AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1126310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126310 MtrunA17_Chr7g0267161 95.570 158 7 0 1 158 1 158 1.65e-110 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126310 AT2G33180.1 76.344 93 22 0 66 158 74 166 1.54e-48 154

Find 102 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGAACATTTAATAAATT+AGG 0.202937 7_3:-77857035 Msa1126310:three_prime_UTR
AGATTACTCGGTTAGGATTA+AGG 0.234751 7_3:-77856909 Msa1126310:three_prime_UTR
GGTGATTTGGGCAACGGTAT+AGG 0.256823 7_3:-77856738 Msa1126310:three_prime_UTR
GTGATTTGGGCAACGGTATA+GGG 0.304559 7_3:-77856737 Msa1126310:three_prime_UTR
AACTCTTGCTATAGAAATTC+AGG 0.324340 7_3:-77858766 Msa1126310:five_prime_UTR
ACCAACACTTGTATCAATTA+AGG 0.328965 7_3:+77856800 None:intergenic
AGGAAACAACAACTCTTAAA+AGG 0.348485 7_3:+77857414 None:intergenic
GATAGTCCTGAGAATTTCTA+AGG 0.364684 7_3:-77858148 Msa1126310:intron
GATAAGGTGACTTGGTGATT+TGG 0.366081 7_3:-77856751 Msa1126310:three_prime_UTR
CCTTCTCAATTTGAGAAGCT+TGG 0.375168 7_3:-77857327 Msa1126310:three_prime_UTR
ACTGAAAGAGATGCTGATAA+AGG 0.378200 7_3:+77858548 None:intergenic
TTTGAGATAATTAGCAAGTC+TGG 0.379651 7_3:+77858337 None:intergenic
TTAGCTTGAAGGGTCGGTTT+TGG 0.381453 7_3:-77858382 Msa1126310:CDS
TCCCCTTCACACTGATTATG+AGG 0.382972 7_3:-77856877 Msa1126310:three_prime_UTR
TCCTATTCCCAACACTCCTT+TGG 0.383151 7_3:-77858809 Msa1126310:five_prime_UTR
AACACAGTGACAGTGCCTTC+TGG 0.384818 7_3:+77858705 None:intergenic
AGAAAATAGACACTGATATA+TGG 0.389534 7_3:+77856970 None:intergenic
GGAGTGTTGGGAATAGGATA+TGG 0.395725 7_3:+77858814 None:intergenic
TGGTCACCAGTTTCATATCT+AGG 0.397018 7_3:+77856990 None:intergenic
ATAAGGTGACTTGGTGATTT+GGG 0.397109 7_3:-77856750 Msa1126310:three_prime_UTR
TTGTTTAGTTGAGTGCTTAC+GGG 0.399777 7_3:-77858854 Msa1126310:five_prime_UTR
CAATTTGAGAAGCTTGGATA+AGG 0.399848 7_3:-77857321 Msa1126310:three_prime_UTR
GTTGGTATCATTTGATCAAA+AGG 0.400167 7_3:-77856783 Msa1126310:three_prime_UTR
ACACAGTGACAGTGCCTTCT+GGG 0.412469 7_3:+77858706 None:intergenic
AATAAATTAGGTGATAGTTT+CGG 0.421880 7_3:-77857023 Msa1126310:three_prime_UTR
AGCTCAACCAAAGGAGTGTT+GGG 0.428366 7_3:+77858802 None:intergenic
TTTGTTTAGTTGAGTGCTTA+CGG 0.430500 7_3:-77858855 Msa1126310:five_prime_UTR
CATCTGAGAGTATGTTATCA+TGG 0.431521 7_3:-77857137 Msa1126310:three_prime_UTR
ATCTTTCCTAGATATGAAAC+TGG 0.432788 7_3:-77856996 Msa1126310:three_prime_UTR
AATTTGAGAAGCTTGGATAA+GGG 0.433338 7_3:-77857320 Msa1126310:three_prime_UTR
AAACCGACCCTTCAAGCTAA+TGG 0.437576 7_3:+77858385 None:intergenic
AGGTTGTTGTGTAGAGTAAC+TGG 0.440719 7_3:+77858655 None:intergenic
GACACTTCTGTTGGTATGAC+AGG 0.448505 7_3:-77858446 Msa1126310:CDS
ACCAAAGGAGTGTTGGGAAT+AGG 0.450556 7_3:+77858808 None:intergenic
CAGATCTTTGACACTTCTGT+TGG 0.451786 7_3:-77858455 Msa1126310:CDS
ATAATATCGAATAGATGTAT+TGG 0.455322 7_3:+77857586 None:intergenic
TAATTGAGCATGTGGGTGTT+GGG 0.455367 7_3:+77858620 None:intergenic
GTATAGGGGTTGGAGTGATA+AGG 0.457284 7_3:-77856722 Msa1126310:three_prime_UTR
AGACAACGTAAGACAGGCTT+TGG 0.458074 7_3:-77858501 Msa1126310:CDS
ATGTCTGAATGAGGCGTTGA+AGG 0.463820 7_3:-77857743 Msa1126310:three_prime_UTR
ATTTAATATGCAAACTCAAA+AGG 0.468764 7_3:-77857500 Msa1126310:three_prime_UTR
TGGGTGTTGGGTGTCATGAA+TGG 0.469938 7_3:+77858632 None:intergenic
GTCGATGCTCGAGGTGAGCT+TGG 0.475623 7_3:-77858479 Msa1126310:CDS
ATAGTACCTTAGAAATTCTC+AGG 0.476842 7_3:+77858142 None:intergenic
TTACGTGACCATTAGCTTGA+AGG 0.478261 7_3:-77858393 Msa1126310:CDS
TTGGGCAACGGTATAGGGGT+TGG 0.479857 7_3:-77856732 Msa1126310:three_prime_UTR
CAGCTCAACCAAAGGAGTGT+TGG 0.486097 7_3:+77858801 None:intergenic
TTCCTCGACTATGCAGTCTC+TGG 0.487924 7_3:-77857396 Msa1126310:three_prime_UTR
CTTCACACTGATTATGAGGT+TGG 0.493016 7_3:-77856873 Msa1126310:three_prime_UTR
TCCTTAATTGATACAAGTGT+TGG 0.503146 7_3:-77856801 Msa1126310:three_prime_UTR
TATGAGGTTGGTAGTCCCCT+TGG 0.506289 7_3:-77856861 Msa1126310:three_prime_UTR
ATAATTGAGCATGTGGGTGT+TGG 0.510622 7_3:+77858619 None:intergenic
AGCTGAGAGATTACTCGGTT+AGG 0.510807 7_3:-77856916 Msa1126310:three_prime_UTR
CCAAGCTTCTCAAATTGAGA+AGG 0.518775 7_3:+77857327 None:intergenic
ATATAGCAAGTGCAGATTGA+AGG 0.526037 7_3:-77858742 Msa1126310:five_prime_UTR
GTGTTGGGTGTCATGAATGG+AGG 0.530393 7_3:+77858635 None:intergenic
TGTAGTTGAACTGGTGGAGT+TGG 0.530566 7_3:-77858423 Msa1126310:CDS
ATTTGAGAAGCTTGGATAAG+GGG 0.534463 7_3:-77857319 Msa1126310:three_prime_UTR
GTCACGTCACTAATCAAACT+TGG 0.536699 7_3:+77857701 None:intergenic
TATGACAGGTGTAGTTGAAC+TGG 0.539229 7_3:-77858432 Msa1126310:CDS
TATCATTTGATCAAAAGGCT+AGG 0.544344 7_3:-77856778 Msa1126310:three_prime_UTR
CACAGAAGACAACGTAAGAC+AGG 0.550536 7_3:-77858507 Msa1126310:CDS
ATCATTTGATCAAAAGGCTA+GGG 0.553771 7_3:-77856777 Msa1126310:three_prime_UTR
CAAAAGGCTAGGGAGTGATA+AGG 0.553860 7_3:-77856767 Msa1126310:three_prime_UTR
TGACTTGGTGATTTGGGCAA+CGG 0.561343 7_3:-77856744 Msa1126310:three_prime_UTR
ATGAAAACAACTTTGCCGCT+AGG 0.563348 7_3:-77857609 Msa1126310:three_prime_UTR
TACGTGACCATTAGCTTGAA+GGG 0.566065 7_3:-77858392 Msa1126310:CDS
CTTGTTGTACTCATGAGAAG+TGG 0.569532 7_3:+77858596 None:intergenic
GATGAAGCTGAGAGATTACT+CGG 0.571310 7_3:-77856921 Msa1126310:three_prime_UTR
TGACCATTAGCTTGAAGGGT+CGG 0.573287 7_3:-77858388 Msa1126310:CDS
TGGTAGAGAACTTCTTCCAA+GGG 0.573616 7_3:+77856845 None:intergenic
AACCTCATAATCAGTGTGAA+GGG 0.575517 7_3:+77856875 None:intergenic
TTGTCTTCTGTGAGGTCAAG+TGG 0.576356 7_3:+77858518 None:intergenic
TGTTATCATGGAAACATCAC+AGG 0.578970 7_3:-77857125 Msa1126310:three_prime_UTR
ATGGTAGAGAACTTCTTCCA+AGG 0.581069 7_3:+77856844 None:intergenic
ATTACAAAAGCGGCGCAACA+TGG 0.584720 7_3:-77857656 Msa1126310:three_prime_UTR
CAACCTCATAATCAGTGTGA+AGG 0.587681 7_3:+77856874 None:intergenic
TGTTGTGTAGAGTAACTGGT+AGG 0.593892 7_3:+77858659 None:intergenic
TTCAAGCTAATGGTCACGTA+AGG 0.597217 7_3:+77858395 None:intergenic
TGATTTGGGCAACGGTATAG+GGG 0.599868 7_3:-77856736 Msa1126310:three_prime_UTR
GATAATTAGCAAGTCTGGCA+AGG 0.601106 7_3:+77858342 None:intergenic
TAGGGAGTGATAAGGTGACT+TGG 0.608066 7_3:-77856759 Msa1126310:three_prime_UTR
GTTGAACTGGTGGAGTTGGA+TGG 0.610128 7_3:-77858419 Msa1126310:CDS
AAGACTAGAATGTCTGAATG+AGG 0.614322 7_3:-77857752 Msa1126310:intron
ACCTCATAATCAGTGTGAAG+GGG 0.631211 7_3:+77856876 None:intergenic
GAGCATGTCTCTATCCCAGA+AGG 0.636939 7_3:-77858720 Msa1126310:exon
ACACGAAACAGCTCAACCAA+AGG 0.637467 7_3:+77858793 None:intergenic
CAGGCTTTGGTCGATGCTCG+AGG 0.637657 7_3:-77858488 Msa1126310:CDS
CACTTCTCATGAGTACAACA+AGG 0.638760 7_3:-77858595 Msa1126310:CDS
GTCTTACGTTGTCTTCTGTG+AGG 0.639028 7_3:+77858510 None:intergenic
GACAGGTGTAGTTGAACTGG+TGG 0.640631 7_3:-77858429 Msa1126310:CDS
CAACAAGGTGTATACTGCGA+AGG 0.641582 7_3:-77858580 Msa1126310:CDS
TACCAGAGACTGCATAGTCG+AGG 0.649684 7_3:+77857394 None:intergenic
TAAGAAGCTTGAAGCATCAG+TGG 0.650396 7_3:+77857240 None:intergenic
GAATAGATGTATTGGCCTAG+CGG 0.650539 7_3:+77857594 None:intergenic
GAAGTGGATAATTGAGCATG+TGG 0.651338 7_3:+77858612 None:intergenic
GTTGTGTAGAGTAACTGGTA+GGG 0.670609 7_3:+77858660 None:intergenic
GTGTAGAGTAACTGGTAGGG+TGG 0.682532 7_3:+77858663 None:intergenic
AAGGCGTTGAAATGTTAATG+TGG 0.690314 7_3:-77857724 Msa1126310:three_prime_UTR
TCTTCTGTGAGGTCAAGTGG+CGG 0.692555 7_3:+77858521 None:intergenic
AAGTGGATAATTGAGCATGT+GGG 0.695100 7_3:+77858613 None:intergenic
GGTAGAGAACTTCTTCCAAG+GGG 0.722944 7_3:+77856846 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTGTTTTATTTTTTTT+AGG - chr7_3:77857490-77857509 Msa1126310:three_prime_UTR 10.0%
!!! GTTTTTGTTTTATTTTTTTT+AGG - chr7_3:77857490-77857509 Msa1126310:three_prime_UTR 10.0%
!! TCAAAAAAGAAATCTAAATT+TGG - chr7_3:77857719-77857738 Msa1126310:three_prime_UTR 15.0%
!! CAAAAAAAATTAATGCATAT+AGG + chr7_3:77857810-77857829 None:intergenic 15.0%
!! TTGTGAACATTTAATAAATT+AGG - chr7_3:77858549-77858568 Msa1126310:CDS 15.0%
!! TCAAAAAAGAAATCTAAATT+TGG - chr7_3:77857719-77857738 Msa1126310:three_prime_UTR 15.0%
!! CAAAAAAAATTAATGCATAT+AGG + chr7_3:77857810-77857829 None:intergenic 15.0%
!! TTGTGAACATTTAATAAATT+AGG - chr7_3:77858549-77858568 Msa1126310:CDS 15.0%
!!! CTTGTTTACTTTTTATGTTT+TGG - chr7_3:77857365-77857384 Msa1126310:three_prime_UTR 20.0%
!! ATAAAACAAAAACCAAATAG+TGG + chr7_3:77857483-77857502 None:intergenic 20.0%
!! ACAGTTAATATTGATACATA+AGG + chr7_3:77857643-77857662 None:intergenic 20.0%
!! TTATGTATCAATATTAACTG+TGG - chr7_3:77857642-77857661 Msa1126310:three_prime_UTR 20.0%
!!! GCTTTTAAAAATTACAAAAG+CGG - chr7_3:77857918-77857937 Msa1126310:intron 20.0%
!! ATAATATCGAATAGATGTAT+TGG + chr7_3:77858001-77858020 None:intergenic 20.0%
!! ATTTAATATGCAAACTCAAA+AGG - chr7_3:77858084-77858103 Msa1126310:intron 20.0%
!!! AATTGTTTTAATTAGCAGTT+AGG - chr7_3:77858129-77858148 Msa1126310:intron 20.0%
!! AATAAATTAGGTGATAGTTT+CGG - chr7_3:77858561-77858580 Msa1126310:CDS 20.0%
!!! CTTGTTTACTTTTTATGTTT+TGG - chr7_3:77857365-77857384 Msa1126310:three_prime_UTR 20.0%
!! ATAAAACAAAAACCAAATAG+TGG + chr7_3:77857483-77857502 None:intergenic 20.0%
!! ACAGTTAATATTGATACATA+AGG + chr7_3:77857643-77857662 None:intergenic 20.0%
!! TTATGTATCAATATTAACTG+TGG - chr7_3:77857642-77857661 Msa1126310:three_prime_UTR 20.0%
!!! GCTTTTAAAAATTACAAAAG+CGG - chr7_3:77857918-77857937 Msa1126310:intron 20.0%
!! ATAATATCGAATAGATGTAT+TGG + chr7_3:77858001-77858020 None:intergenic 20.0%
!! ATTTAATATGCAAACTCAAA+AGG - chr7_3:77858084-77858103 Msa1126310:intron 20.0%
!!! AATTGTTTTAATTAGCAGTT+AGG - chr7_3:77858129-77858148 Msa1126310:intron 20.0%
!! AATAAATTAGGTGATAGTTT+CGG - chr7_3:77858561-77858580 Msa1126310:CDS 20.0%
!!! ACTTTTTATGTTTTGGTTTC+AGG - chr7_3:77857372-77857391 Msa1126310:three_prime_UTR 25.0%
! CATAGAAAACGAAAAACAAT+TGG - chr7_3:77857411-77857430 Msa1126310:three_prime_UTR 25.0%
! AGAAAATAGACACTGATATA+TGG + chr7_3:77858617-77858636 None:intergenic 25.0%
!!! ACTTTTTATGTTTTGGTTTC+AGG - chr7_3:77857372-77857391 Msa1126310:three_prime_UTR 25.0%
! CATAGAAAACGAAAAACAAT+TGG - chr7_3:77857411-77857430 Msa1126310:three_prime_UTR 25.0%
! AGAAAATAGACACTGATATA+TGG + chr7_3:77858617-77858636 None:intergenic 25.0%
TTTGTTTAGTTGAGTGCTTA+CGG - chr7_3:77856729-77856748 Msa1126310:three_prime_UTR 30.0%
! AACTCTTGCTATAGAAATTC+AGG - chr7_3:77856818-77856837 Msa1126310:three_prime_UTR 30.0%
! TTTGAGATAATTAGCAAGTC+TGG + chr7_3:77857250-77857269 None:intergenic 30.0%
!! GAAGTTTGCTTTTGCATTTT+GGG + chr7_3:77857333-77857352 None:intergenic 30.0%
!! TGAAGTTTGCTTTTGCATTT+TGG + chr7_3:77857334-77857353 None:intergenic 30.0%
ATAGTACCTTAGAAATTCTC+AGG + chr7_3:77857445-77857464 None:intergenic 30.0%
TGGATTCAATTCAAAAACAC+AGG - chr7_3:77857948-77857967 Msa1126310:intron 30.0%
GGATTCAATTCAAAAACACA+GGG - chr7_3:77857949-77857968 Msa1126310:intron 30.0%
AGGAAACAACAACTCTTAAA+AGG + chr7_3:77858173-77858192 None:intergenic 30.0%
AATTTGAGAAGCTTGGATAA+GGG - chr7_3:77858264-77858283 Msa1126310:intron 30.0%
ATCTTTCCTAGATATGAAAC+TGG - chr7_3:77858588-77858607 Msa1126310:CDS 30.0%
ACACAAGTACAAAAAGAAGA+TGG + chr7_3:77858762-77858781 None:intergenic 30.0%
TCCTTAATTGATACAAGTGT+TGG - chr7_3:77858783-77858802 Msa1126310:five_prime_UTR 30.0%
ACCAACACTTGTATCAATTA+AGG + chr7_3:77858787-77858806 None:intergenic 30.0%
GTTGGTATCATTTGATCAAA+AGG - chr7_3:77858801-77858820 Msa1126310:five_prime_UTR 30.0%
TATCATTTGATCAAAAGGCT+AGG - chr7_3:77858806-77858825 Msa1126310:five_prime_UTR 30.0%
ATCATTTGATCAAAAGGCTA+GGG - chr7_3:77858807-77858826 Msa1126310:five_prime_UTR 30.0%
TTTGTTTAGTTGAGTGCTTA+CGG - chr7_3:77856729-77856748 Msa1126310:three_prime_UTR 30.0%
! AACTCTTGCTATAGAAATTC+AGG - chr7_3:77856818-77856837 Msa1126310:three_prime_UTR 30.0%
! TTTGAGATAATTAGCAAGTC+TGG + chr7_3:77857250-77857269 None:intergenic 30.0%
!! GAAGTTTGCTTTTGCATTTT+GGG + chr7_3:77857333-77857352 None:intergenic 30.0%
!! TGAAGTTTGCTTTTGCATTT+TGG + chr7_3:77857334-77857353 None:intergenic 30.0%
ATAGTACCTTAGAAATTCTC+AGG + chr7_3:77857445-77857464 None:intergenic 30.0%
TGGATTCAATTCAAAAACAC+AGG - chr7_3:77857948-77857967 Msa1126310:intron 30.0%
GGATTCAATTCAAAAACACA+GGG - chr7_3:77857949-77857968 Msa1126310:intron 30.0%
AGGAAACAACAACTCTTAAA+AGG + chr7_3:77858173-77858192 None:intergenic 30.0%
AATTTGAGAAGCTTGGATAA+GGG - chr7_3:77858264-77858283 Msa1126310:intron 30.0%
ATCTTTCCTAGATATGAAAC+TGG - chr7_3:77858588-77858607 Msa1126310:CDS 30.0%
ACACAAGTACAAAAAGAAGA+TGG + chr7_3:77858762-77858781 None:intergenic 30.0%
TCCTTAATTGATACAAGTGT+TGG - chr7_3:77858783-77858802 Msa1126310:five_prime_UTR 30.0%
ACCAACACTTGTATCAATTA+AGG + chr7_3:77858787-77858806 None:intergenic 30.0%
GTTGGTATCATTTGATCAAA+AGG - chr7_3:77858801-77858820 Msa1126310:five_prime_UTR 30.0%
TATCATTTGATCAAAAGGCT+AGG - chr7_3:77858806-77858825 Msa1126310:five_prime_UTR 30.0%
ATCATTTGATCAAAAGGCTA+GGG - chr7_3:77858807-77858826 Msa1126310:five_prime_UTR 30.0%
TTGTTTAGTTGAGTGCTTAC+GGG - chr7_3:77856730-77856749 Msa1126310:three_prime_UTR 35.0%
ATATAGCAAGTGCAGATTGA+AGG - chr7_3:77856842-77856861 Msa1126310:three_prime_UTR 35.0%
AAGTGGATAATTGAGCATGT+GGG + chr7_3:77856974-77856993 None:intergenic 35.0%
ACTGAAAGAGATGCTGATAA+AGG + chr7_3:77857039-77857058 None:intergenic 35.0%
! TTGGTTTCAGGAGATTTTAG+AGG - chr7_3:77857384-77857403 Msa1126310:three_prime_UTR 35.0%
GATAGTCCTGAGAATTTCTA+AGG - chr7_3:77857436-77857455 Msa1126310:three_prime_UTR 35.0%
! CTAAGGTACTATATTACGCA+CGG - chr7_3:77857453-77857472 Msa1126310:three_prime_UTR 35.0%
AAGACTAGAATGTCTGAATG+AGG - chr7_3:77857832-77857851 Msa1126310:intron 35.0%
!! AAGGCGTTGAAATGTTAATG+TGG - chr7_3:77857860-77857879 Msa1126310:intron 35.0%
CAATTTGAGAAGCTTGGATA+AGG - chr7_3:77858263-77858282 Msa1126310:intron 35.0%
ATTTGAGAAGCTTGGATAAG+GGG - chr7_3:77858265-77858284 Msa1126310:intron 35.0%
! CATCTGAGAGTATGTTATCA+TGG - chr7_3:77858447-77858466 Msa1126310:CDS 35.0%
TGTTATCATGGAAACATCAC+AGG - chr7_3:77858459-77858478 Msa1126310:CDS 35.0%
AGATTACTCGGTTAGGATTA+AGG - chr7_3:77858675-77858694 Msa1126310:CDS 35.0%
AACCTCATAATCAGTGTGAA+GGG + chr7_3:77858712-77858731 None:intergenic 35.0%
!! ATAAGGTGACTTGGTGATTT+GGG - chr7_3:77858834-77858853 Msa1126310:five_prime_UTR 35.0%
TTGTTTAGTTGAGTGCTTAC+GGG - chr7_3:77856730-77856749 Msa1126310:three_prime_UTR 35.0%
ATATAGCAAGTGCAGATTGA+AGG - chr7_3:77856842-77856861 Msa1126310:three_prime_UTR 35.0%
AAGTGGATAATTGAGCATGT+GGG + chr7_3:77856974-77856993 None:intergenic 35.0%
ACTGAAAGAGATGCTGATAA+AGG + chr7_3:77857039-77857058 None:intergenic 35.0%
! TTGGTTTCAGGAGATTTTAG+AGG - chr7_3:77857384-77857403 Msa1126310:three_prime_UTR 35.0%
GATAGTCCTGAGAATTTCTA+AGG - chr7_3:77857436-77857455 Msa1126310:three_prime_UTR 35.0%
! CTAAGGTACTATATTACGCA+CGG - chr7_3:77857453-77857472 Msa1126310:three_prime_UTR 35.0%
AAGACTAGAATGTCTGAATG+AGG - chr7_3:77857832-77857851 Msa1126310:intron 35.0%
!! AAGGCGTTGAAATGTTAATG+TGG - chr7_3:77857860-77857879 Msa1126310:intron 35.0%
CAATTTGAGAAGCTTGGATA+AGG - chr7_3:77858263-77858282 Msa1126310:intron 35.0%
ATTTGAGAAGCTTGGATAAG+GGG - chr7_3:77858265-77858284 Msa1126310:intron 35.0%
! CATCTGAGAGTATGTTATCA+TGG - chr7_3:77858447-77858466 Msa1126310:CDS 35.0%
TGTTATCATGGAAACATCAC+AGG - chr7_3:77858459-77858478 Msa1126310:CDS 35.0%
AGATTACTCGGTTAGGATTA+AGG - chr7_3:77858675-77858694 Msa1126310:CDS 35.0%
AACCTCATAATCAGTGTGAA+GGG + chr7_3:77858712-77858731 None:intergenic 35.0%
!! ATAAGGTGACTTGGTGATTT+GGG - chr7_3:77858834-77858853 Msa1126310:five_prime_UTR 35.0%
GTTGTGTAGAGTAACTGGTA+GGG + chr7_3:77856927-77856946 None:intergenic 40.0%
TGTTGTGTAGAGTAACTGGT+AGG + chr7_3:77856928-77856947 None:intergenic 40.0%
AGGTTGTTGTGTAGAGTAAC+TGG + chr7_3:77856932-77856951 None:intergenic 40.0%
TAATTGAGCATGTGGGTGTT+GGG + chr7_3:77856967-77856986 None:intergenic 40.0%
ATAATTGAGCATGTGGGTGT+TGG + chr7_3:77856968-77856987 None:intergenic 40.0%
GAAGTGGATAATTGAGCATG+TGG + chr7_3:77856975-77856994 None:intergenic 40.0%
! CTTGTTGTACTCATGAGAAG+TGG + chr7_3:77856991-77857010 None:intergenic 40.0%
CACTTCTCATGAGTACAACA+AGG - chr7_3:77856989-77857008 Msa1126310:three_prime_UTR 40.0%
CAGATCTTTGACACTTCTGT+TGG - chr7_3:77857129-77857148 Msa1126310:three_prime_UTR 40.0%
TATGACAGGTGTAGTTGAAC+TGG - chr7_3:77857152-77857171 Msa1126310:three_prime_UTR 40.0%
TTCAAGCTAATGGTCACGTA+AGG + chr7_3:77857192-77857211 None:intergenic 40.0%
! TTACGTGACCATTAGCTTGA+AGG - chr7_3:77857191-77857210 Msa1126310:three_prime_UTR 40.0%
! TACGTGACCATTAGCTTGAA+GGG - chr7_3:77857192-77857211 Msa1126310:three_prime_UTR 40.0%
GATAATTAGCAAGTCTGGCA+AGG + chr7_3:77857245-77857264 None:intergenic 40.0%
! AAAGAAGCACAAGAGAGAAG+AGG + chr7_3:77857290-77857309 None:intergenic 40.0%
GTCACGTCACTAATCAAACT+TGG + chr7_3:77857886-77857905 None:intergenic 40.0%
ATGAAAACAACTTTGCCGCT+AGG - chr7_3:77857975-77857994 Msa1126310:intron 40.0%
! GAATAGATGTATTGGCCTAG+CGG + chr7_3:77857993-77858012 None:intergenic 40.0%
CCAAGCTTCTCAAATTGAGA+AGG + chr7_3:77858260-77858279 None:intergenic 40.0%
CCTTCTCAATTTGAGAAGCT+TGG - chr7_3:77858257-77858276 Msa1126310:intron 40.0%
! TAAGAAGCTTGAAGCATCAG+TGG + chr7_3:77858347-77858366 None:intergenic 40.0%
TGGTCACCAGTTTCATATCT+AGG + chr7_3:77858597-77858616 None:intergenic 40.0%
GATGAAGCTGAGAGATTACT+CGG - chr7_3:77858663-77858682 Msa1126310:CDS 40.0%
ACCTCATAATCAGTGTGAAG+GGG + chr7_3:77858711-77858730 None:intergenic 40.0%
CAACCTCATAATCAGTGTGA+AGG + chr7_3:77858713-77858732 None:intergenic 40.0%
! CTTCACACTGATTATGAGGT+TGG - chr7_3:77858711-77858730 Msa1126310:CDS 40.0%
TGGTAGAGAACTTCTTCCAA+GGG + chr7_3:77858742-77858761 None:intergenic 40.0%
ATGGTAGAGAACTTCTTCCA+AGG + chr7_3:77858743-77858762 None:intergenic 40.0%
!! GATAAGGTGACTTGGTGATT+TGG - chr7_3:77858833-77858852 Msa1126310:five_prime_UTR 40.0%
GTTGTGTAGAGTAACTGGTA+GGG + chr7_3:77856927-77856946 None:intergenic 40.0%
TGTTGTGTAGAGTAACTGGT+AGG + chr7_3:77856928-77856947 None:intergenic 40.0%
AGGTTGTTGTGTAGAGTAAC+TGG + chr7_3:77856932-77856951 None:intergenic 40.0%
TAATTGAGCATGTGGGTGTT+GGG + chr7_3:77856967-77856986 None:intergenic 40.0%
ATAATTGAGCATGTGGGTGT+TGG + chr7_3:77856968-77856987 None:intergenic 40.0%
GAAGTGGATAATTGAGCATG+TGG + chr7_3:77856975-77856994 None:intergenic 40.0%
! CTTGTTGTACTCATGAGAAG+TGG + chr7_3:77856991-77857010 None:intergenic 40.0%
CACTTCTCATGAGTACAACA+AGG - chr7_3:77856989-77857008 Msa1126310:three_prime_UTR 40.0%
CAGATCTTTGACACTTCTGT+TGG - chr7_3:77857129-77857148 Msa1126310:three_prime_UTR 40.0%
TATGACAGGTGTAGTTGAAC+TGG - chr7_3:77857152-77857171 Msa1126310:three_prime_UTR 40.0%
TTCAAGCTAATGGTCACGTA+AGG + chr7_3:77857192-77857211 None:intergenic 40.0%
! TTACGTGACCATTAGCTTGA+AGG - chr7_3:77857191-77857210 Msa1126310:three_prime_UTR 40.0%
! TACGTGACCATTAGCTTGAA+GGG - chr7_3:77857192-77857211 Msa1126310:three_prime_UTR 40.0%
GATAATTAGCAAGTCTGGCA+AGG + chr7_3:77857245-77857264 None:intergenic 40.0%
! AAAGAAGCACAAGAGAGAAG+AGG + chr7_3:77857290-77857309 None:intergenic 40.0%
GTCACGTCACTAATCAAACT+TGG + chr7_3:77857886-77857905 None:intergenic 40.0%
ATGAAAACAACTTTGCCGCT+AGG - chr7_3:77857975-77857994 Msa1126310:intron 40.0%
! GAATAGATGTATTGGCCTAG+CGG + chr7_3:77857993-77858012 None:intergenic 40.0%
CCAAGCTTCTCAAATTGAGA+AGG + chr7_3:77858260-77858279 None:intergenic 40.0%
CCTTCTCAATTTGAGAAGCT+TGG - chr7_3:77858257-77858276 Msa1126310:intron 40.0%
! TAAGAAGCTTGAAGCATCAG+TGG + chr7_3:77858347-77858366 None:intergenic 40.0%
TGGTCACCAGTTTCATATCT+AGG + chr7_3:77858597-77858616 None:intergenic 40.0%
GATGAAGCTGAGAGATTACT+CGG - chr7_3:77858663-77858682 Msa1126310:CDS 40.0%
ACCTCATAATCAGTGTGAAG+GGG + chr7_3:77858711-77858730 None:intergenic 40.0%
CAACCTCATAATCAGTGTGA+AGG + chr7_3:77858713-77858732 None:intergenic 40.0%
! CTTCACACTGATTATGAGGT+TGG - chr7_3:77858711-77858730 Msa1126310:CDS 40.0%
TGGTAGAGAACTTCTTCCAA+GGG + chr7_3:77858742-77858761 None:intergenic 40.0%
ATGGTAGAGAACTTCTTCCA+AGG + chr7_3:77858743-77858762 None:intergenic 40.0%
!! GATAAGGTGACTTGGTGATT+TGG - chr7_3:77858833-77858852 Msa1126310:five_prime_UTR 40.0%
!! GGAGTGTTGGGAATAGGATA+TGG + chr7_3:77856773-77856792 None:intergenic 45.0%
TCCTATTCCCAACACTCCTT+TGG - chr7_3:77856775-77856794 Msa1126310:three_prime_UTR 45.0%
!! ACCAAAGGAGTGTTGGGAAT+AGG + chr7_3:77856779-77856798 None:intergenic 45.0%
!! AGCTCAACCAAAGGAGTGTT+GGG + chr7_3:77856785-77856804 None:intergenic 45.0%
ACACGAAACAGCTCAACCAA+AGG + chr7_3:77856794-77856813 None:intergenic 45.0%
CAACAAGGTGTATACTGCGA+AGG - chr7_3:77857004-77857023 Msa1126310:three_prime_UTR 45.0%
TTGTCTTCTGTGAGGTCAAG+TGG + chr7_3:77857069-77857088 None:intergenic 45.0%
GTCTTACGTTGTCTTCTGTG+AGG + chr7_3:77857077-77857096 None:intergenic 45.0%
CACAGAAGACAACGTAAGAC+AGG - chr7_3:77857077-77857096 Msa1126310:three_prime_UTR 45.0%
AGACAACGTAAGACAGGCTT+TGG - chr7_3:77857083-77857102 Msa1126310:three_prime_UTR 45.0%
GACACTTCTGTTGGTATGAC+AGG - chr7_3:77857138-77857157 Msa1126310:three_prime_UTR 45.0%
TGTAGTTGAACTGGTGGAGT+TGG - chr7_3:77857161-77857180 Msa1126310:three_prime_UTR 45.0%
! TGACCATTAGCTTGAAGGGT+CGG - chr7_3:77857196-77857215 Msa1126310:three_prime_UTR 45.0%
AAACCGACCCTTCAAGCTAA+TGG + chr7_3:77857202-77857221 None:intergenic 45.0%
!! TTAGCTTGAAGGGTCGGTTT+TGG - chr7_3:77857202-77857221 Msa1126310:three_prime_UTR 45.0%
ACAAGAGAGAAGAGGCTTAC+AGG + chr7_3:77857282-77857301 None:intergenic 45.0%
CACACCCTCAAATGCATACA+GGG + chr7_3:77857668-77857687 None:intergenic 45.0%
!! ATGTCTGAATGAGGCGTTGA+AGG - chr7_3:77857841-77857860 Msa1126310:intron 45.0%
ATTACAAAAGCGGCGCAACA+TGG - chr7_3:77857928-77857947 Msa1126310:intron 45.0%
AGCTGAGAGATTACTCGGTT+AGG - chr7_3:77858668-77858687 Msa1126310:CDS 45.0%
! TCCCCTTCACACTGATTATG+AGG - chr7_3:77858707-77858726 Msa1126310:CDS 45.0%
GGTAGAGAACTTCTTCCAAG+GGG + chr7_3:77858741-77858760 None:intergenic 45.0%
CAAAAGGCTAGGGAGTGATA+AGG - chr7_3:77858817-77858836 Msa1126310:five_prime_UTR 45.0%
TAGGGAGTGATAAGGTGACT+TGG - chr7_3:77858825-77858844 Msa1126310:five_prime_UTR 45.0%
!! TGACTTGGTGATTTGGGCAA+CGG - chr7_3:77858840-77858859 Msa1126310:five_prime_UTR 45.0%
! GTGATTTGGGCAACGGTATA+GGG - chr7_3:77858847-77858866 Msa1126310:five_prime_UTR 45.0%
! TGATTTGGGCAACGGTATAG+GGG - chr7_3:77858848-77858867 Msa1126310:five_prime_UTR 45.0%
GTATAGGGGTTGGAGTGATA+AGG - chr7_3:77858862-77858881 Msa1126310:five_prime_UTR 45.0%
!! GGAGTGTTGGGAATAGGATA+TGG + chr7_3:77856773-77856792 None:intergenic 45.0%
TCCTATTCCCAACACTCCTT+TGG - chr7_3:77856775-77856794 Msa1126310:three_prime_UTR 45.0%
!! ACCAAAGGAGTGTTGGGAAT+AGG + chr7_3:77856779-77856798 None:intergenic 45.0%
!! AGCTCAACCAAAGGAGTGTT+GGG + chr7_3:77856785-77856804 None:intergenic 45.0%
ACACGAAACAGCTCAACCAA+AGG + chr7_3:77856794-77856813 None:intergenic 45.0%
CAACAAGGTGTATACTGCGA+AGG - chr7_3:77857004-77857023 Msa1126310:three_prime_UTR 45.0%
TTGTCTTCTGTGAGGTCAAG+TGG + chr7_3:77857069-77857088 None:intergenic 45.0%
GTCTTACGTTGTCTTCTGTG+AGG + chr7_3:77857077-77857096 None:intergenic 45.0%
CACAGAAGACAACGTAAGAC+AGG - chr7_3:77857077-77857096 Msa1126310:three_prime_UTR 45.0%
AGACAACGTAAGACAGGCTT+TGG - chr7_3:77857083-77857102 Msa1126310:three_prime_UTR 45.0%
GACACTTCTGTTGGTATGAC+AGG - chr7_3:77857138-77857157 Msa1126310:three_prime_UTR 45.0%
TGTAGTTGAACTGGTGGAGT+TGG - chr7_3:77857161-77857180 Msa1126310:three_prime_UTR 45.0%
! TGACCATTAGCTTGAAGGGT+CGG - chr7_3:77857196-77857215 Msa1126310:three_prime_UTR 45.0%
AAACCGACCCTTCAAGCTAA+TGG + chr7_3:77857202-77857221 None:intergenic 45.0%
!! TTAGCTTGAAGGGTCGGTTT+TGG - chr7_3:77857202-77857221 Msa1126310:three_prime_UTR 45.0%
ACAAGAGAGAAGAGGCTTAC+AGG + chr7_3:77857282-77857301 None:intergenic 45.0%
CACACCCTCAAATGCATACA+GGG + chr7_3:77857668-77857687 None:intergenic 45.0%
!! ATGTCTGAATGAGGCGTTGA+AGG - chr7_3:77857841-77857860 Msa1126310:intron 45.0%
ATTACAAAAGCGGCGCAACA+TGG - chr7_3:77857928-77857947 Msa1126310:intron 45.0%
AGCTGAGAGATTACTCGGTT+AGG - chr7_3:77858668-77858687 Msa1126310:CDS 45.0%
! TCCCCTTCACACTGATTATG+AGG - chr7_3:77858707-77858726 Msa1126310:CDS 45.0%
GGTAGAGAACTTCTTCCAAG+GGG + chr7_3:77858741-77858760 None:intergenic 45.0%
CAAAAGGCTAGGGAGTGATA+AGG - chr7_3:77858817-77858836 Msa1126310:five_prime_UTR 45.0%
TAGGGAGTGATAAGGTGACT+TGG - chr7_3:77858825-77858844 Msa1126310:five_prime_UTR 45.0%
!! TGACTTGGTGATTTGGGCAA+CGG - chr7_3:77858840-77858859 Msa1126310:five_prime_UTR 45.0%
! GTGATTTGGGCAACGGTATA+GGG - chr7_3:77858847-77858866 Msa1126310:five_prime_UTR 45.0%
! TGATTTGGGCAACGGTATAG+GGG - chr7_3:77858848-77858867 Msa1126310:five_prime_UTR 45.0%
! CAGCTCAACCAAAGGAGTGT+TGG + chr7_3:77856786-77856805 None:intergenic 50.0%
GAGCATGTCTCTATCCCAGA+AGG - chr7_3:77856864-77856883 Msa1126310:three_prime_UTR 50.0%
ACACAGTGACAGTGCCTTCT+GGG + chr7_3:77856881-77856900 None:intergenic 50.0%
AACACAGTGACAGTGCCTTC+TGG + chr7_3:77856882-77856901 None:intergenic 50.0%
GTGTAGAGTAACTGGTAGGG+TGG + chr7_3:77856924-77856943 None:intergenic 50.0%
! GTGTTGGGTGTCATGAATGG+AGG + chr7_3:77856952-77856971 None:intergenic 50.0%
!! TGGGTGTTGGGTGTCATGAA+TGG + chr7_3:77856955-77856974 None:intergenic 50.0%
TCTTCTGTGAGGTCAAGTGG+CGG + chr7_3:77857066-77857085 None:intergenic 50.0%
GACAGGTGTAGTTGAACTGG+TGG - chr7_3:77857155-77857174 Msa1126310:three_prime_UTR 50.0%
GTTGAACTGGTGGAGTTGGA+TGG - chr7_3:77857165-77857184 Msa1126310:three_prime_UTR 50.0%
TGTGGCCCTGTATGCATTTG+AGG - chr7_3:77857660-77857679 Msa1126310:three_prime_UTR 50.0%
GTGGCCCTGTATGCATTTGA+GGG - chr7_3:77857661-77857680 Msa1126310:three_prime_UTR 50.0%
GCACACCCTCAAATGCATAC+AGG + chr7_3:77857669-77857688 None:intergenic 50.0%
TTCCTCGACTATGCAGTCTC+TGG - chr7_3:77858188-77858207 Msa1126310:CDS 50.0%
TACCAGAGACTGCATAGTCG+AGG + chr7_3:77858193-77858212 None:intergenic 50.0%
!! TATGAGGTTGGTAGTCCCCT+TGG - chr7_3:77858723-77858742 Msa1126310:exon 50.0%
! GGTGATTTGGGCAACGGTAT+AGG - chr7_3:77858846-77858865 Msa1126310:five_prime_UTR 50.0%
! CAGCTCAACCAAAGGAGTGT+TGG + chr7_3:77856786-77856805 None:intergenic 50.0%
GAGCATGTCTCTATCCCAGA+AGG - chr7_3:77856864-77856883 Msa1126310:three_prime_UTR 50.0%
ACACAGTGACAGTGCCTTCT+GGG + chr7_3:77856881-77856900 None:intergenic 50.0%
AACACAGTGACAGTGCCTTC+TGG + chr7_3:77856882-77856901 None:intergenic 50.0%
GTGTAGAGTAACTGGTAGGG+TGG + chr7_3:77856924-77856943 None:intergenic 50.0%
! GTGTTGGGTGTCATGAATGG+AGG + chr7_3:77856952-77856971 None:intergenic 50.0%
!! TGGGTGTTGGGTGTCATGAA+TGG + chr7_3:77856955-77856974 None:intergenic 50.0%
TCTTCTGTGAGGTCAAGTGG+CGG + chr7_3:77857066-77857085 None:intergenic 50.0%
GACAGGTGTAGTTGAACTGG+TGG - chr7_3:77857155-77857174 Msa1126310:three_prime_UTR 50.0%
GTTGAACTGGTGGAGTTGGA+TGG - chr7_3:77857165-77857184 Msa1126310:three_prime_UTR 50.0%
TGTGGCCCTGTATGCATTTG+AGG - chr7_3:77857660-77857679 Msa1126310:three_prime_UTR 50.0%
GTGGCCCTGTATGCATTTGA+GGG - chr7_3:77857661-77857680 Msa1126310:three_prime_UTR 50.0%
GCACACCCTCAAATGCATAC+AGG + chr7_3:77857669-77857688 None:intergenic 50.0%
TTCCTCGACTATGCAGTCTC+TGG - chr7_3:77858188-77858207 Msa1126310:CDS 50.0%
TACCAGAGACTGCATAGTCG+AGG + chr7_3:77858193-77858212 None:intergenic 50.0%
!! TATGAGGTTGGTAGTCCCCT+TGG - chr7_3:77858723-77858742 Msa1126310:exon 50.0%
! GGTGATTTGGGCAACGGTAT+AGG - chr7_3:77858846-77858865 Msa1126310:five_prime_UTR 50.0%
ACGCACGGCTTGCCACTATT+TGG - chr7_3:77857468-77857487 Msa1126310:three_prime_UTR 55.0%
TTGGGCAACGGTATAGGGGT+TGG - chr7_3:77858852-77858871 Msa1126310:five_prime_UTR 55.0%
ACGCACGGCTTGCCACTATT+TGG - chr7_3:77857468-77857487 Msa1126310:three_prime_UTR 55.0%
TTGGGCAACGGTATAGGGGT+TGG - chr7_3:77858852-77858871 Msa1126310:five_prime_UTR 55.0%
! CAGGCTTTGGTCGATGCTCG+AGG - chr7_3:77857096-77857115 Msa1126310:three_prime_UTR 60.0%
GTCGATGCTCGAGGTGAGCT+TGG - chr7_3:77857105-77857124 Msa1126310:three_prime_UTR 60.0%
! CAGGCTTTGGTCGATGCTCG+AGG - chr7_3:77857096-77857115 Msa1126310:three_prime_UTR 60.0%
GTCGATGCTCGAGGTGAGCT+TGG - chr7_3:77857105-77857124 Msa1126310:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 77856722 77858884 77856722 ID=Msa1126310;Name=Msa1126310
chr7_3 mRNA 77856722 77858884 77856722 ID=Msa1126310-mRNA-1;Parent=Msa1126310;Name=Msa1126310-mRNA-1;_AED=0.10;_eAED=0.10;_QI=146|1|1|1|0.5|0.33|3|1046|158
chr7_3 exon 77856722 77857766 77856722 ID=Msa1126310-mRNA-1:exon:21609;Parent=Msa1126310-mRNA-1
chr7_3 exon 77858149 77858212 77858149 ID=Msa1126310-mRNA-1:exon:21608;Parent=Msa1126310-mRNA-1
chr7_3 exon 77858325 77858884 77858325 ID=Msa1126310-mRNA-1:exon:21607;Parent=Msa1126310-mRNA-1
chr7_3 five_prime_UTR 77858739 77858884 77858739 ID=Msa1126310-mRNA-1:five_prime_utr;Parent=Msa1126310-mRNA-1
chr7_3 CDS 77858325 77858738 77858325 ID=Msa1126310-mRNA-1:cds;Parent=Msa1126310-mRNA-1
chr7_3 CDS 77858150 77858212 77858150 ID=Msa1126310-mRNA-1:cds;Parent=Msa1126310-mRNA-1
chr7_3 three_prime_UTR 77858149 77858149 77858149 ID=Msa1126310-mRNA-1:three_prime_utr;Parent=Msa1126310-mRNA-1
chr7_3 three_prime_UTR 77856722 77857766 77856722 ID=Msa1126310-mRNA-1:three_prime_utr;Parent=Msa1126310-mRNA-1
Gene Sequence

>Msa1126310

ATGTCTCTATCCCAGAAGGCACTGTCACTGTGTTGTAGCTCACTTAAACTATGCCACCCTACCAGTTACTCTACACAACAACCTCCATTCATGACACCCAACACCCACATGCTCAATTATCCACTTCTCATGAGTACAACAAGGTGTATACTGCGAAGGAAGTTGAAGCCTTTATCAGCATCTCTTTCAGTTGAACCGCCACTTGACCTCACAGAAGACAACGTAAGACAGGCTTTGGTCGATGCTCGAGGTGAGCTTGGTCAGATCTTTGACACTTCTGTTGGTATGACAGGTGTAGTTGAACTGGTGGAGTTGGATGGACCTTACGTGACCATTAGCTTGAAGGGTCGGTTTTGGCACAAACGTTCAACTGTCCTTGCCAGACTTGCTAATTATCTCAAACAGAGAATTCCTGAGATTTTAGAGGTTGACATAGAAAACGAAAAACAATTGGATGATAGTCCTGAGAATTTCTAA

Protein sequence

>Msa1126310

MSLSQKALSLCCSSLKLCHPTSYSTQQPPFMTPNTHMLNYPLLMSTTRCILRRKLKPLSASLSVEPPLDLTEDNVRQALVDARGELGQIFDTSVGMTGVVELVELDGPYVTISLKGRFWHKRSTVLARLANYLKQRIPEILEVDIENEKQLDDSPENF*