Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1198400 | XP_024628813.2 | 96.045 | 986 | 39 | 0 | 1 | 986 | 1 | 986 | 0.0 | 1917 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1198400 | sp|Q94CG5|KIP1_PETIN | 42.311 | 1021 | 492 | 25 | 1 | 979 | 1 | 966 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1198400 | 0.800579 | 1.348783e-48 | -8.615850e-47 |
| Msa0629450 | Msa1198400 | 0.801551 | 8.537370e-49 | -8.615850e-47 |
| Msa0688270 | Msa1198400 | 0.811526 | 6.699496e-51 | -8.615850e-47 |
| Msa0731940 | Msa1198400 | 0.811718 | 6.084732e-51 | -8.615850e-47 |
| Msa0766630 | Msa1198400 | 0.845330 | 4.344240e-59 | -8.615850e-47 |
| Msa0794700 | Msa1198400 | 0.830592 | 2.692394e-55 | -8.615850e-47 |
| Msa0810220 | Msa1198400 | 0.818676 | 1.731299e-52 | -8.615850e-47 |
| Msa0811080 | Msa1198400 | 0.801833 | 7.473263e-49 | -8.615850e-47 |
| Msa0817460 | Msa1198400 | 0.809285 | 2.040237e-50 | -8.615850e-47 |
| Msa0131770 | Msa1198400 | 0.824378 | 8.339053e-54 | -8.615850e-47 |
| Msa0142220 | Msa1198400 | 0.825156 | 5.465282e-54 | -8.615850e-47 |
| Msa0161900 | Msa1198400 | 0.808732 | 2.680547e-50 | -8.615850e-47 |
| Msa0233300 | Msa1198400 | 0.810459 | 1.140894e-50 | -8.615850e-47 |
| Msa0371730 | Msa1198400 | 0.815571 | 8.634866e-52 | -8.615850e-47 |
| Msa0402290 | Msa1198400 | 0.801565 | 8.478348e-49 | -8.615850e-47 |
| Msa0407750 | Msa1198400 | 0.804798 | 1.817234e-49 | -8.615850e-47 |
| Msa0430420 | Msa1198400 | 0.807845 | 4.142214e-50 | -8.615850e-47 |
| Msa0466120 | Msa1198400 | 0.809635 | 1.716347e-50 | -8.615850e-47 |
| Msa1019150 | Msa1198400 | 0.813862 | 2.064743e-51 | -8.615850e-47 |
| Msa1023950 | Msa1198400 | 0.814348 | 1.613241e-51 | -8.615850e-47 |
| Msa1082500 | Msa1198400 | 0.804704 | 1.901449e-49 | -8.615850e-47 |
| Msa0290870 | Msa1198400 | 0.807640 | 4.579553e-50 | -8.615850e-47 |
| Msa0305190 | Msa1198400 | 0.804756 | 1.853946e-49 | -8.615850e-47 |
| Msa0326520 | Msa1198400 | 0.802112 | 6.547391e-49 | -8.615850e-47 |
| Msa1121490 | Msa1198400 | 0.806810 | 6.864065e-50 | -8.615850e-47 |
| Msa1147740 | Msa1198400 | 0.811919 | 5.503023e-51 | -8.615850e-47 |
| Msa1198400 | Msa1251910 | 0.836020 | 1.194877e-56 | -8.615850e-47 |
| Msa1198400 | Msa1292570 | 0.987110 | 4.310563e-169 | -8.615850e-47 |
| Msa1198400 | Msa1309030 | 0.808833 | 2.549885e-50 | -8.615850e-47 |
| Msa1198400 | Msa1353470 | 0.800309 | 1.531353e-48 | -8.615850e-47 |
| Msa1198400 | Msa1451570 | 0.824137 | 9.500428e-54 | -8.615850e-47 |
| Msa0600700 | Msa1198400 | 0.824720 | 6.925420e-54 | -8.615850e-47 |
| Msa0844490 | Msa1198400 | 0.816500 | 5.357160e-52 | -8.615850e-47 |
| Msa0933100 | Msa1198400 | 0.800407 | 1.462174e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1198400 | MtrunA17_Chr8g0367521 | 96.045 | 986 | 39 | 0 | 1 | 986 | 1 | 986 | 0.0 | 1917 |
| Msa1198400 | MtrunA17_Chr5g0412211 | 52.718 | 1159 | 360 | 21 | 1 | 986 | 1 | 1144 | 0.0 | 1048 |
| Msa1198400 | MtrunA17_Chr3g0132861 | 43.048 | 525 | 262 | 13 | 21 | 528 | 16 | 520 | 3.96e-109 | 361 |
| Msa1198400 | MtrunA17_Chr5g0427501 | 39.410 | 373 | 165 | 10 | 666 | 979 | 590 | 960 | 2.18e-65 | 238 |
| Msa1198400 | MtrunA17_Chr1g0204981 | 48.485 | 132 | 65 | 1 | 1 | 129 | 4 | 135 | 2.58e-36 | 149 |
| Msa1198400 | MtrunA17_Chr1g0185241 | 52.991 | 117 | 49 | 1 | 10 | 120 | 15 | 131 | 5.47e-36 | 148 |
| Msa1198400 | MtrunA17_Chr7g0260161 | 48.062 | 129 | 56 | 1 | 10 | 138 | 13 | 130 | 3.22e-34 | 142 |
| Msa1198400 | MtrunA17_Chr5g0394641 | 30.366 | 382 | 194 | 9 | 10 | 362 | 13 | 351 | 8.65e-34 | 141 |
| Msa1198400 | MtrunA17_Chr5g0432781 | 47.154 | 123 | 55 | 3 | 9 | 131 | 20 | 132 | 8.28e-30 | 126 |
| Msa1198400 | MtrunA17_Chr7g0268631 | 47.826 | 92 | 45 | 2 | 11 | 99 | 53 | 144 | 2.13e-22 | 100 |
| Msa1198400 | MtrunA17_Chr1g0196081 | 34.211 | 114 | 71 | 1 | 2 | 111 | 8 | 121 | 2.28e-18 | 89.7 |
| Msa1198400 | MtrunA17_Chr3g0107891 | 47.312 | 93 | 44 | 2 | 33 | 123 | 15 | 104 | 1.14e-17 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1198400 | AT2G22560.1 | 57.701 | 461 | 182 | 6 | 1 | 457 | 1 | 452 | 1.20e-161 | 500 |
| Msa1198400 | AT5G10500.1 | 47.468 | 474 | 217 | 7 | 1 | 469 | 1 | 447 | 4.53e-131 | 417 |
| Msa1198400 | AT5G10500.1 | 42.994 | 314 | 141 | 6 | 666 | 979 | 558 | 833 | 3.19e-56 | 210 |
| Msa1198400 | AT1G09720.1 | 45.378 | 476 | 223 | 7 | 1 | 468 | 1 | 447 | 2.98e-117 | 382 |
| Msa1198400 | AT1G09720.1 | 40.000 | 370 | 170 | 9 | 658 | 980 | 537 | 901 | 1.01e-65 | 239 |
| Msa1198400 | AT1G58215.1 | 39.609 | 409 | 182 | 8 | 637 | 980 | 514 | 922 | 2.54e-68 | 247 |
| Msa1198400 | AT3G22790.1 | 30.237 | 506 | 274 | 17 | 1 | 467 | 4 | 469 | 6.91e-43 | 171 |
| Msa1198400 | AT3G22790.3 | 30.237 | 506 | 274 | 17 | 1 | 467 | 4 | 469 | 6.91e-43 | 171 |
| Msa1198400 | AT3G22790.2 | 30.237 | 506 | 274 | 17 | 1 | 467 | 4 | 469 | 6.91e-43 | 171 |
| Msa1198400 | AT4G14760.4 | 29.259 | 499 | 283 | 19 | 3 | 467 | 6 | 468 | 1.56e-35 | 147 |
| Msa1198400 | AT4G14760.2 | 29.259 | 499 | 283 | 19 | 3 | 467 | 6 | 468 | 1.56e-35 | 147 |
| Msa1198400 | AT4G14760.3 | 29.259 | 499 | 283 | 19 | 3 | 467 | 6 | 468 | 1.56e-35 | 147 |
| Msa1198400 | AT4G14760.1 | 29.259 | 499 | 283 | 19 | 3 | 467 | 6 | 468 | 1.56e-35 | 147 |
| Msa1198400 | AT1G03080.3 | 38.764 | 178 | 98 | 2 | 7 | 178 | 9 | 181 | 8.82e-35 | 145 |
| Msa1198400 | AT1G03080.1 | 38.764 | 178 | 98 | 2 | 7 | 178 | 9 | 181 | 8.82e-35 | 145 |
| Msa1198400 | AT1G03080.2 | 38.764 | 178 | 98 | 2 | 7 | 178 | 9 | 181 | 8.82e-35 | 145 |
| Msa1198400 | AT4G02710.1 | 32.476 | 311 | 175 | 10 | 5 | 289 | 5 | 306 | 1.82e-32 | 137 |
| Msa1198400 | AT2G30500.2 | 55.682 | 88 | 38 | 1 | 9 | 96 | 20 | 106 | 4.32e-26 | 114 |
| Msa1198400 | AT2G30500.1 | 55.682 | 88 | 38 | 1 | 9 | 96 | 20 | 106 | 4.32e-26 | 114 |
| Msa1198400 | AT2G30500.3 | 55.682 | 88 | 38 | 1 | 9 | 96 | 19 | 105 | 4.77e-26 | 114 |
| Msa1198400 | AT5G58320.1 | 54.217 | 83 | 38 | 0 | 12 | 94 | 23 | 105 | 1.86e-24 | 109 |
| Msa1198400 | AT5G58320.4 | 54.217 | 83 | 38 | 0 | 12 | 94 | 23 | 105 | 1.86e-24 | 109 |
| Msa1198400 | AT5G58320.5 | 54.217 | 83 | 38 | 0 | 12 | 94 | 23 | 105 | 2.01e-24 | 109 |
| Msa1198400 | AT5G58320.2 | 54.217 | 83 | 38 | 0 | 12 | 94 | 23 | 105 | 2.01e-24 | 109 |
| Msa1198400 | AT2G47920.2 | 42.105 | 114 | 58 | 2 | 12 | 117 | 10 | 123 | 3.22e-22 | 97.1 |
| Msa1198400 | AT2G47920.1 | 42.105 | 114 | 58 | 2 | 12 | 117 | 10 | 123 | 3.22e-22 | 97.1 |
| Msa1198400 | AT1G03470.2 | 52.632 | 76 | 35 | 1 | 12 | 86 | 8 | 83 | 5.58e-20 | 91.7 |
| Msa1198400 | AT1G03470.3 | 52.632 | 76 | 35 | 1 | 12 | 86 | 8 | 83 | 5.58e-20 | 91.7 |
| Msa1198400 | AT1G03470.1 | 52.632 | 76 | 35 | 1 | 12 | 86 | 8 | 83 | 5.58e-20 | 91.7 |
| Msa1198400 | AT1G03470.4 | 52.632 | 76 | 35 | 1 | 12 | 86 | 8 | 83 | 5.58e-20 | 91.7 |
| Msa1198400 | AT5G58320.3 | 51.613 | 62 | 30 | 0 | 33 | 94 | 1 | 62 | 1.34e-13 | 74.7 |
| Msa1198400 | AT4G03153.1 | 36.458 | 96 | 55 | 3 | 12 | 101 | 7 | 102 | 2.90e-11 | 64.7 |
Find 136 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCATTCAATAAGATTT+TGG | 0.176661 | 8_1:+49921561 | None:intergenic |
| ATGCTGTTGTTATCTCTTCT+TGG | 0.181149 | 8_1:+49920657 | None:intergenic |
| TTTCTACTCAATCCTGATTT+AGG | 0.182892 | 8_1:+49922762 | None:intergenic |
| CCTTACTTCCCTTACTCTTT+TGG | 0.192513 | 8_1:+49922434 | None:intergenic |
| CCTCATTCGGTATCACCTTT+TGG | 0.233093 | 8_1:+49921680 | None:intergenic |
| AATCCTGATTTAGGAGCTTT+AGG | 0.233147 | 8_1:+49922771 | None:intergenic |
| ATAATTCCATTGCTAGATAT+TGG | 0.234388 | 8_1:-49922656 | Msa1198400:CDS |
| ACCGAGTTCGTCTTGCAAAT+TGG | 0.261286 | 8_1:+49922593 | None:intergenic |
| TCAACAGCAGAAGTTGATTC+TGG | 0.268774 | 8_1:+49920992 | None:intergenic |
| CCTCGTCTGGTATCACCTTT+TGG | 0.271862 | 8_1:+49921887 | None:intergenic |
| CCTCTAAGGTCATTTATCTT+TGG | 0.277004 | 8_1:-49920389 | Msa1198400:CDS |
| TTTACATCTCGTTTCGGCCT+CGG | 0.284477 | 8_1:+49922354 | None:intergenic |
| GCAAACGTGACAATGCTTCT+TGG | 0.304395 | 8_1:+49922499 | None:intergenic |
| TCCATATAAGGAACTCTATC+TGG | 0.306812 | 8_1:+49922963 | None:intergenic |
| AAATCTTTGAGTGGAGTCTT+TGG | 0.314691 | 8_1:+49922864 | None:intergenic |
| CTGCTGTTGAAGAGAAGTTT+AGG | 0.318730 | 8_1:-49920979 | Msa1198400:CDS |
| ACGTTTGGTTTCAATCCTTC+TGG | 0.318970 | 8_1:+49922897 | None:intergenic |
| CAATACGTCCATTTATTCAT+TGG | 0.319468 | 8_1:-49921530 | Msa1198400:CDS |
| CAATACGGCCATTGATTCAT+TGG | 0.327975 | 8_1:-49921713 | Msa1198400:CDS |
| AGTGGAGTCTTTGGAGCTTT+CGG | 0.333188 | 8_1:+49922873 | None:intergenic |
| CAATGAATCAATGGCCGTAT+TGG | 0.335865 | 8_1:+49921714 | None:intergenic |
| TGAAACGGAAAAGGAAAGTT+TGG | 0.339852 | 8_1:-49922067 | Msa1198400:CDS |
| TCCAGATAGAGTTCCTTATA+TGG | 0.346090 | 8_1:-49922964 | Msa1198400:CDS |
| TAGAGGAGAATCTAGAATTC+TGG | 0.350291 | 8_1:-49920937 | Msa1198400:CDS |
| AAATCATGAAAAGGATTATA+AGG | 0.353380 | 8_1:-49921368 | Msa1198400:CDS |
| TAATTCCATTGCTAGATATT+GGG | 0.353589 | 8_1:-49922655 | Msa1198400:CDS |
| TAAAGTTGCTGATGAGCTTC+AGG | 0.359570 | 8_1:-49920540 | Msa1198400:CDS |
| TCTCTTTCTTTCAACACTAT+AGG | 0.361479 | 8_1:+49921442 | None:intergenic |
| TCGTCGTCCTCATCCATATA+AGG | 0.365262 | 8_1:+49922951 | None:intergenic |
| TGTGATTTAACATCATGTTT+TGG | 0.365811 | 8_1:+49921787 | None:intergenic |
| GTCACGTTTGCAAGAGAAAC+AGG | 0.366657 | 8_1:-49922487 | Msa1198400:CDS |
| CATATTGAAGTTGATTCATA+AGG | 0.369783 | 8_1:+49922397 | None:intergenic |
| TATCGAAGCTCGAAACAAAA+TGG | 0.379973 | 8_1:-49920844 | Msa1198400:CDS |
| TCAACAAAGTTTATTAGCTC+TGG | 0.383758 | 8_1:+49923080 | None:intergenic |
| TTAGAACAAAGCAATCAAAA+TGG | 0.387996 | 8_1:-49923706 | Msa1198400:CDS |
| CCAAAGATAAATGACCTTAG+AGG | 0.389815 | 8_1:+49920389 | None:intergenic |
| CCAAAAGAGTAAGGGAAGTA+AGG | 0.391738 | 8_1:-49922434 | Msa1198400:CDS |
| ACTCTTTGAGTCATCATTGC+AGG | 0.395563 | 8_1:-49921185 | Msa1198400:CDS |
| TTTCGAGGCTGGCTCAAATT+CGG | 0.396521 | 8_1:-49922235 | Msa1198400:CDS |
| GACAGAAGCAATTGTGTTGT+TGG | 0.400635 | 8_1:+49922989 | None:intergenic |
| TGTGATTTAACGTTATGTTT+CGG | 0.407395 | 8_1:+49921601 | None:intergenic |
| CGAAGAACCGTGTTCCTCTA+AGG | 0.410206 | 8_1:-49920403 | Msa1198400:CDS |
| CAATGAATAAATGGACGTAT+TGG | 0.417435 | 8_1:+49921531 | None:intergenic |
| TTTGGAGCTTTCGGAACGTT+TGG | 0.418385 | 8_1:+49922882 | None:intergenic |
| TCGAATCCGAAGGTCTCATC+TGG | 0.419762 | 8_1:+49920423 | None:intergenic |
| AGTTTCTTCTCAAACAGCTT+TGG | 0.420468 | 8_1:-49922142 | Msa1198400:CDS |
| TTCAAAATGAACTCACACTA+TGG | 0.420988 | 8_1:-49920742 | Msa1198400:CDS |
| TACAAAAGATTTACTGATTG+AGG | 0.424969 | 8_1:-49920867 | Msa1198400:CDS |
| GAACGAGAAACTTAGAGAAA+TGG | 0.426500 | 8_1:-49922025 | Msa1198400:CDS |
| TACTGTTGTTGCTTTCTCCT+CGG | 0.428816 | 8_1:+49921306 | None:intergenic |
| GGCTTTAACCGTGACAGAAA+TGG | 0.430771 | 8_1:-49922214 | Msa1198400:CDS |
| TTGCTTTGTTCTAATGTGGC+TGG | 0.431424 | 8_1:+49923715 | None:intergenic |
| ACTTAGAGAAATGGACGAAA+TGG | 0.431565 | 8_1:-49922016 | Msa1198400:CDS |
| AAATCGAGTCCAAAAGAGTA+AGG | 0.433279 | 8_1:-49922443 | Msa1198400:CDS |
| TTTAAAGCTTCTAGAAGAAG+AGG | 0.435154 | 8_1:-49923147 | Msa1198400:CDS |
| GATACCAGACGAGGACGATA+TGG | 0.437799 | 8_1:-49921878 | Msa1198400:CDS |
| ACTCCTAAAGCTCCTAAATC+AGG | 0.441379 | 8_1:-49922774 | Msa1198400:CDS |
| TCGAATCTCTTCGTCTTTCA+CGG | 0.443211 | 8_1:+49921138 | None:intergenic |
| CGAGATGTAAAAGAAGTAAC+AGG | 0.444047 | 8_1:-49922342 | Msa1198400:CDS |
| CTCACCTTATCCTCCTCATT+CGG | 0.449905 | 8_1:+49921667 | None:intergenic |
| TGTTTCATATTTCTGTATCT+CGG | 0.450311 | 8_1:+49920892 | None:intergenic |
| GAAGATTAAAGAACATTTCG+AGG | 0.454058 | 8_1:-49922250 | Msa1198400:CDS |
| GCAATGCTTATTCATGGTGG+TGG | 0.462825 | 8_1:-49923739 | Msa1198400:CDS |
| GAGCAGAAATGTATTACAAA+AGG | 0.465180 | 8_1:-49923106 | Msa1198400:CDS |
| AAATGAACTCACACTATGGC+TGG | 0.467020 | 8_1:-49920738 | Msa1198400:CDS |
| CGAGGAGGCTCGCCGTTTGA+TGG | 0.468797 | 8_1:-49922544 | Msa1198400:CDS |
| ATTAAAGAACATTTCGAGGC+TGG | 0.469351 | 8_1:-49922246 | Msa1198400:CDS |
| GTTGCTGATGAGCTTCAGGC+TGG | 0.477201 | 8_1:-49920536 | Msa1198400:CDS |
| CTGCAAGCAATGCTTATTCA+TGG | 0.477662 | 8_1:-49923745 | Msa1198400:CDS |
| GCTGGTTCGCAACCTTGAAA+CGG | 0.479618 | 8_1:-49922082 | Msa1198400:CDS |
| TTGATTGCTTTGTTCTAATG+TGG | 0.483955 | 8_1:+49923711 | None:intergenic |
| TTGGAGGGAAATGAAGAAAT+CGG | 0.485167 | 8_1:-49921079 | Msa1198400:CDS |
| TGTTCTGATCTTCAACAACT+TGG | 0.492297 | 8_1:+49921971 | None:intergenic |
| ACCAGAAAATCATGTTATTG+AGG | 0.492750 | 8_1:-49921035 | Msa1198400:CDS |
| ATTGGAAAATGAAGTCCAAA+AGG | 0.496529 | 8_1:-49921695 | Msa1198400:CDS |
| TCTCTCTGATAAAGTCCAAA+AGG | 0.496569 | 8_1:-49921902 | Msa1198400:CDS |
| ATAATACAATCAATTGATGC+TGG | 0.499961 | 8_1:-49921391 | Msa1198400:CDS |
| ATATTGAAGTTGATTCATAA+GGG | 0.500924 | 8_1:+49922398 | None:intergenic |
| GGAAACTGAGGGACAGATCA+AGG | 0.501428 | 8_1:-49922634 | Msa1198400:CDS |
| CTCACCATATCGTCCTCGTC+TGG | 0.501832 | 8_1:+49921874 | None:intergenic |
| TCATATTCAAAACCTCGCCT+TGG | 0.503348 | 8_1:+49920576 | None:intergenic |
| GAGAAACCAGATGAGACCTT+CGG | 0.505800 | 8_1:-49920429 | Msa1198400:CDS |
| CAAAAGAGTAAGGGAAGTAA+GGG | 0.506192 | 8_1:-49922433 | Msa1198400:CDS |
| TAAAGTATTTGAAACAGAAG+AGG | 0.511073 | 8_1:-49921851 | Msa1198400:CDS |
| GATACCGAATGAGGAGGATA+AGG | 0.512984 | 8_1:-49921671 | Msa1198400:CDS |
| TGATGCTGGAAATCATGAAA+AGG | 0.514888 | 8_1:-49921377 | Msa1198400:CDS |
| TCGCAACCTTGAAACGGAAA+AGG | 0.515404 | 8_1:-49922076 | Msa1198400:CDS |
| TCCAATTTGCAAGACGAACT+CGG | 0.522122 | 8_1:-49922594 | Msa1198400:CDS |
| ATCAAGACTACAATGCGCTT+CGG | 0.526939 | 8_1:+49921927 | None:intergenic |
| AACAAAGCAATCAAAATGGA+TGG | 0.532965 | 8_1:-49923702 | Msa1198400:CDS |
| CGTACCTATCGGCTAAAGAT+CGG | 0.533688 | 8_1:+49923039 | None:intergenic |
| TATAATGCTGCGAAATTCCA+AGG | 0.542876 | 8_1:-49920593 | Msa1198400:CDS |
| AACTGATGAACTCCATTCGC+TGG | 0.544339 | 8_1:-49922100 | Msa1198400:CDS |
| GAGCCGCTTCTGCCATCAAA+CGG | 0.544838 | 8_1:+49922532 | None:intergenic |
| TTAAAGCTTCTAGAAGAAGA+GGG | 0.544929 | 8_1:-49923146 | Msa1198400:CDS |
| AAAGGATTTGAGTGAAGATG+TGG | 0.556266 | 8_1:-49922316 | Msa1198400:CDS |
| TAGAGTTCCTTATATGGATG+AGG | 0.558198 | 8_1:-49922958 | Msa1198400:CDS |
| TTGCAAGACGAACTCGGTGA+AGG | 0.558534 | 8_1:-49922588 | Msa1198400:CDS |
| TCTTCAACTAGATGCTGAGA+AGG | 0.561168 | 8_1:-49920495 | Msa1198400:CDS |
| TTGCTGATGAGCTTCAGGCT+GGG | 0.562771 | 8_1:-49920535 | Msa1198400:CDS |
| TGTTGAAGAGAAGTTTAGGA+TGG | 0.566244 | 8_1:-49920975 | Msa1198400:CDS |
| TCTGCAAGGTGCTTATAAAG+TGG | 0.568092 | 8_1:+49920767 | None:intergenic |
| TGCTAGATATTGGGAAACTG+AGG | 0.569587 | 8_1:-49922646 | Msa1198400:CDS |
| GGAAAACAGCGCGTTGCTGA+AGG | 0.570843 | 8_1:-49920717 | Msa1198400:CDS |
| TCGCCGTTTGATGGCAGAAG+CGG | 0.572967 | 8_1:-49922535 | Msa1198400:CDS |
| TGATGATGCAAAATCCAATA+CGG | 0.576914 | 8_1:-49921728 | Msa1198400:CDS |
| TAGAAAGCAAGCAATTGAAG+AGG | 0.578147 | 8_1:-49922745 | Msa1198400:CDS |
| CAAGGTTGCGAACCAGCGAA+TGG | 0.582849 | 8_1:+49922088 | None:intergenic |
| GTTGAAGAGAAGTTTAGGAT+GGG | 0.590016 | 8_1:-49920974 | Msa1198400:CDS |
| CCAAAAGGTGATACCGAATG+AGG | 0.590400 | 8_1:-49921680 | Msa1198400:CDS |
| AATGAAATGTGCAGATATGG+AGG | 0.592734 | 8_1:-49923186 | Msa1198400:intron |
| TTATAAGGAAATTTCATCTG+AGG | 0.593385 | 8_1:-49921353 | Msa1198400:CDS |
| CTTGTTACTGAATTTCCTTG+TGG | 0.598228 | 8_1:+49922815 | None:intergenic |
| TATATCATCATTTCAAAGCA+CGG | 0.601898 | 8_1:+49920315 | None:intergenic |
| ACAAAATGGAAAGCAACAGA+AGG | 0.603333 | 8_1:-49920830 | Msa1198400:CDS |
| TGCTGCGAAATTCCAAGGCG+AGG | 0.604091 | 8_1:-49920588 | Msa1198400:CDS |
| AAAAGAAGTAACAGGAACAA+AGG | 0.607695 | 8_1:-49922334 | Msa1198400:CDS |
| TGATAAGTGATCGTACCTAT+CGG | 0.609920 | 8_1:+49923028 | None:intergenic |
| CAATGCTTATTCATGGTGGT+GGG | 0.611643 | 8_1:-49923738 | Msa1198400:CDS |
| ACGACGACGAAGCATCGCCA+AGG | 0.611893 | 8_1:-49922935 | Msa1198400:CDS |
| AATCGAGTCCAAAAGAGTAA+GGG | 0.614608 | 8_1:-49922442 | Msa1198400:CDS |
| GGGAATCGACGAACTTCTAG+AGG | 0.619415 | 8_1:-49920954 | Msa1198400:CDS |
| AGTTTCCCAATATCTAGCAA+TGG | 0.619821 | 8_1:+49922650 | None:intergenic |
| TGTTAATGTTATTGATGACG+AGG | 0.631377 | 8_1:-49922562 | Msa1198400:CDS |
| CGGCTAAAGATCGGTATGCA+CGG | 0.631655 | 8_1:+49923048 | None:intergenic |
| AATCCAATTCGCAAAAGCCG+AGG | 0.632575 | 8_1:-49922371 | Msa1198400:CDS |
| ACACGGTTCTTCGAATCCGA+AGG | 0.634630 | 8_1:+49920413 | None:intergenic |
| TGGATGGAACAAAACCTCCA+AGG | 0.641564 | 8_1:-49923686 | Msa1198400:intron |
| GCTAGATATTGGGAAACTGA+GGG | 0.645079 | 8_1:-49922645 | Msa1198400:CDS |
| TAATGTTATTGATGACGAGG+AGG | 0.647964 | 8_1:-49922559 | Msa1198400:CDS |
| CATACCGATCTTTAGCCGAT+AGG | 0.649267 | 8_1:-49923043 | Msa1198400:CDS |
| AAAGGTGATACCGAATGAGG+AGG | 0.672192 | 8_1:-49921677 | Msa1198400:CDS |
| TAACGACAGCGACAGCCACA+AGG | 0.673857 | 8_1:-49922830 | Msa1198400:CDS |
| CAAGCAATGCTTATTCATGG+TGG | 0.700776 | 8_1:-49923742 | Msa1198400:CDS |
| CCAAAAGGTGATACCAGACG+AGG | 0.715557 | 8_1:-49921887 | Msa1198400:CDS |
| TAAATGACCTTAGAGGAACA+CGG | 0.755952 | 8_1:+49920396 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAGAAACAAGAAAATT+AGG | + | chr8_1:49920431-49920450 | None:intergenic | 15.0% |
| !!! | TGCTATTTCTTATTGTTTTT+TGG | - | chr8_1:49920512-49920531 | Msa1198400:CDS | 20.0% |
| !! | AAAAGTTAACTATTCATGTA+CGG | + | chr8_1:49920700-49920719 | None:intergenic | 20.0% |
| !!! | ATATTGAAGTTGATTCATAA+GGG | + | chr8_1:49921685-49921704 | None:intergenic | 20.0% |
| !!! | ATCATCATTCAATAAGATTT+TGG | + | chr8_1:49922522-49922541 | None:intergenic | 20.0% |
| !!! | TTCATTTTCCAATGAATAAA+TGG | + | chr8_1:49922561-49922580 | None:intergenic | 20.0% |
| !! | AAATCATGAAAAGGATTATA+AGG | - | chr8_1:49922712-49922731 | Msa1198400:CDS | 20.0% |
| ! | TTAGAACAAAGCAATCAAAA+TGG | - | chr8_1:49920374-49920393 | Msa1198400:CDS | 25.0% |
| ! | ATTAGGAGAAAAAATAACCT+TGG | + | chr8_1:49920414-49920433 | None:intergenic | 25.0% |
| ! | TTCTTATGGAAAAAAAATCG+AGG | - | chr8_1:49920553-49920572 | Msa1198400:CDS | 25.0% |
| !!! | ACACTTTTTAAATCTTTGAG+TGG | + | chr8_1:49921228-49921247 | None:intergenic | 25.0% |
| ! | ATAATTCCATTGCTAGATAT+TGG | - | chr8_1:49921424-49921443 | Msa1198400:CDS | 25.0% |
| ! | TAATTCCATTGCTAGATATT+GGG | - | chr8_1:49921425-49921444 | Msa1198400:CDS | 25.0% |
| !! | CATATTGAAGTTGATTCATA+AGG | + | chr8_1:49921686-49921705 | None:intergenic | 25.0% |
| !! | TAAAGTATTTGAAACAGAAG+AGG | - | chr8_1:49922229-49922248 | Msa1198400:CDS | 25.0% |
| !! | TGTGATTTAACATCATGTTT+TGG | + | chr8_1:49922296-49922315 | None:intergenic | 25.0% |
| !! | TTCATTTTCCAATGAATCAA+TGG | + | chr8_1:49922378-49922397 | None:intergenic | 25.0% |
| ! | TGTGATTTAACGTTATGTTT+CGG | + | chr8_1:49922482-49922501 | None:intergenic | 25.0% |
| !!! | TTCTTCTTTTGTTTGTGAAT+CGG | + | chr8_1:49922594-49922613 | None:intergenic | 25.0% |
| ! | ATAATACAATCAATTGATGC+TGG | - | chr8_1:49922689-49922708 | Msa1198400:CDS | 25.0% |
| ! | TTATAAGGAAATTTCATCTG+AGG | - | chr8_1:49922727-49922746 | Msa1198400:CDS | 25.0% |
| !! | TGTTTCATATTTCTGTATCT+CGG | + | chr8_1:49923191-49923210 | None:intergenic | 25.0% |
| !! | TACAAAAGATTTACTGATTG+AGG | - | chr8_1:49923213-49923232 | Msa1198400:intron | 25.0% |
| ! | GCAAAGTTGAATGAAAAATT+TGG | - | chr8_1:49923613-49923632 | Msa1198400:intron | 25.0% |
| !!! | ATAGACTGTTTTTGTTTCTT+TGG | + | chr8_1:49923724-49923743 | None:intergenic | 25.0% |
| ! | TTGATTGCTTTGTTCTAATG+TGG | + | chr8_1:49920372-49920391 | None:intergenic | 30.0% |
| AACAAAGCAATCAAAATGGA+TGG | - | chr8_1:49920378-49920397 | Msa1198400:CDS | 30.0% | |
| AAGAGAATTGCTCTTTCTTA+TGG | - | chr8_1:49920539-49920558 | Msa1198400:CDS | 30.0% | |
| TATGGAAAAAAAATCGAGGA+AGG | - | chr8_1:49920557-49920576 | Msa1198400:CDS | 30.0% | |
| ! | AAAAACGAGCAGTAAGTTTT+TGG | - | chr8_1:49920593-49920612 | Msa1198400:CDS | 30.0% |
| AGAATCACACATATTAAGTG+TGG | - | chr8_1:49920752-49920771 | Msa1198400:CDS | 30.0% | |
| CCAATATGGTAATAGGTTAT+GGG | + | chr8_1:49920828-49920847 | None:intergenic | 30.0% | |
| ACCAATATGGTAATAGGTTA+TGG | + | chr8_1:49920829-49920848 | None:intergenic | 30.0% | |
| TACACAACCAATATGGTAAT+AGG | + | chr8_1:49920835-49920854 | None:intergenic | 30.0% | |
| TAACAAGTACACAACCAATA+TGG | + | chr8_1:49920842-49920861 | None:intergenic | 30.0% | |
| ! | TTTAAAGCTTCTAGAAGAAG+AGG | - | chr8_1:49920933-49920952 | Msa1198400:CDS | 30.0% |
| ! | TTAAAGCTTCTAGAAGAAGA+GGG | - | chr8_1:49920934-49920953 | Msa1198400:CDS | 30.0% |
| GAGCAGAAATGTATTACAAA+AGG | - | chr8_1:49920974-49920993 | Msa1198400:CDS | 30.0% | |
| TCAACAAAGTTTATTAGCTC+TGG | + | chr8_1:49921003-49921022 | None:intergenic | 30.0% | |
| TTTCTACTCAATCCTGATTT+AGG | + | chr8_1:49921321-49921340 | None:intergenic | 30.0% | |
| !! | TGTTAATGTTATTGATGACG+AGG | - | chr8_1:49921518-49921537 | Msa1198400:CDS | 30.0% |
| ! | ACTTCTTTTACATCTCGTTT+CGG | + | chr8_1:49921735-49921754 | None:intergenic | 30.0% |
| AAAAGAAGTAACAGGAACAA+AGG | - | chr8_1:49921746-49921765 | Msa1198400:CDS | 30.0% | |
| GAAGATTAAAGAACATTTCG+AGG | - | chr8_1:49921830-49921849 | Msa1198400:CDS | 30.0% | |
| ! | TGATGATGCAAAATCCAATA+CGG | - | chr8_1:49922352-49922371 | Msa1198400:CDS | 30.0% |
| ATTGGAAAATGAAGTCCAAA+AGG | - | chr8_1:49922385-49922404 | Msa1198400:CDS | 30.0% | |
| CAATGAATAAATGGACGTAT+TGG | + | chr8_1:49922552-49922571 | None:intergenic | 30.0% | |
| CAATACGTCCATTTATTCAT+TGG | - | chr8_1:49922550-49922569 | Msa1198400:CDS | 30.0% | |
| TCTCTTTCTTTCAACACTAT+AGG | + | chr8_1:49922641-49922660 | None:intergenic | 30.0% | |
| !! | TACTTTTAAAGAAGATTCCG+AGG | - | chr8_1:49922757-49922776 | Msa1198400:CDS | 30.0% |
| !!! | ATGCTTTGCTTTTAGAGTAT+AGG | - | chr8_1:49922804-49922823 | Msa1198400:CDS | 30.0% |
| ! | TCAATAACATGATTTTCTGG+TGG | + | chr8_1:49923046-49923065 | None:intergenic | 30.0% |
| ACCAGAAAATCATGTTATTG+AGG | - | chr8_1:49923045-49923064 | Msa1198400:CDS | 30.0% | |
| ! | TCCTCAATAACATGATTTTC+TGG | + | chr8_1:49923049-49923068 | None:intergenic | 30.0% |
| TTCAAAATGAACTCACACTA+TGG | - | chr8_1:49923338-49923357 | Msa1198400:intron | 30.0% | |
| ! | AGTCTATCTTTTCAATGCAT+AGG | - | chr8_1:49923737-49923756 | Msa1198400:CDS | 30.0% |
| AGGAGAAAAAATAACCTTGG+AGG | + | chr8_1:49920411-49920430 | None:intergenic | 35.0% | |
| ! | AAGAGATTTGCTCTTTCGTA+CGG | - | chr8_1:49920620-49920639 | Msa1198400:CDS | 35.0% |
| CATATTAAGTGTGGAGAAGA+TGG | - | chr8_1:49920761-49920780 | Msa1198400:CDS | 35.0% | |
| CCCATAACCTATTACCATAT+TGG | - | chr8_1:49920825-49920844 | Msa1198400:CDS | 35.0% | |
| CAGAATGAAATGTGCAGATA+TGG | - | chr8_1:49920891-49920910 | Msa1198400:CDS | 35.0% | |
| AATGAAATGTGCAGATATGG+AGG | - | chr8_1:49920894-49920913 | Msa1198400:CDS | 35.0% | |
| TGATAAGTGATCGTACCTAT+CGG | + | chr8_1:49921055-49921074 | None:intergenic | 35.0% | |
| TCCAGATAGAGTTCCTTATA+TGG | - | chr8_1:49921116-49921135 | Msa1198400:CDS | 35.0% | |
| TCCATATAAGGAACTCTATC+TGG | + | chr8_1:49921120-49921139 | None:intergenic | 35.0% | |
| TAGAGTTCCTTATATGGATG+AGG | - | chr8_1:49921122-49921141 | Msa1198400:CDS | 35.0% | |
| ! | AATCCTTCTGGCATTTTTCT+TGG | + | chr8_1:49921174-49921193 | None:intergenic | 35.0% |
| AAATCTTTGAGTGGAGTCTT+TGG | + | chr8_1:49921219-49921238 | None:intergenic | 35.0% | |
| CTTGTTACTGAATTTCCTTG+TGG | + | chr8_1:49921268-49921287 | None:intergenic | 35.0% | |
| AATCCTGATTTAGGAGCTTT+AGG | + | chr8_1:49921312-49921331 | None:intergenic | 35.0% | |
| TAGAAAGCAAGCAATTGAAG+AGG | - | chr8_1:49921335-49921354 | Msa1198400:CDS | 35.0% | |
| AGTTTCCCAATATCTAGCAA+TGG | + | chr8_1:49921433-49921452 | None:intergenic | 35.0% | |
| !! | TAATGTTATTGATGACGAGG+AGG | - | chr8_1:49921521-49921540 | Msa1198400:CDS | 35.0% |
| AAATCGAGTCCAAAAGAGTA+AGG | - | chr8_1:49921637-49921656 | Msa1198400:CDS | 35.0% | |
| AATCGAGTCCAAAAGAGTAA+GGG | - | chr8_1:49921638-49921657 | Msa1198400:CDS | 35.0% | |
| CAAAAGAGTAAGGGAAGTAA+GGG | - | chr8_1:49921647-49921666 | Msa1198400:CDS | 35.0% | |
| CGAGATGTAAAAGAAGTAAC+AGG | - | chr8_1:49921738-49921757 | Msa1198400:CDS | 35.0% | |
| AAAGGATTTGAGTGAAGATG+TGG | - | chr8_1:49921764-49921783 | Msa1198400:CDS | 35.0% | |
| ATTAAAGAACATTTCGAGGC+TGG | - | chr8_1:49921834-49921853 | Msa1198400:CDS | 35.0% | |
| !! | TTTTTCTGCCATTTCTGTCA+CGG | + | chr8_1:49921877-49921896 | None:intergenic | 35.0% |
| AGTTTCTTCTCAAACAGCTT+TGG | - | chr8_1:49921938-49921957 | Msa1198400:CDS | 35.0% | |
| ! | AACTTTCCTTTTCCGTTTCA+AGG | + | chr8_1:49922013-49922032 | None:intergenic | 35.0% |
| TGAAACGGAAAAGGAAAGTT+TGG | - | chr8_1:49922013-49922032 | Msa1198400:CDS | 35.0% | |
| GAACGAGAAACTTAGAGAAA+TGG | - | chr8_1:49922055-49922074 | Msa1198400:CDS | 35.0% | |
| ACTTAGAGAAATGGACGAAA+TGG | - | chr8_1:49922064-49922083 | Msa1198400:CDS | 35.0% | |
| TGTTCTGATCTTCAACAACT+TGG | + | chr8_1:49922112-49922131 | None:intergenic | 35.0% | |
| TCTCTCTGATAAAGTCCAAA+AGG | - | chr8_1:49922178-49922197 | Msa1198400:CDS | 35.0% | |
| TGATGCTGGAAATCATGAAA+AGG | - | chr8_1:49922703-49922722 | Msa1198400:CDS | 35.0% | |
| ! | AAGTCTTTTGCAGAAAAGCT+TGG | - | chr8_1:49922982-49923001 | Msa1198400:CDS | 35.0% |
| TTGGAGGGAAATGAAGAAAT+CGG | - | chr8_1:49923001-49923020 | Msa1198400:CDS | 35.0% | |
| TGTTGAAGAGAAGTTTAGGA+TGG | - | chr8_1:49923105-49923124 | Msa1198400:CDS | 35.0% | |
| ! | GTTGAAGAGAAGTTTAGGAT+GGG | - | chr8_1:49923106-49923125 | Msa1198400:CDS | 35.0% |
| ! | TAGAGGAGAATCTAGAATTC+TGG | - | chr8_1:49923143-49923162 | Msa1198400:CDS | 35.0% |
| TATCGAAGCTCGAAACAAAA+TGG | - | chr8_1:49923236-49923255 | Msa1198400:intron | 35.0% | |
| ACAAAATGGAAAGCAACAGA+AGG | - | chr8_1:49923250-49923269 | Msa1198400:intron | 35.0% | |
| ! | GTTCATTTTGAATCTCTGCA+AGG | + | chr8_1:49923330-49923349 | None:intergenic | 35.0% |
| ATGCTGTTGTTATCTCTTCT+TGG | + | chr8_1:49923426-49923445 | None:intergenic | 35.0% | |
| TATAATGCTGCGAAATTCCA+AGG | - | chr8_1:49923487-49923506 | Msa1198400:intron | 35.0% | |
| TAAATGACCTTAGAGGAACA+CGG | + | chr8_1:49923687-49923706 | None:intergenic | 35.0% | |
| CCAAAGATAAATGACCTTAG+AGG | + | chr8_1:49923694-49923713 | None:intergenic | 35.0% | |
| !! | CCTCTAAGGTCATTTATCTT+TGG | - | chr8_1:49923691-49923710 | Msa1198400:CDS | 35.0% |
| CTGCAAGCAATGCTTATTCA+TGG | - | chr8_1:49920335-49920354 | Msa1198400:CDS | 40.0% | |
| CAAGCAATGCTTATTCATGG+TGG | - | chr8_1:49920338-49920357 | Msa1198400:CDS | 40.0% | |
| CAATGCTTATTCATGGTGGT+GGG | - | chr8_1:49920342-49920361 | Msa1198400:CDS | 40.0% | |
| ! | TTGCTTTGTTCTAATGTGGC+TGG | + | chr8_1:49920368-49920387 | None:intergenic | 40.0% |
| !! | AAAAATCGAGGAAGGTGTCA+TGG | - | chr8_1:49920565-49920584 | Msa1198400:CDS | 40.0% |
| ! | AGAGATTTGCTCTTTCGTAC+GGG | - | chr8_1:49920621-49920640 | Msa1198400:CDS | 40.0% |
| TGGGAACATTTGATGTGTTG+TGG | + | chr8_1:49920809-49920828 | None:intergenic | 40.0% | |
| GACAGAAGCAATTGTGTTGT+TGG | + | chr8_1:49921094-49921113 | None:intergenic | 40.0% | |
| ! | ACGTTTGGTTTCAATCCTTC+TGG | + | chr8_1:49921186-49921205 | None:intergenic | 40.0% |
| ACTCCTAAAGCTCCTAAATC+AGG | - | chr8_1:49921306-49921325 | Msa1198400:CDS | 40.0% | |
| TGCTAGATATTGGGAAACTG+AGG | - | chr8_1:49921434-49921453 | Msa1198400:CDS | 40.0% | |
| GCTAGATATTGGGAAACTGA+GGG | - | chr8_1:49921435-49921454 | Msa1198400:CDS | 40.0% | |
| TCCAATTTGCAAGACGAACT+CGG | - | chr8_1:49921486-49921505 | Msa1198400:CDS | 40.0% | |
| ! | CCTTACTTCCCTTACTCTTT+TGG | + | chr8_1:49921649-49921668 | None:intergenic | 40.0% |
| CCAAAAGAGTAAGGGAAGTA+AGG | - | chr8_1:49921646-49921665 | Msa1198400:CDS | 40.0% | |
| ATCAAGACTACAATGCGCTT+CGG | + | chr8_1:49922156-49922175 | None:intergenic | 40.0% | |
| CAATGAATCAATGGCCGTAT+TGG | + | chr8_1:49922369-49922388 | None:intergenic | 40.0% | |
| !! | CAATACGGCCATTGATTCAT+TGG | - | chr8_1:49922367-49922386 | Msa1198400:CDS | 40.0% |
| !! | TACTGTTGTTGCTTTCTCCT+CGG | + | chr8_1:49922777-49922796 | None:intergenic | 40.0% |
| ACTCTTTGAGTCATCATTGC+AGG | - | chr8_1:49922895-49922914 | Msa1198400:CDS | 40.0% | |
| TCGAATCTCTTCGTCTTTCA+CGG | + | chr8_1:49922945-49922964 | None:intergenic | 40.0% | |
| ! | TCTTTTGCAGAAAAGCTTGG+AGG | - | chr8_1:49922985-49923004 | Msa1198400:CDS | 40.0% |
| ! | CTTTTGCAGAAAAGCTTGGA+GGG | - | chr8_1:49922986-49923005 | Msa1198400:CDS | 40.0% |
| ! | TCAACAGCAGAAGTTGATTC+TGG | + | chr8_1:49923091-49923110 | None:intergenic | 40.0% |
| CTGCTGTTGAAGAGAAGTTT+AGG | - | chr8_1:49923101-49923120 | Msa1198400:CDS | 40.0% | |
| ! | TCTGCAAGGTGCTTATAAAG+TGG | + | chr8_1:49923316-49923335 | None:intergenic | 40.0% |
| AAATGAACTCACACTATGGC+TGG | - | chr8_1:49923342-49923361 | Msa1198400:intron | 40.0% | |
| TCATATTCAAAACCTCGCCT+TGG | + | chr8_1:49923507-49923526 | None:intergenic | 40.0% | |
| TAAAGTTGCTGATGAGCTTC+AGG | - | chr8_1:49923540-49923559 | Msa1198400:intron | 40.0% | |
| TCTTCAACTAGATGCTGAGA+AGG | - | chr8_1:49923585-49923604 | Msa1198400:intron | 40.0% | |
| GCAATGCTTATTCATGGTGG+TGG | - | chr8_1:49920341-49920360 | Msa1198400:CDS | 45.0% | |
| TGGATGGAACAAAACCTCCA+AGG | - | chr8_1:49920394-49920413 | Msa1198400:CDS | 45.0% | |
| ! | GAGATTTGCTCTTTCGTACG+GGG | - | chr8_1:49920622-49920641 | Msa1198400:CDS | 45.0% |
| CATACCGATCTTTAGCCGAT+AGG | - | chr8_1:49921037-49921056 | Msa1198400:CDS | 45.0% | |
| ! | CGTACCTATCGGCTAAAGAT+CGG | + | chr8_1:49921044-49921063 | None:intergenic | 45.0% |
| TCGTCGTCCTCATCCATATA+AGG | + | chr8_1:49921132-49921151 | None:intergenic | 45.0% | |
| ! | CCTTCTGGCATTTTTCTTGG+TGG | + | chr8_1:49921171-49921190 | None:intergenic | 45.0% |
| CCACCAAGAAAAATGCCAGA+AGG | - | chr8_1:49921168-49921187 | Msa1198400:CDS | 45.0% | |
| ! | TTTGGAGCTTTCGGAACGTT+TGG | + | chr8_1:49921201-49921220 | None:intergenic | 45.0% |
| !! | AGTGGAGTCTTTGGAGCTTT+CGG | + | chr8_1:49921210-49921229 | None:intergenic | 45.0% |
| ACCGAGTTCGTCTTGCAAAT+TGG | + | chr8_1:49921490-49921509 | None:intergenic | 45.0% | |
| GCAAACGTGACAATGCTTCT+TGG | + | chr8_1:49921584-49921603 | None:intergenic | 45.0% | |
| GTCACGTTTGCAAGAGAAAC+AGG | - | chr8_1:49921593-49921612 | Msa1198400:CDS | 45.0% | |
| AATCCAATTCGCAAAAGCCG+AGG | - | chr8_1:49921709-49921728 | Msa1198400:CDS | 45.0% | |
| TTTACATCTCGTTTCGGCCT+CGG | + | chr8_1:49921729-49921748 | None:intergenic | 45.0% | |
| ! | TTTCGAGGCTGGCTCAAATT+CGG | - | chr8_1:49921845-49921864 | Msa1198400:CDS | 45.0% |
| ! | GGCTTTAACCGTGACAGAAA+TGG | - | chr8_1:49921866-49921885 | Msa1198400:CDS | 45.0% |
| AACTGATGAACTCCATTCGC+TGG | - | chr8_1:49921980-49921999 | Msa1198400:CDS | 45.0% | |
| TCGCAACCTTGAAACGGAAA+AGG | - | chr8_1:49922004-49922023 | Msa1198400:CDS | 45.0% | |
| ! | CCTCATTCGGTATCACCTTT+TGG | + | chr8_1:49922403-49922422 | None:intergenic | 45.0% |
| CCAAAAGGTGATACCGAATG+AGG | - | chr8_1:49922400-49922419 | Msa1198400:CDS | 45.0% | |
| AAAGGTGATACCGAATGAGG+AGG | - | chr8_1:49922403-49922422 | Msa1198400:CDS | 45.0% | |
| GATACCGAATGAGGAGGATA+AGG | - | chr8_1:49922409-49922428 | Msa1198400:CDS | 45.0% | |
| CTCACCTTATCCTCCTCATT+CGG | + | chr8_1:49922416-49922435 | None:intergenic | 45.0% | |
| !! | TGATTTTCTGGTGGCTGCAA+AGG | + | chr8_1:49923037-49923056 | None:intergenic | 45.0% |
| GAGAAACCAGATGAGACCTT+CGG | - | chr8_1:49923651-49923670 | Msa1198400:intron | 45.0% | |
| CGGCTAAAGATCGGTATGCA+CGG | + | chr8_1:49921035-49921054 | None:intergenic | 50.0% | |
| !! | GGCATTTTTCTTGGTGGCCT+TGG | + | chr8_1:49921165-49921184 | None:intergenic | 50.0% |
| GGAAACTGAGGGACAGATCA+AGG | - | chr8_1:49921446-49921465 | Msa1198400:CDS | 50.0% | |
| ! | TTGCAAGACGAACTCGGTGA+AGG | - | chr8_1:49921492-49921511 | Msa1198400:CDS | 50.0% |
| !! | GCTGGTTCGCAACCTTGAAA+CGG | - | chr8_1:49921998-49922017 | Msa1198400:CDS | 50.0% |
| ! | CCTCGTCTGGTATCACCTTT+TGG | + | chr8_1:49922196-49922215 | None:intergenic | 50.0% |
| CCAAAAGGTGATACCAGACG+AGG | - | chr8_1:49922193-49922212 | Msa1198400:CDS | 50.0% | |
| GATACCAGACGAGGACGATA+TGG | - | chr8_1:49922202-49922221 | Msa1198400:CDS | 50.0% | |
| !! | TTTTCTGGTGGCTGCAAAGG+AGG | + | chr8_1:49923034-49923053 | None:intergenic | 50.0% |
| GGGAATCGACGAACTTCTAG+AGG | - | chr8_1:49923126-49923145 | Msa1198400:CDS | 50.0% | |
| TTGCTGATGAGCTTCAGGCT+GGG | - | chr8_1:49923545-49923564 | Msa1198400:intron | 50.0% | |
| TCGAATCCGAAGGTCTCATC+TGG | + | chr8_1:49923660-49923679 | None:intergenic | 50.0% | |
| ACACGGTTCTTCGAATCCGA+AGG | + | chr8_1:49923670-49923689 | None:intergenic | 50.0% | |
| CGAAGAACCGTGTTCCTCTA+AGG | - | chr8_1:49923677-49923696 | Msa1198400:intron | 50.0% | |
| TAACGACAGCGACAGCCACA+AGG | - | chr8_1:49921250-49921269 | Msa1198400:CDS | 55.0% | |
| ! | TCGCCGTTTGATGGCAGAAG+CGG | - | chr8_1:49921545-49921564 | Msa1198400:CDS | 55.0% |
| GAGCCGCTTCTGCCATCAAA+CGG | + | chr8_1:49921551-49921570 | None:intergenic | 55.0% | |
| CAAGGTTGCGAACCAGCGAA+TGG | + | chr8_1:49921995-49922014 | None:intergenic | 55.0% | |
| CTCACCATATCGTCCTCGTC+TGG | + | chr8_1:49922209-49922228 | None:intergenic | 55.0% | |
| GGAAAACAGCGCGTTGCTGA+AGG | - | chr8_1:49923363-49923382 | Msa1198400:intron | 55.0% | |
| TGCTGCGAAATTCCAAGGCG+AGG | - | chr8_1:49923492-49923511 | Msa1198400:intron | 55.0% | |
| GTTGCTGATGAGCTTCAGGC+TGG | - | chr8_1:49923544-49923563 | Msa1198400:intron | 55.0% | |
| !! | ACGACGACGAAGCATCGCCA+AGG | - | chr8_1:49921145-49921164 | Msa1198400:CDS | 60.0% |
| ! | CGGCCTCGGCTTTTGCGAAT+TGG | + | chr8_1:49921715-49921734 | None:intergenic | 60.0% |
| CGAGGAGGCTCGCCGTTTGA+TGG | - | chr8_1:49921536-49921555 | Msa1198400:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 49920322 | 49923780 | 49920322 | ID=Msa1198400;Name=Msa1198400 |
| chr8_1 | mRNA | 49920322 | 49923780 | 49920322 | ID=Msa1198400-mRNA-1;Parent=Msa1198400;Name=Msa1198400-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|0|0|1|0|0|2|0|988 |
| chr8_1 | exon | 49923687 | 49923780 | 49923687 | ID=Msa1198400-mRNA-1:exon:15677;Parent=Msa1198400-mRNA-1 |
| chr8_1 | exon | 49920322 | 49923194 | 49920322 | ID=Msa1198400-mRNA-1:exon:15676;Parent=Msa1198400-mRNA-1 |
| chr8_1 | CDS | 49923687 | 49923780 | 49923687 | ID=Msa1198400-mRNA-1:cds;Parent=Msa1198400-mRNA-1 |
| chr8_1 | CDS | 49920322 | 49923194 | 49920322 | ID=Msa1198400-mRNA-1:cds;Parent=Msa1198400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
