AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1167160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1167160 MtrunA17_Chr7g0267161 95.570 158 7 0 1 158 1 158 1.65e-110 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1167160 AT2G33180.1 76.344 93 22 0 66 158 74 166 1.54e-48 154

Find 101 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGAACATTTAATAAATT+AGG 0.202937 7_4:+59440471 Msa1167160:three_prime_UTR
GGTGATTTGGGCAACGGTAT+AGG 0.256823 7_4:+59440768 Msa1167160:three_prime_UTR
GTGATTTGGGCAACGGTATA+GGG 0.304559 7_4:+59440769 Msa1167160:three_prime_UTR
AACTCTTGCTATAGAAATTC+AGG 0.324340 7_4:+59438740 Msa1167160:five_prime_UTR
ACCAACACTTGTATCAATTA+AGG 0.328965 7_4:-59440706 None:intergenic
AGGAAACAACAACTCTTAAA+AGG 0.348485 7_4:-59440092 None:intergenic
GATAGTCCTGAGAATTTCTA+AGG 0.364684 7_4:+59439358 Msa1167160:CDS
GATAAGGTGACTTGGTGATT+TGG 0.366081 7_4:+59440755 Msa1167160:three_prime_UTR
CCTTCTCAATTTGAGAAGCT+TGG 0.375168 7_4:+59440179 Msa1167160:three_prime_UTR
ACTGAAAGAGATGCTGATAA+AGG 0.378200 7_4:-59438958 None:intergenic
TTTGAGATAATTAGCAAGTC+TGG 0.379651 7_4:-59439169 None:intergenic
TTAGCTTGAAGGGTCGGTTT+TGG 0.381453 7_4:+59439124 Msa1167160:CDS
TCCCCTTCACACTGATTATG+AGG 0.382972 7_4:+59440629 Msa1167160:three_prime_UTR
TCCTATTCCCAACACTCCTT+TGG 0.383151 7_4:+59438697 Msa1167160:five_prime_UTR
AACACAGTGACAGTGCCTTC+TGG 0.384818 7_4:-59438801 None:intergenic
AGAAAATAGACACTGATATA+TGG 0.389534 7_4:-59440536 None:intergenic
GGAGTGTTGGGAATAGGATA+TGG 0.395725 7_4:-59438692 None:intergenic
TGGTCACCAGTTTCATATCT+AGG 0.397018 7_4:-59440516 None:intergenic
ATAAGGTGACTTGGTGATTT+GGG 0.397109 7_4:+59440756 Msa1167160:three_prime_UTR
TTGTTTAGTTGAGTGCTTAC+GGG 0.399777 7_4:+59438652 Msa1167160:five_prime_UTR
CAATTTGAGAAGCTTGGATA+AGG 0.399848 7_4:+59440185 Msa1167160:three_prime_UTR
GTTGGTATCATTTGATCAAA+AGG 0.400167 7_4:+59440723 Msa1167160:three_prime_UTR
ACACAGTGACAGTGCCTTCT+GGG 0.412469 7_4:-59438800 None:intergenic
AATAAATTAGGTGATAGTTT+CGG 0.421880 7_4:+59440483 Msa1167160:three_prime_UTR
AGCTCAACCAAAGGAGTGTT+GGG 0.428366 7_4:-59438704 None:intergenic
TTTGTTTAGTTGAGTGCTTA+CGG 0.430500 7_4:+59438651 Msa1167160:five_prime_UTR
CATCTGAGAGTATGTTATCA+TGG 0.431521 7_4:+59440369 Msa1167160:three_prime_UTR
ATCTTTCCTAGATATGAAAC+TGG 0.432788 7_4:+59440510 Msa1167160:three_prime_UTR
AATTTGAGAAGCTTGGATAA+GGG 0.433338 7_4:+59440186 Msa1167160:three_prime_UTR
AAACCGACCCTTCAAGCTAA+TGG 0.437576 7_4:-59439121 None:intergenic
AGGTTGTTGTGTAGAGTAAC+TGG 0.440719 7_4:-59438851 None:intergenic
GACACTTCTGTTGGTATGAC+AGG 0.448505 7_4:+59439060 Msa1167160:CDS
ACCAAAGGAGTGTTGGGAAT+AGG 0.450556 7_4:-59438698 None:intergenic
CAGATCTTTGACACTTCTGT+TGG 0.451786 7_4:+59439051 Msa1167160:CDS
ATAATATCGAATAGATGTAT+TGG 0.455322 7_4:-59439920 None:intergenic
TAATTGAGCATGTGGGTGTT+GGG 0.455367 7_4:-59438886 None:intergenic
GTATAGGGGTTGGAGTGATA+AGG 0.457284 7_4:+59440784 Msa1167160:three_prime_UTR
AGACAACGTAAGACAGGCTT+TGG 0.458074 7_4:+59439005 Msa1167160:CDS
ATGTCTGAATGAGGCGTTGA+AGG 0.463820 7_4:+59439763 Msa1167160:three_prime_UTR
ATTTAATATGCAAACTCAAA+AGG 0.468764 7_4:+59440006 Msa1167160:three_prime_UTR
TGGGTGTTGGGTGTCATGAA+TGG 0.469938 7_4:-59438874 None:intergenic
GTCGATGCTCGAGGTGAGCT+TGG 0.475623 7_4:+59439027 Msa1167160:CDS
ATAGTACCTTAGAAATTCTC+AGG 0.476842 7_4:-59439364 None:intergenic
TTACGTGACCATTAGCTTGA+AGG 0.478261 7_4:+59439113 Msa1167160:CDS
TTGGGCAACGGTATAGGGGT+TGG 0.479857 7_4:+59440774 Msa1167160:three_prime_UTR
CAGCTCAACCAAAGGAGTGT+TGG 0.486097 7_4:-59438705 None:intergenic
TTCCTCGACTATGCAGTCTC+TGG 0.487924 7_4:+59440110 Msa1167160:three_prime_UTR
CTTCACACTGATTATGAGGT+TGG 0.493016 7_4:+59440633 Msa1167160:three_prime_UTR
TCCTTAATTGATACAAGTGT+TGG 0.503146 7_4:+59440705 Msa1167160:three_prime_UTR
TATGAGGTTGGTAGTCCCCT+TGG 0.506289 7_4:+59440645 Msa1167160:three_prime_UTR
ATAATTGAGCATGTGGGTGT+TGG 0.510622 7_4:-59438887 None:intergenic
AGCTGAGAGATTACTCGGTT+AGG 0.510807 7_4:+59440590 Msa1167160:three_prime_UTR
CCAAGCTTCTCAAATTGAGA+AGG 0.518775 7_4:-59440179 None:intergenic
ATATAGCAAGTGCAGATTGA+AGG 0.526037 7_4:+59438764 Msa1167160:five_prime_UTR
GTGTTGGGTGTCATGAATGG+AGG 0.530393 7_4:-59438871 None:intergenic
TGTAGTTGAACTGGTGGAGT+TGG 0.530566 7_4:+59439083 Msa1167160:CDS
ATTTGAGAAGCTTGGATAAG+GGG 0.534463 7_4:+59440187 Msa1167160:three_prime_UTR
GTCACGTCACTAATCAAACT+TGG 0.536699 7_4:-59439805 None:intergenic
TATGACAGGTGTAGTTGAAC+TGG 0.539229 7_4:+59439074 Msa1167160:CDS
TATCATTTGATCAAAAGGCT+AGG 0.544344 7_4:+59440728 Msa1167160:three_prime_UTR
CACAGAAGACAACGTAAGAC+AGG 0.550536 7_4:+59438999 Msa1167160:CDS
ATCATTTGATCAAAAGGCTA+GGG 0.553771 7_4:+59440729 Msa1167160:three_prime_UTR
CAAAAGGCTAGGGAGTGATA+AGG 0.553860 7_4:+59440739 Msa1167160:three_prime_UTR
TGACTTGGTGATTTGGGCAA+CGG 0.561343 7_4:+59440762 Msa1167160:three_prime_UTR
ATGAAAACAACTTTGCCGCT+AGG 0.563348 7_4:+59439897 Msa1167160:three_prime_UTR
TACGTGACCATTAGCTTGAA+GGG 0.566065 7_4:+59439114 Msa1167160:CDS
CTTGTTGTACTCATGAGAAG+TGG 0.569532 7_4:-59438910 None:intergenic
GATGAAGCTGAGAGATTACT+CGG 0.571310 7_4:+59440585 Msa1167160:three_prime_UTR
TGACCATTAGCTTGAAGGGT+CGG 0.573287 7_4:+59439118 Msa1167160:CDS
TGGTAGAGAACTTCTTCCAA+GGG 0.573616 7_4:-59440661 None:intergenic
AACCTCATAATCAGTGTGAA+GGG 0.575517 7_4:-59440631 None:intergenic
TTGTCTTCTGTGAGGTCAAG+TGG 0.576356 7_4:-59438988 None:intergenic
TGTTATCATGGAAACATCAC+AGG 0.578970 7_4:+59440381 Msa1167160:three_prime_UTR
ATGGTAGAGAACTTCTTCCA+AGG 0.581069 7_4:-59440662 None:intergenic
ATTACAAAAGCGGCGCAACA+TGG 0.584720 7_4:+59439850 Msa1167160:three_prime_UTR
CAACCTCATAATCAGTGTGA+AGG 0.587681 7_4:-59440632 None:intergenic
TGTTGTGTAGAGTAACTGGT+AGG 0.593892 7_4:-59438847 None:intergenic
TTCAAGCTAATGGTCACGTA+AGG 0.597217 7_4:-59439111 None:intergenic
TGATTTGGGCAACGGTATAG+GGG 0.599868 7_4:+59440770 Msa1167160:three_prime_UTR
GATAATTAGCAAGTCTGGCA+AGG 0.601106 7_4:-59439164 None:intergenic
TAGGGAGTGATAAGGTGACT+TGG 0.608066 7_4:+59440747 Msa1167160:three_prime_UTR
GTTGAACTGGTGGAGTTGGA+TGG 0.610128 7_4:+59439087 Msa1167160:CDS
AAGACTAGAATGTCTGAATG+AGG 0.614322 7_4:+59439754 Msa1167160:intron
ACCTCATAATCAGTGTGAAG+GGG 0.631211 7_4:-59440630 None:intergenic
GAGCATGTCTCTATCCCAGA+AGG 0.636939 7_4:+59438786 Msa1167160:exon
ACACGAAACAGCTCAACCAA+AGG 0.637467 7_4:-59438713 None:intergenic
CAGGCTTTGGTCGATGCTCG+AGG 0.637657 7_4:+59439018 Msa1167160:CDS
CACTTCTCATGAGTACAACA+AGG 0.638760 7_4:+59438911 Msa1167160:CDS
GTCTTACGTTGTCTTCTGTG+AGG 0.639028 7_4:-59438996 None:intergenic
GACAGGTGTAGTTGAACTGG+TGG 0.640631 7_4:+59439077 Msa1167160:CDS
CAACAAGGTGTATACTGCGA+AGG 0.641582 7_4:+59438926 Msa1167160:CDS
TACCAGAGACTGCATAGTCG+AGG 0.649684 7_4:-59440112 None:intergenic
TAAGAAGCTTGAAGCATCAG+TGG 0.650396 7_4:-59440266 None:intergenic
GAATAGATGTATTGGCCTAG+CGG 0.650539 7_4:-59439912 None:intergenic
GAAGTGGATAATTGAGCATG+TGG 0.651338 7_4:-59438894 None:intergenic
GTTGTGTAGAGTAACTGGTA+GGG 0.670609 7_4:-59438846 None:intergenic
GTGTAGAGTAACTGGTAGGG+TGG 0.682532 7_4:-59438843 None:intergenic
AAGGCGTTGAAATGTTAATG+TGG 0.690314 7_4:+59439782 Msa1167160:three_prime_UTR
TCTTCTGTGAGGTCAAGTGG+CGG 0.692555 7_4:-59438985 None:intergenic
AAGTGGATAATTGAGCATGT+GGG 0.695100 7_4:-59438893 None:intergenic
GGTAGAGAACTTCTTCCAAG+GGG 0.722944 7_4:-59440660 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTGTTTTATTTTTTTT+AGG + chr7_4:59439412-59439431 Msa1167160:intron 10.0%
!!! GTTTTTGTTTTATTTTTTTT+AGG + chr7_4:59439412-59439431 Msa1167160:intron 10.0%
!! TCAAAAAAGAAATCTAAATT+TGG + chr7_4:59439641-59439660 Msa1167160:intron 15.0%
!! CAAAAAAAATTAATGCATAT+AGG - chr7_4:59439732-59439751 None:intergenic 15.0%
!! TTGTGAACATTTAATAAATT+AGG + chr7_4:59440471-59440490 Msa1167160:three_prime_UTR 15.0%
!! TCAAAAAAGAAATCTAAATT+TGG + chr7_4:59439641-59439660 Msa1167160:intron 15.0%
!! CAAAAAAAATTAATGCATAT+AGG - chr7_4:59439732-59439751 None:intergenic 15.0%
!! TTGTGAACATTTAATAAATT+AGG + chr7_4:59440471-59440490 Msa1167160:three_prime_UTR 15.0%
!!! CTTGTTTACTTTTTATGTTT+TGG + chr7_4:59439287-59439306 Msa1167160:intron 20.0%
!! ATAAAACAAAAACCAAATAG+TGG - chr7_4:59439405-59439424 None:intergenic 20.0%
!! ACAGTTAATATTGATACATA+AGG - chr7_4:59439565-59439584 None:intergenic 20.0%
!! TTATGTATCAATATTAACTG+TGG + chr7_4:59439564-59439583 Msa1167160:intron 20.0%
!!! GCTTTTAAAAATTACAAAAG+CGG + chr7_4:59439840-59439859 Msa1167160:three_prime_UTR 20.0%
!! ATAATATCGAATAGATGTAT+TGG - chr7_4:59439923-59439942 None:intergenic 20.0%
!! ATTTAATATGCAAACTCAAA+AGG + chr7_4:59440006-59440025 Msa1167160:three_prime_UTR 20.0%
!!! AATTGTTTTAATTAGCAGTT+AGG + chr7_4:59440051-59440070 Msa1167160:three_prime_UTR 20.0%
!! AATAAATTAGGTGATAGTTT+CGG + chr7_4:59440483-59440502 Msa1167160:three_prime_UTR 20.0%
!!! CTTGTTTACTTTTTATGTTT+TGG + chr7_4:59439287-59439306 Msa1167160:intron 20.0%
!! ATAAAACAAAAACCAAATAG+TGG - chr7_4:59439405-59439424 None:intergenic 20.0%
!! ACAGTTAATATTGATACATA+AGG - chr7_4:59439565-59439584 None:intergenic 20.0%
!! TTATGTATCAATATTAACTG+TGG + chr7_4:59439564-59439583 Msa1167160:intron 20.0%
!!! GCTTTTAAAAATTACAAAAG+CGG + chr7_4:59439840-59439859 Msa1167160:three_prime_UTR 20.0%
!! ATAATATCGAATAGATGTAT+TGG - chr7_4:59439923-59439942 None:intergenic 20.0%
!! ATTTAATATGCAAACTCAAA+AGG + chr7_4:59440006-59440025 Msa1167160:three_prime_UTR 20.0%
!!! AATTGTTTTAATTAGCAGTT+AGG + chr7_4:59440051-59440070 Msa1167160:three_prime_UTR 20.0%
!! AATAAATTAGGTGATAGTTT+CGG + chr7_4:59440483-59440502 Msa1167160:three_prime_UTR 20.0%
!!! ACTTTTTATGTTTTGGTTTC+AGG + chr7_4:59439294-59439313 Msa1167160:intron 25.0%
! CATAGAAAACGAAAAACAAT+TGG + chr7_4:59439333-59439352 Msa1167160:CDS 25.0%
! AGAAAATAGACACTGATATA+TGG - chr7_4:59440539-59440558 None:intergenic 25.0%
!!! ACTTTTTATGTTTTGGTTTC+AGG + chr7_4:59439294-59439313 Msa1167160:intron 25.0%
! CATAGAAAACGAAAAACAAT+TGG + chr7_4:59439333-59439352 Msa1167160:CDS 25.0%
! AGAAAATAGACACTGATATA+TGG - chr7_4:59440539-59440558 None:intergenic 25.0%
TTTGTTTAGTTGAGTGCTTA+CGG + chr7_4:59438651-59438670 Msa1167160:five_prime_UTR 30.0%
! AACTCTTGCTATAGAAATTC+AGG + chr7_4:59438740-59438759 Msa1167160:five_prime_UTR 30.0%
! TTTGAGATAATTAGCAAGTC+TGG - chr7_4:59439172-59439191 None:intergenic 30.0%
!! GAAGTTTGCTTTTGCATTTT+GGG - chr7_4:59439255-59439274 None:intergenic 30.0%
!! TGAAGTTTGCTTTTGCATTT+TGG - chr7_4:59439256-59439275 None:intergenic 30.0%
ATAGTACCTTAGAAATTCTC+AGG - chr7_4:59439367-59439386 None:intergenic 30.0%
TGGATTCAATTCAAAAACAC+AGG + chr7_4:59439870-59439889 Msa1167160:three_prime_UTR 30.0%
GGATTCAATTCAAAAACACA+GGG + chr7_4:59439871-59439890 Msa1167160:three_prime_UTR 30.0%
AGGAAACAACAACTCTTAAA+AGG - chr7_4:59440095-59440114 None:intergenic 30.0%
AATTTGAGAAGCTTGGATAA+GGG + chr7_4:59440186-59440205 Msa1167160:three_prime_UTR 30.0%
ATCTTTCCTAGATATGAAAC+TGG + chr7_4:59440510-59440529 Msa1167160:three_prime_UTR 30.0%
ACACAAGTACAAAAAGAAGA+TGG - chr7_4:59440684-59440703 None:intergenic 30.0%
TCCTTAATTGATACAAGTGT+TGG + chr7_4:59440705-59440724 Msa1167160:three_prime_UTR 30.0%
ACCAACACTTGTATCAATTA+AGG - chr7_4:59440709-59440728 None:intergenic 30.0%
GTTGGTATCATTTGATCAAA+AGG + chr7_4:59440723-59440742 Msa1167160:three_prime_UTR 30.0%
TATCATTTGATCAAAAGGCT+AGG + chr7_4:59440728-59440747 Msa1167160:three_prime_UTR 30.0%
ATCATTTGATCAAAAGGCTA+GGG + chr7_4:59440729-59440748 Msa1167160:three_prime_UTR 30.0%
TTTGTTTAGTTGAGTGCTTA+CGG + chr7_4:59438651-59438670 Msa1167160:five_prime_UTR 30.0%
! AACTCTTGCTATAGAAATTC+AGG + chr7_4:59438740-59438759 Msa1167160:five_prime_UTR 30.0%
! TTTGAGATAATTAGCAAGTC+TGG - chr7_4:59439172-59439191 None:intergenic 30.0%
!! GAAGTTTGCTTTTGCATTTT+GGG - chr7_4:59439255-59439274 None:intergenic 30.0%
!! TGAAGTTTGCTTTTGCATTT+TGG - chr7_4:59439256-59439275 None:intergenic 30.0%
ATAGTACCTTAGAAATTCTC+AGG - chr7_4:59439367-59439386 None:intergenic 30.0%
TGGATTCAATTCAAAAACAC+AGG + chr7_4:59439870-59439889 Msa1167160:three_prime_UTR 30.0%
GGATTCAATTCAAAAACACA+GGG + chr7_4:59439871-59439890 Msa1167160:three_prime_UTR 30.0%
AGGAAACAACAACTCTTAAA+AGG - chr7_4:59440095-59440114 None:intergenic 30.0%
AATTTGAGAAGCTTGGATAA+GGG + chr7_4:59440186-59440205 Msa1167160:three_prime_UTR 30.0%
ATCTTTCCTAGATATGAAAC+TGG + chr7_4:59440510-59440529 Msa1167160:three_prime_UTR 30.0%
ACACAAGTACAAAAAGAAGA+TGG - chr7_4:59440684-59440703 None:intergenic 30.0%
TCCTTAATTGATACAAGTGT+TGG + chr7_4:59440705-59440724 Msa1167160:three_prime_UTR 30.0%
ACCAACACTTGTATCAATTA+AGG - chr7_4:59440709-59440728 None:intergenic 30.0%
GTTGGTATCATTTGATCAAA+AGG + chr7_4:59440723-59440742 Msa1167160:three_prime_UTR 30.0%
TATCATTTGATCAAAAGGCT+AGG + chr7_4:59440728-59440747 Msa1167160:three_prime_UTR 30.0%
ATCATTTGATCAAAAGGCTA+GGG + chr7_4:59440729-59440748 Msa1167160:three_prime_UTR 30.0%
TTGTTTAGTTGAGTGCTTAC+GGG + chr7_4:59438652-59438671 Msa1167160:five_prime_UTR 35.0%
ATATAGCAAGTGCAGATTGA+AGG + chr7_4:59438764-59438783 Msa1167160:five_prime_UTR 35.0%
AAGTGGATAATTGAGCATGT+GGG - chr7_4:59438896-59438915 None:intergenic 35.0%
ACTGAAAGAGATGCTGATAA+AGG - chr7_4:59438961-59438980 None:intergenic 35.0%
! AAAAAAGCACAAGAGAGAAG+AGG - chr7_4:59439212-59439231 None:intergenic 35.0%
! TTGGTTTCAGGAGATTTTAG+AGG + chr7_4:59439306-59439325 Msa1167160:intron 35.0%
GATAGTCCTGAGAATTTCTA+AGG + chr7_4:59439358-59439377 Msa1167160:CDS 35.0%
! CTAAGGTACTATATTACGCA+CGG + chr7_4:59439375-59439394 Msa1167160:intron 35.0%
AAGACTAGAATGTCTGAATG+AGG + chr7_4:59439754-59439773 Msa1167160:intron 35.0%
!! AAGGCGTTGAAATGTTAATG+TGG + chr7_4:59439782-59439801 Msa1167160:three_prime_UTR 35.0%
CAATTTGAGAAGCTTGGATA+AGG + chr7_4:59440185-59440204 Msa1167160:three_prime_UTR 35.0%
ATTTGAGAAGCTTGGATAAG+GGG + chr7_4:59440187-59440206 Msa1167160:three_prime_UTR 35.0%
! CATCTGAGAGTATGTTATCA+TGG + chr7_4:59440369-59440388 Msa1167160:three_prime_UTR 35.0%
TGTTATCATGGAAACATCAC+AGG + chr7_4:59440381-59440400 Msa1167160:three_prime_UTR 35.0%
AACCTCATAATCAGTGTGAA+GGG - chr7_4:59440634-59440653 None:intergenic 35.0%
!! ATAAGGTGACTTGGTGATTT+GGG + chr7_4:59440756-59440775 Msa1167160:three_prime_UTR 35.0%
TTGTTTAGTTGAGTGCTTAC+GGG + chr7_4:59438652-59438671 Msa1167160:five_prime_UTR 35.0%
ATATAGCAAGTGCAGATTGA+AGG + chr7_4:59438764-59438783 Msa1167160:five_prime_UTR 35.0%
AAGTGGATAATTGAGCATGT+GGG - chr7_4:59438896-59438915 None:intergenic 35.0%
ACTGAAAGAGATGCTGATAA+AGG - chr7_4:59438961-59438980 None:intergenic 35.0%
! AAAAAAGCACAAGAGAGAAG+AGG - chr7_4:59439212-59439231 None:intergenic 35.0%
! TTGGTTTCAGGAGATTTTAG+AGG + chr7_4:59439306-59439325 Msa1167160:intron 35.0%
GATAGTCCTGAGAATTTCTA+AGG + chr7_4:59439358-59439377 Msa1167160:CDS 35.0%
! CTAAGGTACTATATTACGCA+CGG + chr7_4:59439375-59439394 Msa1167160:intron 35.0%
AAGACTAGAATGTCTGAATG+AGG + chr7_4:59439754-59439773 Msa1167160:intron 35.0%
!! AAGGCGTTGAAATGTTAATG+TGG + chr7_4:59439782-59439801 Msa1167160:three_prime_UTR 35.0%
CAATTTGAGAAGCTTGGATA+AGG + chr7_4:59440185-59440204 Msa1167160:three_prime_UTR 35.0%
ATTTGAGAAGCTTGGATAAG+GGG + chr7_4:59440187-59440206 Msa1167160:three_prime_UTR 35.0%
! CATCTGAGAGTATGTTATCA+TGG + chr7_4:59440369-59440388 Msa1167160:three_prime_UTR 35.0%
TGTTATCATGGAAACATCAC+AGG + chr7_4:59440381-59440400 Msa1167160:three_prime_UTR 35.0%
AACCTCATAATCAGTGTGAA+GGG - chr7_4:59440634-59440653 None:intergenic 35.0%
!! ATAAGGTGACTTGGTGATTT+GGG + chr7_4:59440756-59440775 Msa1167160:three_prime_UTR 35.0%
GTTGTGTAGAGTAACTGGTA+GGG - chr7_4:59438849-59438868 None:intergenic 40.0%
TGTTGTGTAGAGTAACTGGT+AGG - chr7_4:59438850-59438869 None:intergenic 40.0%
AGGTTGTTGTGTAGAGTAAC+TGG - chr7_4:59438854-59438873 None:intergenic 40.0%
TAATTGAGCATGTGGGTGTT+GGG - chr7_4:59438889-59438908 None:intergenic 40.0%
ATAATTGAGCATGTGGGTGT+TGG - chr7_4:59438890-59438909 None:intergenic 40.0%
GAAGTGGATAATTGAGCATG+TGG - chr7_4:59438897-59438916 None:intergenic 40.0%
! CTTGTTGTACTCATGAGAAG+TGG - chr7_4:59438913-59438932 None:intergenic 40.0%
CACTTCTCATGAGTACAACA+AGG + chr7_4:59438911-59438930 Msa1167160:CDS 40.0%
CAGATCTTTGACACTTCTGT+TGG + chr7_4:59439051-59439070 Msa1167160:CDS 40.0%
TATGACAGGTGTAGTTGAAC+TGG + chr7_4:59439074-59439093 Msa1167160:CDS 40.0%
TTCAAGCTAATGGTCACGTA+AGG - chr7_4:59439114-59439133 None:intergenic 40.0%
! TTACGTGACCATTAGCTTGA+AGG + chr7_4:59439113-59439132 Msa1167160:CDS 40.0%
! TACGTGACCATTAGCTTGAA+GGG + chr7_4:59439114-59439133 Msa1167160:CDS 40.0%
GATAATTAGCAAGTCTGGCA+AGG - chr7_4:59439167-59439186 None:intergenic 40.0%
GTCACGTCACTAATCAAACT+TGG - chr7_4:59439808-59439827 None:intergenic 40.0%
ATGAAAACAACTTTGCCGCT+AGG + chr7_4:59439897-59439916 Msa1167160:three_prime_UTR 40.0%
! GAATAGATGTATTGGCCTAG+CGG - chr7_4:59439915-59439934 None:intergenic 40.0%
CCAAGCTTCTCAAATTGAGA+AGG - chr7_4:59440182-59440201 None:intergenic 40.0%
CCTTCTCAATTTGAGAAGCT+TGG + chr7_4:59440179-59440198 Msa1167160:three_prime_UTR 40.0%
! TAAGAAGCTTGAAGCATCAG+TGG - chr7_4:59440269-59440288 None:intergenic 40.0%
TGGTCACCAGTTTCATATCT+AGG - chr7_4:59440519-59440538 None:intergenic 40.0%
GATGAAGCTGAGAGATTACT+CGG + chr7_4:59440585-59440604 Msa1167160:three_prime_UTR 40.0%
ACCTCATAATCAGTGTGAAG+GGG - chr7_4:59440633-59440652 None:intergenic 40.0%
CAACCTCATAATCAGTGTGA+AGG - chr7_4:59440635-59440654 None:intergenic 40.0%
! CTTCACACTGATTATGAGGT+TGG + chr7_4:59440633-59440652 Msa1167160:three_prime_UTR 40.0%
TGGTAGAGAACTTCTTCCAA+GGG - chr7_4:59440664-59440683 None:intergenic 40.0%
ATGGTAGAGAACTTCTTCCA+AGG - chr7_4:59440665-59440684 None:intergenic 40.0%
!! GATAAGGTGACTTGGTGATT+TGG + chr7_4:59440755-59440774 Msa1167160:three_prime_UTR 40.0%
GTTGTGTAGAGTAACTGGTA+GGG - chr7_4:59438849-59438868 None:intergenic 40.0%
TGTTGTGTAGAGTAACTGGT+AGG - chr7_4:59438850-59438869 None:intergenic 40.0%
AGGTTGTTGTGTAGAGTAAC+TGG - chr7_4:59438854-59438873 None:intergenic 40.0%
TAATTGAGCATGTGGGTGTT+GGG - chr7_4:59438889-59438908 None:intergenic 40.0%
ATAATTGAGCATGTGGGTGT+TGG - chr7_4:59438890-59438909 None:intergenic 40.0%
GAAGTGGATAATTGAGCATG+TGG - chr7_4:59438897-59438916 None:intergenic 40.0%
! CTTGTTGTACTCATGAGAAG+TGG - chr7_4:59438913-59438932 None:intergenic 40.0%
CACTTCTCATGAGTACAACA+AGG + chr7_4:59438911-59438930 Msa1167160:CDS 40.0%
CAGATCTTTGACACTTCTGT+TGG + chr7_4:59439051-59439070 Msa1167160:CDS 40.0%
TATGACAGGTGTAGTTGAAC+TGG + chr7_4:59439074-59439093 Msa1167160:CDS 40.0%
TTCAAGCTAATGGTCACGTA+AGG - chr7_4:59439114-59439133 None:intergenic 40.0%
! TTACGTGACCATTAGCTTGA+AGG + chr7_4:59439113-59439132 Msa1167160:CDS 40.0%
! TACGTGACCATTAGCTTGAA+GGG + chr7_4:59439114-59439133 Msa1167160:CDS 40.0%
GATAATTAGCAAGTCTGGCA+AGG - chr7_4:59439167-59439186 None:intergenic 40.0%
GTCACGTCACTAATCAAACT+TGG - chr7_4:59439808-59439827 None:intergenic 40.0%
ATGAAAACAACTTTGCCGCT+AGG + chr7_4:59439897-59439916 Msa1167160:three_prime_UTR 40.0%
! GAATAGATGTATTGGCCTAG+CGG - chr7_4:59439915-59439934 None:intergenic 40.0%
CCAAGCTTCTCAAATTGAGA+AGG - chr7_4:59440182-59440201 None:intergenic 40.0%
CCTTCTCAATTTGAGAAGCT+TGG + chr7_4:59440179-59440198 Msa1167160:three_prime_UTR 40.0%
! TAAGAAGCTTGAAGCATCAG+TGG - chr7_4:59440269-59440288 None:intergenic 40.0%
TGGTCACCAGTTTCATATCT+AGG - chr7_4:59440519-59440538 None:intergenic 40.0%
GATGAAGCTGAGAGATTACT+CGG + chr7_4:59440585-59440604 Msa1167160:three_prime_UTR 40.0%
ACCTCATAATCAGTGTGAAG+GGG - chr7_4:59440633-59440652 None:intergenic 40.0%
CAACCTCATAATCAGTGTGA+AGG - chr7_4:59440635-59440654 None:intergenic 40.0%
! CTTCACACTGATTATGAGGT+TGG + chr7_4:59440633-59440652 Msa1167160:three_prime_UTR 40.0%
TGGTAGAGAACTTCTTCCAA+GGG - chr7_4:59440664-59440683 None:intergenic 40.0%
ATGGTAGAGAACTTCTTCCA+AGG - chr7_4:59440665-59440684 None:intergenic 40.0%
!! GATAAGGTGACTTGGTGATT+TGG + chr7_4:59440755-59440774 Msa1167160:three_prime_UTR 40.0%
!! GGAGTGTTGGGAATAGGATA+TGG - chr7_4:59438695-59438714 None:intergenic 45.0%
TCCTATTCCCAACACTCCTT+TGG + chr7_4:59438697-59438716 Msa1167160:five_prime_UTR 45.0%
!! ACCAAAGGAGTGTTGGGAAT+AGG - chr7_4:59438701-59438720 None:intergenic 45.0%
!! AGCTCAACCAAAGGAGTGTT+GGG - chr7_4:59438707-59438726 None:intergenic 45.0%
ACACGAAACAGCTCAACCAA+AGG - chr7_4:59438716-59438735 None:intergenic 45.0%
CAACAAGGTGTATACTGCGA+AGG + chr7_4:59438926-59438945 Msa1167160:CDS 45.0%
TTGTCTTCTGTGAGGTCAAG+TGG - chr7_4:59438991-59439010 None:intergenic 45.0%
GTCTTACGTTGTCTTCTGTG+AGG - chr7_4:59438999-59439018 None:intergenic 45.0%
CACAGAAGACAACGTAAGAC+AGG + chr7_4:59438999-59439018 Msa1167160:CDS 45.0%
AGACAACGTAAGACAGGCTT+TGG + chr7_4:59439005-59439024 Msa1167160:CDS 45.0%
GACACTTCTGTTGGTATGAC+AGG + chr7_4:59439060-59439079 Msa1167160:CDS 45.0%
TGTAGTTGAACTGGTGGAGT+TGG + chr7_4:59439083-59439102 Msa1167160:CDS 45.0%
! TGACCATTAGCTTGAAGGGT+CGG + chr7_4:59439118-59439137 Msa1167160:CDS 45.0%
AAACCGACCCTTCAAGCTAA+TGG - chr7_4:59439124-59439143 None:intergenic 45.0%
!! TTAGCTTGAAGGGTCGGTTT+TGG + chr7_4:59439124-59439143 Msa1167160:CDS 45.0%
ACAAGAGAGAAGAGGCTTAC+AGG - chr7_4:59439204-59439223 None:intergenic 45.0%
CACACCCTCAAATGCATACA+GGG - chr7_4:59439590-59439609 None:intergenic 45.0%
!! ATGTCTGAATGAGGCGTTGA+AGG + chr7_4:59439763-59439782 Msa1167160:three_prime_UTR 45.0%
ATTACAAAAGCGGCGCAACA+TGG + chr7_4:59439850-59439869 Msa1167160:three_prime_UTR 45.0%
AGCTGAGAGATTACTCGGTT+AGG + chr7_4:59440590-59440609 Msa1167160:three_prime_UTR 45.0%
! TCCCCTTCACACTGATTATG+AGG + chr7_4:59440629-59440648 Msa1167160:three_prime_UTR 45.0%
GGTAGAGAACTTCTTCCAAG+GGG - chr7_4:59440663-59440682 None:intergenic 45.0%
CAAAAGGCTAGGGAGTGATA+AGG + chr7_4:59440739-59440758 Msa1167160:three_prime_UTR 45.0%
TAGGGAGTGATAAGGTGACT+TGG + chr7_4:59440747-59440766 Msa1167160:three_prime_UTR 45.0%
!! TGACTTGGTGATTTGGGCAA+CGG + chr7_4:59440762-59440781 Msa1167160:three_prime_UTR 45.0%
! GTGATTTGGGCAACGGTATA+GGG + chr7_4:59440769-59440788 Msa1167160:three_prime_UTR 45.0%
! TGATTTGGGCAACGGTATAG+GGG + chr7_4:59440770-59440789 Msa1167160:three_prime_UTR 45.0%
GTATAGGGGTTGGAGTGATA+AGG + chr7_4:59440784-59440803 Msa1167160:three_prime_UTR 45.0%
!! GGAGTGTTGGGAATAGGATA+TGG - chr7_4:59438695-59438714 None:intergenic 45.0%
TCCTATTCCCAACACTCCTT+TGG + chr7_4:59438697-59438716 Msa1167160:five_prime_UTR 45.0%
!! ACCAAAGGAGTGTTGGGAAT+AGG - chr7_4:59438701-59438720 None:intergenic 45.0%
!! AGCTCAACCAAAGGAGTGTT+GGG - chr7_4:59438707-59438726 None:intergenic 45.0%
ACACGAAACAGCTCAACCAA+AGG - chr7_4:59438716-59438735 None:intergenic 45.0%
CAACAAGGTGTATACTGCGA+AGG + chr7_4:59438926-59438945 Msa1167160:CDS 45.0%
TTGTCTTCTGTGAGGTCAAG+TGG - chr7_4:59438991-59439010 None:intergenic 45.0%
GTCTTACGTTGTCTTCTGTG+AGG - chr7_4:59438999-59439018 None:intergenic 45.0%
CACAGAAGACAACGTAAGAC+AGG + chr7_4:59438999-59439018 Msa1167160:CDS 45.0%
AGACAACGTAAGACAGGCTT+TGG + chr7_4:59439005-59439024 Msa1167160:CDS 45.0%
GACACTTCTGTTGGTATGAC+AGG + chr7_4:59439060-59439079 Msa1167160:CDS 45.0%
TGTAGTTGAACTGGTGGAGT+TGG + chr7_4:59439083-59439102 Msa1167160:CDS 45.0%
! TGACCATTAGCTTGAAGGGT+CGG + chr7_4:59439118-59439137 Msa1167160:CDS 45.0%
AAACCGACCCTTCAAGCTAA+TGG - chr7_4:59439124-59439143 None:intergenic 45.0%
!! TTAGCTTGAAGGGTCGGTTT+TGG + chr7_4:59439124-59439143 Msa1167160:CDS 45.0%
ACAAGAGAGAAGAGGCTTAC+AGG - chr7_4:59439204-59439223 None:intergenic 45.0%
CACACCCTCAAATGCATACA+GGG - chr7_4:59439590-59439609 None:intergenic 45.0%
!! ATGTCTGAATGAGGCGTTGA+AGG + chr7_4:59439763-59439782 Msa1167160:three_prime_UTR 45.0%
ATTACAAAAGCGGCGCAACA+TGG + chr7_4:59439850-59439869 Msa1167160:three_prime_UTR 45.0%
AGCTGAGAGATTACTCGGTT+AGG + chr7_4:59440590-59440609 Msa1167160:three_prime_UTR 45.0%
! TCCCCTTCACACTGATTATG+AGG + chr7_4:59440629-59440648 Msa1167160:three_prime_UTR 45.0%
GGTAGAGAACTTCTTCCAAG+GGG - chr7_4:59440663-59440682 None:intergenic 45.0%
CAAAAGGCTAGGGAGTGATA+AGG + chr7_4:59440739-59440758 Msa1167160:three_prime_UTR 45.0%
TAGGGAGTGATAAGGTGACT+TGG + chr7_4:59440747-59440766 Msa1167160:three_prime_UTR 45.0%
!! TGACTTGGTGATTTGGGCAA+CGG + chr7_4:59440762-59440781 Msa1167160:three_prime_UTR 45.0%
! GTGATTTGGGCAACGGTATA+GGG + chr7_4:59440769-59440788 Msa1167160:three_prime_UTR 45.0%
! TGATTTGGGCAACGGTATAG+GGG + chr7_4:59440770-59440789 Msa1167160:three_prime_UTR 45.0%
! CAGCTCAACCAAAGGAGTGT+TGG - chr7_4:59438708-59438727 None:intergenic 50.0%
GAGCATGTCTCTATCCCAGA+AGG + chr7_4:59438786-59438805 Msa1167160:exon 50.0%
ACACAGTGACAGTGCCTTCT+GGG - chr7_4:59438803-59438822 None:intergenic 50.0%
AACACAGTGACAGTGCCTTC+TGG - chr7_4:59438804-59438823 None:intergenic 50.0%
GTGTAGAGTAACTGGTAGGG+TGG - chr7_4:59438846-59438865 None:intergenic 50.0%
! GTGTTGGGTGTCATGAATGG+AGG - chr7_4:59438874-59438893 None:intergenic 50.0%
!! TGGGTGTTGGGTGTCATGAA+TGG - chr7_4:59438877-59438896 None:intergenic 50.0%
TCTTCTGTGAGGTCAAGTGG+CGG - chr7_4:59438988-59439007 None:intergenic 50.0%
GACAGGTGTAGTTGAACTGG+TGG + chr7_4:59439077-59439096 Msa1167160:CDS 50.0%
GTTGAACTGGTGGAGTTGGA+TGG + chr7_4:59439087-59439106 Msa1167160:CDS 50.0%
TGTGGCCCTGTATGCATTTG+AGG + chr7_4:59439582-59439601 Msa1167160:intron 50.0%
GTGGCCCTGTATGCATTTGA+GGG + chr7_4:59439583-59439602 Msa1167160:intron 50.0%
GCACACCCTCAAATGCATAC+AGG - chr7_4:59439591-59439610 None:intergenic 50.0%
TTCCTCGACTATGCAGTCTC+TGG + chr7_4:59440110-59440129 Msa1167160:three_prime_UTR 50.0%
TACCAGAGACTGCATAGTCG+AGG - chr7_4:59440115-59440134 None:intergenic 50.0%
!! TATGAGGTTGGTAGTCCCCT+TGG + chr7_4:59440645-59440664 Msa1167160:three_prime_UTR 50.0%
! GGTGATTTGGGCAACGGTAT+AGG + chr7_4:59440768-59440787 Msa1167160:three_prime_UTR 50.0%
! CAGCTCAACCAAAGGAGTGT+TGG - chr7_4:59438708-59438727 None:intergenic 50.0%
GAGCATGTCTCTATCCCAGA+AGG + chr7_4:59438786-59438805 Msa1167160:exon 50.0%
ACACAGTGACAGTGCCTTCT+GGG - chr7_4:59438803-59438822 None:intergenic 50.0%
AACACAGTGACAGTGCCTTC+TGG - chr7_4:59438804-59438823 None:intergenic 50.0%
GTGTAGAGTAACTGGTAGGG+TGG - chr7_4:59438846-59438865 None:intergenic 50.0%
! GTGTTGGGTGTCATGAATGG+AGG - chr7_4:59438874-59438893 None:intergenic 50.0%
!! TGGGTGTTGGGTGTCATGAA+TGG - chr7_4:59438877-59438896 None:intergenic 50.0%
TCTTCTGTGAGGTCAAGTGG+CGG - chr7_4:59438988-59439007 None:intergenic 50.0%
GACAGGTGTAGTTGAACTGG+TGG + chr7_4:59439077-59439096 Msa1167160:CDS 50.0%
GTTGAACTGGTGGAGTTGGA+TGG + chr7_4:59439087-59439106 Msa1167160:CDS 50.0%
TGTGGCCCTGTATGCATTTG+AGG + chr7_4:59439582-59439601 Msa1167160:intron 50.0%
GTGGCCCTGTATGCATTTGA+GGG + chr7_4:59439583-59439602 Msa1167160:intron 50.0%
GCACACCCTCAAATGCATAC+AGG - chr7_4:59439591-59439610 None:intergenic 50.0%
TTCCTCGACTATGCAGTCTC+TGG + chr7_4:59440110-59440129 Msa1167160:three_prime_UTR 50.0%
TACCAGAGACTGCATAGTCG+AGG - chr7_4:59440115-59440134 None:intergenic 50.0%
!! TATGAGGTTGGTAGTCCCCT+TGG + chr7_4:59440645-59440664 Msa1167160:three_prime_UTR 50.0%
! GGTGATTTGGGCAACGGTAT+AGG + chr7_4:59440768-59440787 Msa1167160:three_prime_UTR 50.0%
ACGCACGGCTTGCCACTATT+TGG + chr7_4:59439390-59439409 Msa1167160:intron 55.0%
TTGGGCAACGGTATAGGGGT+TGG + chr7_4:59440774-59440793 Msa1167160:three_prime_UTR 55.0%
ACGCACGGCTTGCCACTATT+TGG + chr7_4:59439390-59439409 Msa1167160:intron 55.0%
TTGGGCAACGGTATAGGGGT+TGG + chr7_4:59440774-59440793 Msa1167160:three_prime_UTR 55.0%
! CAGGCTTTGGTCGATGCTCG+AGG + chr7_4:59439018-59439037 Msa1167160:CDS 60.0%
GTCGATGCTCGAGGTGAGCT+TGG + chr7_4:59439027-59439046 Msa1167160:CDS 60.0%
! CAGGCTTTGGTCGATGCTCG+AGG + chr7_4:59439018-59439037 Msa1167160:CDS 60.0%
GTCGATGCTCGAGGTGAGCT+TGG + chr7_4:59439027-59439046 Msa1167160:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 59438644 59440806 59438644 ID=Msa1167160;Name=Msa1167160
chr7_4 mRNA 59438644 59440806 59438644 ID=Msa1167160-mRNA-1;Parent=Msa1167160;Name=Msa1167160-mRNA-1;_AED=0.10;_eAED=0.10;_QI=146|1|1|1|0.5|0.33|3|1046|158
chr7_4 exon 59438644 59439203 59438644 ID=Msa1167160-mRNA-1:exon:18475;Parent=Msa1167160-mRNA-1
chr7_4 exon 59439316 59439379 59439316 ID=Msa1167160-mRNA-1:exon:18476;Parent=Msa1167160-mRNA-1
chr7_4 exon 59439762 59440806 59439762 ID=Msa1167160-mRNA-1:exon:18477;Parent=Msa1167160-mRNA-1
chr7_4 five_prime_UTR 59438644 59438789 59438644 ID=Msa1167160-mRNA-1:five_prime_utr;Parent=Msa1167160-mRNA-1
chr7_4 CDS 59438790 59439203 59438790 ID=Msa1167160-mRNA-1:cds;Parent=Msa1167160-mRNA-1
chr7_4 CDS 59439316 59439378 59439316 ID=Msa1167160-mRNA-1:cds;Parent=Msa1167160-mRNA-1
chr7_4 three_prime_UTR 59439379 59439379 59439379 ID=Msa1167160-mRNA-1:three_prime_utr;Parent=Msa1167160-mRNA-1
chr7_4 three_prime_UTR 59439762 59440806 59439762 ID=Msa1167160-mRNA-1:three_prime_utr;Parent=Msa1167160-mRNA-1
Gene Sequence

>Msa1167160

ATGTCTCTATCCCAGAAGGCACTGTCACTGTGTTGTAGCTCACTTAAACTATGCCACCCTACCAGTTACTCTACACAACAACCTCCATTCATGACACCCAACACCCACATGCTCAATTATCCACTTCTCATGAGTACAACAAGGTGTATACTGCGAAGGAAGTTGAAGCCTTTATCAGCATCTCTTTCAGTTGAACCGCCACTTGACCTCACAGAAGACAACGTAAGACAGGCTTTGGTCGATGCTCGAGGTGAGCTTGGTCAGATCTTTGACACTTCTGTTGGTATGACAGGTGTAGTTGAACTGGTGGAGTTGGATGGACCTTACGTGACCATTAGCTTGAAGGGTCGGTTTTGGCACAAACGTTCAACTGTCCTTGCCAGACTTGCTAATTATCTCAAACAGAGAATTCCTGAGATTTTAGAGGTTGACATAGAAAACGAAAAACAATTGGATGATAGTCCTGAGAATTTCTAA

Protein sequence

>Msa1167160

MSLSQKALSLCCSSLKLCHPTSYSTQQPPFMTPNTHMLNYPLLMSTTRCILRRKLKPLSASLSVEPPLDLTEDNVRQALVDARGELGQIFDTSVGMTGVVELVELDGPYVTISLKGRFWHKRSTVLARLANYLKQRIPEILEVDIENEKQLDDSPENF*