AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0122210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122210 MtrunA17_Chr1g0181961 97.059 170 4 1 1 169 1 170 2.71e-121 339
Msa0122210 MtrunA17_Chr0c01g0489161 95.035 141 7 0 1 141 1 141 2.28e-88 255
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122210 AT5G02710.3 54.438 169 70 3 9 170 7 175 4.85e-63 192
Msa0122210 AT5G02710.2 54.438 169 70 3 9 170 7 175 4.85e-63 192
Msa0122210 AT5G02710.1 54.438 169 70 3 9 170 7 175 4.85e-63 192

Find 94 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTCAATTAAGGCAATTTA+TGG 0.179274 1_3:-48564131 Msa0122210:CDS
CAGCTCTACAATAGCTTAAT+AGG 0.218970 1_3:-48565353 Msa0122210:CDS
ATCTAATTTGGAATGGAAAT+TGG 0.220115 1_3:+48563278 None:intergenic
CACAGCAACGATATCTAATT+TGG 0.234956 1_3:+48563266 None:intergenic
TGTGTTCTTCTTTGCCTTGA+TGG 0.276200 1_3:+48565824 None:intergenic
TGGTATCTGGAAGAATTTAA+AGG 0.293421 1_3:+48563441 None:intergenic
ATTATGAAGTTCCTTTGAAT+TGG 0.301100 1_3:+48564106 None:intergenic
TTTCTGCAGGGACTCAATTA+AGG 0.322496 1_3:-48564141 Msa0122210:CDS
TGGGCACTGACCAGAGTAAA+TGG 0.329466 1_3:+48565283 None:intergenic
TTGCTGTGGGGTGGCGTGCC+AGG 0.331993 1_3:-48563251 Msa0122210:three_prime_UTR
GCAATGCTTAGAAGAGAATA+TGG 0.342275 1_3:-48565884 Msa0122210:five_prime_UTR
GTTTCCACCGTCTCAAAATC+AGG 0.352865 1_3:+48565850 None:intergenic
GCTTGTTGTAAGCTTCAAAA+AGG 0.360348 1_3:-48565564 Msa0122210:CDS
CTTGGAAATGTAATATTAGA+TGG 0.362721 1_3:-48563134 Msa0122210:three_prime_UTR
TAAACAGAAGAATTTCAATA+AGG 0.371896 1_3:-48565110 Msa0122210:CDS
TTCTTCTTTGCCTTGATGGC+AGG 0.372316 1_3:+48565828 None:intergenic
GAGGTGTTTGAATCTTTGTT+TGG 0.380094 1_3:-48565136 Msa0122210:CDS
GTTGAACTCTTTATTGATCA+AGG 0.393841 1_3:-48564044 Msa0122210:intron
TAACTTTCTGCAGAACTTGT+TGG 0.396504 1_3:-48563482 Msa0122210:intron
ACCATTCATTTAGTTTGTAC+AGG 0.397277 1_3:+48563023 None:intergenic
CCCACATTCAGTCAAGATAT+TGG 0.406505 1_3:+48563421 None:intergenic
TCAGTCAAGATATTGGTATC+TGG 0.408739 1_3:+48563428 None:intergenic
TGAAATTAGCCTATTCAAAT+CGG 0.409925 1_3:+48563083 None:intergenic
CATAAGGTAGTAAAATCTAA+TGG 0.411369 1_3:+48565761 None:intergenic
CTAATTTCATTATTCTACTC+AGG 0.416442 1_3:-48563069 Msa0122210:three_prime_UTR
AGGGTCTAAACACGAATTGC+CGG 0.429065 1_3:-48562882 None:intergenic
AAAGGAATGACTTCTATTAG+TGG 0.432330 1_3:+48563459 None:intergenic
AAGTATGAACCGATTTGAAT+AGG 0.441988 1_3:-48563092 Msa0122210:three_prime_UTR
GGTGCTGCCGCCATTATCAT+TGG 0.449696 1_3:-48565715 Msa0122210:CDS
GAACATGTGACCAATGATAA+TGG 0.463503 1_3:+48565705 None:intergenic
ACCAATATCTTGACTGAATG+TGG 0.466280 1_3:-48563422 Msa0122210:three_prime_UTR
AATTTAGCCATCACTGCAGT+AGG 0.474691 1_3:+48563164 None:intergenic
TGGCATTGCGTGCAAGGTTG+TGG 0.476021 1_3:-48565588 Msa0122210:CDS
TCTTCAGGAGATGGATAAGA+AGG 0.485774 1_3:+48565540 None:intergenic
TTGAAGCACAACCACGTTGT+TGG 0.491762 1_3:-48563317 Msa0122210:three_prime_UTR
AAATTAGATATCGTTGCTGT+GGG 0.492457 1_3:-48563264 Msa0122210:three_prime_UTR
TTCATTATTCTACTCAGGGT+TGG 0.493171 1_3:-48563064 Msa0122210:three_prime_UTR
AATTTATGGTTCCAATTCAA+AGG 0.494826 1_3:-48564117 Msa0122210:CDS
GCCATCACTGCAGTAGGGTG+AGG 0.495895 1_3:+48563170 None:intergenic
TAATGTATACACCATCCATC+TGG 0.496715 1_3:+48565329 None:intergenic
GGGTTATGTGTGGTACTTGA+TGG 0.507421 1_3:-48563394 Msa0122210:three_prime_UTR
TGGTGGTGAGAGATATCATA+AGG 0.510409 1_3:+48565745 None:intergenic
TCCTCACCCTACTGCAGTGA+TGG 0.513134 1_3:-48563171 Msa0122210:three_prime_UTR
TTGTCGTGGCATTGCGTGCA+AGG 0.513920 1_3:-48565594 Msa0122210:CDS
TACCGATCCTTCAGATGTTG+AGG 0.516912 1_3:-48565511 Msa0122210:intron
TTTCCCTTGTAGTTTCTGCA+GGG 0.517976 1_3:-48564153 Msa0122210:intron
GGCAATTCGTGTTTAGACCC+TGG 0.521007 1_3:+48562884 None:intergenic
AGGTTTCAGCGGCGAGAAGA+AGG 0.522187 1_3:-48565619 Msa0122210:CDS
AGAAAATGTTCCATTTACTC+TGG 0.525786 1_3:-48565293 Msa0122210:intron
CAACGATATCTAATTTGGAA+TGG 0.528093 1_3:+48563271 None:intergenic
TTCTCTTCTAAGCATTGCGA+AGG 0.529969 1_3:+48565889 None:intergenic
CAAATTAGATATCGTTGCTG+TGG 0.530710 1_3:-48563265 Msa0122210:three_prime_UTR
AAACAAAGGCAAAACAATGC+AGG 0.531021 1_3:-48565639 Msa0122210:CDS
CATAATTACAAAGAAGCTGC+TGG 0.532771 1_3:-48563207 Msa0122210:three_prime_UTR
ATAACAGTAGAGTGCTTGAA+AGG 0.534190 1_3:+48563339 None:intergenic
TAATTTCATTATTCTACTCA+GGG 0.539412 1_3:-48563068 Msa0122210:three_prime_UTR
ACAGAAGAATTTCAATAAGG+AGG 0.546703 1_3:-48565107 Msa0122210:CDS
ATTTCAATAAGGAGGCATGC+AGG 0.546848 1_3:-48565099 Msa0122210:intron
AAAATCTAATGGAGTGTGGA+AGG 0.547037 1_3:+48565772 None:intergenic
CGGCAGCACCAGAGTGGTGG+TGG 0.548071 1_3:+48565728 None:intergenic
TAATTTGGAATGGAAATTGG+TGG 0.551121 1_3:+48563281 None:intergenic
ACGGTGGAAACCTGCCATCA+AGG 0.551278 1_3:-48565838 Msa0122210:five_prime_UTR
ATCTCTCACCACCACCACTC+TGG 0.552535 1_3:-48565736 Msa0122210:CDS
CCATTCATTTAGTTTGTACA+GGG 0.559470 1_3:+48563024 None:intergenic
AAATGGACCTCAACATCTGA+AGG 0.562258 1_3:+48565504 None:intergenic
CCCTGTACAAACTAAATGAA+TGG 0.563534 1_3:-48563024 Msa0122210:three_prime_UTR
AAGCACAACCACGTTGTTGG+TGG 0.564220 1_3:-48563314 Msa0122210:three_prime_UTR
AACAAAGATTCAAACACCTC+AGG 0.567275 1_3:+48565139 None:intergenic
GACCTCAACATCTGAAGGAT+CGG 0.570801 1_3:+48565509 None:intergenic
TAGTAAAATCTAATGGAGTG+TGG 0.575950 1_3:+48565768 None:intergenic
AATAGCTTAATAGGACCAGA+TGG 0.583134 1_3:-48565344 Msa0122210:CDS
CCAATATCTTGACTGAATGT+GGG 0.589387 1_3:-48563421 Msa0122210:three_prime_UTR
CAAAACAATGCAGGTTTCAG+CGG 0.589943 1_3:-48565630 Msa0122210:CDS
CTTTGTAATTATGCCGCCAG+AGG 0.592326 1_3:+48563217 None:intergenic
TAGATATCGTTGCTGTGGGG+TGG 0.602974 1_3:-48563260 Msa0122210:three_prime_UTR
TATGTGTGGTACTTGATGGA+AGG 0.606551 1_3:-48563390 Msa0122210:three_prime_UTR
ATCATTGGTCACATGTTCAG+CGG 0.607004 1_3:-48565700 Msa0122210:CDS
TGGCGGCAGCACCAGAGTGG+TGG 0.610038 1_3:+48565725 None:intergenic
GCTTAATAGGACCAGATGGA+TGG 0.610306 1_3:-48565340 Msa0122210:CDS
TCTTGACTGAATGTGGGACG+TGG 0.610465 1_3:-48563415 Msa0122210:three_prime_UTR
GCTTCAACATATGCATTGTG+TGG 0.613565 1_3:+48563361 None:intergenic
ATTTAGCCATCACTGCAGTA+GGG 0.618720 1_3:+48563165 None:intergenic
GCGTCGTCCACATACAACTA+CGG 0.631589 1_3:-48565676 Msa0122210:CDS
CAAACACCTCAGGCTCCGCA+CGG 0.675793 1_3:+48565149 None:intergenic
GCGAGAAGAAGGAATTGTCG+TGG 0.678840 1_3:-48565608 Msa0122210:CDS
TAATGGCGGCAGCACCAGAG+TGG 0.694878 1_3:+48565722 None:intergenic
TCAAAACTGACAGAAAACAA+AGG 0.696654 1_3:-48565653 Msa0122210:CDS
ACTCTTCATTAGAATACACG+AGG 0.700616 1_3:+48562998 None:intergenic
TGTGGGACGTGGGTTATGTG+TGG 0.705252 1_3:-48563404 Msa0122210:three_prime_UTR
CTTGACTGAATGTGGGACGT+GGG 0.713264 1_3:-48563414 Msa0122210:three_prime_UTR
CTCTTCATTAGAATACACGA+GGG 0.731354 1_3:+48562999 None:intergenic
AATTAGATATCGTTGCTGTG+GGG 0.732083 1_3:-48563263 Msa0122210:three_prime_UTR
TAAGAATACCACCAACAACG+TGG 0.774486 1_3:+48563306 None:intergenic
CATGTGACCAATGATAATGG+CGG 0.801428 1_3:+48565708 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAACATAGAAAACAT+AGG + chr1_3:48563310-48563329 None:intergenic 15.0%
!! TAAATGAAAGATAATTACTT+TGG - chr1_3:48563815-48563834 Msa0122210:intron 15.0%
!!! TTTTATGTATTTCATGAAAT+TGG - chr1_3:48563972-48563991 Msa0122210:intron 15.0%
!! TTAACAAATTTCTTAAGAAA+TGG - chr1_3:48564353-48564372 Msa0122210:intron 15.0%
!! AAAAAATAGCTATATTTGAT+AGG - chr1_3:48564898-48564917 Msa0122210:intron 15.0%
!!! CATTAAGTTTTTGTTTTTTT+GGG + chr1_3:48565054-48565073 None:intergenic 15.0%
!!! TCATTAAGTTTTTGTTTTTT+TGG + chr1_3:48565055-48565074 None:intergenic 15.0%
!! TTATTTATGCTTTGATTATG+TGG - chr1_3:48563396-48563415 Msa0122210:three_prime_UTR 20.0%
!! TTGAATGTTATGATTTCTTA+TGG - chr1_3:48563550-48563569 Msa0122210:intron 20.0%
!! TGAATGTTATGATTTCTTAT+GGG - chr1_3:48563551-48563570 Msa0122210:intron 20.0%
!! TAAACAGAAGAATTTCAATA+AGG - chr1_3:48563677-48563696 Msa0122210:intron 20.0%
!!! ATTTCTTTTACTTTCGTTTA+TGG - chr1_3:48563740-48563759 Msa0122210:intron 20.0%
!!! GAGTTTTAAAGAAAAAACAT+AGG + chr1_3:48563868-48563887 None:intergenic 20.0%
!! ATGAAATACATAAAAGTCAA+AGG + chr1_3:48563967-48563986 None:intergenic 20.0%
!!! TTTTTTGTTTACCATAATGT+TGG - chr1_3:48564780-48564799 Msa0122210:intron 20.0%
!! TATTGTTAAAATAAGTGCTA+TGG - chr1_3:48565101-48565120 Msa0122210:CDS 20.0%
!! TAATTTCATTATTCTACTCA+GGG - chr1_3:48565719-48565738 Msa0122210:CDS 20.0%
! CATAAGGTAGTAAAATCTAA+TGG + chr1_3:48563029-48563048 None:intergenic 25.0%
! ACATAGAAAACATAGGAAAA+TGG + chr1_3:48563303-48563322 None:intergenic 25.0%
!! TAGTATTTGTCTTTTTACAC+TGG - chr1_3:48563364-48563383 Msa0122210:three_prime_UTR 25.0%
! ATGAAAGATAATTACTTTGG+TGG - chr1_3:48563818-48563837 Msa0122210:intron 25.0%
!!! TTTCTTTAAAACTCGATATC+TGG - chr1_3:48563874-48563893 Msa0122210:intron 25.0%
! TCATGAAATTGGAACAATTT+CGG - chr1_3:48563983-48564002 Msa0122210:intron 25.0%
!! ATTTGAAGCAGCATTTAAAT+AGG - chr1_3:48564013-48564032 Msa0122210:intron 25.0%
!! TTTGAAGCAGCATTTAAATA+GGG - chr1_3:48564014-48564033 Msa0122210:intron 25.0%
! TCTTTACTTCAATTTGCATT+CGG - chr1_3:48564058-48564077 Msa0122210:exon 25.0%
!!! AATCATTCTTTGTTGTTGTA+AGG + chr1_3:48564441-48564460 None:intergenic 25.0%
! AGGGAAAAAAACAAAGAAAT+TGG + chr1_3:48564621-48564640 None:intergenic 25.0%
! AATTTATGGTTCCAATTCAA+AGG - chr1_3:48564670-48564689 Msa0122210:intron 25.0%
! ATTATGAAGTTCCTTTGAAT+TGG + chr1_3:48564684-48564703 None:intergenic 25.0%
!!! ATAATTTTGACGAGTCAATT+AGG - chr1_3:48564699-48564718 Msa0122210:intron 25.0%
! ATAAATTCCAATAGAAGAAC+AGG + chr1_3:48564951-48564970 None:intergenic 25.0%
!!! AGATTTCCCATATCTTATTT+TGG - chr1_3:48564995-48565014 Msa0122210:intron 25.0%
!!! GATTTCCCATATCTTATTTT+GGG - chr1_3:48564996-48565015 Msa0122210:intron 25.0%
!! AACTATCTAAAGTTCTATCA+AGG + chr1_3:48565151-48565170 None:intergenic 25.0%
! CTTCGAAAAATATTGATACA+TGG - chr1_3:48565279-48565298 Msa0122210:intron 25.0%
!! ATCTAATTTGGAATGGAAAT+TGG + chr1_3:48565512-48565531 None:intergenic 25.0%
! CTTGGAAATGTAATATTAGA+TGG - chr1_3:48565653-48565672 Msa0122210:CDS 25.0%
!! TGAAATTAGCCTATTCAAAT+CGG + chr1_3:48565707-48565726 None:intergenic 25.0%
! CTAATTTCATTATTCTACTC+AGG - chr1_3:48565718-48565737 Msa0122210:CDS 25.0%
!! GATAAATCCTGATTTTGAGA+CGG - chr1_3:48562930-48562949 Msa0122210:three_prime_UTR 30.0%
TAGTAAAATCTAATGGAGTG+TGG + chr1_3:48563022-48563041 None:intergenic 30.0%
TCAAAACTGACAGAAAACAA+AGG - chr1_3:48563134-48563153 Msa0122210:three_prime_UTR 30.0%
GTAAAAATTTCTTCAGGAGA+TGG + chr1_3:48563259-48563278 None:intergenic 30.0%
AGAAAATGTTCCATTTACTC+TGG - chr1_3:48563494-48563513 Msa0122210:intron 30.0%
!! CATTCAAAACTTTAGAGTGA+TGG + chr1_3:48563537-48563556 None:intergenic 30.0%
ACAGAAGAATTTCAATAAGG+AGG - chr1_3:48563680-48563699 Msa0122210:intron 30.0%
ATTTGAAAAGTGAGTGAGAA+AGG + chr1_3:48563718-48563737 None:intergenic 30.0%
ATGTAATACTGATATGCTAG+TGG - chr1_3:48563842-48563861 Msa0122210:intron 30.0%
TATACTAACAAGTGGACAAT+GGG + chr1_3:48563929-48563948 None:intergenic 30.0%
TTATACTAACAAGTGGACAA+TGG + chr1_3:48563930-48563949 None:intergenic 30.0%
! TCCACTTGTTAGTATAATGA+GGG - chr1_3:48563933-48563952 Msa0122210:intron 30.0%
CATGAAATTGGAACAATTTC+GGG - chr1_3:48563984-48564003 Msa0122210:intron 30.0%
GAATGCAAATTGAAGTAAAG+AGG + chr1_3:48564059-48564078 None:intergenic 30.0%
!! TGTGGTTTCTTTTGTTTATG+AGG - chr1_3:48564120-48564139 Msa0122210:CDS 30.0%
!! TTCTTTGTTGTTGTAAGGTA+AGG + chr1_3:48564436-48564455 None:intergenic 30.0%
GACTCAATTAAGGCAATTTA+TGG - chr1_3:48564656-48564675 Msa0122210:intron 30.0%
GTTGAACTCTTTATTGATCA+AGG - chr1_3:48564743-48564762 Msa0122210:intron 30.0%
GAAAACTCTAACCAACATTA+TGG + chr1_3:48564794-48564813 None:intergenic 30.0%
CTTAGCCCAAAATAAGATAT+GGG + chr1_3:48565004-48565023 None:intergenic 30.0%
ACTTAGCCCAAAATAAGATA+TGG + chr1_3:48565005-48565024 None:intergenic 30.0%
AAAGGAATGACTTCTATTAG+TGG + chr1_3:48565331-48565350 None:intergenic 30.0%
TGGTATCTGGAAGAATTTAA+AGG + chr1_3:48565349-48565368 None:intergenic 30.0%
! TAATTTGGAATGGAAATTGG+TGG + chr1_3:48565509-48565528 None:intergenic 30.0%
CAACGATATCTAATTTGGAA+TGG + chr1_3:48565519-48565538 None:intergenic 30.0%
AAATTAGATATCGTTGCTGT+GGG - chr1_3:48565523-48565542 Msa0122210:CDS 30.0%
!! ATGGCTAAATTTTGATCACT+TGG - chr1_3:48565635-48565654 Msa0122210:CDS 30.0%
!! AAGTATGAACCGATTTGAAT+AGG - chr1_3:48565695-48565714 Msa0122210:CDS 30.0%
!! CCATTCATTTAGTTTGTACA+GGG + chr1_3:48565766-48565785 None:intergenic 30.0%
!! ACCATTCATTTAGTTTGTAC+AGG + chr1_3:48565767-48565786 None:intergenic 30.0%
GCAATGCTTAGAAGAGAATA+TGG - chr1_3:48562903-48562922 Msa0122210:three_prime_UTR 35.0%
AAAATCTAATGGAGTGTGGA+AGG + chr1_3:48563018-48563037 None:intergenic 35.0%
GAACATGTGACCAATGATAA+TGG + chr1_3:48563085-48563104 None:intergenic 35.0%
AAACAAAGGCAAAACAATGC+AGG - chr1_3:48563148-48563167 Msa0122210:three_prime_UTR 35.0%
!! GCTTGTTGTAAGCTTCAAAA+AGG - chr1_3:48563223-48563242 Msa0122210:three_prime_UTR 35.0%
GGATCGGTAAAAATTTCTTC+AGG + chr1_3:48563265-48563284 None:intergenic 35.0%
CAGCTCTACAATAGCTTAAT+AGG - chr1_3:48563434-48563453 Msa0122210:three_prime_UTR 35.0%
AATAGCTTAATAGGACCAGA+TGG - chr1_3:48563443-48563462 Msa0122210:three_prime_UTR 35.0%
TAATGTATACACCATCCATC+TGG + chr1_3:48563461-48563480 None:intergenic 35.0%
!! AAAACTTTAGAGTGATGGTG+TGG + chr1_3:48563532-48563551 None:intergenic 35.0%
! TCTTATGGGAATGTTAGCTT+TGG - chr1_3:48563565-48563584 Msa0122210:intron 35.0%
AACAAAGATTCAAACACCTC+AGG + chr1_3:48563651-48563670 None:intergenic 35.0%
! GAGGTGTTTGAATCTTTGTT+TGG - chr1_3:48563651-48563670 Msa0122210:intron 35.0%
! GTCCACTTGTTAGTATAATG+AGG - chr1_3:48563932-48563951 Msa0122210:intron 35.0%
ACCCTCATTATACTAACAAG+TGG + chr1_3:48563937-48563956 None:intergenic 35.0%
TATTGAAGAACCTTACTCTG+TGG - chr1_3:48564102-48564121 Msa0122210:CDS 35.0%
ACAAAAGAAACCACAGAGTA+AGG + chr1_3:48564115-48564134 None:intergenic 35.0%
!! GGTTTCTTTTGTTTATGAGG+AGG - chr1_3:48564123-48564142 Msa0122210:CDS 35.0%
! GCATAGAGTATCTCTATGTT+AGG - chr1_3:48564167-48564186 Msa0122210:intron 35.0%
TTTGCCTCTATATGCTTTGA+AGG - chr1_3:48564244-48564263 Msa0122210:intron 35.0%
CTATCCTTCAAAGCATATAG+AGG + chr1_3:48564251-48564270 None:intergenic 35.0%
!! CTATATGCTTTGAAGGATAG+TGG - chr1_3:48564251-48564270 Msa0122210:intron 35.0%
AGCTTAACAAATCATGCTAG+TGG - chr1_3:48564283-48564302 Msa0122210:intron 35.0%
CAGGTCATAATGAATCCATT+AGG + chr1_3:48564309-48564328 None:intergenic 35.0%
!! CTAATGGATTCATTATGACC+TGG - chr1_3:48564307-48564326 Msa0122210:intron 35.0%
TGTTGTAAGGTAAGGAATCA+TGG + chr1_3:48564428-48564447 None:intergenic 35.0%
! TAATATAAGTGTGCTAGCCT+TGG + chr1_3:48564487-48564506 None:intergenic 35.0%
GGATAAGAAACACACACTTT+GGG + chr1_3:48564600-48564619 None:intergenic 35.0%
TGGATAAGAAACACACACTT+TGG + chr1_3:48564601-48564620 None:intergenic 35.0%
ATCATTGCCTGTTCTTCTAT+TGG - chr1_3:48564941-48564960 Msa0122210:intron 35.0%
!!! TCTTATTTTGGGCTAAGTGA+AGG - chr1_3:48565007-48565026 Msa0122210:intron 35.0%
! AGAGTTCACTTTGAAGAGTA+AGG + chr1_3:48565256-48565275 None:intergenic 35.0%
TAACTTTCTGCAGAACTTGT+TGG - chr1_3:48565305-48565324 Msa0122210:CDS 35.0%
TCAGTCAAGATATTGGTATC+TGG + chr1_3:48565362-48565381 None:intergenic 35.0%
ACCAATATCTTGACTGAATG+TGG - chr1_3:48565365-48565384 Msa0122210:intron 35.0%
CCAATATCTTGACTGAATGT+GGG - chr1_3:48565366-48565385 Msa0122210:intron 35.0%
! ATAACAGTAGAGTGCTTGAA+AGG + chr1_3:48565451-48565470 None:intergenic 35.0%
CACAGCAACGATATCTAATT+TGG + chr1_3:48565524-48565543 None:intergenic 35.0%
CAAATTAGATATCGTTGCTG+TGG - chr1_3:48565522-48565541 Msa0122210:CDS 35.0%
AATTAGATATCGTTGCTGTG+GGG - chr1_3:48565524-48565543 Msa0122210:CDS 35.0%
CATAATTACAAAGAAGCTGC+TGG - chr1_3:48565580-48565599 Msa0122210:CDS 35.0%
TTCATTATTCTACTCAGGGT+TGG - chr1_3:48565723-48565742 Msa0122210:CDS 35.0%
CCCTGTACAAACTAAATGAA+TGG - chr1_3:48565763-48565782 Msa0122210:exon 35.0%
CTCTTCATTAGAATACACGA+GGG + chr1_3:48565791-48565810 None:intergenic 35.0%
ACTCTTCATTAGAATACACG+AGG + chr1_3:48565792-48565811 None:intergenic 35.0%
! TTCTCTTCTAAGCATTGCGA+AGG + chr1_3:48562901-48562920 None:intergenic 40.0%
!!! AAATCCTGATTTTGAGACGG+TGG - chr1_3:48562933-48562952 Msa0122210:three_prime_UTR 40.0%
TGTGTTCTTCTTTGCCTTGA+TGG + chr1_3:48562966-48562985 None:intergenic 40.0%
! AGTGTGGAAGGTTTTTGTAG+AGG + chr1_3:48563006-48563025 None:intergenic 40.0%
! TGGTGGTGAGAGATATCATA+AGG + chr1_3:48563045-48563064 None:intergenic 40.0%
!! CATGTGACCAATGATAATGG+CGG + chr1_3:48563082-48563101 None:intergenic 40.0%
ATCATTGGTCACATGTTCAG+CGG - chr1_3:48563087-48563106 Msa0122210:three_prime_UTR 40.0%
!! GTTTTGACCGTAGTTGTATG+TGG + chr1_3:48563121-48563140 None:intergenic 40.0%
CAAAACAATGCAGGTTTCAG+CGG - chr1_3:48563157-48563176 Msa0122210:three_prime_UTR 40.0%
TCTTCAGGAGATGGATAAGA+AGG + chr1_3:48563250-48563269 None:intergenic 40.0%
AAATGGACCTCAACATCTGA+AGG + chr1_3:48563286-48563305 None:intergenic 40.0%
! ATTTCAATAAGGAGGCATGC+AGG - chr1_3:48563688-48563707 Msa0122210:intron 40.0%
! GTTCTGTCATCAAGCTTTTG+AGG - chr1_3:48564145-48564164 Msa0122210:intron 40.0%
!! TATGCTTTGAAGGATAGTGG+TGG - chr1_3:48564254-48564273 Msa0122210:intron 40.0%
AAATCATGCTAGTGGCCTAA+TGG - chr1_3:48564291-48564310 Msa0122210:intron 40.0%
CATTATGACCTGGCATAGTA+TGG - chr1_3:48564317-48564336 Msa0122210:intron 40.0%
! TTTTCCCTTGTAGTTTCTGC+AGG - chr1_3:48564633-48564652 Msa0122210:intron 40.0%
TTTCCCTTGTAGTTTCTGCA+GGG - chr1_3:48564634-48564653 Msa0122210:intron 40.0%
TTTCTGCAGGGACTCAATTA+AGG - chr1_3:48564646-48564665 Msa0122210:intron 40.0%
CATGTAGATCACACGAGTTT+GGG - chr1_3:48565124-48565143 Msa0122210:CDS 40.0%
AGGTTAAGCACATGGTCAAA+AGG + chr1_3:48565236-48565255 None:intergenic 40.0%
GAAGAGTAAGGTTAAGCACA+TGG + chr1_3:48565244-48565263 None:intergenic 40.0%
CCCACATTCAGTCAAGATAT+TGG + chr1_3:48565369-48565388 None:intergenic 40.0%
TATGTGTGGTACTTGATGGA+AGG - chr1_3:48565397-48565416 Msa0122210:intron 40.0%
GCTTCAACATATGCATTGTG+TGG + chr1_3:48565429-48565448 None:intergenic 40.0%
TAAGAATACCACCAACAACG+TGG + chr1_3:48565484-48565503 None:intergenic 40.0%
ATTTAGCCATCACTGCAGTA+GGG + chr1_3:48565625-48565644 None:intergenic 40.0%
AATTTAGCCATCACTGCAGT+AGG + chr1_3:48565626-48565645 None:intergenic 40.0%
GTTTCCACCGTCTCAAAATC+AGG + chr1_3:48562940-48562959 None:intergenic 45.0%
! TTCTTCTTTGCCTTGATGGC+AGG + chr1_3:48562962-48562981 None:intergenic 45.0%
TACCGATCCTTCAGATGTTG+AGG - chr1_3:48563276-48563295 Msa0122210:three_prime_UTR 45.0%
GACCTCAACATCTGAAGGAT+CGG + chr1_3:48563281-48563300 None:intergenic 45.0%
GCTTAATAGGACCAGATGGA+TGG - chr1_3:48563447-48563466 Msa0122210:three_prime_UTR 45.0%
! TTAGAGTGATGGTGTGGTGT+GGG + chr1_3:48563526-48563545 None:intergenic 45.0%
! TTTAGAGTGATGGTGTGGTG+TGG + chr1_3:48563527-48563546 None:intergenic 45.0%
TCCAAGAACCGACTAATCCA+GGG - chr1_3:48563897-48563916 Msa0122210:intron 45.0%
!! GGATTGATCCCTGGATTAGT+CGG + chr1_3:48563908-48563927 None:intergenic 45.0%
AACGTGAACCATACTATGCC+AGG + chr1_3:48564328-48564347 None:intergenic 45.0%
ACTGTTACTGCCAAGTTCCA+AGG - chr1_3:48564467-48564486 Msa0122210:intron 45.0%
ACACACACTTTGGGTGTCTT+AGG + chr1_3:48564591-48564610 None:intergenic 45.0%
AGTCCCTGCAGAAACTACAA+GGG + chr1_3:48564640-48564659 None:intergenic 45.0%
GCATGTAGATCACACGAGTT+TGG - chr1_3:48565123-48565142 Msa0122210:CDS 45.0%
GGGTTATGTGTGGTACTTGA+TGG - chr1_3:48565393-48565412 Msa0122210:intron 45.0%
TTGAAGCACAACCACGTTGT+TGG - chr1_3:48565470-48565489 Msa0122210:intron 45.0%
CTTTGTAATTATGCCGCCAG+AGG + chr1_3:48565573-48565592 None:intergenic 45.0%
! TCTTTTACGTAGCGACAACC+AGG - chr1_3:48565885-48565904 Msa0122210:five_prime_UTR 45.0%
! CTTTTACGTAGCGACAACCA+GGG - chr1_3:48565886-48565905 Msa0122210:five_prime_UTR 45.0%
GCGTCGTCCACATACAACTA+CGG - chr1_3:48563111-48563130 Msa0122210:three_prime_UTR 50.0%
GCGAGAAGAAGGAATTGTCG+TGG - chr1_3:48563179-48563198 Msa0122210:three_prime_UTR 50.0%
!! TGGGCACTGACCAGAGTAAA+TGG + chr1_3:48563507-48563526 None:intergenic 50.0%
GTCCAAGAACCGACTAATCC+AGG - chr1_3:48563896-48563915 Msa0122210:intron 50.0%
!! TCCCTGGATTAGTCGGTTCT+TGG + chr1_3:48563901-48563920 None:intergenic 50.0%
TGGACAATGGGATTGATCCC+TGG + chr1_3:48563917-48563936 None:intergenic 50.0%
TGGCCACATCTTCCTTGAAG+TGG - chr1_3:48564373-48564392 Msa0122210:intron 50.0%
TGGCCACTTCAAGGAAGATG+TGG + chr1_3:48564379-48564398 None:intergenic 50.0%
TCTTCCTTGAAGTGGCCATG+AGG - chr1_3:48564381-48564400 Msa0122210:intron 50.0%
AACACCTCATGGCCACTTCA+AGG + chr1_3:48564388-48564407 None:intergenic 50.0%
CCTCATGCTCAAACACCTCA+TGG + chr1_3:48564399-48564418 None:intergenic 50.0%
! CCATGAGGTGTTTGAGCATG+AGG - chr1_3:48564396-48564415 Msa0122210:intron 50.0%
!! AGTGTGCTAGCCTTGGAACT+TGG + chr1_3:48564480-48564499 None:intergenic 50.0%
GAGTCCCTGCAGAAACTACA+AGG + chr1_3:48564641-48564660 None:intergenic 50.0%
TCTTGACTGAATGTGGGACG+TGG - chr1_3:48565372-48565391 Msa0122210:intron 50.0%
CTTGACTGAATGTGGGACGT+GGG - chr1_3:48565373-48565392 Msa0122210:intron 50.0%
AAGCACAACCACGTTGTTGG+TGG - chr1_3:48565473-48565492 Msa0122210:intron 50.0%
TAGATATCGTTGCTGTGGGG+TGG - chr1_3:48565527-48565546 Msa0122210:CDS 50.0%
CCAGAGGAGAAGCAAAAACC+TGG + chr1_3:48565557-48565576 None:intergenic 50.0%
! CCAGGTTTTTGCTTCTCCTC+TGG - chr1_3:48565554-48565573 Msa0122210:CDS 50.0%
! GGTTTTTGCTTCTCCTCTGG+CGG - chr1_3:48565557-48565576 Msa0122210:CDS 50.0%
GGCAATTCGTGTTTAGACCC+TGG + chr1_3:48565906-48565925 None:intergenic 50.0%
ACGGTGGAAACCTGCCATCA+AGG - chr1_3:48562949-48562968 Msa0122210:three_prime_UTR 55.0%
ATCTCTCACCACCACCACTC+TGG - chr1_3:48563051-48563070 Msa0122210:three_prime_UTR 55.0%
! GGTGCTGCCGCCATTATCAT+TGG - chr1_3:48563072-48563091 Msa0122210:three_prime_UTR 55.0%
AGGTTTCAGCGGCGAGAAGA+AGG - chr1_3:48563168-48563187 Msa0122210:three_prime_UTR 55.0%
TTGTCGTGGCATTGCGTGCA+AGG - chr1_3:48563193-48563212 Msa0122210:three_prime_UTR 55.0%
TGGCATTGCGTGCAAGGTTG+TGG - chr1_3:48563199-48563218 Msa0122210:three_prime_UTR 55.0%
!! GCGTCCGTATTTTTGCCGTG+CGG - chr1_3:48563623-48563642 Msa0122210:intron 55.0%
GGCTCCGCACGGCAAAAATA+CGG + chr1_3:48563630-48563649 None:intergenic 55.0%
! TGTGGGACGTGGGTTATGTG+TGG - chr1_3:48565383-48565402 Msa0122210:intron 55.0%
TCCTCACCCTACTGCAGTGA+TGG - chr1_3:48565616-48565635 Msa0122210:CDS 55.0%
TAATGGCGGCAGCACCAGAG+TGG + chr1_3:48563068-48563087 None:intergenic 60.0%
! TTTTTGCCGTGCGGAGCCTG+AGG - chr1_3:48563632-48563651 Msa0122210:intron 60.0%
CAAACACCTCAGGCTCCGCA+CGG + chr1_3:48563641-48563660 None:intergenic 60.0%
GCCATCACTGCAGTAGGGTG+AGG + chr1_3:48565620-48565639 None:intergenic 60.0%
CGGCAGCACCAGAGTGGTGG+TGG + chr1_3:48563062-48563081 None:intergenic 70.0%
TGGCGGCAGCACCAGAGTGG+TGG + chr1_3:48563065-48563084 None:intergenic 70.0%
TTGCTGTGGGGTGGCGTGCC+AGG - chr1_3:48565536-48565555 Msa0122210:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 48562883 48565926 48562883 ID=Msa0122210;Name=Msa0122210
chr1_3 mRNA 48562883 48565926 48562883 ID=Msa0122210-mRNA-1;Parent=Msa0122210;Name=Msa0122210-mRNA-1;_AED=0.15;_eAED=0.15;_QI=163|1|1|1|0.75|0.6|5|634|170
chr1_3 exon 48562883 48563491 48562883 ID=Msa0122210-mRNA-1:exon:14684;Parent=Msa0122210-mRNA-1
chr1_3 exon 48564045 48564163 48564045 ID=Msa0122210-mRNA-1:exon:14683;Parent=Msa0122210-mRNA-1
chr1_3 exon 48565100 48565187 48565100 ID=Msa0122210-mRNA-1:exon:14682;Parent=Msa0122210-mRNA-1
chr1_3 exon 48565294 48565372 48565294 ID=Msa0122210-mRNA-1:exon:14681;Parent=Msa0122210-mRNA-1
chr1_3 exon 48565512 48565926 48565512 ID=Msa0122210-mRNA-1:exon:14680;Parent=Msa0122210-mRNA-1
chr1_3 five_prime_UTR 48565764 48565926 48565764 ID=Msa0122210-mRNA-1:five_prime_utr;Parent=Msa0122210-mRNA-1
chr1_3 CDS 48565512 48565763 48565512 ID=Msa0122210-mRNA-1:cds;Parent=Msa0122210-mRNA-1
chr1_3 CDS 48565294 48565372 48565294 ID=Msa0122210-mRNA-1:cds;Parent=Msa0122210-mRNA-1
chr1_3 CDS 48565100 48565187 48565100 ID=Msa0122210-mRNA-1:cds;Parent=Msa0122210-mRNA-1
chr1_3 CDS 48564070 48564163 48564070 ID=Msa0122210-mRNA-1:cds;Parent=Msa0122210-mRNA-1
chr1_3 three_prime_UTR 48564045 48564069 48564045 ID=Msa0122210-mRNA-1:three_prime_utr;Parent=Msa0122210-mRNA-1
chr1_3 three_prime_UTR 48562883 48563491 48562883 ID=Msa0122210-mRNA-1:three_prime_utr;Parent=Msa0122210-mRNA-1
Gene Sequence

>Msa0122210

ATGATATCTCTCACCACCACCACTCTGGTGCTGCCGCCATTATCATTGGTCACATGTTCAGCGGCGCGTCGTCCACATACAACTACGGTCAAAACTGACAGAAAACAAAGGCAAAACAATGCAGGTTTCAGCGGCGAGAAGAAGGAATTGTCGTGGCATTGCGTGCAAGGTTGTGGTGCTTGTTGTAAGCTTCAAAAAGGTCCTTCTTATCCATCTCCTGAAGAAATTTTTACCGATCCTTCAGATGTTGAGCTCTACAATAGCTTAATAGGACCAGATGGATGGTGTATACATTATGAAAAGAGTAGCAGAAAATGTTCCATTTACTCTGAGCGTCCGTATTTTTGCCGTGCGGAGCCTGAGGTGTTTGAATCTTTGTTTGGAGTTAAACAGAAGAATTTCAATAAGGAGGCATGCAGTTTCTGCAGGGACTCAATTAAGGCAATTTATGGTTCCAATTCAAAGGAACTTCATAATTTTGACGAGTCAATTAGGAGTTCTTCTTCTAGTTAG

Protein sequence

>Msa0122210

MISLTTTTLVLPPLSLVTCSAARRPHTTTVKTDRKQRQNNAGFSGEKKELSWHCVQGCGACCKLQKGPSYPSPEEIFTDPSDVELYNSLIGPDGWCIHYEKSSRKCSIYSERPYFCRAEPEVFESLFGVKQKNFNKEACSFCRDSIKAIYGSNSKELHNFDESIRSSSSS*