AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1013560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1013560 MtrunA17_Chr7g0225561 85.930 199 22 3 1 194 1 198 3.45e-95 275
Msa1013560 MtrunA17_Chr4g0057961 49.180 122 47 5 76 191 35 147 1.53e-25 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1013560 AT3G27160.1 45.729 199 82 4 1 191 1 181 4.94e-39 132
Msa1013560 AT3G27160.2 45.455 198 82 4 1 190 1 180 3.45e-38 131
Msa1013560 AT5G63300.1 39.496 119 62 4 76 191 66 177 7.27e-21 85.5
Msa1013560 AT5G63300.2 45.205 73 39 1 76 147 66 138 2.24e-15 72.0

Find 55 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTTCCTTCTTGGGTTT+TGG 0.117696 7_1:-20537333 None:intergenic
ATCATCATCCTCTTCCTTCT+TGG 0.209987 7_1:-20537340 None:intergenic
CTGAAGAGAGGTTGCTTAAT+AGG 0.214327 7_1:+20535540 Msa1013560:CDS
ACAATAACTTGAACATTATA+TGG 0.232267 7_1:-20535503 None:intergenic
TGAACTTGTTATTGCGGTTT+TGG 0.278601 7_1:-20535346 None:intergenic
TCATCATCCTCTTCCTTCTT+GGG 0.320409 7_1:-20537339 None:intergenic
AGGAAGAGGATGATGATAAC+TGG 0.330861 7_1:+20537346 Msa1013560:CDS
TTCAAGAGTGTAAGAGAAGA+AGG 0.348339 7_1:+20535594 Msa1013560:CDS
TTGATCTGCCCTCGATTCTC+TGG 0.349359 7_1:+20537588 Msa1013560:three_prime_UTR
AAATACAATAATTAAGTCTA+AGG 0.353871 7_1:-20537497 None:intergenic
ATCGGTAAATTCAACATCAT+AGG 0.380549 7_1:-20537661 None:intergenic
AAATTTAGTACATCCTCTTC+AGG 0.383834 7_1:-20537375 None:intergenic
TTTCAGGCGCCCTATGGGAG+GGG 0.395421 7_1:+20537266 Msa1013560:intron
CTATTAAGCAACCTCTCTTC+AGG 0.403889 7_1:-20535539 None:intergenic
AGTTGAGAGGGTGGTGGTTG+TGG 0.430525 7_1:-20535302 None:intergenic
TTCAGGCGCCCTATGGGAGG+GGG 0.460845 7_1:+20537267 Msa1013560:intron
GGAGAGAGAAGTTGAGAGGG+TGG 0.469049 7_1:-20535311 None:intergenic
TGAAGGGAATGAGAAGAAGT+TGG 0.474759 7_1:-20535264 None:intergenic
TCGGTAAATTCAACATCATA+GGG 0.478031 7_1:-20537660 None:intergenic
ATACACAGGATGAGAAGAAA+AGG 0.479200 7_1:+20535627 Msa1013560:CDS
CGTAGAGAGGTTATGAGAGC+TGG 0.485901 7_1:+20535566 Msa1013560:CDS
CTAAGCGTAATCGTAGGAAC+AGG 0.488387 7_1:+20535666 Msa1013560:CDS
GACATATCTTGTGGTGGTTG+TGG 0.492878 7_1:-20535440 None:intergenic
AATGGAGAGAGAAGTTGAGA+GGG 0.496545 7_1:-20535314 None:intergenic
TAGTTGTTGTACTGTCCTCT+TGG 0.497512 7_1:-20537297 None:intergenic
CTCGATTCTCTGGAGTCTTA+CGG 0.499913 7_1:+20537598 Msa1013560:three_prime_UTR
CATGTACTAGTTATATATCA+AGG 0.510960 7_1:+20537684 Msa1013560:three_prime_UTR
GCTTAATAGGTTTCGTAGAG+AGG 0.539971 7_1:+20535553 Msa1013560:CDS
TGAAAATAATGATAAGATTG+TGG 0.542365 7_1:-20535207 None:intergenic
ATCGTAGGAACAGGTTTCCT+AGG 0.543908 7_1:+20535675 Msa1013560:CDS
GAGGACAGTACAACAACTAC+AGG 0.547409 7_1:+20537301 Msa1013560:CDS
GAATGAGAAGAAGTTGGAGA+AGG 0.552897 7_1:-20535258 None:intergenic
GTTGAGAGAGCCATTGATGA+TGG 0.561571 7_1:-20535233 None:intergenic
AGATGATCCAAAACCCAAGA+AGG 0.568710 7_1:+20537326 Msa1013560:CDS
GAATGGAGAGAGAAGTTGAG+AGG 0.578830 7_1:-20535315 None:intergenic
TCAGGCGCCCTATGGGAGGG+GGG 0.579236 7_1:+20537268 Msa1013560:intron
ATATATAACTAGTACATGAT+CGG 0.585153 7_1:-20537679 None:intergenic
GAGAGGCTTTGTATGCATGT+AGG 0.588157 7_1:+20537447 Msa1013560:three_prime_UTR
GGAAGAGGATGATGATAACT+GGG 0.591765 7_1:+20537347 Msa1013560:CDS
TCATTGCGGCTTAGAACAAG+TGG 0.596369 7_1:-20535371 None:intergenic
GAGAGAAGTTGAGAGGGTGG+TGG 0.599741 7_1:-20535308 None:intergenic
TCCAAAACCCAAGAAGGAAG+AGG 0.600608 7_1:+20537332 Msa1013560:CDS
TAACTGGGATCTACCTGAAG+AGG 0.601353 7_1:+20537362 Msa1013560:CDS
TGATGTGATTGATGAAGAAG+AGG 0.609512 7_1:-20535396 None:intergenic
TTAACTTGATGCAAGAGGGG+AGG 0.613515 7_1:-20537634 None:intergenic
GTAAGACTCCAGAGAATCGA+GGG 0.632603 7_1:-20537596 None:intergenic
GTGGTATGAACTTGTTATTG+CGG 0.634244 7_1:-20535352 None:intergenic
CGTAAGACTCCAGAGAATCG+AGG 0.641656 7_1:-20537597 None:intergenic
CGGTAAATTCAACATCATAG+GGG 0.665540 7_1:-20537659 None:intergenic
CTTGAAGACATATCTTGTGG+TGG 0.675392 7_1:-20535446 None:intergenic
ATGCTGCTAAGCGTAATCGT+AGG 0.678424 7_1:+20535660 Msa1013560:CDS
AAGATGATGAGCCTGAAGAG+AGG 0.695325 7_1:+20535528 Msa1013560:CDS
AAACTTGAAGACATATCTTG+TGG 0.702615 7_1:-20535449 None:intergenic
ATGAAGAAGAGGTTTCATTG+CGG 0.708330 7_1:-20535385 None:intergenic
GAGAGAGCCATTGATGATGG+TGG 0.732173 7_1:-20535230 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTCTTAAATTATTAA+CGG - chr7_1:20535858-20535877 None:intergenic 10.0%
!! GTTAATTATAATCAAATTCA+TGG + chr7_1:20536333-20536352 Msa1013560:intron 15.0%
!! AAATAACATTTAGTAATCTT+GGG + chr7_1:20536473-20536492 Msa1013560:intron 15.0%
!! AAATACAATAATTAAGTCTA+AGG - chr7_1:20537500-20537519 None:intergenic 15.0%
!! TGAAAATAATGATAAGATTG+TGG - chr7_1:20535210-20535229 None:intergenic 20.0%
!! ACAATAACTTGAACATTATA+TGG - chr7_1:20535506-20535525 None:intergenic 20.0%
!!! TTTGTTTTTGTTAACTGTTT+TGG + chr7_1:20535739-20535758 Msa1013560:intron 20.0%
!! ACAAAAAATTAAATGAAGCA+CGG - chr7_1:20535972-20535991 None:intergenic 20.0%
!! TTTAATAATGTTCAAATTCG+TGG - chr7_1:20536261-20536280 None:intergenic 20.0%
!! ATAATCAAATTCATGGATAA+TGG + chr7_1:20536340-20536359 Msa1013560:intron 20.0%
!! TAATCAAATTCATGGATAAT+GGG + chr7_1:20536341-20536360 Msa1013560:intron 20.0%
!! CAAATAACATTTAGTAATCT+TGG + chr7_1:20536472-20536491 Msa1013560:intron 20.0%
!!! TGTAGCTTAATTTATTTTGT+TGG + chr7_1:20536960-20536979 Msa1013560:intron 20.0%
!!! GTAGCTTAATTTATTTTGTT+GGG + chr7_1:20536961-20536980 Msa1013560:intron 20.0%
!!! TAGCTTAATTTATTTTGTTG+GGG + chr7_1:20536962-20536981 Msa1013560:intron 20.0%
!! TGAAAAATCATACATAATGT+GGG - chr7_1:20537416-20537435 None:intergenic 20.0%
!! ATATATAACTAGTACATGAT+CGG - chr7_1:20537682-20537701 None:intergenic 20.0%
! ATTCACATAATAACATACCT+AGG - chr7_1:20535695-20535714 None:intergenic 25.0%
! TCTTAAATTATTAACGGTGT+TGG - chr7_1:20535852-20535871 None:intergenic 25.0%
!!! GCTTCATTTAATTTTTTGTG+TGG + chr7_1:20535973-20535992 Msa1013560:intron 25.0%
!!! ATTTAATTTTTTGTGTGGAC+CGG + chr7_1:20535978-20535997 Msa1013560:intron 25.0%
! ATTTAACATTGATGCATTCT+CGG + chr7_1:20536084-20536103 Msa1013560:intron 25.0%
! CAATCTAATCTAGATATTTG+TGG - chr7_1:20536204-20536223 None:intergenic 25.0%
! CACAAATATCTAGATTAGAT+TGG + chr7_1:20536202-20536221 Msa1013560:intron 25.0%
! AATATCTAGATTAGATTGGA+TGG + chr7_1:20536206-20536225 Msa1013560:intron 25.0%
! AATCAAATTCATGGATAATG+GGG + chr7_1:20536342-20536361 Msa1013560:intron 25.0%
! AAATCTGACAACTTCATAAA+CGG - chr7_1:20536432-20536451 None:intergenic 25.0%
! TTTATGAAGTTGTCAGATTT+AGG + chr7_1:20536432-20536451 Msa1013560:intron 25.0%
!!! TAGTGTTTTGATTTATGACT+GGG + chr7_1:20536680-20536699 Msa1013560:intron 25.0%
! TCATAACAATACCATTATCA+AGG - chr7_1:20536761-20536780 None:intergenic 25.0%
!!! AAAGTTGATGTTTCAACTTA+TGG - chr7_1:20536803-20536822 None:intergenic 25.0%
! TTGTTGGGGTTATTAAATAT+AGG + chr7_1:20536976-20536995 Msa1013560:intron 25.0%
!! TTTATTTAAAACCTCCAGTT+GGG + chr7_1:20537167-20537186 Msa1013560:intron 25.0%
! GAAAAATCATACATAATGTG+GGG - chr7_1:20537415-20537434 None:intergenic 25.0%
! GTGAAAAATCATACATAATG+TGG - chr7_1:20537417-20537436 None:intergenic 25.0%
AAACTTGAAGACATATCTTG+TGG - chr7_1:20535452-20535471 None:intergenic 30.0%
!!! AAGGTTTTTTGAGAATACAC+AGG + chr7_1:20535613-20535632 Msa1013560:CDS 30.0%
!!! TGAGTGTTTGGTTTTAGTAT+TGG + chr7_1:20535785-20535804 Msa1013560:intron 30.0%
!!! TTTAATTTTTTGTGTGGACC+GGG + chr7_1:20535979-20535998 Msa1013560:intron 30.0%
CATTTCATTCGAGTATTCTT+GGG + chr7_1:20536157-20536176 Msa1013560:intron 30.0%
ATTTGAACACATGAGAATTG+TGG + chr7_1:20536311-20536330 Msa1013560:intron 30.0%
TAACATTTAGTAATCTTGGG+AGG + chr7_1:20536476-20536495 Msa1013560:intron 30.0%
! AGGTAGTTGATATCAATTTC+AGG + chr7_1:20536496-20536515 Msa1013560:intron 30.0%
ACACTATCATGTTAGGTAAA+TGG + chr7_1:20536594-20536613 Msa1013560:intron 30.0%
TAAATGGTTGTAGAGAAAGA+TGG + chr7_1:20536610-20536629 Msa1013560:intron 30.0%
TCTCATGTTTGTAGGTAAAA+TGG + chr7_1:20536641-20536660 Msa1013560:intron 30.0%
TTTGTAGGTAAAATGGAAGT+AGG + chr7_1:20536648-20536667 Msa1013560:intron 30.0%
!!! CTAGTGTTTTGATTTATGAC+TGG + chr7_1:20536679-20536698 Msa1013560:intron 30.0%
CATCTGTAATACCTTGATAA+TGG + chr7_1:20536747-20536766 Msa1013560:intron 30.0%
GGGGTTATTAAATATAGGTT+TGG + chr7_1:20536981-20537000 Msa1013560:intron 30.0%
TAAATATAGGTTTGGATCAG+AGG + chr7_1:20536989-20537008 Msa1013560:intron 30.0%
!!! CAACTGGAGGTTTTAAATAA+AGG - chr7_1:20537168-20537187 None:intergenic 30.0%
! CTTTATTTAAAACCTCCAGT+TGG + chr7_1:20537166-20537185 Msa1013560:intron 30.0%
! TTATTTAAAACCTCCAGTTG+GGG + chr7_1:20537168-20537187 Msa1013560:intron 30.0%
AAATTTAGTACATCCTCTTC+AGG - chr7_1:20537378-20537397 None:intergenic 30.0%
! TTTTCACATTTTACTGTGAG+AGG + chr7_1:20537430-20537449 Msa1013560:three_prime_UTR 30.0%
TCGGTAAATTCAACATCATA+GGG - chr7_1:20537663-20537682 None:intergenic 30.0%
ATCGGTAAATTCAACATCAT+AGG - chr7_1:20537664-20537683 None:intergenic 30.0%
! ATTTTCACCACCATCATCAA+TGG + chr7_1:20535223-20535242 Msa1013560:exon 35.0%
!!! TGAACTTGTTATTGCGGTTT+TGG - chr7_1:20535349-20535368 None:intergenic 35.0%
!! GTGGTATGAACTTGTTATTG+CGG - chr7_1:20535355-20535374 None:intergenic 35.0%
ATGAAGAAGAGGTTTCATTG+CGG - chr7_1:20535388-20535407 None:intergenic 35.0%
TGATGTGATTGATGAAGAAG+AGG - chr7_1:20535399-20535418 None:intergenic 35.0%
! TTCAAGAGTGTAAGAGAAGA+AGG + chr7_1:20535594-20535613 Msa1013560:CDS 35.0%
ATACACAGGATGAGAAGAAA+AGG + chr7_1:20535627-20535646 Msa1013560:CDS 35.0%
ACGAAGAAGAATTGAGTGTT+TGG + chr7_1:20535773-20535792 Msa1013560:intron 35.0%
GAGCTAGATATGACTGTAAT+GGG + chr7_1:20536039-20536058 Msa1013560:intron 35.0%
AAATTTGAACCTAAGACCTG+TGG + chr7_1:20536111-20536130 Msa1013560:intron 35.0%
CCAAGAATACTCGAATGAAA+TGG - chr7_1:20536159-20536178 None:intergenic 35.0%
CCATTTCATTCGAGTATTCT+TGG + chr7_1:20536156-20536175 Msa1013560:intron 35.0%
!! AGTATTCTTGGGCTAGTATT+AGG + chr7_1:20536168-20536187 Msa1013560:intron 35.0%
GTTAACACAATTCACACTCA+TGG - chr7_1:20536410-20536429 None:intergenic 35.0%
TTCATCGTTCTCATGTTTGT+AGG + chr7_1:20536633-20536652 Msa1013560:intron 35.0%
!! AAGAGCGTTTAGAGCTTATT+TGG - chr7_1:20536720-20536739 None:intergenic 35.0%
! CAAGGTATTACAGATGCATT+TGG - chr7_1:20536743-20536762 None:intergenic 35.0%
GTTGATGTTTCAACTTATGG+TGG - chr7_1:20536800-20536819 None:intergenic 35.0%
! TGCATGTGAATGTGTTCTTT+TGG + chr7_1:20536835-20536854 Msa1013560:intron 35.0%
CTCTCTTCATGTCGTATATT+TGG - chr7_1:20536904-20536923 None:intergenic 35.0%
CTTGATATTGTGAGCAATCA+CGG + chr7_1:20537049-20537068 Msa1013560:intron 35.0%
!!! TTGCAGTTTTGTTGCAGTTT+TGG + chr7_1:20537097-20537116 Msa1013560:intron 35.0%
! CACGGAAAACTGATTTATCA+CGG + chr7_1:20537123-20537142 Msa1013560:intron 35.0%
!!! GTTTTAACTTGATGCAAGAG+GGG - chr7_1:20537640-20537659 None:intergenic 35.0%
!!! GGTTTTAACTTGATGCAAGA+GGG - chr7_1:20537641-20537660 None:intergenic 35.0%
CGGTAAATTCAACATCATAG+GGG - chr7_1:20537662-20537681 None:intergenic 35.0%
GAATGAGAAGAAGTTGGAGA+AGG - chr7_1:20535261-20535280 None:intergenic 40.0%
TGAAGGGAATGAGAAGAAGT+TGG - chr7_1:20535267-20535286 None:intergenic 40.0%
!!! GTGATTTTGTTGGTGGTGAA+GGG - chr7_1:20535283-20535302 None:intergenic 40.0%
AATGGAGAGAGAAGTTGAGA+GGG - chr7_1:20535317-20535336 None:intergenic 40.0%
!! TATTGCGGTTTTGGTGAGAT+GGG - chr7_1:20535340-20535359 None:intergenic 40.0%
!! TTATTGCGGTTTTGGTGAGA+TGG - chr7_1:20535341-20535360 None:intergenic 40.0%
CTTGAAGACATATCTTGTGG+TGG - chr7_1:20535449-20535468 None:intergenic 40.0%
CTATTAAGCAACCTCTCTTC+AGG - chr7_1:20535542-20535561 None:intergenic 40.0%
CTGAAGAGAGGTTGCTTAAT+AGG + chr7_1:20535540-20535559 Msa1013560:CDS 40.0%
GCTTAATAGGTTTCGTAGAG+AGG + chr7_1:20535553-20535572 Msa1013560:CDS 40.0%
TATATGTGCCCGTATTGTGT+CGG + chr7_1:20535894-20535913 Msa1013560:intron 40.0%
TCTTCAAATAAGTCGTGACC+CGG - chr7_1:20535945-20535964 None:intergenic 40.0%
! TACAGTCATATCTAGCTCGA+GGG - chr7_1:20536037-20536056 None:intergenic 40.0%
! TTACAGTCATATCTAGCTCG+AGG - chr7_1:20536038-20536057 None:intergenic 40.0%
CGAGCTAGATATGACTGTAA+TGG + chr7_1:20536038-20536057 Msa1013560:intron 40.0%
ACCTAAGACCTGTGGTTAAA+CGG + chr7_1:20536119-20536138 Msa1013560:intron 40.0%
ATCTCTTTCCGTTTAACCAC+AGG - chr7_1:20536130-20536149 None:intergenic 40.0%
! ATTTCAAGTGATCCAACTGC+AGG + chr7_1:20536285-20536304 Msa1013560:intron 40.0%
TGTTCAAATCTACCTGCAGT+TGG - chr7_1:20536300-20536319 None:intergenic 40.0%
ACTCATGGTTAGTGATGTGT+TGG - chr7_1:20536395-20536414 None:intergenic 40.0%
TTTCAGGAATCAACCTTTCC+TGG + chr7_1:20536512-20536531 Msa1013560:intron 40.0%
! CGATTTTTGACAAGCACATG+TGG - chr7_1:20536548-20536567 None:intergenic 40.0%
! CTAACATGATAGTGTGACAC+AGG - chr7_1:20536589-20536608 None:intergenic 40.0%
CTGTGTCACACTATCATGTT+AGG + chr7_1:20536587-20536606 Msa1013560:intron 40.0%
TGGATCAGAGGTTTAAACAG+CGG + chr7_1:20537001-20537020 Msa1013560:intron 40.0%
TGCAATTGATGCCACATTGA+TGG - chr7_1:20537082-20537101 None:intergenic 40.0%
!! TTGTTGCAGTTTTGGCAACA+CGG + chr7_1:20537105-20537124 Msa1013560:intron 40.0%
GAAAATGATGCAAGACACAC+AGG - chr7_1:20537250-20537269 None:intergenic 40.0%
! GTGTGTCTTGCATCATTTTC+AGG + chr7_1:20537250-20537269 Msa1013560:intron 40.0%
TAGTTGTTGTACTGTCCTCT+TGG - chr7_1:20537300-20537319 None:intergenic 40.0%
AGATGATCCAAAACCCAAGA+AGG + chr7_1:20537326-20537345 Msa1013560:CDS 40.0%
TCATCATCCTCTTCCTTCTT+GGG - chr7_1:20537342-20537361 None:intergenic 40.0%
ATCATCATCCTCTTCCTTCT+TGG - chr7_1:20537343-20537362 None:intergenic 40.0%
AGGAAGAGGATGATGATAAC+TGG + chr7_1:20537346-20537365 Msa1013560:CDS 40.0%
GGAAGAGGATGATGATAACT+GGG + chr7_1:20537347-20537366 Msa1013560:CDS 40.0%
!!! GGGTTTTAACTTGATGCAAG+AGG - chr7_1:20537642-20537661 None:intergenic 40.0%
GTTGAGAGAGCCATTGATGA+TGG - chr7_1:20535236-20535255 None:intergenic 45.0%
!!! GGTGATTTTGTTGGTGGTGA+AGG - chr7_1:20535284-20535303 None:intergenic 45.0%
! GGTTGTGGTGATTTTGTTGG+TGG - chr7_1:20535290-20535309 None:intergenic 45.0%
! GGTGGTTGTGGTGATTTTGT+TGG - chr7_1:20535293-20535312 None:intergenic 45.0%
GAATGGAGAGAGAAGTTGAG+AGG - chr7_1:20535318-20535337 None:intergenic 45.0%
TCATTGCGGCTTAGAACAAG+TGG - chr7_1:20535374-20535393 None:intergenic 45.0%
GACATATCTTGTGGTGGTTG+TGG - chr7_1:20535443-20535462 None:intergenic 45.0%
AAGATGATGAGCCTGAAGAG+AGG + chr7_1:20535528-20535547 Msa1013560:CDS 45.0%
ATGCTGCTAAGCGTAATCGT+AGG + chr7_1:20535660-20535679 Msa1013560:CDS 45.0%
CTAAGCGTAATCGTAGGAAC+AGG + chr7_1:20535666-20535685 Msa1013560:CDS 45.0%
ATCGTAGGAACAGGTTTCCT+AGG + chr7_1:20535675-20535694 Msa1013560:CDS 45.0%
TGGTTATGAAGCACAGACAC+CGG + chr7_1:20535805-20535824 Msa1013560:intron 45.0%
TCCGTTTAACCACAGGTCTT+AGG - chr7_1:20536123-20536142 None:intergenic 45.0%
GGTTAGTGATGTGTTGGACT+TGG - chr7_1:20536389-20536408 None:intergenic 45.0%
TGGAAAACATACGCCAGGAA+AGG - chr7_1:20536528-20536547 None:intergenic 45.0%
ACATGTGGAAAACATACGCC+AGG - chr7_1:20536533-20536552 None:intergenic 45.0%
GACAGCAAGAACTACTGTGA+AGG + chr7_1:20536865-20536884 Msa1013560:intron 45.0%
ACTACTGTGAAGGTAGTTCC+AGG + chr7_1:20536875-20536894 Msa1013560:intron 45.0%
CTACTGTGAAGGTAGTTCCA+GGG + chr7_1:20536876-20536895 Msa1013560:intron 45.0%
TACTGTGAAGGTAGTTCCAG+GGG + chr7_1:20536877-20536896 Msa1013560:intron 45.0%
ATGTCGTATATTTGGTCCCC+TGG - chr7_1:20536896-20536915 None:intergenic 45.0%
ACGGTCAAATGCCATCAATG+TGG + chr7_1:20537068-20537087 Msa1013560:intron 45.0%
ATGTCAAACGACGAGAAAGG+GGG - chr7_1:20537214-20537233 None:intergenic 45.0%
CATGTCAAACGACGAGAAAG+GGG - chr7_1:20537215-20537234 None:intergenic 45.0%
CCATGTCAAACGACGAGAAA+GGG - chr7_1:20537216-20537235 None:intergenic 45.0%
TCCATGTCAAACGACGAGAA+AGG - chr7_1:20537217-20537236 None:intergenic 45.0%
!! ATCATTTTCAGGCGCCCTAT+GGG + chr7_1:20537261-20537280 Msa1013560:intron 45.0%
GAGGACAGTACAACAACTAC+AGG + chr7_1:20537301-20537320 Msa1013560:CDS 45.0%
TCCAAAACCCAAGAAGGAAG+AGG + chr7_1:20537332-20537351 Msa1013560:CDS 45.0%
! TCCTCTTCCTTCTTGGGTTT+TGG - chr7_1:20537336-20537355 None:intergenic 45.0%
TAACTGGGATCTACCTGAAG+AGG + chr7_1:20537362-20537381 Msa1013560:CDS 45.0%
! GAGAGGCTTTGTATGCATGT+AGG + chr7_1:20537447-20537466 Msa1013560:three_prime_UTR 45.0%
GTAAGACTCCAGAGAATCGA+GGG - chr7_1:20537599-20537618 None:intergenic 45.0%
!! CTCGATTCTCTGGAGTCTTA+CGG + chr7_1:20537598-20537617 Msa1013560:three_prime_UTR 45.0%
! TTAACTTGATGCAAGAGGGG+AGG - chr7_1:20537637-20537656 None:intergenic 45.0%
!! GAGAGAGCCATTGATGATGG+TGG - chr7_1:20535233-20535252 None:intergenic 50.0%
!! CGGTTTTGGTGAGATGGGAA+TGG - chr7_1:20535335-20535354 None:intergenic 50.0%
CGTAGAGAGGTTATGAGAGC+TGG + chr7_1:20535566-20535585 Msa1013560:CDS 50.0%
TGTCCGACACCGACACAATA+CGG - chr7_1:20535906-20535925 None:intergenic 50.0%
ACACGACATGTGTTCGACAC+CGG + chr7_1:20535923-20535942 Msa1013560:intron 50.0%
CAGTTGCAACCAGAGATACC+CGG - chr7_1:20536000-20536019 None:intergenic 50.0%
TGTCAAACGACGAGAAAGGG+GGG - chr7_1:20537213-20537232 None:intergenic 50.0%
CCCTTTCTCGTCGTTTGACA+TGG + chr7_1:20537213-20537232 Msa1013560:intron 50.0%
!! CATCATTTTCAGGCGCCCTA+TGG + chr7_1:20537260-20537279 Msa1013560:intron 50.0%
TTGATCTGCCCTCGATTCTC+TGG + chr7_1:20537588-20537607 Msa1013560:three_prime_UTR 50.0%
CGTAAGACTCCAGAGAATCG+AGG - chr7_1:20537600-20537619 None:intergenic 50.0%
! AGTTGAGAGGGTGGTGGTTG+TGG - chr7_1:20535305-20535324 None:intergenic 55.0%
GAGAGAAGTTGAGAGGGTGG+TGG - chr7_1:20535311-20535330 None:intergenic 55.0%
GGAGAGAGAAGTTGAGAGGG+TGG - chr7_1:20535314-20535333 None:intergenic 55.0%
TGTCAGTGTCGTGTCGTGTC+CGG - chr7_1:20535827-20535846 None:intergenic 55.0%
! TGCCCGTATTGTGTCGGTGT+CGG + chr7_1:20535900-20535919 Msa1013560:intron 55.0%
GTCCGACACCGACACAATAC+GGG - chr7_1:20535905-20535924 None:intergenic 55.0%
CACGACATGTGTTCGACACC+GGG + chr7_1:20535924-20535943 Msa1013560:intron 55.0%
TTGTGTGGACCGGGTATCTC+TGG + chr7_1:20535988-20536007 Msa1013560:intron 55.0%
TGTCATGACACCCCAACTGG+AGG - chr7_1:20537181-20537200 None:intergenic 55.0%
CCATGTCATGACACCCCAAC+TGG - chr7_1:20537184-20537203 None:intergenic 55.0%
! CCAGTTGGGGTGTCATGACA+TGG + chr7_1:20537181-20537200 Msa1013560:intron 55.0%
!! ATTTTCAGGCGCCCTATGGG+AGG + chr7_1:20537264-20537283 Msa1013560:intron 55.0%
!! TTTTCAGGCGCCCTATGGGA+GGG + chr7_1:20537265-20537284 Msa1013560:intron 55.0%
TTTCAGGCGCCCTATGGGAG+GGG + chr7_1:20537266-20537285 Msa1013560:intron 60.0%
GTGACTTCCCCCCTCCCATA+GGG - chr7_1:20537278-20537297 None:intergenic 60.0%
CACGGCTCAGCTTGCAGTCG+CGG + chr7_1:20537141-20537160 Msa1013560:intron 65.0%
TTCAGGCGCCCTATGGGAGG+GGG + chr7_1:20537267-20537286 Msa1013560:intron 65.0%
GGTGACTTCCCCCCTCCCAT+AGG - chr7_1:20537279-20537298 None:intergenic 65.0%
GGAGGGGGGAAGTCACCAAG+AGG + chr7_1:20537282-20537301 Msa1013560:CDS 65.0%
TCAGGCGCCCTATGGGAGGG+GGG + chr7_1:20537268-20537287 Msa1013560:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 20535187 20537704 20535187 ID=Msa1013560;Name=Msa1013560
chr7_1 mRNA 20535187 20537704 20535187 ID=Msa1013560-mRNA-1;Parent=Msa1013560;Name=Msa1013560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=55|1|1|1|1|1|2|303|194
chr7_1 exon 20535187 20535696 20535187 ID=Msa1013560-mRNA-1:exon:4878;Parent=Msa1013560-mRNA-1
chr7_1 exon 20537272 20537704 20537272 ID=Msa1013560-mRNA-1:exon:4879;Parent=Msa1013560-mRNA-1
chr7_1 five_prime_UTR 20535187 20535241 20535187 ID=Msa1013560-mRNA-1:five_prime_utr;Parent=Msa1013560-mRNA-1
chr7_1 CDS 20535242 20535696 20535242 ID=Msa1013560-mRNA-1:cds;Parent=Msa1013560-mRNA-1
chr7_1 CDS 20537272 20537401 20537272 ID=Msa1013560-mRNA-1:cds;Parent=Msa1013560-mRNA-1
chr7_1 three_prime_UTR 20537402 20537704 20537402 ID=Msa1013560-mRNA-1:three_prime_utr;Parent=Msa1013560-mRNA-1
Gene Sequence

>Msa1013560

ATGGCTCTCTCAACTTCCTTCTCCAACTTCTTCTCATTCCCTTCACCACCAACAAAATCACCACAACCACCACCCTCTCAACTTCTCTCTCCATTCCCATCTCACCAAAACCGCAATAACAAGTTCATACCACTTGTTCTAAGCCGCAATGAAACCTCTTCTTCATCAATCACATCATCATCTTCATCATCTTCTTCACCACAACCACCACAAGATATGTCTTCAAGTTTCTCAACATCAAACTCAATGTTCTTAGCATCACCATATAATGTTCAAGTTATTGTTGAAGATGATGAGCCTGAAGAGAGGTTGCTTAATAGGTTTCGTAGAGAGGTTATGAGAGCTGGTATTATTCAAGAGTGTAAGAGAAGAAGGTTTTTTGAGAATACACAGGATGAGAAGAAAAGGAGAGTTCGTGATGCTGCTAAGCGTAATCGTAGGAACAGGTTTCCTAGGCGCCCTATGGGAGGGGGGAAGTCACCAAGAGGACAGTACAACAACTACAGGCAAGATGATCCAAAACCCAAGAAGGAAGAGGATGATGATAACTGGGATCTACCTGAAGAGGATGTACTAAATTTTTAA

Protein sequence

>Msa1013560

MALSTSFSNFFSFPSPPTKSPQPPPSQLLSPFPSHQNRNNKFIPLVLSRNETSSSSITSSSSSSSSPQPPQDMSSSFSTSNSMFLASPYNVQVIVEDDEPEERLLNRFRREVMRAGIIQECKRRRFFENTQDEKKRRVRDAAKRNRRNRFPRRPMGGGKSPRGQYNNYRQDDPKPKKEEDDDNWDLPEEDVLNF*