AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0155550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0155550 MtrunA17_Chr1g0166331 97.279 147 3 1 1 147 1 146 3.09e-99 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0155550 AT2G33450.1 71.223 139 30 3 15 147 9 143 4.60e-61 185

Find 47 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTGTAATTGAGTAAA+AGG 0.215746 1_4:+21023708 Msa0155550:three_prime_UTR
GGCCCTGTTTGATTTCTTTC+CGG 0.253338 1_4:-21023482 None:intergenic
ACTGCAGTTTCTTTGTCTTA+TGG 0.268492 1_4:-21023525 None:intergenic
ATCAAGTCCATTCTTCTCTA+TGG 0.282588 1_4:-21023632 None:intergenic
TGAGAATAGGCAAATAAGAT+TGG 0.336727 1_4:+21021678 Msa0155550:five_prime_UTR
AAGAGAGTTTGGTGGGAAGC+TGG 0.407615 1_4:+21023565 Msa0155550:CDS
ACCTCCAGTACAAGAGAGTT+TGG 0.413996 1_4:+21023554 Msa0155550:CDS
CTAGCAACAATTGGTTGAAA+AGG 0.417846 1_4:-21022025 None:intergenic
GAGAATAGGCAAATAAGATT+GGG 0.425766 1_4:+21021679 Msa0155550:five_prime_UTR
CTTTGTCTTATGGTTTGAAA+AGG 0.427226 1_4:-21023515 None:intergenic
GTTTGAAAAGGATACTTTGT+TGG 0.430284 1_4:-21023503 None:intergenic
AAAATATATTTGAAGGGTAG+TGG 0.436600 1_4:+21021632 Msa0155550:five_prime_UTR
ATTCAAAGTCTTCATTATGA+AGG 0.438728 1_4:-21023880 None:intergenic
GTTTGATTTCTTTCCGGTGA+AGG 0.440508 1_4:-21023476 None:intergenic
TCATAACATAATTTGAGAAT+AGG 0.442387 1_4:+21021665 Msa0155550:five_prime_UTR
AATAACTTACTAGCAACAAT+TGG 0.447154 1_4:-21022034 None:intergenic
TCACCGGAAAGAAATCAAAC+AGG 0.457839 1_4:+21023479 Msa0155550:CDS
AAAGCTTCGTTTGTCAACTA+AGG 0.463346 1_4:+21023600 Msa0155550:CDS
TATGTCATGAATCTTACAAA+TGG 0.472969 1_4:+21023839 Msa0155550:three_prime_UTR
CCCACCAAACTCTCTTGTAC+TGG 0.486040 1_4:-21023558 None:intergenic
TTTGATTTCTTTCCGGTGAA+GGG 0.493506 1_4:-21023475 None:intergenic
TGAAGAGGGTTTGAGAGTGT+TGG 0.494959 1_4:-21021792 None:intergenic
TGAAAAGGAGAAGCAACAAT+TGG 0.502659 1_4:-21022010 None:intergenic
TTCAAAGTCTTCATTATGAA+GGG 0.513570 1_4:-21023879 None:intergenic
TTACGGGGAGAGAATGAAGA+GGG 0.523588 1_4:-21021806 None:intergenic
AGAGAGTTTGGTGGGAAGCT+GGG 0.527154 1_4:+21023566 Msa0155550:CDS
TTGAAAACCATAGAGAAGAA+TGG 0.536514 1_4:+21023625 Msa0155550:CDS
GAGAGAGTGTGTCCCTTCAC+CGG 0.545165 1_4:+21023463 Msa0155550:intron
AAATATATTTGAAGGGTAGT+GGG 0.545821 1_4:+21021633 Msa0155550:five_prime_UTR
GCGGGTTCTGCAGTATCACT+TGG 0.558417 1_4:+21021725 Msa0155550:CDS
ATAGGCAAATAAGATTGGGT+TGG 0.560218 1_4:+21021683 Msa0155550:five_prime_UTR
TAAGAAGAAAGAACAATGGC+GGG 0.571626 1_4:+21021707 Msa0155550:exon
CCAGTACAAGAGAGTTTGGT+GGG 0.583767 1_4:+21023558 Msa0155550:CDS
ACAGGAGTTGATTCTGACTA+CGG 0.589928 1_4:+21023793 Msa0155550:three_prime_UTR
ACCAAACTCTCTTGTACTGG+AGG 0.590235 1_4:-21023555 None:intergenic
GGAGAAGCAACAATTGGTGT+GGG 0.591267 1_4:-21022004 None:intergenic
TTCTTGAATTCTCAGTTAAG+CGG 0.591300 1_4:+21021947 Msa0155550:CDS
AGGAGAAGCAACAATTGGTG+TGG 0.599759 1_4:-21022005 None:intergenic
TCAAAGTCTTCATTATGAAG+GGG 0.615498 1_4:-21023878 None:intergenic
TATATTTGAAGGGTAGTGGG+TGG 0.617897 1_4:+21021636 Msa0155550:five_prime_UTR
AATTGAGCGCATAGAAGCGA+AGG 0.628936 1_4:-21021759 None:intergenic
GTTACGGGGAGAGAATGAAG+AGG 0.629441 1_4:-21021807 None:intergenic
GCGCATAGAAGCGAAGGCGA+AGG 0.638749 1_4:-21021753 None:intergenic
TCCAGTACAAGAGAGTTTGG+TGG 0.651100 1_4:+21023557 Msa0155550:CDS
CACCGGAAAGAAATCAAACA+GGG 0.654830 1_4:+21023480 Msa0155550:CDS
ATAAGAAGAAAGAACAATGG+CGG 0.662454 1_4:+21021706 Msa0155550:exon
TGGATAAGAAGAAAGAACAA+TGG 0.702792 1_4:+21021703 Msa0155550:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAAAAATGAAAAAGAT+CGG - chr1_4:21022174-21022193 None:intergenic 10.0%
!!! CATTTTTTAAAAATTATTAC+CGG - chr1_4:21022331-21022350 None:intergenic 10.0%
!! ATTTACAATAATAATAATCA+GGG - chr1_4:21023407-21023426 None:intergenic 10.0%
!!! TTTCTTTATGTATTATTTTT+AGG + chr1_4:21023769-21023788 Msa0155550:three_prime_UTR 10.0%
!!! TTCTTTATGTATTATTTTTA+GGG + chr1_4:21023770-21023789 Msa0155550:three_prime_UTR 10.0%
!! ATATTAAAAATGAAAAAGAT+CGG - chr1_4:21022174-21022193 None:intergenic 10.0%
!!! CATTTTTTAAAAATTATTAC+CGG - chr1_4:21022331-21022350 None:intergenic 10.0%
!! ATTTACAATAATAATAATCA+GGG - chr1_4:21023407-21023426 None:intergenic 10.0%
!!! TTTCTTTATGTATTATTTTT+AGG + chr1_4:21023769-21023788 Msa0155550:three_prime_UTR 10.0%
!!! TTCTTTATGTATTATTTTTA+GGG + chr1_4:21023770-21023789 Msa0155550:three_prime_UTR 10.0%
!!! ATTTTATGATTTCAGAATTA+GGG + chr1_4:21021924-21021943 Msa0155550:intron 15.0%
!! TGAAAAATATCAGTAATTAT+TGG - chr1_4:21022084-21022103 None:intergenic 15.0%
!!! AATTGTTAAATTTAAAATGC+GGG - chr1_4:21022148-21022167 None:intergenic 15.0%
!!! CAATTGTTAAATTTAAAATG+CGG - chr1_4:21022149-21022168 None:intergenic 15.0%
!!! CGGTAATAATTTTTAAAAAA+TGG + chr1_4:21022329-21022348 Msa0155550:intron 15.0%
!! GAAATAATAAAATGTTATTG+AGG + chr1_4:21022351-21022370 Msa0155550:intron 15.0%
!!! TGCTCTAATTTTAAAAAATA+TGG + chr1_4:21022434-21022453 Msa0155550:intron 15.0%
!!! ATATTTTTAGTGTTTTATTG+TGG + chr1_4:21022938-21022957 Msa0155550:intron 15.0%
!!! TATTTTTAGTGTTTTATTGT+GGG + chr1_4:21022939-21022958 Msa0155550:intron 15.0%
!! ATACAAAAAAGAACTATAAT+AGG - chr1_4:21023046-21023065 None:intergenic 15.0%
!!! TTTTAACACTAATCATTTAA+GGG - chr1_4:21023192-21023211 None:intergenic 15.0%
!!! TTTTTAACACTAATCATTTA+AGG - chr1_4:21023193-21023212 None:intergenic 15.0%
!! TAAATGATTAGTGTTAAAAA+TGG + chr1_4:21023193-21023212 Msa0155550:intron 15.0%
!! AAATGATTAGTGTTAAAAAT+GGG + chr1_4:21023194-21023213 Msa0155550:intron 15.0%
!!! TCCATTAAATAATAAGTTTT+TGG + chr1_4:21023275-21023294 Msa0155550:intron 15.0%
!! GATTTACAATAATAATAATC+AGG - chr1_4:21023408-21023427 None:intergenic 15.0%
!! TATTGTAAATCAATTTAACT+TGG + chr1_4:21023417-21023436 Msa0155550:intron 15.0%
!!! ATTTTATGATTTCAGAATTA+GGG + chr1_4:21021924-21021943 Msa0155550:intron 15.0%
!! TGAAAAATATCAGTAATTAT+TGG - chr1_4:21022084-21022103 None:intergenic 15.0%
!!! AATTGTTAAATTTAAAATGC+GGG - chr1_4:21022148-21022167 None:intergenic 15.0%
!!! CAATTGTTAAATTTAAAATG+CGG - chr1_4:21022149-21022168 None:intergenic 15.0%
!!! CGGTAATAATTTTTAAAAAA+TGG + chr1_4:21022329-21022348 Msa0155550:intron 15.0%
!! GAAATAATAAAATGTTATTG+AGG + chr1_4:21022351-21022370 Msa0155550:intron 15.0%
!!! TGCTCTAATTTTAAAAAATA+TGG + chr1_4:21022434-21022453 Msa0155550:intron 15.0%
!!! ATATTTTTAGTGTTTTATTG+TGG + chr1_4:21022938-21022957 Msa0155550:intron 15.0%
!!! TATTTTTAGTGTTTTATTGT+GGG + chr1_4:21022939-21022958 Msa0155550:intron 15.0%
!! ATACAAAAAAGAACTATAAT+AGG - chr1_4:21023046-21023065 None:intergenic 15.0%
!!! TTTTAACACTAATCATTTAA+GGG - chr1_4:21023192-21023211 None:intergenic 15.0%
!!! TTTTTAACACTAATCATTTA+AGG - chr1_4:21023193-21023212 None:intergenic 15.0%
!! TAAATGATTAGTGTTAAAAA+TGG + chr1_4:21023193-21023212 Msa0155550:intron 15.0%
!! AAATGATTAGTGTTAAAAAT+GGG + chr1_4:21023194-21023213 Msa0155550:intron 15.0%
!!! TCCATTAAATAATAAGTTTT+TGG + chr1_4:21023275-21023294 Msa0155550:intron 15.0%
!! GATTTACAATAATAATAATC+AGG - chr1_4:21023408-21023427 None:intergenic 15.0%
!! TATTGTAAATCAATTTAACT+TGG + chr1_4:21023417-21023436 Msa0155550:intron 15.0%
!! TCATAACATAATTTGAGAAT+AGG + chr1_4:21021665-21021684 Msa0155550:five_prime_UTR 20.0%
!! ATAGTTAAGTTAGTTAGTTA+CGG - chr1_4:21021826-21021845 None:intergenic 20.0%
!!! CTAATTCTGAAATCATAAAA+TGG - chr1_4:21021925-21021944 None:intergenic 20.0%
!!! CATTTTATGATTTCAGAATT+AGG + chr1_4:21021923-21021942 Msa0155550:intron 20.0%
!! TAACACATTTACAAAAAACA+AGG - chr1_4:21022678-21022697 None:intergenic 20.0%
!! GTAAACAGATTAATAGAAAT+TGG + chr1_4:21022783-21022802 Msa0155550:intron 20.0%
!! ATTGGAAACAACAATAATTA+AGG + chr1_4:21022801-21022820 Msa0155550:intron 20.0%
!! CCTATTGTTATGAAAATAAA+AGG - chr1_4:21022828-21022847 None:intergenic 20.0%
!!! CCTTTTATTTTCATAACAAT+AGG + chr1_4:21022825-21022844 Msa0155550:intron 20.0%
!!! ATTTTCATAACAATAGGAAT+AGG + chr1_4:21022831-21022850 Msa0155550:intron 20.0%
!!! ATTTTTAGTGTTTTATTGTG+GGG + chr1_4:21022940-21022959 Msa0155550:intron 20.0%
!! AATGATTAGTGTTAAAAATG+GGG + chr1_4:21023195-21023214 Msa0155550:intron 20.0%
!! GCCAAAAACTTATTATTTAA+TGG - chr1_4:21023279-21023298 None:intergenic 20.0%
!!! CCAAATATGTGTATTTTTTT+GGG - chr1_4:21023328-21023347 None:intergenic 20.0%
!!! ACCAAATATGTGTATTTTTT+TGG - chr1_4:21023329-21023348 None:intergenic 20.0%
!! TATGATTGTAATTGAGTAAA+AGG + chr1_4:21023708-21023727 Msa0155550:three_prime_UTR 20.0%
!! ACAACAAAAATTAATGAACA+TGG - chr1_4:21023740-21023759 None:intergenic 20.0%
!! TCATAACATAATTTGAGAAT+AGG + chr1_4:21021665-21021684 Msa0155550:five_prime_UTR 20.0%
!! ATAGTTAAGTTAGTTAGTTA+CGG - chr1_4:21021826-21021845 None:intergenic 20.0%
!!! CTAATTCTGAAATCATAAAA+TGG - chr1_4:21021925-21021944 None:intergenic 20.0%
!!! CATTTTATGATTTCAGAATT+AGG + chr1_4:21021923-21021942 Msa0155550:intron 20.0%
!! TAACACATTTACAAAAAACA+AGG - chr1_4:21022678-21022697 None:intergenic 20.0%
!! GTAAACAGATTAATAGAAAT+TGG + chr1_4:21022783-21022802 Msa0155550:intron 20.0%
!! ATTGGAAACAACAATAATTA+AGG + chr1_4:21022801-21022820 Msa0155550:intron 20.0%
!! CCTATTGTTATGAAAATAAA+AGG - chr1_4:21022828-21022847 None:intergenic 20.0%
!!! CCTTTTATTTTCATAACAAT+AGG + chr1_4:21022825-21022844 Msa0155550:intron 20.0%
!!! ATTTTCATAACAATAGGAAT+AGG + chr1_4:21022831-21022850 Msa0155550:intron 20.0%
!!! ATTTTTAGTGTTTTATTGTG+GGG + chr1_4:21022940-21022959 Msa0155550:intron 20.0%
!! AATGATTAGTGTTAAAAATG+GGG + chr1_4:21023195-21023214 Msa0155550:intron 20.0%
!! GCCAAAAACTTATTATTTAA+TGG - chr1_4:21023279-21023298 None:intergenic 20.0%
!!! CCAAATATGTGTATTTTTTT+GGG - chr1_4:21023328-21023347 None:intergenic 20.0%
!!! ACCAAATATGTGTATTTTTT+TGG - chr1_4:21023329-21023348 None:intergenic 20.0%
!! TATGATTGTAATTGAGTAAA+AGG + chr1_4:21023708-21023727 Msa0155550:three_prime_UTR 20.0%
!! ACAACAAAAATTAATGAACA+TGG - chr1_4:21023740-21023759 None:intergenic 20.0%
! AAAATATATTTGAAGGGTAG+TGG + chr1_4:21021632-21021651 Msa0155550:five_prime_UTR 25.0%
! AAATATATTTGAAGGGTAGT+GGG + chr1_4:21021633-21021652 Msa0155550:five_prime_UTR 25.0%
! TAGTTAAGTTAGTTAGTTAC+GGG - chr1_4:21021825-21021844 None:intergenic 25.0%
! AATAACTTACTAGCAACAAT+TGG - chr1_4:21022037-21022056 None:intergenic 25.0%
! TTGTATATCACAATCAGATT+AGG - chr1_4:21022218-21022237 None:intergenic 25.0%
! AAGGAATTATTGCATAAAGA+CGG - chr1_4:21022659-21022678 None:intergenic 25.0%
! AACATATGTTCTATACAAAC+AGG - chr1_4:21023156-21023175 None:intergenic 25.0%
! GTTTGTATAGAACATATGTT+AGG + chr1_4:21023156-21023175 Msa0155550:intron 25.0%
! CCCAAAAAAATACACATATT+TGG + chr1_4:21023325-21023344 Msa0155550:intron 25.0%
!!! TATGTATTATTTTTAGGGAC+AGG + chr1_4:21023775-21023794 Msa0155550:three_prime_UTR 25.0%
! TATGTCATGAATCTTACAAA+TGG + chr1_4:21023839-21023858 Msa0155550:three_prime_UTR 25.0%
! TTCAAAGTCTTCATTATGAA+GGG - chr1_4:21023882-21023901 None:intergenic 25.0%
! ATTCAAAGTCTTCATTATGA+AGG - chr1_4:21023883-21023902 None:intergenic 25.0%
! AAAATATATTTGAAGGGTAG+TGG + chr1_4:21021632-21021651 Msa0155550:five_prime_UTR 25.0%
! AAATATATTTGAAGGGTAGT+GGG + chr1_4:21021633-21021652 Msa0155550:five_prime_UTR 25.0%
! TAGTTAAGTTAGTTAGTTAC+GGG - chr1_4:21021825-21021844 None:intergenic 25.0%
! AATAACTTACTAGCAACAAT+TGG - chr1_4:21022037-21022056 None:intergenic 25.0%
! TTGTATATCACAATCAGATT+AGG - chr1_4:21022218-21022237 None:intergenic 25.0%
! AAGGAATTATTGCATAAAGA+CGG - chr1_4:21022659-21022678 None:intergenic 25.0%
! AACATATGTTCTATACAAAC+AGG - chr1_4:21023156-21023175 None:intergenic 25.0%
! GTTTGTATAGAACATATGTT+AGG + chr1_4:21023156-21023175 Msa0155550:intron 25.0%
! CCCAAAAAAATACACATATT+TGG + chr1_4:21023325-21023344 Msa0155550:intron 25.0%
!!! TATGTATTATTTTTAGGGAC+AGG + chr1_4:21023775-21023794 Msa0155550:three_prime_UTR 25.0%
! TATGTCATGAATCTTACAAA+TGG + chr1_4:21023839-21023858 Msa0155550:three_prime_UTR 25.0%
! TTCAAAGTCTTCATTATGAA+GGG - chr1_4:21023882-21023901 None:intergenic 25.0%
! ATTCAAAGTCTTCATTATGA+AGG - chr1_4:21023883-21023902 None:intergenic 25.0%
TGAGAATAGGCAAATAAGAT+TGG + chr1_4:21021678-21021697 Msa0155550:five_prime_UTR 30.0%
GAGAATAGGCAAATAAGATT+GGG + chr1_4:21021679-21021698 Msa0155550:five_prime_UTR 30.0%
TGGATAAGAAGAAAGAACAA+TGG + chr1_4:21021703-21021722 Msa0155550:exon 30.0%
ATAAGAAGAAAGAACAATGG+CGG + chr1_4:21021706-21021725 Msa0155550:exon 30.0%
AGTTAAGTTAGTTAGTTACG+GGG - chr1_4:21021824-21021843 None:intergenic 30.0%
TTCTTGAATTCTCAGTTAAG+CGG + chr1_4:21021947-21021966 Msa0155550:CDS 30.0%
!! CATAATAGTTTGTTTCTTGC+AGG + chr1_4:21022555-21022574 Msa0155550:intron 30.0%
TTCAGTCGTAAGTATATTAG+AGG + chr1_4:21022726-21022745 Msa0155550:intron 30.0%
CAATAGGAATAGGAAAAGAA+TGG + chr1_4:21022841-21022860 Msa0155550:intron 30.0%
! AAAAGTACACAAACCATAGT+TGG - chr1_4:21022881-21022900 None:intergenic 30.0%
ATAAGAGAACATGCATAACA+TGG + chr1_4:21023074-21023093 Msa0155550:intron 30.0%
TAGACACTAATGATGTAGTT+TGG - chr1_4:21023367-21023386 None:intergenic 30.0%
ACTACATCATTAGTGTCTAA+AGG + chr1_4:21023368-21023387 Msa0155550:intron 30.0%
!! CAATTTAACTTGGTGTACTT+TGG + chr1_4:21023427-21023446 Msa0155550:intron 30.0%
GTTTGAAAAGGATACTTTGT+TGG - chr1_4:21023506-21023525 None:intergenic 30.0%
CTTTGTCTTATGGTTTGAAA+AGG - chr1_4:21023518-21023537 None:intergenic 30.0%
TTGAAAACCATAGAGAAGAA+TGG + chr1_4:21023625-21023644 Msa0155550:CDS 30.0%
TCAAAGTCTTCATTATGAAG+GGG - chr1_4:21023881-21023900 None:intergenic 30.0%
TGAGAATAGGCAAATAAGAT+TGG + chr1_4:21021678-21021697 Msa0155550:five_prime_UTR 30.0%
GAGAATAGGCAAATAAGATT+GGG + chr1_4:21021679-21021698 Msa0155550:five_prime_UTR 30.0%
TGGATAAGAAGAAAGAACAA+TGG + chr1_4:21021703-21021722 Msa0155550:exon 30.0%
ATAAGAAGAAAGAACAATGG+CGG + chr1_4:21021706-21021725 Msa0155550:exon 30.0%
AGTTAAGTTAGTTAGTTACG+GGG - chr1_4:21021824-21021843 None:intergenic 30.0%
TTCTTGAATTCTCAGTTAAG+CGG + chr1_4:21021947-21021966 Msa0155550:CDS 30.0%
!! CATAATAGTTTGTTTCTTGC+AGG + chr1_4:21022555-21022574 Msa0155550:intron 30.0%
TTCAGTCGTAAGTATATTAG+AGG + chr1_4:21022726-21022745 Msa0155550:intron 30.0%
CAATAGGAATAGGAAAAGAA+TGG + chr1_4:21022841-21022860 Msa0155550:intron 30.0%
! AAAAGTACACAAACCATAGT+TGG - chr1_4:21022881-21022900 None:intergenic 30.0%
ATAAGAGAACATGCATAACA+TGG + chr1_4:21023074-21023093 Msa0155550:intron 30.0%
TAGACACTAATGATGTAGTT+TGG - chr1_4:21023367-21023386 None:intergenic 30.0%
ACTACATCATTAGTGTCTAA+AGG + chr1_4:21023368-21023387 Msa0155550:intron 30.0%
!! CAATTTAACTTGGTGTACTT+TGG + chr1_4:21023427-21023446 Msa0155550:intron 30.0%
GTTTGAAAAGGATACTTTGT+TGG - chr1_4:21023506-21023525 None:intergenic 30.0%
CTTTGTCTTATGGTTTGAAA+AGG - chr1_4:21023518-21023537 None:intergenic 30.0%
TTGAAAACCATAGAGAAGAA+TGG + chr1_4:21023625-21023644 Msa0155550:CDS 30.0%
TCAAAGTCTTCATTATGAAG+GGG - chr1_4:21023881-21023900 None:intergenic 30.0%
ATAGGCAAATAAGATTGGGT+TGG + chr1_4:21021683-21021702 Msa0155550:five_prime_UTR 35.0%
TAAGAAGAAAGAACAATGGC+GGG + chr1_4:21021707-21021726 Msa0155550:exon 35.0%
TGAAAAGGAGAAGCAACAAT+TGG - chr1_4:21022013-21022032 None:intergenic 35.0%
CTAGCAACAATTGGTTGAAA+AGG - chr1_4:21022028-21022047 None:intergenic 35.0%
TGACAATGACATGTAAACAC+CGG + chr1_4:21022309-21022328 Msa0155550:intron 35.0%
AAATGTTATTGAGGTCGTGT+CGG + chr1_4:21022360-21022379 Msa0155550:intron 35.0%
ATAATAGGCCAACGTAAACT+AGG - chr1_4:21023031-21023050 None:intergenic 35.0%
TTAAGACCTGTTTGCATTGA+AGG + chr1_4:21023231-21023250 Msa0155550:intron 35.0%
ATATGTCCTTCAATGCAAAC+AGG - chr1_4:21023240-21023259 None:intergenic 35.0%
CTCTTAGTTAGAGATACCAT+GGG + chr1_4:21023298-21023317 Msa0155550:intron 35.0%
!!! TATTTTTTTGGGTGAACCCA+TGG - chr1_4:21023317-21023336 None:intergenic 35.0%
! TTTGATTTCTTTCCGGTGAA+GGG - chr1_4:21023478-21023497 None:intergenic 35.0%
ACTGCAGTTTCTTTGTCTTA+TGG - chr1_4:21023528-21023547 None:intergenic 35.0%
AAAGCTTCGTTTGTCAACTA+AGG + chr1_4:21023600-21023619 Msa0155550:CDS 35.0%
ATCAAGTCCATTCTTCTCTA+TGG - chr1_4:21023635-21023654 None:intergenic 35.0%
ACTTGATGCAGTTGCAAAAA+AGG + chr1_4:21023648-21023667 Msa0155550:CDS 35.0%
ATAGGCAAATAAGATTGGGT+TGG + chr1_4:21021683-21021702 Msa0155550:five_prime_UTR 35.0%
TAAGAAGAAAGAACAATGGC+GGG + chr1_4:21021707-21021726 Msa0155550:exon 35.0%
TGAAAAGGAGAAGCAACAAT+TGG - chr1_4:21022013-21022032 None:intergenic 35.0%
CTAGCAACAATTGGTTGAAA+AGG - chr1_4:21022028-21022047 None:intergenic 35.0%
TGACAATGACATGTAAACAC+CGG + chr1_4:21022309-21022328 Msa0155550:intron 35.0%
AAATGTTATTGAGGTCGTGT+CGG + chr1_4:21022360-21022379 Msa0155550:intron 35.0%
ATAATAGGCCAACGTAAACT+AGG - chr1_4:21023031-21023050 None:intergenic 35.0%
TTAAGACCTGTTTGCATTGA+AGG + chr1_4:21023231-21023250 Msa0155550:intron 35.0%
ATATGTCCTTCAATGCAAAC+AGG - chr1_4:21023240-21023259 None:intergenic 35.0%
CTCTTAGTTAGAGATACCAT+GGG + chr1_4:21023298-21023317 Msa0155550:intron 35.0%
!!! TATTTTTTTGGGTGAACCCA+TGG - chr1_4:21023317-21023336 None:intergenic 35.0%
! TTTGATTTCTTTCCGGTGAA+GGG - chr1_4:21023478-21023497 None:intergenic 35.0%
ACTGCAGTTTCTTTGTCTTA+TGG - chr1_4:21023528-21023547 None:intergenic 35.0%
AAAGCTTCGTTTGTCAACTA+AGG + chr1_4:21023600-21023619 Msa0155550:CDS 35.0%
ATCAAGTCCATTCTTCTCTA+TGG - chr1_4:21023635-21023654 None:intergenic 35.0%
ACTTGATGCAGTTGCAAAAA+AGG + chr1_4:21023648-21023667 Msa0155550:CDS 35.0%
!! TATATTTGAAGGGTAGTGGG+TGG + chr1_4:21021636-21021655 Msa0155550:five_prime_UTR 40.0%
ACAAGGGACACATCTTCAAT+TGG + chr1_4:21022518-21022537 Msa0155550:intron 40.0%
TGCATAAAGACGGTGTTTAC+AGG - chr1_4:21022649-21022668 None:intergenic 40.0%
TACCTGTAAGAGACCAACTA+TGG + chr1_4:21022865-21022884 Msa0155550:intron 40.0%
! AACCATAGTTGGTCTCTTAC+AGG - chr1_4:21022870-21022889 None:intergenic 40.0%
!! AACTAGGAAGGGTGTTTATC+TGG - chr1_4:21023015-21023034 None:intergenic 40.0%
AGAACATGCATAACATGGTG+TGG + chr1_4:21023079-21023098 Msa0155550:intron 40.0%
ACTGAGTTTCTTAAGCATGC+AGG + chr1_4:21023112-21023131 Msa0155550:intron 40.0%
GCTCTTAGTTAGAGATACCA+TGG + chr1_4:21023297-21023316 Msa0155550:intron 40.0%
! GTTTGATTTCTTTCCGGTGA+AGG - chr1_4:21023479-21023498 None:intergenic 40.0%
TCACCGGAAAGAAATCAAAC+AGG + chr1_4:21023479-21023498 Msa0155550:CDS 40.0%
CACCGGAAAGAAATCAAACA+GGG + chr1_4:21023480-21023499 Msa0155550:CDS 40.0%
! ACAGGAGTTGATTCTGACTA+CGG + chr1_4:21023793-21023812 Msa0155550:three_prime_UTR 40.0%
!! TATATTTGAAGGGTAGTGGG+TGG + chr1_4:21021636-21021655 Msa0155550:five_prime_UTR 40.0%
ACAAGGGACACATCTTCAAT+TGG + chr1_4:21022518-21022537 Msa0155550:intron 40.0%
TGCATAAAGACGGTGTTTAC+AGG - chr1_4:21022649-21022668 None:intergenic 40.0%
TACCTGTAAGAGACCAACTA+TGG + chr1_4:21022865-21022884 Msa0155550:intron 40.0%
! AACCATAGTTGGTCTCTTAC+AGG - chr1_4:21022870-21022889 None:intergenic 40.0%
!! AACTAGGAAGGGTGTTTATC+TGG - chr1_4:21023015-21023034 None:intergenic 40.0%
AGAACATGCATAACATGGTG+TGG + chr1_4:21023079-21023098 Msa0155550:intron 40.0%
ACTGAGTTTCTTAAGCATGC+AGG + chr1_4:21023112-21023131 Msa0155550:intron 40.0%
GCTCTTAGTTAGAGATACCA+TGG + chr1_4:21023297-21023316 Msa0155550:intron 40.0%
! GTTTGATTTCTTTCCGGTGA+AGG - chr1_4:21023479-21023498 None:intergenic 40.0%
TCACCGGAAAGAAATCAAAC+AGG + chr1_4:21023479-21023498 Msa0155550:CDS 40.0%
CACCGGAAAGAAATCAAACA+GGG + chr1_4:21023480-21023499 Msa0155550:CDS 40.0%
! ACAGGAGTTGATTCTGACTA+CGG + chr1_4:21023793-21023812 Msa0155550:three_prime_UTR 40.0%
AATTGAGCGCATAGAAGCGA+AGG - chr1_4:21021762-21021781 None:intergenic 45.0%
! TGAAGAGGGTTTGAGAGTGT+TGG - chr1_4:21021795-21021814 None:intergenic 45.0%
TTACGGGGAGAGAATGAAGA+GGG - chr1_4:21021809-21021828 None:intergenic 45.0%
GGAGAAGCAACAATTGGTGT+GGG - chr1_4:21022007-21022026 None:intergenic 45.0%
AGGAGAAGCAACAATTGGTG+TGG - chr1_4:21022008-21022027 None:intergenic 45.0%
!! TTGACACTGACTCGTGTCAT+TGG + chr1_4:21022386-21022405 Msa0155550:intron 45.0%
ACTCTAACACGTGTCAGACA+AGG + chr1_4:21022501-21022520 Msa0155550:intron 45.0%
CTCTAACACGTGTCAGACAA+GGG + chr1_4:21022502-21022521 Msa0155550:intron 45.0%
!! GTGTTTTATTGTGGGGACAG+AGG + chr1_4:21022947-21022966 Msa0155550:intron 45.0%
ATCTGGCACTCTAACGATGA+AGG - chr1_4:21022998-21023017 None:intergenic 45.0%
ACACCCTTCCTAGTTTACGT+TGG + chr1_4:21023020-21023039 Msa0155550:intron 45.0%
AGGCCAACGTAAACTAGGAA+GGG - chr1_4:21023026-21023045 None:intergenic 45.0%
TAGGCCAACGTAAACTAGGA+AGG - chr1_4:21023027-21023046 None:intergenic 45.0%
! GGCCCTGTTTGATTTCTTTC+CGG - chr1_4:21023485-21023504 None:intergenic 45.0%
ACCTCCAGTACAAGAGAGTT+TGG + chr1_4:21023554-21023573 Msa0155550:CDS 45.0%
ACCAAACTCTCTTGTACTGG+AGG - chr1_4:21023558-21023577 None:intergenic 45.0%
TCCAGTACAAGAGAGTTTGG+TGG + chr1_4:21023557-21023576 Msa0155550:CDS 45.0%
CCAGTACAAGAGAGTTTGGT+GGG + chr1_4:21023558-21023577 Msa0155550:CDS 45.0%
GATGCAGTTGCAAAAAAGGC+TGG + chr1_4:21023652-21023671 Msa0155550:CDS 45.0%
AATTGAGCGCATAGAAGCGA+AGG - chr1_4:21021762-21021781 None:intergenic 45.0%
! TGAAGAGGGTTTGAGAGTGT+TGG - chr1_4:21021795-21021814 None:intergenic 45.0%
TTACGGGGAGAGAATGAAGA+GGG - chr1_4:21021809-21021828 None:intergenic 45.0%
GGAGAAGCAACAATTGGTGT+GGG - chr1_4:21022007-21022026 None:intergenic 45.0%
AGGAGAAGCAACAATTGGTG+TGG - chr1_4:21022008-21022027 None:intergenic 45.0%
!! TTGACACTGACTCGTGTCAT+TGG + chr1_4:21022386-21022405 Msa0155550:intron 45.0%
ACTCTAACACGTGTCAGACA+AGG + chr1_4:21022501-21022520 Msa0155550:intron 45.0%
CTCTAACACGTGTCAGACAA+GGG + chr1_4:21022502-21022521 Msa0155550:intron 45.0%
!! GTGTTTTATTGTGGGGACAG+AGG + chr1_4:21022947-21022966 Msa0155550:intron 45.0%
ATCTGGCACTCTAACGATGA+AGG - chr1_4:21022998-21023017 None:intergenic 45.0%
ACACCCTTCCTAGTTTACGT+TGG + chr1_4:21023020-21023039 Msa0155550:intron 45.0%
AGGCCAACGTAAACTAGGAA+GGG - chr1_4:21023026-21023045 None:intergenic 45.0%
TAGGCCAACGTAAACTAGGA+AGG - chr1_4:21023027-21023046 None:intergenic 45.0%
! GGCCCTGTTTGATTTCTTTC+CGG - chr1_4:21023485-21023504 None:intergenic 45.0%
ACCTCCAGTACAAGAGAGTT+TGG + chr1_4:21023554-21023573 Msa0155550:CDS 45.0%
ACCAAACTCTCTTGTACTGG+AGG - chr1_4:21023558-21023577 None:intergenic 45.0%
TCCAGTACAAGAGAGTTTGG+TGG + chr1_4:21023557-21023576 Msa0155550:CDS 45.0%
CCAGTACAAGAGAGTTTGGT+GGG + chr1_4:21023558-21023577 Msa0155550:CDS 45.0%
GATGCAGTTGCAAAAAAGGC+TGG + chr1_4:21023652-21023671 Msa0155550:CDS 45.0%
GTTACGGGGAGAGAATGAAG+AGG - chr1_4:21021810-21021829 None:intergenic 50.0%
ATTGTGGGGACAGAGGAGTT+TGG + chr1_4:21022954-21022973 Msa0155550:intron 50.0%
CCCACCAAACTCTCTTGTAC+TGG - chr1_4:21023561-21023580 None:intergenic 50.0%
! AAGAGAGTTTGGTGGGAAGC+TGG + chr1_4:21023565-21023584 Msa0155550:CDS 50.0%
! AGAGAGTTTGGTGGGAAGCT+GGG + chr1_4:21023566-21023585 Msa0155550:CDS 50.0%
GTTACGGGGAGAGAATGAAG+AGG - chr1_4:21021810-21021829 None:intergenic 50.0%
ATTGTGGGGACAGAGGAGTT+TGG + chr1_4:21022954-21022973 Msa0155550:intron 50.0%
CCCACCAAACTCTCTTGTAC+TGG - chr1_4:21023561-21023580 None:intergenic 50.0%
! AAGAGAGTTTGGTGGGAAGC+TGG + chr1_4:21023565-21023584 Msa0155550:CDS 50.0%
! AGAGAGTTTGGTGGGAAGCT+GGG + chr1_4:21023566-21023585 Msa0155550:CDS 50.0%
GCGGGTTCTGCAGTATCACT+TGG + chr1_4:21021725-21021744 Msa0155550:CDS 55.0%
GGCACTCTAACGATGAAGGC+TGG - chr1_4:21022994-21023013 None:intergenic 55.0%
! GAGAGAGTGTGTCCCTTCAC+CGG + chr1_4:21023463-21023482 Msa0155550:intron 55.0%
GCGGGTTCTGCAGTATCACT+TGG + chr1_4:21021725-21021744 Msa0155550:CDS 55.0%
GGCACTCTAACGATGAAGGC+TGG - chr1_4:21022994-21023013 None:intergenic 55.0%
! GAGAGAGTGTGTCCCTTCAC+CGG + chr1_4:21023463-21023482 Msa0155550:intron 55.0%
GCGCATAGAAGCGAAGGCGA+AGG - chr1_4:21021756-21021775 None:intergenic 60.0%
! GCATTGACGCGCAGGCTATG+TGG + chr1_4:21022250-21022269 Msa0155550:intron 60.0%
GCGCAGGCTATGTGGAGCAT+GGG + chr1_4:21022258-21022277 Msa0155550:intron 60.0%
GCGCATAGAAGCGAAGGCGA+AGG - chr1_4:21021756-21021775 None:intergenic 60.0%
! GCATTGACGCGCAGGCTATG+TGG + chr1_4:21022250-21022269 Msa0155550:intron 60.0%
GCGCAGGCTATGTGGAGCAT+GGG + chr1_4:21022258-21022277 Msa0155550:intron 60.0%
CGCGCAGGCTATGTGGAGCA+TGG + chr1_4:21022257-21022276 Msa0155550:intron 65.0%
CGCGCAGGCTATGTGGAGCA+TGG + chr1_4:21022257-21022276 Msa0155550:intron 65.0%
! ACGCACGCGCATTGACGCGC+AGG + chr1_4:21022242-21022261 Msa0155550:intron 70.0%
! ACGCACGCGCATTGACGCGC+AGG + chr1_4:21022242-21022261 Msa0155550:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 21021629 21023940 21021629 ID=Msa0155550;Name=Msa0155550
chr1_4 mRNA 21021629 21023940 21021629 ID=Msa0155550-mRNA-1;Parent=Msa0155550;Name=Msa0155550-mRNA-1;_AED=0.08;_eAED=0.08;_QI=93|1|1|1|1|1|3|244|147
chr1_4 exon 21021629 21021824 21021629 ID=Msa0155550-mRNA-1:exon:7590;Parent=Msa0155550-mRNA-1
chr1_4 exon 21021939 21022046 21021939 ID=Msa0155550-mRNA-1:exon:7591;Parent=Msa0155550-mRNA-1
chr1_4 exon 21023464 21023940 21023464 ID=Msa0155550-mRNA-1:exon:7592;Parent=Msa0155550-mRNA-1
chr1_4 five_prime_UTR 21021629 21021721 21021629 ID=Msa0155550-mRNA-1:five_prime_utr;Parent=Msa0155550-mRNA-1
chr1_4 CDS 21021722 21021824 21021722 ID=Msa0155550-mRNA-1:cds;Parent=Msa0155550-mRNA-1
chr1_4 CDS 21021939 21022046 21021939 ID=Msa0155550-mRNA-1:cds;Parent=Msa0155550-mRNA-1
chr1_4 CDS 21023464 21023696 21023464 ID=Msa0155550-mRNA-1:cds;Parent=Msa0155550-mRNA-1
chr1_4 three_prime_UTR 21023697 21023940 21023697 ID=Msa0155550-mRNA-1:three_prime_utr;Parent=Msa0155550-mRNA-1
Gene Sequence

>Msa0155550

ATGGCGGGTTCTGCAGTATCACTTGGAAACACCTTCGCCTTCGCTTCTATGCGCTCAATTTCATCATCAACCAACACTCTCAAACCCTCTTCATTCTCTCCCCAATTAGGGTTCTTGAATTCTCAGTTAAGCGGTCTGAAAATCTCGTCTCAGACTTCGCTTAAATTGCCCACACCAATTGTTGCTTCTCCTTTTCAACCAATTGTTGCTAAGAGAGTGTGTCCCTTCACCGGAAAGAAATCAAACAGGGCCAACAAAGTATCCTTTTCAAACCATAAGACAAAGAAACTGCAGTTTGTAAACCTCCAGTACAAGAGAGTTTGGTGGGAAGCTGGGAAGCGTTATGTAAAGCTTCGTTTGTCAACTAAGGCGTTGAAAACCATAGAGAAGAATGGACTTGATGCAGTTGCAAAAAAGGCTGGAATTGATCTCAGTAAGAAATGA

Protein sequence

>Msa0155550

MAGSAVSLGNTFAFASMRSISSSTNTLKPSSFSPQLGFLNSQLSGLKISSQTSLKLPTPIVASPFQPIVAKRVCPFTGKKSNRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLSKK*