTCTCTCTCTCTCTCTCT+TGG - chr2_3:48836187-48836206 Msa0296000:intron 50.0%
GGATAGGGGGAGATTCTACA+AGG + chr2_3:48836732-48836751 None:intergenic 50.0%
!! GCGGTGTTAGTACCGATAGT+AGG - chr2_3:48837144-48837163 Msa0296000:intron 50.0%
!! TAGGTCTTGGTGCTTTCCTC+TGG - chr2_3:48837163-48837182 Msa0296000:intron 50.0%
!! TCTTGGTGCTTTCCTCTGGT+GGG - chr2_3:48837167-48837186 Msa0296000:intron 50.0%
TCGTTCAGTTAAACAGGCCG+TGG - chr2_3:48838751-48838770 Msa0296000:CDS 50.0%
ACTCGTTGCGTCTTAAGCAC+CGG + chr2_3:48838786-48838805 None:intergenic 50.0%
CCAACGAACACTTGCCACGT+TGG + chr2_3:48835557-48835576 None:intergenic 55.0%
CCAACGTGGCAAGTGTTCGT+TGG - chr2_3:48835554-48835573 Msa0296000:three_prime_UTR 55.0%
! AGTTGAGAGCATGCAGGGAG+AGG - chr2_3:48835912-48835931 Msa0296000:intron 55.0%
! GGGAAGAAAAGGGGTGCAAG+AGG - chr2_3:48835978-48835997 Msa0296000:intron 55.0%
!! GGAGGTGGTGGAAGAGATGA+TGG - chr2_3:48836055-48836074 Msa0296000:intron 55.0%
GGAAATCTTGCTCTGGCTGC+TGG - chr2_3:48836097-48836116 Msa0296000:intron 55.0%
!! GTCTTGGTGCTTTCCTCTGG+TGG - chr2_3:48837166-48837185 Msa0296000:intron 55.0%
! AGCACCGGAAATGCAAGCCA+CGG + chr2_3:48838771-48838790 None:intergenic 55.0%
TATCTCGACCTGCCCACCAG+AGG + chr2_3:48837182-48837201 None:intergenic 60.0%
! CAGGCCGTGGCTTGCATTTC+CGG - chr2_3:48838764-48838783 Msa0296000:exon 60.0%
! GGTGCTTTCCTCTGGTGGGC+AGG - chr2_3:48837171-48837190 Msa0296000:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 48835547 48839012 48835547 ID=Msa0296000;Name=Msa0296000
chr2_3 mRNA 48835547 48839012 48835547 ID=Msa0296000-mRNA-1;Parent=Msa0296000;Name=Msa0296000-mRNA-1;_AED=0.10;_eAED=0.10;_QI=232|1|1|1|0.83|0.71|7|311|241
chr2_3 exon 48835547 48835831 48835547 ID=Msa0296000-mRNA-1:exon:15389;Parent=Msa0296000-mRNA-1
chr2_3 exon 48836599 48836680 48836599 ID=Msa0296000-mRNA-1:exon:15388;Parent=Msa0296000-mRNA-1
chr2_3 exon 48836801 48836896 48836801 ID=Msa0296000-mRNA-1:exon:15387;Parent=Msa0296000-mRNA-1
chr2_3 exon 48837015 48837070 48837015 ID=Msa0296000-mRNA-1:exon:15386;Parent=Msa0296000-mRNA-1
chr2_3 exon 48837177 48837211 48837177 ID=Msa0296000-mRNA-1:exon:15385;Parent=Msa0296000-mRNA-1
chr2_3 exon 48837344 48837421 48837344 ID=Msa0296000-mRNA-1:exon:15384;Parent=Msa0296000-mRNA-1
chr2_3 exon 48838376 48839012 48838376 ID=Msa0296000-mRNA-1:exon:15383;Parent=Msa0296000-mRNA-1
chr2_3 five_prime_UTR 48838781 48839012 48838781 ID=Msa0296000-mRNA-1:five_prime_utr;Parent=Msa0296000-mRNA-1
chr2_3 CDS 48838376 48838780 48838376 ID=Msa0296000-mRNA-1:cds;Parent=Msa0296000-mRNA-1
chr2_3 CDS 48837344 48837421 48837344 ID=Msa0296000-mRNA-1:cds;Parent=Msa0296000-mRNA-1
chr2_3 CDS 48837177 48837211 48837177 ID=Msa0296000-mRNA-1:cds;Parent=Msa0296000-mRNA-1
chr2_3 CDS 48837015 48837070 48837015 ID=Msa0296000-mRNA-1:cds;Parent=Msa0296000-mRNA-1
chr2_3 CDS 48836801 48836896 48836801 ID=Msa0296000-mRNA-1:cds;Parent=Msa0296000-mRNA-1
chr2_3 CDS 48836625 48836680 48836625 ID=Msa0296000-mRNA-1:cds;Parent=Msa0296000-mRNA-1
chr2_3 three_prime_UTR 48836599 48836624 48836599 ID=Msa0296000-mRNA-1:three_prime_utr;Parent=Msa0296000-mRNA-1
chr2_3 three_prime_UTR 48835547 48835831 48835547 ID=Msa0296000-mRNA-1:three_prime_utr;Parent=Msa0296000-mRNA-1
Gene Sequence

>Msa0296000

ATGTCCACTCTTGTACAATTCTCTATCAAATTTTCACACTTGAAACCCAATGATAACATATACAAGACACAACCCACCTTTTCTTTCTCCAATTTAGACCCAAAGTTTACTTCTTTTCATCTGGGTGGTTTCAAGTTGAGAGCATGCAGGGAGAGGTGCTCTTTTTTGGGAGGCGCAGTATTTAAAAATGGGTGTATGTGGGAAGAAAAGGGGTGCAAGAGGGAAAAGAGAGTGGTTTTAGTAAAGAATAATAAAGGATTTGGATTCAATAATGGTGGAGGTGGTGGAAGAGATGATGGTAGCACTGCTAGGATTTTGGGAAATCTTGCTCTGGCTGCTGGGTTGACTTATCTCTCAATGACTGGACAACTTGGCTGGATAATTGATGCTATTGTTTCCATTTGGATCTTTGCGGTGTTAGTACCGATAGTAGGTCTTGGTGCTTTCCTCTGGTGGGCAGGTCGAGATATAATGAAAGGCACTTGTCCAAACTGTGGAAATGATTTTCAGGTTTTCAAATCCACTTTAAATGAAGAATTGCAGTTGTGCCCATTTTGCGGTCAACCTTTTTCTGTTGATGGTAATGAGTTTGTCAAGGAACCTGTGAATTTTTCAAACCAATCTACAACATTTGGACAAGCATTCGACAATTTCTCGCGTTCTAAAAATGACAAGGATTCTGGTAGAGCAATTGATGTTGAAGCCGAAATAAAAGACGCAGATTGA

Protein sequence

>Msa0296000

MSTLVQFSIKFSHLKPNDNIYKTQPTFSFSNLDPKFTSFHLGGFKLRACRERCSFLGGAVFKNGCMWEEKGCKREKRVVLVKNNKGFGFNNGGGGGRDDGSTARILGNLALAAGLTYLSMTGQLGWIIDAIVSIWIFAVLVPIVGLGAFLWWAGRDIMKGTCPNCGNDFQVFKSTLNEELQLCPFCGQPFSVDGNEFVKEPVNFSNQSTTFGQAFDNFSRSKNDKDSGRAIDVEAEIKDAD*