Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181020 | XP_003626978.1 | 92.500 | 240 | 17 | 1 | 1 | 240 | 1 | 239 | 2.70e-152 | 433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181020 | sp|Q9LVW6|THA8_ARATH | 45.089 | 224 | 110 | 6 | 1 | 222 | 1 | 213 | 2.45e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001540 | Msa1181020 | 0.809282 | 2.043627e-50 | -8.615850e-47 |
| Msa0077910 | Msa1181020 | 0.819018 | 1.447594e-52 | -8.615850e-47 |
| Msa0620020 | Msa1181020 | 0.816363 | 5.748867e-52 | -8.615850e-47 |
| Msa0620050 | Msa1181020 | 0.807481 | 4.948396e-50 | -8.615850e-47 |
| Msa0706450 | Msa1181020 | 0.800055 | 1.724366e-48 | -8.615850e-47 |
| Msa0125800 | Msa1181020 | 0.817514 | 3.170012e-52 | -8.615850e-47 |
| Msa0155550 | Msa1181020 | 0.816653 | 4.950627e-52 | -8.615850e-47 |
| Msa0164530 | Msa1181020 | 0.802811 | 4.699478e-49 | -8.615850e-47 |
| Msa0164540 | Msa1181020 | 0.813325 | 2.710444e-51 | -8.615850e-47 |
| Msa0170440 | Msa1181020 | 0.819063 | 1.413624e-52 | -8.615850e-47 |
| Msa0176710 | Msa1181020 | 0.808018 | 3.806616e-50 | -8.615850e-47 |
| Msa0380360 | Msa1181020 | 0.800550 | 1.367334e-48 | -8.615850e-47 |
| Msa1013560 | Msa1181020 | 0.808098 | 3.659141e-50 | -8.615850e-47 |
| Msa0280140 | Msa1181020 | 0.802386 | 5.748943e-49 | -8.615850e-47 |
| Msa1126310 | Msa1181020 | 0.819271 | 1.267567e-52 | -8.615850e-47 |
| Msa1167160 | Msa1181020 | 0.806434 | 8.240032e-50 | -8.615850e-47 |
| Msa1181020 | Msa1208630 | 0.806785 | 6.949773e-50 | -8.615850e-47 |
| Msa1181020 | Msa1250500 | 0.800613 | 1.327660e-48 | -8.615850e-47 |
| Msa1181020 | Msa1258940 | 0.806228 | 9.108845e-50 | -8.615850e-47 |
| Msa1181020 | Msa1259470 | 0.801226 | 9.948146e-49 | -8.615850e-47 |
| Msa1181020 | Msa1294940 | 0.810574 | 1.077089e-50 | -8.615850e-47 |
| Msa1181020 | Msa1305650 | 0.807564 | 4.752397e-50 | -8.615850e-47 |
| Msa1181020 | Msa1375600 | 0.818373 | 2.027711e-52 | -8.615850e-47 |
| Msa1181020 | Msa1376560 | 0.800773 | 1.231413e-48 | -8.615850e-47 |
| Msa1181020 | Msa1376590 | 0.801987 | 6.946035e-49 | -8.615850e-47 |
| Msa1181020 | Msa1426880 | 0.802149 | 6.432520e-49 | -8.615850e-47 |
| Msa1181020 | Msa1437320 | 0.805737 | 1.155500e-49 | -8.615850e-47 |
| Msa1181020 | Msa1456390 | 0.839044 | 2.005396e-57 | -8.615850e-47 |
| Msa0969050 | Msa1181020 | 0.811495 | 6.804088e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181020 | MtrunA17_Chr8g0340151 | 92.500 | 240 | 17 | 1 | 1 | 240 | 1 | 239 | 2.48e-156 | 433 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181020 | AT3G27750.1 | 45.089 | 224 | 110 | 6 | 1 | 222 | 1 | 213 | 2.50e-53 | 172 |
| Msa1181020 | AT5G09315.1 | 30.481 | 187 | 113 | 4 | 42 | 213 | 45 | 229 | 7.72e-17 | 77.8 |
Find 87 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAAATTACAACGTATT+TGG | 0.185295 | 8_1:-15281334 | None:intergenic |
| CGTGTGGTGGTTGAGGGTTT+TGG | 0.194583 | 8_1:-15279590 | None:intergenic |
| GATAACGAAGGTTATCTAAA+TGG | 0.241425 | 8_1:-15279480 | None:intergenic |
| GATTAAGCGGGTTAGGGTTT+TGG | 0.244148 | 8_1:-15279771 | None:intergenic |
| CGGATTTGATTAAGCGGGTT+AGG | 0.279881 | 8_1:-15279778 | None:intergenic |
| AGTAATGGGTTTAAGGGTTT+TGG | 0.283197 | 8_1:+15281099 | Msa1181020:CDS |
| GTTTGAGGAAAGTGGGGTTT+TGG | 0.285909 | 8_1:-15279547 | None:intergenic |
| TTTGAAGTTGGGTTTGAGTT+TGG | 0.306107 | 8_1:-15279748 | None:intergenic |
| AAGAAGCCATTGAAATGAAA+TGG | 0.316352 | 8_1:-15279517 | None:intergenic |
| AAGGCTAAATTCAATACGTT+TGG | 0.323424 | 8_1:+15281171 | Msa1181020:CDS |
| TTGGGGATTGAGAATGGTGG+TGG | 0.324162 | 8_1:-15279571 | None:intergenic |
| AGGCTAAATTCAATACGTTT+GGG | 0.325197 | 8_1:+15281172 | Msa1181020:CDS |
| GGGTTTGAGTTTGGGTTTGT+GGG | 0.327589 | 8_1:-15279739 | None:intergenic |
| ATCAAAGTTAAAACCCCTTT+CGG | 0.331632 | 8_1:-15280961 | None:intergenic |
| CCTTGAGCATTTCAGCATAA+AGG | 0.333340 | 8_1:-15279901 | None:intergenic |
| TTGAAGTTGGGTTTGAGTTT+GGG | 0.335556 | 8_1:-15279747 | None:intergenic |
| TTTGGGTTTGTGGGTTAGTT+CGG | 0.340290 | 8_1:-15279730 | None:intergenic |
| CTTGAGCATTTCAGCATAAA+GGG | 0.349832 | 8_1:-15279900 | None:intergenic |
| TCACTCCCATTTCATTTCAA+TGG | 0.366708 | 8_1:+15279511 | Msa1181020:exon |
| GTGGTGGGGTTTGAGGAAAG+TGG | 0.369136 | 8_1:-15279555 | None:intergenic |
| TGGGTTTGAGTTTGGGTTTG+TGG | 0.370875 | 8_1:-15279740 | None:intergenic |
| ATAACGAAGGTTATCTAAAT+GGG | 0.373995 | 8_1:-15279479 | None:intergenic |
| GGGTGGGATTGGGTGTGATG+AGG | 0.383981 | 8_1:+15280936 | Msa1181020:CDS |
| GAGGAGAGAATTGTTGGTTA+GGG | 0.384158 | 8_1:+15281005 | Msa1181020:CDS |
| AGAGGAGAGAATTGTTGGTT+AGG | 0.384913 | 8_1:+15281004 | Msa1181020:CDS |
| CTTGGATTGCTTCTATGCTT+AGG | 0.385874 | 8_1:-15279682 | None:intergenic |
| GAGAATGGTGGTGGGGTTTG+AGG | 0.394375 | 8_1:-15279562 | None:intergenic |
| GTTGAAAAGGAGTGGGTGGG+GGG | 0.404754 | 8_1:+15281038 | Msa1181020:CDS |
| AGATTCTTGATGATTATGAT+AGG | 0.406909 | 8_1:+15281142 | Msa1181020:CDS |
| TGGGGATTGAGAATGGTGGT+GGG | 0.409114 | 8_1:-15279570 | None:intergenic |
| TACGAAGAGGAGAGAATTGT+TGG | 0.412405 | 8_1:+15280999 | Msa1181020:CDS |
| CTCCGGCGTGTGGTGGTTGA+GGG | 0.412686 | 8_1:-15279596 | None:intergenic |
| GGTGGGGTTTGAGGAAAGTG+GGG | 0.422489 | 8_1:-15279553 | None:intergenic |
| GCTCCGGCGTGTGGTGGTTG+AGG | 0.444449 | 8_1:-15279597 | None:intergenic |
| GGATTTGATTAAGCGGGTTA+GGG | 0.445768 | 8_1:-15279777 | None:intergenic |
| ATTTGATGAGTATGTTGTTA+AGG | 0.447349 | 8_1:+15281071 | Msa1181020:CDS |
| TGGTGGGGTTTGAGGAAAGT+GGG | 0.450538 | 8_1:-15279554 | None:intergenic |
| TGTTGAAAAGGAGTGGGTGG+GGG | 0.451693 | 8_1:+15281037 | Msa1181020:CDS |
| CGAGGGTGGGTTGTTCTTGA+CGG | 0.452730 | 8_1:-15279829 | None:intergenic |
| AACCGTGGGTAAAATGTGTT+GGG | 0.462091 | 8_1:-15281216 | None:intergenic |
| AGAAGCCATTGAAATGAAAT+GGG | 0.471332 | 8_1:-15279516 | None:intergenic |
| ACTTTGATTAAAGCGGTTGT+TGG | 0.495524 | 8_1:+15280976 | Msa1181020:CDS |
| CTTTGATGAGTGGTCCACGC+TGG | 0.500469 | 8_1:-15279652 | None:intergenic |
| AAACCGTGGGTAAAATGTGT+TGG | 0.504937 | 8_1:-15281217 | None:intergenic |
| TCAGCCGTCCGATCTGAATA+CGG | 0.504958 | 8_1:+15279866 | Msa1181020:CDS |
| ATGTTGAAAAGGAGTGGGTG+GGG | 0.507002 | 8_1:+15281036 | Msa1181020:CDS |
| GGGTTTATGAGATGTTGAAA+AGG | 0.515522 | 8_1:+15281025 | Msa1181020:CDS |
| TTGCAGGTGCTGGGGAATTG+TGG | 0.522737 | 8_1:+15280868 | Msa1181020:intron |
| GATTGAGGAGATTGAAGTGG+GGG | 0.530714 | 8_1:+15280915 | Msa1181020:CDS |
| TTTGATGAGTGGTCCACGCT+GGG | 0.538037 | 8_1:-15279651 | None:intergenic |
| TTGATTGAGGAGATTGAAGT+GGG | 0.539482 | 8_1:+15280913 | Msa1181020:CDS |
| AGTGTACTGGAATGTAGCTC+CGG | 0.552029 | 8_1:-15279613 | None:intergenic |
| CTTCAATCTCCTCAATCAAA+CGG | 0.553390 | 8_1:-15280909 | None:intergenic |
| GGGGATTGAGAATGGTGGTG+GGG | 0.563873 | 8_1:-15279569 | None:intergenic |
| GGATTTGATAAATGATACGC+TGG | 0.565912 | 8_1:+15281295 | Msa1181020:three_prime_UTR |
| ATGAGATGTTGAAAAGGAGT+GGG | 0.572898 | 8_1:+15281031 | Msa1181020:CDS |
| GGCTAAATTCAATACGTTTG+GGG | 0.573047 | 8_1:+15281173 | Msa1181020:CDS |
| AGATGTTGAAAAGGAGTGGG+TGG | 0.577615 | 8_1:+15281034 | Msa1181020:CDS |
| AGATGTGGACCGTTTGATTG+AGG | 0.579251 | 8_1:+15280900 | Msa1181020:CDS |
| GAAGACACGAAGTGCGAGGG+TGG | 0.584193 | 8_1:-15279843 | None:intergenic |
| GGTGTGATGAGGATCCGAAA+GGG | 0.588590 | 8_1:+15280947 | Msa1181020:CDS |
| AGGAATCGTCCTTTGATGAG+TGG | 0.591397 | 8_1:-15279662 | None:intergenic |
| AACCCTCAACCACCACACGC+CGG | 0.593462 | 8_1:+15279594 | Msa1181020:CDS |
| GATGTTGAAAAGGAGTGGGT+GGG | 0.595811 | 8_1:+15281035 | Msa1181020:CDS |
| TTTGATTGAGGAGATTGAAG+TGG | 0.599103 | 8_1:+15280912 | Msa1181020:CDS |
| CAGCGTGGACCACTCATCAA+AGG | 0.603084 | 8_1:+15279653 | Msa1181020:CDS |
| TATGAGATGTTGAAAAGGAG+TGG | 0.605088 | 8_1:+15281030 | Msa1181020:CDS |
| CCTTTATGCTGAAATGCTCA+AGG | 0.605147 | 8_1:+15279901 | Msa1181020:CDS |
| TGATTGAGGAGATTGAAGTG+GGG | 0.607133 | 8_1:+15280914 | Msa1181020:CDS |
| CTGAGAAGACACGAAGTGCG+AGG | 0.610021 | 8_1:-15279847 | None:intergenic |
| TGAGAAGACACGAAGTGCGA+GGG | 0.610177 | 8_1:-15279846 | None:intergenic |
| TAGGTCGGATTTGATTAAGC+GGG | 0.610428 | 8_1:-15279783 | None:intergenic |
| AGTGGTCCACGCTGGGAACG+AGG | 0.618418 | 8_1:-15279644 | None:intergenic |
| TTGTGGTATGCATGAAGATG+TGG | 0.620298 | 8_1:+15280885 | Msa1181020:CDS |
| AATGTAGCTCCGGCGTGTGG+TGG | 0.621885 | 8_1:-15279603 | None:intergenic |
| AAGCGGTTGTTGGTACGAAG+AGG | 0.629816 | 8_1:+15280986 | Msa1181020:CDS |
| ATTGAGGAGATTGAAGTGGG+GGG | 0.630199 | 8_1:+15280916 | Msa1181020:CDS |
| CTAGGTCGGATTTGATTAAG+CGG | 0.633097 | 8_1:-15279784 | None:intergenic |
| GGGTGTGATGAGGATCCGAA+AGG | 0.644574 | 8_1:+15280946 | Msa1181020:CDS |
| GTGTGATGAGGATCCGAAAG+GGG | 0.655255 | 8_1:+15280948 | Msa1181020:CDS |
| AAGACACGAAGTGCGAGGGT+GGG | 0.665738 | 8_1:-15279842 | None:intergenic |
| GATCAGCACCGTATTCAGAT+CGG | 0.674265 | 8_1:-15279874 | None:intergenic |
| TACATTCCAGTACACTGCGG+CGG | 0.676161 | 8_1:+15279620 | Msa1181020:CDS |
| GGCGGTCCTCGTTCCCAGCG+TGG | 0.684018 | 8_1:+15279638 | Msa1181020:CDS |
| AGCACCGTATTCAGATCGGA+CGG | 0.685718 | 8_1:-15279870 | None:intergenic |
| GTGAAGCACAACGATAACGA+AGG | 0.721551 | 8_1:-15279492 | None:intergenic |
| AGCTACATTCCAGTACACTG+CGG | 0.817261 | 8_1:+15279617 | Msa1181020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAGATTCATTTAATTA+AGG | + | chr8_1:15279943-15279962 | Msa1181020:intron | 10.0% |
| !! | AAAATTGTAAAAAAAAATTC+AGG | + | chr8_1:15280287-15280306 | Msa1181020:intron | 10.0% |
| !! | AATCCAATTAATAAAAAATT+TGG | - | chr8_1:15281280-15281299 | None:intergenic | 10.0% |
| !!! | ATTTTAGATTCATTTAATTA+AGG | + | chr8_1:15279943-15279962 | Msa1181020:intron | 10.0% |
| !! | AAAATTGTAAAAAAAAATTC+AGG | + | chr8_1:15280287-15280306 | Msa1181020:intron | 10.0% |
| !! | AATCCAATTAATAAAAAATT+TGG | - | chr8_1:15281280-15281299 | None:intergenic | 10.0% |
| !!! | TGGAAAAAAAATTTTTTTGA+AGG | + | chr8_1:15280317-15280336 | Msa1181020:intron | 15.0% |
| !!! | ACTCCAAATTTTTTATTAAT+TGG | + | chr8_1:15281274-15281293 | Msa1181020:three_prime_UTR | 15.0% |
| !!! | TGGAAAAAAAATTTTTTTGA+AGG | + | chr8_1:15280317-15280336 | Msa1181020:intron | 15.0% |
| !!! | ACTCCAAATTTTTTATTAAT+TGG | + | chr8_1:15281274-15281293 | Msa1181020:three_prime_UTR | 15.0% |
| !! | TTAACTTATTAAACTTTGCA+GGG | - | chr8_1:15280047-15280066 | None:intergenic | 20.0% |
| !!! | TTTAACTTATTAAACTTTGC+AGG | - | chr8_1:15280048-15280067 | None:intergenic | 20.0% |
| !!! | CTGAAAAAACTGAAATTTTT+CGG | + | chr8_1:15280260-15280279 | Msa1181020:intron | 20.0% |
| !! | AAAAAAATTCAGGAAAAATC+TGG | + | chr8_1:15280297-15280316 | Msa1181020:intron | 20.0% |
| !!! | TTTTTACTTATAATAGTGAC+CGG | + | chr8_1:15280592-15280611 | Msa1181020:intron | 20.0% |
| !! | TGTAAATAAAGAATTATCGT+CGG | + | chr8_1:15280746-15280765 | Msa1181020:intron | 20.0% |
| !! | AAATCAAATTACAACGTATT+TGG | - | chr8_1:15281337-15281356 | None:intergenic | 20.0% |
| !! | TTAACTTATTAAACTTTGCA+GGG | - | chr8_1:15280047-15280066 | None:intergenic | 20.0% |
| !!! | TTTAACTTATTAAACTTTGC+AGG | - | chr8_1:15280048-15280067 | None:intergenic | 20.0% |
| !!! | CTGAAAAAACTGAAATTTTT+CGG | + | chr8_1:15280260-15280279 | Msa1181020:intron | 20.0% |
| !! | AAAAAAATTCAGGAAAAATC+TGG | + | chr8_1:15280297-15280316 | Msa1181020:intron | 20.0% |
| !!! | TTTTTACTTATAATAGTGAC+CGG | + | chr8_1:15280592-15280611 | Msa1181020:intron | 20.0% |
| !! | TGTAAATAAAGAATTATCGT+CGG | + | chr8_1:15280746-15280765 | Msa1181020:intron | 20.0% |
| !! | AAATCAAATTACAACGTATT+TGG | - | chr8_1:15281337-15281356 | None:intergenic | 20.0% |
| ! | TAACTTATTAAACTTTGCAG+GGG | - | chr8_1:15280046-15280065 | None:intergenic | 25.0% |
| ! | TAAGGAAAAAAATTAAGCCA+GGG | - | chr8_1:15280146-15280165 | None:intergenic | 25.0% |
| ! | ATAAGGAAAAAAATTAAGCC+AGG | - | chr8_1:15280147-15280166 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAAAATAAGCCA+GGG | + | chr8_1:15280336-15280355 | Msa1181020:intron | 25.0% |
| ! | TTTAACTGATTAAACTTTGC+AGG | + | chr8_1:15280435-15280454 | Msa1181020:intron | 25.0% |
| ! | TTAACTGATTAAACTTTGCA+GGG | + | chr8_1:15280436-15280455 | Msa1181020:intron | 25.0% |
| ! | TGTATGCTGTCATTAATTAA+AGG | - | chr8_1:15280540-15280559 | None:intergenic | 25.0% |
| !!! | GGTTTTAACTTTGATTAAAG+CGG | + | chr8_1:15280969-15280988 | Msa1181020:CDS | 25.0% |
| ! | ATTTGATGAGTATGTTGTTA+AGG | + | chr8_1:15281071-15281090 | Msa1181020:CDS | 25.0% |
| !!! | TTGTTAAGGTTTTGAGTAAT+GGG | + | chr8_1:15281085-15281104 | Msa1181020:CDS | 25.0% |
| !! | AGATTCTTGATGATTATGAT+AGG | + | chr8_1:15281142-15281161 | Msa1181020:CDS | 25.0% |
| !!! | TGATTATGATAGGTTTTGTA+AGG | + | chr8_1:15281152-15281171 | Msa1181020:CDS | 25.0% |
| !! | TAACTACATTTTATCTGAGT+TGG | + | chr8_1:15281390-15281409 | Msa1181020:three_prime_UTR | 25.0% |
| !! | AACTACATTTTATCTGAGTT+GGG | + | chr8_1:15281391-15281410 | Msa1181020:three_prime_UTR | 25.0% |
| ! | TAACTTATTAAACTTTGCAG+GGG | - | chr8_1:15280046-15280065 | None:intergenic | 25.0% |
| ! | TAAGGAAAAAAATTAAGCCA+GGG | - | chr8_1:15280146-15280165 | None:intergenic | 25.0% |
| ! | ATAAGGAAAAAAATTAAGCC+AGG | - | chr8_1:15280147-15280166 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAAAATAAGCCA+GGG | + | chr8_1:15280336-15280355 | Msa1181020:intron | 25.0% |
| ! | TTTAACTGATTAAACTTTGC+AGG | + | chr8_1:15280435-15280454 | Msa1181020:intron | 25.0% |
| ! | TTAACTGATTAAACTTTGCA+GGG | + | chr8_1:15280436-15280455 | Msa1181020:intron | 25.0% |
| ! | TGTATGCTGTCATTAATTAA+AGG | - | chr8_1:15280540-15280559 | None:intergenic | 25.0% |
| !!! | GGTTTTAACTTTGATTAAAG+CGG | + | chr8_1:15280969-15280988 | Msa1181020:CDS | 25.0% |
| ! | ATTTGATGAGTATGTTGTTA+AGG | + | chr8_1:15281071-15281090 | Msa1181020:CDS | 25.0% |
| !!! | TTGTTAAGGTTTTGAGTAAT+GGG | + | chr8_1:15281085-15281104 | Msa1181020:CDS | 25.0% |
| !! | AGATTCTTGATGATTATGAT+AGG | + | chr8_1:15281142-15281161 | Msa1181020:CDS | 25.0% |
| !!! | TGATTATGATAGGTTTTGTA+AGG | + | chr8_1:15281152-15281171 | Msa1181020:CDS | 25.0% |
| !! | TAACTACATTTTATCTGAGT+TGG | + | chr8_1:15281390-15281409 | Msa1181020:three_prime_UTR | 25.0% |
| AGAAGCCATTGAAATGAAAT+GGG | - | chr8_1:15279519-15279538 | None:intergenic | 30.0% | |
| AAGAAGCCATTGAAATGAAA+TGG | - | chr8_1:15279520-15279539 | None:intergenic | 30.0% | |
| AAGGAAAAAAATTAAGCCAG+GGG | - | chr8_1:15280145-15280164 | None:intergenic | 30.0% | |
| GAAGGAAAAAAAAATAAGCC+AGG | + | chr8_1:15280335-15280354 | Msa1181020:intron | 30.0% | |
| AGGAAAAAAAAATAAGCCAG+GGG | + | chr8_1:15280337-15280356 | Msa1181020:intron | 30.0% | |
| CAATTTACCAAAAATGGCAT+GGG | - | chr8_1:15280377-15280396 | None:intergenic | 30.0% | |
| TAACTGATTAAACTTTGCAG+GGG | + | chr8_1:15280437-15280456 | Msa1181020:intron | 30.0% | |
| AAAAAAGGATTAACGATTGC+AGG | + | chr8_1:15280464-15280483 | Msa1181020:intron | 30.0% | |
| AAAAAGGATTAACGATTGCA+GGG | + | chr8_1:15280465-15280484 | Msa1181020:intron | 30.0% | |
| !!! | ACTCTTTTGAACTTTTTTGC+AGG | + | chr8_1:15280852-15280871 | Msa1181020:intron | 30.0% |
| ATCAAAGTTAAAACCCCTTT+CGG | - | chr8_1:15280964-15280983 | None:intergenic | 30.0% | |
| !!! | GTTGTTAAGGTTTTGAGTAA+TGG | + | chr8_1:15281084-15281103 | Msa1181020:CDS | 30.0% |
| !!! | GTTTTGAGTAATGGGTTTAA+GGG | + | chr8_1:15281093-15281112 | Msa1181020:CDS | 30.0% |
| AAGGCTAAATTCAATACGTT+TGG | + | chr8_1:15281171-15281190 | Msa1181020:CDS | 30.0% | |
| AGGCTAAATTCAATACGTTT+GGG | + | chr8_1:15281172-15281191 | Msa1181020:CDS | 30.0% | |
| AGAAGCCATTGAAATGAAAT+GGG | - | chr8_1:15279519-15279538 | None:intergenic | 30.0% | |
| AAGAAGCCATTGAAATGAAA+TGG | - | chr8_1:15279520-15279539 | None:intergenic | 30.0% | |
| AAGGAAAAAAATTAAGCCAG+GGG | - | chr8_1:15280145-15280164 | None:intergenic | 30.0% | |
| GAAGGAAAAAAAAATAAGCC+AGG | + | chr8_1:15280335-15280354 | Msa1181020:intron | 30.0% | |
| AGGAAAAAAAAATAAGCCAG+GGG | + | chr8_1:15280337-15280356 | Msa1181020:intron | 30.0% | |
| CAATTTACCAAAAATGGCAT+GGG | - | chr8_1:15280377-15280396 | None:intergenic | 30.0% | |
| TAACTGATTAAACTTTGCAG+GGG | + | chr8_1:15280437-15280456 | Msa1181020:intron | 30.0% | |
| AAAAAAGGATTAACGATTGC+AGG | + | chr8_1:15280464-15280483 | Msa1181020:intron | 30.0% | |
| AAAAAGGATTAACGATTGCA+GGG | + | chr8_1:15280465-15280484 | Msa1181020:intron | 30.0% | |
| !!! | ACTCTTTTGAACTTTTTTGC+AGG | + | chr8_1:15280852-15280871 | Msa1181020:intron | 30.0% |
| ATCAAAGTTAAAACCCCTTT+CGG | - | chr8_1:15280964-15280983 | None:intergenic | 30.0% | |
| !!! | GTTGTTAAGGTTTTGAGTAA+TGG | + | chr8_1:15281084-15281103 | Msa1181020:CDS | 30.0% |
| !!! | GTTTTGAGTAATGGGTTTAA+GGG | + | chr8_1:15281093-15281112 | Msa1181020:CDS | 30.0% |
| AAGGCTAAATTCAATACGTT+TGG | + | chr8_1:15281171-15281190 | Msa1181020:CDS | 30.0% | |
| AGGCTAAATTCAATACGTTT+GGG | + | chr8_1:15281172-15281191 | Msa1181020:CDS | 30.0% | |
| TCACTCCCATTTCATTTCAA+TGG | + | chr8_1:15279511-15279530 | Msa1181020:exon | 35.0% | |
| !! | GTTTTAGCGTTTGAATTGCT+TGG | - | chr8_1:15279703-15279722 | None:intergenic | 35.0% |
| ! | TTGAAGTTGGGTTTGAGTTT+GGG | - | chr8_1:15279750-15279769 | None:intergenic | 35.0% |
| ! | TTTGAAGTTGGGTTTGAGTT+TGG | - | chr8_1:15279751-15279770 | None:intergenic | 35.0% |
| !!! | TAGGGTTTTGGTTTGAAGTT+GGG | - | chr8_1:15279762-15279781 | None:intergenic | 35.0% |
| !!! | TTAGGGTTTTGGTTTGAAGT+TGG | - | chr8_1:15279763-15279782 | None:intergenic | 35.0% |
| CTTGAGCATTTCAGCATAAA+GGG | - | chr8_1:15279903-15279922 | None:intergenic | 35.0% | |
| CTAAAATGTAGACTTGCATG+CGG | - | chr8_1:15279930-15279949 | None:intergenic | 35.0% | |
| ! | AAAAAGGATTAGCGATTGCA+GGG | - | chr8_1:15280018-15280037 | None:intergenic | 35.0% |
| ! | AAAAAAGGATTAGCGATTGC+AGG | - | chr8_1:15280019-15280038 | None:intergenic | 35.0% |
| GCAGTAATTAATTGGGTCAA+AGG | - | chr8_1:15280078-15280097 | None:intergenic | 35.0% | |
| TGACGTGGCAGTAATTAATT+GGG | - | chr8_1:15280085-15280104 | None:intergenic | 35.0% | |
| !!! | ATTTTTGGTAAATGCTGACG+TGG | - | chr8_1:15280100-15280119 | None:intergenic | 35.0% |
| ACGTCAGCATTTACCAAAAA+TGG | + | chr8_1:15280099-15280118 | Msa1181020:intron | 35.0% | |
| AGCATTTACCAAAAATGGCA+TGG | + | chr8_1:15280104-15280123 | Msa1181020:intron | 35.0% | |
| GCATTTACCAAAAATGGCAT+GGG | + | chr8_1:15280105-15280124 | Msa1181020:intron | 35.0% | |
| GCAATTTACCAAAAATGGCA+TGG | - | chr8_1:15280378-15280397 | None:intergenic | 35.0% | |
| CGTCAGCAATTTACCAAAAA+TGG | - | chr8_1:15280383-15280402 | None:intergenic | 35.0% | |
| !! | TTTTTGGTAAATTGCTGACG+TGG | + | chr8_1:15280383-15280402 | Msa1181020:intron | 35.0% |
| TCAGTGTCATATACATCATC+CGG | - | chr8_1:15280614-15280633 | None:intergenic | 35.0% | |
| !! | ATCGTCGGTGTCATATTATT+AGG | + | chr8_1:15280761-15280780 | Msa1181020:intron | 35.0% |
| CTTCAATCTCCTCAATCAAA+CGG | - | chr8_1:15280912-15280931 | None:intergenic | 35.0% | |
| TTTGATTGAGGAGATTGAAG+TGG | + | chr8_1:15280912-15280931 | Msa1181020:CDS | 35.0% | |
| TTGATTGAGGAGATTGAAGT+GGG | + | chr8_1:15280913-15280932 | Msa1181020:CDS | 35.0% | |
| ACTTTGATTAAAGCGGTTGT+TGG | + | chr8_1:15280976-15280995 | Msa1181020:CDS | 35.0% | |
| GGGTTTATGAGATGTTGAAA+AGG | + | chr8_1:15281025-15281044 | Msa1181020:CDS | 35.0% | |
| TATGAGATGTTGAAAAGGAG+TGG | + | chr8_1:15281030-15281049 | Msa1181020:CDS | 35.0% | |
| ATGAGATGTTGAAAAGGAGT+GGG | + | chr8_1:15281031-15281050 | Msa1181020:CDS | 35.0% | |
| !!! | GGTTTTGAGTAATGGGTTTA+AGG | + | chr8_1:15281092-15281111 | Msa1181020:CDS | 35.0% |
| !!! | AGTAATGGGTTTAAGGGTTT+TGG | + | chr8_1:15281099-15281118 | Msa1181020:CDS | 35.0% |
| GGCTAAATTCAATACGTTTG+GGG | + | chr8_1:15281173-15281192 | Msa1181020:CDS | 35.0% | |
| GGATTTGATAAATGATACGC+TGG | + | chr8_1:15281295-15281314 | Msa1181020:three_prime_UTR | 35.0% | |
| TCACTCCCATTTCATTTCAA+TGG | + | chr8_1:15279511-15279530 | Msa1181020:exon | 35.0% | |
| !! | GTTTTAGCGTTTGAATTGCT+TGG | - | chr8_1:15279703-15279722 | None:intergenic | 35.0% |
| ! | TTGAAGTTGGGTTTGAGTTT+GGG | - | chr8_1:15279750-15279769 | None:intergenic | 35.0% |
| ! | TTTGAAGTTGGGTTTGAGTT+TGG | - | chr8_1:15279751-15279770 | None:intergenic | 35.0% |
| !!! | TAGGGTTTTGGTTTGAAGTT+GGG | - | chr8_1:15279762-15279781 | None:intergenic | 35.0% |
| !!! | TTAGGGTTTTGGTTTGAAGT+TGG | - | chr8_1:15279763-15279782 | None:intergenic | 35.0% |
| CTTGAGCATTTCAGCATAAA+GGG | - | chr8_1:15279903-15279922 | None:intergenic | 35.0% | |
| CTAAAATGTAGACTTGCATG+CGG | - | chr8_1:15279930-15279949 | None:intergenic | 35.0% | |
| ! | AAAAAGGATTAGCGATTGCA+GGG | - | chr8_1:15280018-15280037 | None:intergenic | 35.0% |
| ! | AAAAAAGGATTAGCGATTGC+AGG | - | chr8_1:15280019-15280038 | None:intergenic | 35.0% |
| GCAGTAATTAATTGGGTCAA+AGG | - | chr8_1:15280078-15280097 | None:intergenic | 35.0% | |
| TGACGTGGCAGTAATTAATT+GGG | - | chr8_1:15280085-15280104 | None:intergenic | 35.0% | |
| !!! | ATTTTTGGTAAATGCTGACG+TGG | - | chr8_1:15280100-15280119 | None:intergenic | 35.0% |
| ACGTCAGCATTTACCAAAAA+TGG | + | chr8_1:15280099-15280118 | Msa1181020:intron | 35.0% | |
| AGCATTTACCAAAAATGGCA+TGG | + | chr8_1:15280104-15280123 | Msa1181020:intron | 35.0% | |
| GCATTTACCAAAAATGGCAT+GGG | + | chr8_1:15280105-15280124 | Msa1181020:intron | 35.0% | |
| GCAATTTACCAAAAATGGCA+TGG | - | chr8_1:15280378-15280397 | None:intergenic | 35.0% | |
| CGTCAGCAATTTACCAAAAA+TGG | - | chr8_1:15280383-15280402 | None:intergenic | 35.0% | |
| !! | TTTTTGGTAAATTGCTGACG+TGG | + | chr8_1:15280383-15280402 | Msa1181020:intron | 35.0% |
| TCAGTGTCATATACATCATC+CGG | - | chr8_1:15280614-15280633 | None:intergenic | 35.0% | |
| !! | ATCGTCGGTGTCATATTATT+AGG | + | chr8_1:15280761-15280780 | Msa1181020:intron | 35.0% |
| CTTCAATCTCCTCAATCAAA+CGG | - | chr8_1:15280912-15280931 | None:intergenic | 35.0% | |
| TTTGATTGAGGAGATTGAAG+TGG | + | chr8_1:15280912-15280931 | Msa1181020:CDS | 35.0% | |
| TTGATTGAGGAGATTGAAGT+GGG | + | chr8_1:15280913-15280932 | Msa1181020:CDS | 35.0% | |
| ACTTTGATTAAAGCGGTTGT+TGG | + | chr8_1:15280976-15280995 | Msa1181020:CDS | 35.0% | |
| GGGTTTATGAGATGTTGAAA+AGG | + | chr8_1:15281025-15281044 | Msa1181020:CDS | 35.0% | |
| TATGAGATGTTGAAAAGGAG+TGG | + | chr8_1:15281030-15281049 | Msa1181020:CDS | 35.0% | |
| ATGAGATGTTGAAAAGGAGT+GGG | + | chr8_1:15281031-15281050 | Msa1181020:CDS | 35.0% | |
| !!! | GGTTTTGAGTAATGGGTTTA+AGG | + | chr8_1:15281092-15281111 | Msa1181020:CDS | 35.0% |
| !!! | AGTAATGGGTTTAAGGGTTT+TGG | + | chr8_1:15281099-15281118 | Msa1181020:CDS | 35.0% |
| GGCTAAATTCAATACGTTTG+GGG | + | chr8_1:15281173-15281192 | Msa1181020:CDS | 35.0% | |
| GGATTTGATAAATGATACGC+TGG | + | chr8_1:15281295-15281314 | Msa1181020:three_prime_UTR | 35.0% | |
| CTTGGATTGCTTCTATGCTT+AGG | - | chr8_1:15279685-15279704 | None:intergenic | 40.0% | |
| !! | TTTGGGTTTGTGGGTTAGTT+CGG | - | chr8_1:15279733-15279752 | None:intergenic | 40.0% |
| !! | GGATTTGATTAAGCGGGTTA+GGG | - | chr8_1:15279780-15279799 | None:intergenic | 40.0% |
| TAGGTCGGATTTGATTAAGC+GGG | - | chr8_1:15279786-15279805 | None:intergenic | 40.0% | |
| CTAGGTCGGATTTGATTAAG+CGG | - | chr8_1:15279787-15279806 | None:intergenic | 40.0% | |
| ! | TTTTAGCGTAGCAACTAGGT+CGG | - | chr8_1:15279801-15279820 | None:intergenic | 40.0% |
| CCTTGAGCATTTCAGCATAA+AGG | - | chr8_1:15279904-15279923 | None:intergenic | 40.0% | |
| CCTTTATGCTGAAATGCTCA+AGG | + | chr8_1:15279901-15279920 | Msa1181020:CDS | 40.0% | |
| CTTTGCAGGGGCAAAAAAAA+AGG | - | chr8_1:15280449-15280468 | None:intergenic | 40.0% | |
| CTGACGTGGCAGTAATTAAT+TGG | - | chr8_1:15280086-15280105 | None:intergenic | 40.0% | |
| !!! | GTCAATTCCCATGCCATTTT+TGG | - | chr8_1:15280367-15280386 | None:intergenic | 40.0% |
| !!! | GTCAATTCCCATGCCATTTT+TGG | + | chr8_1:15280367-15280386 | Msa1181020:intron | 40.0% |
| CTTTGCAGGGGCAAAAAAAA+AGG | + | chr8_1:15280449-15280468 | Msa1181020:intron | 40.0% | |
| TTATTCGTCCCTGCAAATAG+GGG | - | chr8_1:15280507-15280526 | None:intergenic | 40.0% | |
| GTTATTCGTCCCTGCAAATA+GGG | - | chr8_1:15280508-15280527 | None:intergenic | 40.0% | |
| TGTTATTCGTCCCTGCAAAT+AGG | - | chr8_1:15280509-15280528 | None:intergenic | 40.0% | |
| !!! | TTGAACTTTTTTGCAGGTGC+TGG | + | chr8_1:15280858-15280877 | Msa1181020:intron | 40.0% |
| !!! | TGAACTTTTTTGCAGGTGCT+GGG | + | chr8_1:15280859-15280878 | Msa1181020:intron | 40.0% |
| TTGTGGTATGCATGAAGATG+TGG | + | chr8_1:15280885-15280904 | Msa1181020:CDS | 40.0% | |
| TGATTGAGGAGATTGAAGTG+GGG | + | chr8_1:15280914-15280933 | Msa1181020:CDS | 40.0% | |
| TACGAAGAGGAGAGAATTGT+TGG | + | chr8_1:15280999-15281018 | Msa1181020:CDS | 40.0% | |
| ! | AGAGGAGAGAATTGTTGGTT+AGG | + | chr8_1:15281004-15281023 | Msa1181020:CDS | 40.0% |
| ! | GAGGAGAGAATTGTTGGTTA+GGG | + | chr8_1:15281005-15281024 | Msa1181020:CDS | 40.0% |
| !!! | GTTTAAGGGTTTTGGTGATG+AGG | + | chr8_1:15281107-15281126 | Msa1181020:CDS | 40.0% |
| ! | AACCCAACACATTTTACCCA+CGG | + | chr8_1:15281214-15281233 | Msa1181020:three_prime_UTR | 40.0% |
| AACCGTGGGTAAAATGTGTT+GGG | - | chr8_1:15281219-15281238 | None:intergenic | 40.0% | |
| AAACCGTGGGTAAAATGTGT+TGG | - | chr8_1:15281220-15281239 | None:intergenic | 40.0% | |
| CTTGGATTGCTTCTATGCTT+AGG | - | chr8_1:15279685-15279704 | None:intergenic | 40.0% | |
| !! | TTTGGGTTTGTGGGTTAGTT+CGG | - | chr8_1:15279733-15279752 | None:intergenic | 40.0% |
| !! | GGATTTGATTAAGCGGGTTA+GGG | - | chr8_1:15279780-15279799 | None:intergenic | 40.0% |
| TAGGTCGGATTTGATTAAGC+GGG | - | chr8_1:15279786-15279805 | None:intergenic | 40.0% | |
| CTAGGTCGGATTTGATTAAG+CGG | - | chr8_1:15279787-15279806 | None:intergenic | 40.0% | |
| ! | TTTTAGCGTAGCAACTAGGT+CGG | - | chr8_1:15279801-15279820 | None:intergenic | 40.0% |
| CCTTGAGCATTTCAGCATAA+AGG | - | chr8_1:15279904-15279923 | None:intergenic | 40.0% | |
| CCTTTATGCTGAAATGCTCA+AGG | + | chr8_1:15279901-15279920 | Msa1181020:CDS | 40.0% | |
| CTTTGCAGGGGCAAAAAAAA+AGG | - | chr8_1:15280449-15280468 | None:intergenic | 40.0% | |
| CTGACGTGGCAGTAATTAAT+TGG | - | chr8_1:15280086-15280105 | None:intergenic | 40.0% | |
| !!! | GTCAATTCCCATGCCATTTT+TGG | - | chr8_1:15280367-15280386 | None:intergenic | 40.0% |
| !!! | GTCAATTCCCATGCCATTTT+TGG | + | chr8_1:15280367-15280386 | Msa1181020:intron | 40.0% |
| CTTTGCAGGGGCAAAAAAAA+AGG | + | chr8_1:15280449-15280468 | Msa1181020:intron | 40.0% | |
| TTATTCGTCCCTGCAAATAG+GGG | - | chr8_1:15280507-15280526 | None:intergenic | 40.0% | |
| GTTATTCGTCCCTGCAAATA+GGG | - | chr8_1:15280508-15280527 | None:intergenic | 40.0% | |
| TGTTATTCGTCCCTGCAAAT+AGG | - | chr8_1:15280509-15280528 | None:intergenic | 40.0% | |
| !!! | TTGAACTTTTTTGCAGGTGC+TGG | + | chr8_1:15280858-15280877 | Msa1181020:intron | 40.0% |
| !!! | TGAACTTTTTTGCAGGTGCT+GGG | + | chr8_1:15280859-15280878 | Msa1181020:intron | 40.0% |
| TTGTGGTATGCATGAAGATG+TGG | + | chr8_1:15280885-15280904 | Msa1181020:CDS | 40.0% | |
| TGATTGAGGAGATTGAAGTG+GGG | + | chr8_1:15280914-15280933 | Msa1181020:CDS | 40.0% | |
| TACGAAGAGGAGAGAATTGT+TGG | + | chr8_1:15280999-15281018 | Msa1181020:CDS | 40.0% | |
| ! | AGAGGAGAGAATTGTTGGTT+AGG | + | chr8_1:15281004-15281023 | Msa1181020:CDS | 40.0% |
| ! | GAGGAGAGAATTGTTGGTTA+GGG | + | chr8_1:15281005-15281024 | Msa1181020:CDS | 40.0% |
| !!! | GTTTAAGGGTTTTGGTGATG+AGG | + | chr8_1:15281107-15281126 | Msa1181020:CDS | 40.0% |
| ! | AACCCAACACATTTTACCCA+CGG | + | chr8_1:15281214-15281233 | Msa1181020:three_prime_UTR | 40.0% |
| AACCGTGGGTAAAATGTGTT+GGG | - | chr8_1:15281219-15281238 | None:intergenic | 40.0% | |
| AAACCGTGGGTAAAATGTGT+TGG | - | chr8_1:15281220-15281239 | None:intergenic | 40.0% | |
| GTGAAGCACAACGATAACGA+AGG | - | chr8_1:15279495-15279514 | None:intergenic | 45.0% | |
| ! | GTTTGAGGAAAGTGGGGTTT+TGG | - | chr8_1:15279550-15279569 | None:intergenic | 45.0% |
| !!! | GTTTTGGGGATTGAGAATGG+TGG | - | chr8_1:15279577-15279596 | None:intergenic | 45.0% |
| !!! | AGGGTTTTGGGGATTGAGAA+TGG | - | chr8_1:15279580-15279599 | None:intergenic | 45.0% |
| AGTGTACTGGAATGTAGCTC+CGG | - | chr8_1:15279616-15279635 | None:intergenic | 45.0% | |
| AGCTACATTCCAGTACACTG+CGG | + | chr8_1:15279617-15279636 | Msa1181020:CDS | 45.0% | |
| AGGAATCGTCCTTTGATGAG+TGG | - | chr8_1:15279665-15279684 | None:intergenic | 45.0% | |
| ! | GGGTTTGAGTTTGGGTTTGT+GGG | - | chr8_1:15279742-15279761 | None:intergenic | 45.0% |
| ! | TGGGTTTGAGTTTGGGTTTG+TGG | - | chr8_1:15279743-15279762 | None:intergenic | 45.0% |
| !!! | GATTAAGCGGGTTAGGGTTT+TGG | - | chr8_1:15279774-15279793 | None:intergenic | 45.0% |
| ! | CGGATTTGATTAAGCGGGTT+AGG | - | chr8_1:15279781-15279800 | None:intergenic | 45.0% |
| ! | GCTCTTTTAGCGTAGCAACT+AGG | - | chr8_1:15279805-15279824 | None:intergenic | 45.0% |
| GATCAGCACCGTATTCAGAT+CGG | - | chr8_1:15279877-15279896 | None:intergenic | 45.0% | |
| TGTGATTCGTCCCTGCAAAT+AGG | + | chr8_1:15279974-15279993 | Msa1181020:intron | 45.0% | |
| GTGATTCGTCCCTGCAAATA+GGG | + | chr8_1:15279975-15279994 | Msa1181020:intron | 45.0% | |
| TGATTCGTCCCTGCAAATAG+GGG | + | chr8_1:15279976-15279995 | Msa1181020:intron | 45.0% | |
| TTAAGCGACCCCTATTTGCA+GGG | - | chr8_1:15280496-15280515 | None:intergenic | 45.0% | |
| TTTAAGCGACCCCTATTTGC+AGG | - | chr8_1:15280495-15280514 | None:intergenic | 45.0% | |
| GGAATTGACGAAAATACCCC+TGG | + | chr8_1:15280126-15280145 | Msa1181020:intron | 45.0% | |
| GGAATTGACGAAAATACCCC+TGG | - | chr8_1:15280126-15280145 | None:intergenic | 45.0% | |
| TGACGTGGCAGTGATTAACT+GGG | + | chr8_1:15280398-15280417 | Msa1181020:intron | 45.0% | |
| GCAGTGATTAACTGGGTCAA+AGG | + | chr8_1:15280405-15280424 | Msa1181020:intron | 45.0% | |
| TTTAAGCGACCCCTATTTGC+AGG | + | chr8_1:15280495-15280514 | Msa1181020:intron | 45.0% | |
| TTAAGCGACCCCTATTTGCA+GGG | + | chr8_1:15280496-15280515 | Msa1181020:intron | 45.0% | |
| !!! | GAACTTTTTTGCAGGTGCTG+GGG | + | chr8_1:15280860-15280879 | Msa1181020:intron | 45.0% |
| AGATGTGGACCGTTTGATTG+AGG | + | chr8_1:15280900-15280919 | Msa1181020:CDS | 45.0% | |
| GATTGAGGAGATTGAAGTGG+GGG | + | chr8_1:15280915-15280934 | Msa1181020:CDS | 45.0% | |
| ATTGAGGAGATTGAAGTGGG+GGG | + | chr8_1:15280916-15280935 | Msa1181020:CDS | 45.0% | |
| AGATGTTGAAAAGGAGTGGG+TGG | + | chr8_1:15281034-15281053 | Msa1181020:CDS | 45.0% | |
| GATGTTGAAAAGGAGTGGGT+GGG | + | chr8_1:15281035-15281054 | Msa1181020:CDS | 45.0% | |
| ATGTTGAAAAGGAGTGGGTG+GGG | + | chr8_1:15281036-15281055 | Msa1181020:CDS | 45.0% | |
| CTACACTGCAGAAAAACCGT+GGG | - | chr8_1:15281233-15281252 | None:intergenic | 45.0% | |
| TCTACACTGCAGAAAAACCG+TGG | - | chr8_1:15281234-15281253 | None:intergenic | 45.0% | |
| GTGAAGCACAACGATAACGA+AGG | - | chr8_1:15279495-15279514 | None:intergenic | 45.0% | |
| ! | GTTTGAGGAAAGTGGGGTTT+TGG | - | chr8_1:15279550-15279569 | None:intergenic | 45.0% |
| !!! | GTTTTGGGGATTGAGAATGG+TGG | - | chr8_1:15279577-15279596 | None:intergenic | 45.0% |
| !!! | AGGGTTTTGGGGATTGAGAA+TGG | - | chr8_1:15279580-15279599 | None:intergenic | 45.0% |
| AGTGTACTGGAATGTAGCTC+CGG | - | chr8_1:15279616-15279635 | None:intergenic | 45.0% | |
| AGCTACATTCCAGTACACTG+CGG | + | chr8_1:15279617-15279636 | Msa1181020:CDS | 45.0% | |
| AGGAATCGTCCTTTGATGAG+TGG | - | chr8_1:15279665-15279684 | None:intergenic | 45.0% | |
| ! | GGGTTTGAGTTTGGGTTTGT+GGG | - | chr8_1:15279742-15279761 | None:intergenic | 45.0% |
| ! | TGGGTTTGAGTTTGGGTTTG+TGG | - | chr8_1:15279743-15279762 | None:intergenic | 45.0% |
| !!! | GATTAAGCGGGTTAGGGTTT+TGG | - | chr8_1:15279774-15279793 | None:intergenic | 45.0% |
| ! | CGGATTTGATTAAGCGGGTT+AGG | - | chr8_1:15279781-15279800 | None:intergenic | 45.0% |
| ! | GCTCTTTTAGCGTAGCAACT+AGG | - | chr8_1:15279805-15279824 | None:intergenic | 45.0% |
| GATCAGCACCGTATTCAGAT+CGG | - | chr8_1:15279877-15279896 | None:intergenic | 45.0% | |
| TGTGATTCGTCCCTGCAAAT+AGG | + | chr8_1:15279974-15279993 | Msa1181020:intron | 45.0% | |
| GTGATTCGTCCCTGCAAATA+GGG | + | chr8_1:15279975-15279994 | Msa1181020:intron | 45.0% | |
| TGATTCGTCCCTGCAAATAG+GGG | + | chr8_1:15279976-15279995 | Msa1181020:intron | 45.0% | |
| TTAAGCGACCCCTATTTGCA+GGG | - | chr8_1:15280496-15280515 | None:intergenic | 45.0% | |
| TTTAAGCGACCCCTATTTGC+AGG | - | chr8_1:15280495-15280514 | None:intergenic | 45.0% | |
| GGAATTGACGAAAATACCCC+TGG | + | chr8_1:15280126-15280145 | Msa1181020:intron | 45.0% | |
| GGAATTGACGAAAATACCCC+TGG | - | chr8_1:15280126-15280145 | None:intergenic | 45.0% | |
| TGACGTGGCAGTGATTAACT+GGG | + | chr8_1:15280398-15280417 | Msa1181020:intron | 45.0% | |
| GCAGTGATTAACTGGGTCAA+AGG | + | chr8_1:15280405-15280424 | Msa1181020:intron | 45.0% | |
| TTTAAGCGACCCCTATTTGC+AGG | + | chr8_1:15280495-15280514 | Msa1181020:intron | 45.0% | |
| TTAAGCGACCCCTATTTGCA+GGG | + | chr8_1:15280496-15280515 | Msa1181020:intron | 45.0% | |
| !!! | GAACTTTTTTGCAGGTGCTG+GGG | + | chr8_1:15280860-15280879 | Msa1181020:intron | 45.0% |
| AGATGTGGACCGTTTGATTG+AGG | + | chr8_1:15280900-15280919 | Msa1181020:CDS | 45.0% | |
| GATTGAGGAGATTGAAGTGG+GGG | + | chr8_1:15280915-15280934 | Msa1181020:CDS | 45.0% | |
| ATTGAGGAGATTGAAGTGGG+GGG | + | chr8_1:15280916-15280935 | Msa1181020:CDS | 45.0% | |
| AGATGTTGAAAAGGAGTGGG+TGG | + | chr8_1:15281034-15281053 | Msa1181020:CDS | 45.0% | |
| GATGTTGAAAAGGAGTGGGT+GGG | + | chr8_1:15281035-15281054 | Msa1181020:CDS | 45.0% | |
| ATGTTGAAAAGGAGTGGGTG+GGG | + | chr8_1:15281036-15281055 | Msa1181020:CDS | 45.0% | |
| CTACACTGCAGAAAAACCGT+GGG | - | chr8_1:15281233-15281252 | None:intergenic | 45.0% | |
| TCTACACTGCAGAAAAACCG+TGG | - | chr8_1:15281234-15281253 | None:intergenic | 45.0% | |
| !! | AAAAAATTTCAAAATTTATA+AGG | - | chr8_1:15280164-15280183 | None:intergenic | 5.0% |
| !! | TTAAAAATCATAAAAAATTT+CGG | + | chr8_1:15280214-15280233 | Msa1181020:intron | 5.0% |
| !! | AAAAAATTTCAAAATTTATA+AGG | - | chr8_1:15280164-15280183 | None:intergenic | 5.0% |
| !! | TTAAAAATCATAAAAAATTT+CGG | + | chr8_1:15280214-15280233 | Msa1181020:intron | 5.0% |
| !! | TGAGGAAAGTGGGGTTTTGG+TGG | - | chr8_1:15279547-15279566 | None:intergenic | 50.0% |
| TGGTGGGGTTTGAGGAAAGT+GGG | - | chr8_1:15279557-15279576 | None:intergenic | 50.0% | |
| TGGGGATTGAGAATGGTGGT+GGG | - | chr8_1:15279573-15279592 | None:intergenic | 50.0% | |
| TTGGGGATTGAGAATGGTGG+TGG | - | chr8_1:15279574-15279593 | None:intergenic | 50.0% | |
| ! | TGTGGTGGTTGAGGGTTTTG+GGG | - | chr8_1:15279591-15279610 | None:intergenic | 50.0% |
| ! | GTGTGGTGGTTGAGGGTTTT+GGG | - | chr8_1:15279592-15279611 | None:intergenic | 50.0% |
| TACATTCCAGTACACTGCGG+CGG | + | chr8_1:15279620-15279639 | Msa1181020:CDS | 50.0% | |
| TTTGATGAGTGGTCCACGCT+GGG | - | chr8_1:15279654-15279673 | None:intergenic | 50.0% | |
| TGAGAAGACACGAAGTGCGA+GGG | - | chr8_1:15279849-15279868 | None:intergenic | 50.0% | |
| TCAGCCGTCCGATCTGAATA+CGG | + | chr8_1:15279866-15279885 | Msa1181020:CDS | 50.0% | |
| AGCACCGTATTCAGATCGGA+CGG | - | chr8_1:15279873-15279892 | None:intergenic | 50.0% | |
| CTGACGTGGCAGTGATTAAC+TGG | + | chr8_1:15280397-15280416 | Msa1181020:intron | 50.0% | |
| GGTGTGATGAGGATCCGAAA+GGG | + | chr8_1:15280947-15280966 | Msa1181020:CDS | 50.0% | |
| GTGTGATGAGGATCCGAAAG+GGG | + | chr8_1:15280948-15280967 | Msa1181020:CDS | 50.0% | |
| AAGCGGTTGTTGGTACGAAG+AGG | + | chr8_1:15280986-15281005 | Msa1181020:CDS | 50.0% | |
| TGTTGAAAAGGAGTGGGTGG+GGG | + | chr8_1:15281037-15281056 | Msa1181020:CDS | 50.0% | |
| !! | TGAGGAAAGTGGGGTTTTGG+TGG | - | chr8_1:15279547-15279566 | None:intergenic | 50.0% |
| TGGTGGGGTTTGAGGAAAGT+GGG | - | chr8_1:15279557-15279576 | None:intergenic | 50.0% | |
| TGGGGATTGAGAATGGTGGT+GGG | - | chr8_1:15279573-15279592 | None:intergenic | 50.0% | |
| TTGGGGATTGAGAATGGTGG+TGG | - | chr8_1:15279574-15279593 | None:intergenic | 50.0% | |
| ! | TGTGGTGGTTGAGGGTTTTG+GGG | - | chr8_1:15279591-15279610 | None:intergenic | 50.0% |
| ! | GTGTGGTGGTTGAGGGTTTT+GGG | - | chr8_1:15279592-15279611 | None:intergenic | 50.0% |
| TACATTCCAGTACACTGCGG+CGG | + | chr8_1:15279620-15279639 | Msa1181020:CDS | 50.0% | |
| TTTGATGAGTGGTCCACGCT+GGG | - | chr8_1:15279654-15279673 | None:intergenic | 50.0% | |
| TGAGAAGACACGAAGTGCGA+GGG | - | chr8_1:15279849-15279868 | None:intergenic | 50.0% | |
| TCAGCCGTCCGATCTGAATA+CGG | + | chr8_1:15279866-15279885 | Msa1181020:CDS | 50.0% | |
| AGCACCGTATTCAGATCGGA+CGG | - | chr8_1:15279873-15279892 | None:intergenic | 50.0% | |
| CTGACGTGGCAGTGATTAAC+TGG | + | chr8_1:15280397-15280416 | Msa1181020:intron | 50.0% | |
| GGTGTGATGAGGATCCGAAA+GGG | + | chr8_1:15280947-15280966 | Msa1181020:CDS | 50.0% | |
| GTGTGATGAGGATCCGAAAG+GGG | + | chr8_1:15280948-15280967 | Msa1181020:CDS | 50.0% | |
| AAGCGGTTGTTGGTACGAAG+AGG | + | chr8_1:15280986-15281005 | Msa1181020:CDS | 50.0% | |
| TGTTGAAAAGGAGTGGGTGG+GGG | + | chr8_1:15281037-15281056 | Msa1181020:CDS | 50.0% | |
| GGTGGGGTTTGAGGAAAGTG+GGG | - | chr8_1:15279556-15279575 | None:intergenic | 55.0% | |
| ! | GTGGTGGGGTTTGAGGAAAG+TGG | - | chr8_1:15279558-15279577 | None:intergenic | 55.0% |
| !! | GAGAATGGTGGTGGGGTTTG+AGG | - | chr8_1:15279565-15279584 | None:intergenic | 55.0% |
| ! | GGGGATTGAGAATGGTGGTG+GGG | - | chr8_1:15279572-15279591 | None:intergenic | 55.0% |
| ! | CGTGTGGTGGTTGAGGGTTT+TGG | - | chr8_1:15279593-15279612 | None:intergenic | 55.0% |
| CTTTGATGAGTGGTCCACGC+TGG | - | chr8_1:15279655-15279674 | None:intergenic | 55.0% | |
| CAGCGTGGACCACTCATCAA+AGG | + | chr8_1:15279653-15279672 | Msa1181020:CDS | 55.0% | |
| !! | CGAGGGTGGGTTGTTCTTGA+CGG | - | chr8_1:15279832-15279851 | None:intergenic | 55.0% |
| AAGACACGAAGTGCGAGGGT+GGG | - | chr8_1:15279845-15279864 | None:intergenic | 55.0% | |
| CTGAGAAGACACGAAGTGCG+AGG | - | chr8_1:15279850-15279869 | None:intergenic | 55.0% | |
| !! | TTGCAGGTGCTGGGGAATTG+TGG | + | chr8_1:15280868-15280887 | Msa1181020:intron | 55.0% |
| AGGAGATTGAAGTGGGGGGT+GGG | + | chr8_1:15280920-15280939 | Msa1181020:CDS | 55.0% | |
| ATTGAAGTGGGGGGTGGGAT+TGG | + | chr8_1:15280925-15280944 | Msa1181020:CDS | 55.0% | |
| TTGAAGTGGGGGGTGGGATT+GGG | + | chr8_1:15280926-15280945 | Msa1181020:CDS | 55.0% | |
| GGGTGTGATGAGGATCCGAA+AGG | + | chr8_1:15280946-15280965 | Msa1181020:CDS | 55.0% | |
| GTTGAAAAGGAGTGGGTGGG+GGG | + | chr8_1:15281038-15281057 | Msa1181020:CDS | 55.0% | |
| GGTGGGGTTTGAGGAAAGTG+GGG | - | chr8_1:15279556-15279575 | None:intergenic | 55.0% | |
| ! | GTGGTGGGGTTTGAGGAAAG+TGG | - | chr8_1:15279558-15279577 | None:intergenic | 55.0% |
| !! | GAGAATGGTGGTGGGGTTTG+AGG | - | chr8_1:15279565-15279584 | None:intergenic | 55.0% |
| ! | GGGGATTGAGAATGGTGGTG+GGG | - | chr8_1:15279572-15279591 | None:intergenic | 55.0% |
| ! | CGTGTGGTGGTTGAGGGTTT+TGG | - | chr8_1:15279593-15279612 | None:intergenic | 55.0% |
| CTTTGATGAGTGGTCCACGC+TGG | - | chr8_1:15279655-15279674 | None:intergenic | 55.0% | |
| CAGCGTGGACCACTCATCAA+AGG | + | chr8_1:15279653-15279672 | Msa1181020:CDS | 55.0% | |
| !! | CGAGGGTGGGTTGTTCTTGA+CGG | - | chr8_1:15279832-15279851 | None:intergenic | 55.0% |
| AAGACACGAAGTGCGAGGGT+GGG | - | chr8_1:15279845-15279864 | None:intergenic | 55.0% | |
| CTGAGAAGACACGAAGTGCG+AGG | - | chr8_1:15279850-15279869 | None:intergenic | 55.0% | |
| !! | TTGCAGGTGCTGGGGAATTG+TGG | + | chr8_1:15280868-15280887 | Msa1181020:intron | 55.0% |
| AGGAGATTGAAGTGGGGGGT+GGG | + | chr8_1:15280920-15280939 | Msa1181020:CDS | 55.0% | |
| ATTGAAGTGGGGGGTGGGAT+TGG | + | chr8_1:15280925-15280944 | Msa1181020:CDS | 55.0% | |
| TTGAAGTGGGGGGTGGGATT+GGG | + | chr8_1:15280926-15280945 | Msa1181020:CDS | 55.0% | |
| GGGTGTGATGAGGATCCGAA+AGG | + | chr8_1:15280946-15280965 | Msa1181020:CDS | 55.0% | |
| GTTGAAAAGGAGTGGGTGGG+GGG | + | chr8_1:15281038-15281057 | Msa1181020:CDS | 55.0% | |
| AACCCTCAACCACCACACGC+CGG | + | chr8_1:15279594-15279613 | Msa1181020:CDS | 60.0% | |
| AATGTAGCTCCGGCGTGTGG+TGG | - | chr8_1:15279606-15279625 | None:intergenic | 60.0% | |
| TGGAATGTAGCTCCGGCGTG+TGG | - | chr8_1:15279609-15279628 | None:intergenic | 60.0% | |
| GAAGACACGAAGTGCGAGGG+TGG | - | chr8_1:15279846-15279865 | None:intergenic | 60.0% | |
| GAGGAGATTGAAGTGGGGGG+TGG | + | chr8_1:15280919-15280938 | Msa1181020:CDS | 60.0% | |
| GGGTGGGATTGGGTGTGATG+AGG | + | chr8_1:15280936-15280955 | Msa1181020:CDS | 60.0% | |
| AACCCTCAACCACCACACGC+CGG | + | chr8_1:15279594-15279613 | Msa1181020:CDS | 60.0% | |
| AATGTAGCTCCGGCGTGTGG+TGG | - | chr8_1:15279606-15279625 | None:intergenic | 60.0% | |
| TGGAATGTAGCTCCGGCGTG+TGG | - | chr8_1:15279609-15279628 | None:intergenic | 60.0% | |
| GAAGACACGAAGTGCGAGGG+TGG | - | chr8_1:15279846-15279865 | None:intergenic | 60.0% | |
| GAGGAGATTGAAGTGGGGGG+TGG | + | chr8_1:15280919-15280938 | Msa1181020:CDS | 60.0% | |
| GGGTGGGATTGGGTGTGATG+AGG | + | chr8_1:15280936-15280955 | Msa1181020:CDS | 60.0% | |
| CTCCGGCGTGTGGTGGTTGA+GGG | - | chr8_1:15279599-15279618 | None:intergenic | 65.0% | |
| AGTGGTCCACGCTGGGAACG+AGG | - | chr8_1:15279647-15279666 | None:intergenic | 65.0% | |
| GAAAAGGAGTGGGTGGGGGG+AGG | + | chr8_1:15281041-15281060 | Msa1181020:CDS | 65.0% | |
| CTCCGGCGTGTGGTGGTTGA+GGG | - | chr8_1:15279599-15279618 | None:intergenic | 65.0% | |
| AGTGGTCCACGCTGGGAACG+AGG | - | chr8_1:15279647-15279666 | None:intergenic | 65.0% | |
| GAAAAGGAGTGGGTGGGGGG+AGG | + | chr8_1:15281041-15281060 | Msa1181020:CDS | 65.0% | |
| GCTCCGGCGTGTGGTGGTTG+AGG | - | chr8_1:15279600-15279619 | None:intergenic | 70.0% | |
| CGAGGACCGCCGCAGTGTAC+TGG | - | chr8_1:15279629-15279648 | None:intergenic | 70.0% | |
| GCTCCGGCGTGTGGTGGTTG+AGG | - | chr8_1:15279600-15279619 | None:intergenic | 70.0% | |
| CGAGGACCGCCGCAGTGTAC+TGG | - | chr8_1:15279629-15279648 | None:intergenic | 70.0% | |
| GGCGGTCCTCGTTCCCAGCG+TGG | + | chr8_1:15279638-15279657 | Msa1181020:CDS | 75.0% | |
| GAGTGGGTGGGGGGAGGCTG+TGG | + | chr8_1:15281047-15281066 | Msa1181020:CDS | 75.0% | |
| GGCGGTCCTCGTTCCCAGCG+TGG | + | chr8_1:15279638-15279657 | Msa1181020:CDS | 75.0% | |
| GAGTGGGTGGGGGGAGGCTG+TGG | + | chr8_1:15281047-15281066 | Msa1181020:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 15279482 | 15281413 | 15279482 | ID=Msa1181020;Name=Msa1181020 |
| chr8_1 | mRNA | 15279482 | 15281413 | 15279482 | ID=Msa1181020-mRNA-1;Parent=Msa1181020;Name=Msa1181020-mRNA-1;_AED=0.00;_eAED=0.00;_QI=48|1|1|1|1|1|2|210|240 |
| chr8_1 | exon | 15279482 | 15279922 | 15279482 | ID=Msa1181020-mRNA-1:exon:5693;Parent=Msa1181020-mRNA-1 |
| chr8_1 | exon | 15280874 | 15281413 | 15280874 | ID=Msa1181020-mRNA-1:exon:5694;Parent=Msa1181020-mRNA-1 |
| chr8_1 | five_prime_UTR | 15279482 | 15279529 | 15279482 | ID=Msa1181020-mRNA-1:five_prime_utr;Parent=Msa1181020-mRNA-1 |
| chr8_1 | CDS | 15279530 | 15279922 | 15279530 | ID=Msa1181020-mRNA-1:cds;Parent=Msa1181020-mRNA-1 |
| chr8_1 | CDS | 15280874 | 15281203 | 15280874 | ID=Msa1181020-mRNA-1:cds;Parent=Msa1181020-mRNA-1 |
| chr8_1 | three_prime_UTR | 15281204 | 15281413 | 15281204 | ID=Msa1181020-mRNA-1:three_prime_utr;Parent=Msa1181020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
