AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0729590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729590 MtrunA17_Chr5g0422461 98.609 575 6 1 1 573 1 575 0.0 1162
Msa0729590 MtrunA17_Chr7g0245041 39.340 394 198 9 104 463 86 472 7.25e-85 272
Msa0729590 MtrunA17_Chr8g0334531 41.787 414 194 9 105 479 104 509 1.10e-84 273
Msa0729590 MtrunA17_Chr4g0002001 30.374 214 109 7 264 464 118 304 1.92e-15 77.4
Msa0729590 MtrunA17_Chr1g0187371 27.830 212 111 6 267 464 126 309 4.87e-13 70.5
Msa0729590 MtrunA17_Chr7g0245081 37.931 116 57 3 372 484 1 104 1.27e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729590 AT1G68830.1 76.963 573 121 3 1 573 1 562 0.0 905
Msa0729590 AT5G01920.1 41.191 403 193 7 112 477 96 491 2.47e-88 282
Msa0729590 AT5G01920.2 41.191 403 193 7 112 477 96 491 2.47e-88 282
Msa0729590 AT2G38620.4 30.986 213 111 7 263 464 55 242 1.34e-15 77.4
Msa0729590 AT2G38620.2 27.566 341 178 14 149 464 8 304 1.55e-15 78.2

Find 121 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCCATACTCTCGTTTA+AGG 0.134787 5_1:-37234840 None:intergenic
TTGGTGCTTTGTCTTATCTT+TGG 0.201448 5_1:+37230760 Msa0729590:CDS
CCTGGTGTTGTTCTTGCTTT+TGG 0.208005 5_1:+37230741 Msa0729590:CDS
AAGTCTTTGGCCAAGGAAAA+TGG 0.232514 5_1:-37230508 None:intergenic
CTCCTGAATATTGGCTTATA+TGG 0.234852 5_1:+37232372 Msa0729590:CDS
CCATATCATGAAGTTGGTTT+TGG 0.241434 5_1:-37230422 None:intergenic
TGGTGCTTTGTCTTATCTTT+GGG 0.266282 5_1:+37230761 Msa0729590:CDS
CGAGCAACACAACAGGATTA+TGG 0.267381 5_1:+37234223 Msa0729590:CDS
GGTTGTTTAGACCCACTTTC+AGG 0.267666 5_1:+37230841 Msa0729590:CDS
AGGGTTTGATTCTAAGTCTT+TGG 0.275538 5_1:-37230521 None:intergenic
GCCTTTGCCTTGCTTTATAT+CGG 0.279262 5_1:-37234108 None:intergenic
TTGTGCACCAGCCTTCTTCT+TGG 0.291467 5_1:-37234768 None:intergenic
AATATGGTGCTGTAGAAATT+TGG 0.292645 5_1:+37232144 Msa0729590:CDS
ATTGACGGTTGAATTGTATA+AGG 0.298216 5_1:-37233952 None:intergenic
CTTTGTGACTCCAATTCCTT+TGG 0.309079 5_1:-37230457 None:intergenic
CAGGTCGAAACATTGATTCT+TGG 0.309965 5_1:+37232826 Msa0729590:intron
TTGAAGAAGGCGACTGAATA+TGG 0.312551 5_1:+37232128 Msa0729590:CDS
TACAACTTTCATTCCTCTCT+TGG 0.323203 5_1:-37234905 None:intergenic
AAGAGACTACCAACATTATA+TGG 0.329901 5_1:-37232446 None:intergenic
CATTCCTAAAGAGTTTCTTT+TGG 0.331479 5_1:+37233156 Msa0729590:CDS
GGATCCAAAAGAAACTCTTT+AGG 0.332998 5_1:-37233160 None:intergenic
TGGTGGTGGTTCATTGTTTG+AGG 0.346610 5_1:-37230541 None:intergenic
TGTGCACCAGCCTTCTTCTT+GGG 0.348907 5_1:-37234767 None:intergenic
CAAGTGGATTATTCAGCTTA+TGG 0.349059 5_1:+37234255 Msa0729590:CDS
CAAAGAAGACTCCTGAATAT+TGG 0.362523 5_1:+37232363 Msa0729590:CDS
CTGCACTCTCTCCAGTCTTA+TGG 0.363671 5_1:+37233408 Msa0729590:CDS
CCAAAACCAACTTCATGATA+TGG 0.366631 5_1:+37230422 Msa0729590:exon
ATTCAGCTTATGGCAAAATC+AGG 0.382255 5_1:+37234265 Msa0729590:CDS
ACATTCAAAATAATTGATCT+TGG 0.382791 5_1:+37233100 Msa0729590:CDS
CTCCATATAAGCCAATATTC+AGG 0.386303 5_1:-37232374 None:intergenic
TTGGATTTAGATGGCGGAAT+AGG 0.392942 5_1:+37234061 Msa0729590:CDS
CAACACCAACACCTACAAAA+AGG 0.400926 5_1:-37230635 None:intergenic
ACTGTTGCAACCAAAGGAAT+TGG 0.403712 5_1:+37230447 Msa0729590:CDS
TTTGAGCTGTTGGATTTAGA+TGG 0.405059 5_1:+37234052 Msa0729590:CDS
AAGCCTTCTTTGTCAAAGTA+AGG 0.405199 5_1:-37234157 None:intergenic
CTTTGACAAAGAAGGCTTGT+TGG 0.405734 5_1:+37234162 Msa0729590:CDS
GCTACACCTGGTGTTGCTCC+TGG 0.415742 5_1:+37230783 Msa0729590:CDS
GTTGCACGTCAAAATATTAC+AGG 0.416786 5_1:-37235097 None:intergenic
CATCCTTACTTTGACAAAGA+AGG 0.421240 5_1:+37234154 Msa0729590:CDS
GGTGGTGGTTCATTGTTTGA+GGG 0.422407 5_1:-37230540 None:intergenic
ACAACTTTCATTCCTCTCTT+GGG 0.423424 5_1:-37234904 None:intergenic
GGAGAGAGTGCAGTTGCAAC+TGG 0.425506 5_1:-37233398 None:intergenic
TCTTATCTTTGGGCTACACC+TGG 0.433977 5_1:+37230771 Msa0729590:CDS
ATCACCACAAAAGCCATTCA+TGG 0.434279 5_1:+37230582 Msa0729590:CDS
TAGGAGAGGCTTTGAGCTGT+TGG 0.438205 5_1:+37234042 Msa0729590:CDS
TGGCTTATATGGAGGTTTGA+AGG 0.443769 5_1:+37232383 Msa0729590:CDS
AGTCACACCTCTTTAATTGA+CGG 0.447260 5_1:-37233967 None:intergenic
GGCTTGAATGTTACTGTCCC+TGG 0.447608 5_1:+37230723 Msa0729590:CDS
GGCTTATATGGAGGTTTGAA+GGG 0.452837 5_1:+37232384 Msa0729590:CDS
ATTTAGATGGCGGAATAGGA+TGG 0.466045 5_1:+37234065 Msa0729590:CDS
CTCAACTGGTATTGTGCATA+GGG 0.466971 5_1:+37232942 Msa0729590:CDS
CTATTATCAGAGCGTAAGCC+AGG 0.468233 5_1:-37233929 None:intergenic
TTAGACGGTCTTCACTCAAC+TGG 0.479359 5_1:+37232928 Msa0729590:CDS
GGCAAAATCAGGAACAGAAA+AGG 0.483650 5_1:+37234276 Msa0729590:CDS
AAAGCATTTGGTGGAGGAGA+TGG 0.488211 5_1:+37234879 Msa0729590:CDS
TTGACAAACCTTCCTGAAAG+TGG 0.489331 5_1:-37230853 None:intergenic
CTTGCACTGCATGGTGGTGG+TGG 0.491350 5_1:-37230555 None:intergenic
TAGATTGATATGAGTTGAAG+AGG 0.493156 5_1:+37230371 Msa0729590:five_prime_UTR
AATAATAATACCTTTGAAGA+GGG 0.497156 5_1:-37231734 None:intergenic
AATCCATTCAGCACCATGAA+TGG 0.498174 5_1:-37230595 None:intergenic
CTCGATGTGGCGCTGAACTT+AGG 0.499449 5_1:+37234023 Msa0729590:CDS
GGAAATTGTGCCCAAGAAGA+AGG 0.504841 5_1:+37234757 Msa0729590:intron
CTGAATATTGGCTTATATGG+AGG 0.508004 5_1:+37232375 Msa0729590:CDS
CCAAAAGCAAGAACAACACC+AGG 0.508205 5_1:-37230741 None:intergenic
AAGCCATTCATGGTGCTGAA+TGG 0.509311 5_1:+37230592 Msa0729590:CDS
ACTCAACTGGTATTGTGCAT+AGG 0.510063 5_1:+37232941 Msa0729590:CDS
TGGTCTAATATTCCTCCAAA+TGG 0.512216 5_1:+37233571 Msa0729590:CDS
AATTCCTTTGGTTGCAACAG+TGG 0.512321 5_1:-37230445 None:intergenic
AGTTTAACCTGCCATAAGAC+TGG 0.523445 5_1:-37233419 None:intergenic
GTGCTCATAATGTACTGCTC+TGG 0.529003 5_1:-37233350 None:intergenic
ACATTCAAGCCACTAGACTT+AGG 0.534526 5_1:-37230711 None:intergenic
AATTCAACCGTCAATTAAAG+AGG 0.535042 5_1:+37233960 Msa0729590:CDS
CTGTAGATATCAAATCTGTC+AGG 0.543319 5_1:-37233545 None:intergenic
AATCTTGCACTGCATGGTGG+TGG 0.543569 5_1:-37230558 None:intergenic
CAGTGGCCATATCATGAAGT+TGG 0.544516 5_1:-37230428 None:intergenic
TGATTCTAAGTCTTTGGCCA+AGG 0.549378 5_1:-37230515 None:intergenic
CAACTCTTGTTCGCATTAGA+CGG 0.553953 5_1:+37232913 Msa0729590:CDS
CTTCAGCTCTTAAAGTGCAA+AGG 0.564633 5_1:+37234804 Msa0729590:CDS
ATTCACTGAAGCTCAACTAC+AGG 0.570689 5_1:+37234306 Msa0729590:CDS
ACTCTCTCCAGTCTTATGGC+AGG 0.570820 5_1:+37233412 Msa0729590:CDS
CCACACTCCATCACAGTGCA+TGG 0.571570 5_1:-37230663 None:intergenic
ATTTGATACTCACCATTTGG+AGG 0.574767 5_1:-37233583 None:intergenic
ACTGGAGCTGAGGGTGCAGA+TGG 0.578510 5_1:-37233380 None:intergenic
AGATTTGATATCTACAGTAC+TGG 0.579644 5_1:+37233551 Msa0729590:CDS
ATTGTGCCCAAGAAGAAGGC+TGG 0.580227 5_1:+37234761 Msa0729590:CDS
TTTAGATGGCGGAATAGGAT+GGG 0.582248 5_1:+37234066 Msa0729590:CDS
AAAACAGGAAAAGCATTTGG+TGG 0.582619 5_1:+37234870 Msa0729590:CDS
GAGCTGTTGGATTTAGATGG+CGG 0.583483 5_1:+37234055 Msa0729590:CDS
ACAGGAAAAGCATTTGGTGG+AGG 0.584401 5_1:+37234873 Msa0729590:CDS
CGAAACATTGATTCTTGGCG+AGG 0.584582 5_1:+37232831 Msa0729590:CDS
TGGGCTTCCATGCACTGTGA+TGG 0.585692 5_1:+37230656 Msa0729590:CDS
GTGATGAATCTTGCACTGCA+TGG 0.588583 5_1:-37230564 None:intergenic
ATGGCCACTGTTGCAACCAA+AGG 0.589790 5_1:+37230441 Msa0729590:CDS
TGACAAACCTTCCTGAAAGT+GGG 0.590710 5_1:-37230852 None:intergenic
GTGACTATGACTTGGTTGCA+TGG 0.590726 5_1:+37233984 Msa0729590:CDS
TGCAGTTGCAACTGGAGCTG+AGG 0.594722 5_1:-37233390 None:intergenic
CAATAATAATACCTTTGAAG+AGG 0.595715 5_1:-37231735 None:intergenic
AGGTGACTTAGTCTTGAAGA+AGG 0.596316 5_1:+37232115 Msa0729590:CDS
CATAAGCTGAATAATCCACT+TGG 0.599152 5_1:-37234254 None:intergenic
GCTTATATGGAGGTTTGAAG+GGG 0.600363 5_1:+37232385 Msa0729590:CDS
ACTCTGCAATAGATCAGCTA+AGG 0.600527 5_1:-37232414 None:intergenic
AGCACTCTTCCTAAGTCTAG+TGG 0.608042 5_1:+37230702 Msa0729590:CDS
CCATGCACTGTGATGGAGTG+TGG 0.608377 5_1:+37230663 Msa0729590:CDS
AAAATCAGGAACAGAAAAGG+AGG 0.609977 5_1:+37234279 Msa0729590:CDS
GCTGCTACAGACTTGCGAGT+TGG 0.612827 5_1:+37233124 Msa0729590:CDS
GTTTAGACCCACTTTCAGGA+AGG 0.613422 5_1:+37230845 Msa0729590:CDS
CAATGGTCCGATATAAAGCA+AGG 0.622058 5_1:+37234101 Msa0729590:CDS
TCCGATATAAAGCAAGGCAA+AGG 0.623569 5_1:+37234107 Msa0729590:CDS
TATCTATCATGCAAAATCTG+AGG 0.626573 5_1:+37234188 Msa0729590:CDS
GCAGTTGCAACTGGAGCTGA+GGG 0.634177 5_1:-37233389 None:intergenic
TCAGGAACAGAAAAGGAGGG+TGG 0.634221 5_1:+37234283 Msa0729590:CDS
TCAGAGAAAATAATGTTCTG+CGG 0.642515 5_1:-37232973 None:intergenic
CAAAAGCAAGAACAACACCA+GGG 0.646990 5_1:-37230740 None:intergenic
GAGGAGATGGATCCCAAGAG+AGG 0.662184 5_1:+37234892 Msa0729590:CDS
AAAGAGGTGTGACTATGACT+TGG 0.672074 5_1:+37233976 Msa0729590:CDS
ATGAATCTTGCACTGCATGG+TGG 0.677136 5_1:-37230561 None:intergenic
AAAACTGTGGAGCCTCGATG+TGG 0.677269 5_1:+37234010 Msa0729590:CDS
TGTGGCGCTGAACTTAGGAG+AGG 0.694905 5_1:+37234028 Msa0729590:CDS
AAATCAGGAACAGAAAAGGA+GGG 0.696429 5_1:+37234280 Msa0729590:CDS
ATTATGGAGAAGCTGCCAAG+TGG 0.696799 5_1:+37234239 Msa0729590:CDS
CTAAGTTCAGCGCCACATCG+AGG 0.705406 5_1:-37234022 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATATATTATATTTAT+AGG + chr5_1:37231849-37231868 Msa0729590:intron 0.0%
!!! ATTTTTATGAAATAGTATTT+CGG + chr5_1:37231591-37231610 Msa0729590:intron 10.0%
!! TATTATTATTGTTATGAATA+TGG + chr5_1:37231747-37231766 Msa0729590:intron 10.0%
!!! AAACTTTGTTATAAAATTTA+AGG - chr5_1:37232519-37232538 None:intergenic 10.0%
!!! TTAATTTTTTTTATTAACCA+TGG + chr5_1:37233063-37233082 Msa0729590:intron 10.0%
!!! AATCAAAAGAATTTTTTTAT+CGG + chr5_1:37234553-37234572 Msa0729590:intron 10.0%
!! AAAAATATTGAAAAGAAAAA+GGG - chr5_1:37234943-37234962 None:intergenic 10.0%
!!! TATGGATTGAAAATAATTTA+GGG - chr5_1:37231385-37231404 None:intergenic 15.0%
!!! TTATGGATTGAAAATAATTT+AGG - chr5_1:37231386-37231405 None:intergenic 15.0%
!! TCTGATACTATATTAAAATT+TGG + chr5_1:37231434-37231453 Msa0729590:intron 15.0%
!! AATAGAATAGAGATAATTTA+TGG + chr5_1:37231501-37231520 Msa0729590:intron 15.0%
!!! TTTTTATGAAATAGTATTTC+GGG + chr5_1:37231592-37231611 Msa0729590:intron 15.0%
!!! GTAAACTATTTTAATGTTTT+TGG + chr5_1:37231875-37231894 Msa0729590:intron 15.0%
!! GAGAATCTATAAATAATTAA+TGG - chr5_1:37231961-37231980 None:intergenic 15.0%
!! ATTATTTATAGATTCTCTTA+AGG + chr5_1:37231964-37231983 Msa0729590:intron 15.0%
!! AAATTTAAATAGAACTTTCT+CGG - chr5_1:37232736-37232755 None:intergenic 15.0%
!! AAAAAAATTAAAGCATAACT+TGG - chr5_1:37233054-37233073 None:intergenic 15.0%
!! TGATTAATAGATACATTATT+AGG + chr5_1:37233245-37233264 Msa0729590:intron 15.0%
!!! TTTTGTAGTTAAAATGATTA+TGG + chr5_1:37233738-37233757 Msa0729590:intron 15.0%
!!! CAATTTTGATCATTTTATAT+AGG + chr5_1:37233901-37233920 Msa0729590:intron 15.0%
!!! ATCAAAAGAATTTTTTTATC+GGG + chr5_1:37234554-37234573 Msa0729590:intron 15.0%
!!! AAATAAACAAGTTTTGATTT+TGG - chr5_1:37234581-37234600 None:intergenic 15.0%
!!! AAATAAGCAAATTTTCATTT+TGG - chr5_1:37234659-37234678 None:intergenic 15.0%
!! AAAATATTGAAAAGAAAAAG+GGG - chr5_1:37234942-37234961 None:intergenic 15.0%
!! CAAAAATATTGAAAAGAAAA+AGG - chr5_1:37234944-37234963 None:intergenic 15.0%
!!! ATTTATGTAACATTTTTTGA+AGG + chr5_1:37235123-37235142 Msa0729590:three_prime_UTR 15.0%
!!! TTATTTTTACTAGCTTATAG+AGG - chr5_1:37231252-37231271 None:intergenic 20.0%
!!! AATAATAATACCTTTGAAGA+GGG - chr5_1:37231737-37231756 None:intergenic 20.0%
!!! TTATGACTTATGATACTTTT+TGG + chr5_1:37232077-37232096 Msa0729590:intron 20.0%
!! ACTCGATAAATTAAAAATGT+CGG + chr5_1:37232485-37232504 Msa0729590:intron 20.0%
!!! ATTTAAATTTTATGCTTCCT+TGG + chr5_1:37232746-37232765 Msa0729590:intron 20.0%
!! ACATTCAAAATAATTGATCT+TGG + chr5_1:37233100-37233119 Msa0729590:CDS 20.0%
!! ATTTCCATGATTAGAAATAT+AGG - chr5_1:37233815-37233834 None:intergenic 20.0%
!! AATCAATTATATGATCAAAC+TGG + chr5_1:37233862-37233881 Msa0729590:intron 20.0%
!!! ACTGAAATTATTTTTTTTGC+TGG + chr5_1:37234351-37234370 Msa0729590:intron 20.0%
!!! TCAAAACTTGTTTATTTTAG+TGG + chr5_1:37234584-37234603 Msa0729590:intron 20.0%
!! CAAAAAATGTTACATAAATG+TGG - chr5_1:37235122-37235141 None:intergenic 20.0%
!!! AGGAAAATGGATTTTTTGTT+GGG - chr5_1:37230498-37230517 None:intergenic 25.0%
!!! AAGGAAAATGGATTTTTTGT+TGG - chr5_1:37230499-37230518 None:intergenic 25.0%
!! AACAAAAAATCCATTTTCCT+TGG + chr5_1:37230498-37230517 Msa0729590:CDS 25.0%
! ACAAACATATCAAAAAAACC+AGG - chr5_1:37230804-37230823 None:intergenic 25.0%
! AGCTCATCAAACAATTTATT+AGG - chr5_1:37230934-37230953 None:intergenic 25.0%
! AAGCTATAAACTCAAATTTG+TGG + chr5_1:37231336-37231355 Msa0729590:intron 25.0%
!! AAATAATTTAGGGCCTATTT+AGG - chr5_1:37231375-37231394 None:intergenic 25.0%
! AGATAATTTATGGACCAAAT+AGG + chr5_1:37231511-37231530 Msa0729590:intron 25.0%
!! AATTTTCACTCTTTCCTATT+TGG - chr5_1:37231528-37231547 None:intergenic 25.0%
! AAATTTAGTGACGAAATTGA+AGG + chr5_1:37231543-37231562 Msa0729590:intron 25.0%
!! CAATAATAATACCTTTGAAG+AGG - chr5_1:37231738-37231757 None:intergenic 25.0%
!!! TTTTGTTTATGGTTTTCTTG+AGG + chr5_1:37232211-37232230 Msa0729590:CDS 25.0%
!! AGAGATTTTCCATATAATGT+TGG + chr5_1:37232437-37232456 Msa0729590:intron 25.0%
! AAGACTGATAATTAATTCAC+TGG - chr5_1:37232547-37232566 None:intergenic 25.0%
! TTAGAGATCATAAATAACCA+AGG - chr5_1:37232766-37232785 None:intergenic 25.0%
! TGGTTATTTATGATCTCTAA+AGG + chr5_1:37232766-37232785 Msa0729590:intron 25.0%
!! ACATGTGCTATTATTAATGA+TGG - chr5_1:37233460-37233479 None:intergenic 25.0%
! ATTATTTGATACTCACCATT+TGG - chr5_1:37233589-37233608 None:intergenic 25.0%
!! GTTTCCTATATTTCTAATCA+TGG + chr5_1:37233808-37233827 Msa0729590:intron 25.0%
! CATGGAAATCATTTAAACAA+TGG + chr5_1:37233826-37233845 Msa0729590:intron 25.0%
! AAAAGGGTTAAATATGTTTC+TGG - chr5_1:37234611-37234630 None:intergenic 25.0%
! TAGTGACTATGACAATAAAA+GGG - chr5_1:37234627-37234646 None:intergenic 25.0%
! ATAGTGACTATGACAATAAA+AGG - chr5_1:37234628-37234647 None:intergenic 25.0%
!!! TGTAACATTTTTTGAAGGTA+TGG + chr5_1:37235128-37235147 Msa0729590:three_prime_UTR 25.0%
! TAGATTGATATGAGTTGAAG+AGG + chr5_1:37230371-37230390 Msa0729590:five_prime_UTR 30.0%
!!! GGAAAATGGATTTTTTGTTG+GGG - chr5_1:37230497-37230516 None:intergenic 30.0%
!! TTGTTCTTGCTTTTGTTGAA+AGG + chr5_1:37230820-37230839 Msa0729590:CDS 30.0%
! TCTTATAAGCTAGCTTATAG+TGG + chr5_1:37230997-37231016 Msa0729590:intron 30.0%
!! TTTTTCAATTAGGGCTACAA+AGG + chr5_1:37231170-37231189 Msa0729590:intron 30.0%
!! TACTAGCTTATAGAGGTTTT+TGG - chr5_1:37231245-37231264 None:intergenic 30.0%
TATAAAGTCATGAGAAAGTG+CGG + chr5_1:37231274-37231293 Msa0729590:intron 30.0%
CTTGCAAATAGATCCTAAAT+AGG + chr5_1:37231359-37231378 Msa0729590:intron 30.0%
!! CTATTTGTTATTGCTGAGAA+TGG + chr5_1:37231623-37231642 Msa0729590:intron 30.0%
TTGCTGAGAATGGTTTATTA+TGG + chr5_1:37231633-37231652 Msa0729590:intron 30.0%
TTCTTAGATATGATGAAGTC+AGG + chr5_1:37231784-37231803 Msa0729590:intron 30.0%
TAAAATGAAGAACCAACTTG+TGG + chr5_1:37231999-37232018 Msa0729590:intron 30.0%
AAAATGAAGAACCAACTTGT+GGG + chr5_1:37232000-37232019 Msa0729590:intron 30.0%
TGTGTTTGTGAAATTTCAGT+TGG + chr5_1:37232030-37232049 Msa0729590:intron 30.0%
!!! TGATACTTTTTGGTTCTCAT+TGG + chr5_1:37232087-37232106 Msa0729590:intron 30.0%
!! AATATGGTGCTGTAGAAATT+TGG + chr5_1:37232144-37232163 Msa0729590:CDS 30.0%
! TTTATGGTTTTCTTGAGGTA+AGG + chr5_1:37232216-37232235 Msa0729590:intron 30.0%
! TTTCTTGAGGTAAGGATTTT+TGG + chr5_1:37232224-37232243 Msa0729590:intron 30.0%
! TTCTTGAGGTAAGGATTTTT+GGG + chr5_1:37232225-37232244 Msa0729590:intron 30.0%
! TTGTCATTTACTATTTGCAG+AGG + chr5_1:37232336-37232355 Msa0729590:intron 30.0%
AAGAGACTACCAACATTATA+TGG - chr5_1:37232449-37232468 None:intergenic 30.0%
TAAGCGTGAAATAAGTGTTT+CGG - chr5_1:37232691-37232710 None:intergenic 30.0%
! ATGTTTCGACCTGAAATTTT+TGG - chr5_1:37232819-37232838 None:intergenic 30.0%
TCAGAGAAAATAATGTTCTG+CGG - chr5_1:37232976-37232995 None:intergenic 30.0%
! CAGAACATTATTTTCTCTGA+AGG + chr5_1:37232976-37232995 Msa0729590:CDS 30.0%
! TTTTTATTAACCATGGTCTC+AGG + chr5_1:37233070-37233089 Msa0729590:intron 30.0%
! TTTTATTAACCATGGTCTCA+GGG + chr5_1:37233071-37233090 Msa0729590:intron 30.0%
! CATTCCTAAAGAGTTTCTTT+TGG + chr5_1:37233156-37233175 Msa0729590:CDS 30.0%
TAAACACAAACTTTGATCAG+TGG - chr5_1:37233216-37233235 None:intergenic 30.0%
! GTGCTATTATTAATGATGGA+TGG - chr5_1:37233456-37233475 None:intergenic 30.0%
AGATTTGATATCTACAGTAC+TGG + chr5_1:37233551-37233570 Msa0729590:CDS 30.0%
! CATTTTATATAGGCATTTCC+TGG + chr5_1:37233911-37233930 Msa0729590:intron 30.0%
ATTGACGGTTGAATTGTATA+AGG - chr5_1:37233955-37233974 None:intergenic 30.0%
AATTCAACCGTCAATTAAAG+AGG + chr5_1:37233960-37233979 Msa0729590:CDS 30.0%
TATCTATCATGCAAAATCTG+AGG + chr5_1:37234188-37234207 Msa0729590:CDS 30.0%
GTATCTAAAGAAATGACATG+TGG - chr5_1:37234392-37234411 None:intergenic 30.0%
AGCCTCTTGTATAAAAAACA+GGG - chr5_1:37234449-37234468 None:intergenic 30.0%
! TTTTCATCCCTCCAAAAATA+GGG - chr5_1:37234535-37234554 None:intergenic 30.0%
! ATTTTCATCCCTCCAAAAAT+AGG - chr5_1:37234536-37234555 None:intergenic 30.0%
ATTGTCATAGTCACTATCTT+AGG + chr5_1:37234631-37234650 Msa0729590:intron 30.0%
TTGTCATAGTCACTATCTTA+GGG + chr5_1:37234632-37234651 Msa0729590:intron 30.0%
AAAAGGGTTGAATATGTTTG+TGG - chr5_1:37234689-37234708 None:intergenic 30.0%
AACAACTATGAGGGAAAAAA+GGG - chr5_1:37234705-37234724 None:intergenic 30.0%
!! AGCAAGAAATGATGGATAAA+TGG - chr5_1:37234732-37234751 None:intergenic 30.0%
AAAAACCTTAAACGAGAGTA+TGG + chr5_1:37234835-37234854 Msa0729590:CDS 30.0%
!! CCATATCATGAAGTTGGTTT+TGG - chr5_1:37230425-37230444 None:intergenic 35.0%
CCAAAACCAACTTCATGATA+TGG + chr5_1:37230422-37230441 Msa0729590:exon 35.0%
!!! GATTTTTTGTTGGGGTTGTA+GGG - chr5_1:37230489-37230508 None:intergenic 35.0%
AGGGTTTGATTCTAAGTCTT+TGG - chr5_1:37230524-37230543 None:intergenic 35.0%
!!! TTTTTGTAGGTGTTGGTGTT+GGG + chr5_1:37230637-37230656 Msa0729590:CDS 35.0%
! TTGGTGCTTTGTCTTATCTT+TGG + chr5_1:37230760-37230779 Msa0729590:CDS 35.0%
TGGTGCTTTGTCTTATCTTT+GGG + chr5_1:37230761-37230780 Msa0729590:CDS 35.0%
! ATAAAGTCATGAGAAAGTGC+GGG + chr5_1:37231275-37231294 Msa0729590:intron 35.0%
! GTTTATCAAGCCTGTTTTGT+CGG - chr5_1:37231477-37231496 None:intergenic 35.0%
TGAGAATGGTTTATTATGGC+AGG + chr5_1:37231637-37231656 Msa0729590:intron 35.0%
!!! TGGCAGGATGATTTTGTTTT+AGG + chr5_1:37231653-37231672 Msa0729590:intron 35.0%
!!! GGCAGGATGATTTTGTTTTA+GGG + chr5_1:37231654-37231673 Msa0729590:intron 35.0%
!!! TTTTGTTTTAGGGAAGAAGC+TGG + chr5_1:37231664-37231683 Msa0729590:CDS 35.0%
!!! TTTGTTTTAGGGAAGAAGCT+GGG + chr5_1:37231665-37231684 Msa0729590:CDS 35.0%
! TGTGAAATTTCAGTTGGTCT+TGG + chr5_1:37232036-37232055 Msa0729590:intron 35.0%
!! GTGAAATTTCAGTTGGTCTT+GGG + chr5_1:37232037-37232056 Msa0729590:intron 35.0%
!!! ACTTTTTGGTTCTCATTGGA+AGG + chr5_1:37232091-37232110 Msa0729590:intron 35.0%
!! AGCTGTGCAGATTTTGTTTA+TGG + chr5_1:37232200-37232219 Msa0729590:CDS 35.0%
! TCTTGAGGTAAGGATTTTTG+GGG + chr5_1:37232226-37232245 Msa0729590:intron 35.0%
GTATCACTGTCTTACTTGTT+TGG + chr5_1:37232248-37232267 Msa0729590:intron 35.0%
TACTTGTTTGGAGAAATCGA+AGG + chr5_1:37232260-37232279 Msa0729590:intron 35.0%
CAAAGAAGACTCCTGAATAT+TGG + chr5_1:37232363-37232382 Msa0729590:CDS 35.0%
!! CTCCTGAATATTGGCTTATA+TGG + chr5_1:37232372-37232391 Msa0729590:CDS 35.0%
CTCCATATAAGCCAATATTC+AGG - chr5_1:37232377-37232396 None:intergenic 35.0%
!! CTGAATATTGGCTTATATGG+AGG + chr5_1:37232375-37232394 Msa0729590:CDS 35.0%
TTATCAGTCTTTCATCTGTG+AGG + chr5_1:37232556-37232575 Msa0729590:intron 35.0%
TTATCAGTCTTTCATCTGTG+AGG + chr5_1:37232556-37232575 Msa0729590:intron 35.0%
! GAGGTACAAGATTTTCCAAA+GGG + chr5_1:37232850-37232869 Msa0729590:CDS 35.0%
! ACAAGATTTTCCAAAGGGAT+TGG + chr5_1:37232855-37232874 Msa0729590:CDS 35.0%
! TTTTCTCTTTCCAATCCCTT+TGG - chr5_1:37232868-37232887 None:intergenic 35.0%
GGATCCAAAAGAAACTCTTT+AGG - chr5_1:37233163-37233182 None:intergenic 35.0%
! AAGAGTTTCTTTTGGATCCA+AGG + chr5_1:37233164-37233183 Msa0729590:CDS 35.0%
AAAGTCATCTGAAGATACCT+TGG - chr5_1:37233184-37233203 None:intergenic 35.0%
CTTTCTAACTTGAGTCATCA+AGG - chr5_1:37233273-37233292 None:intergenic 35.0%
AAGGATTGTACACAACATGA+GGG - chr5_1:37233311-37233330 None:intergenic 35.0%
CTGTAGATATCAAATCTGTC+AGG - chr5_1:37233548-37233567 None:intergenic 35.0%
TGGTCTAATATTCCTCCAAA+TGG + chr5_1:37233571-37233590 Msa0729590:CDS 35.0%
ATTTGATACTCACCATTTGG+AGG - chr5_1:37233586-37233605 None:intergenic 35.0%
AGTCACACCTCTTTAATTGA+CGG - chr5_1:37233970-37233989 None:intergenic 35.0%
TTTGAGCTGTTGGATTTAGA+TGG + chr5_1:37234052-37234071 Msa0729590:CDS 35.0%
CATCCTTACTTTGACAAAGA+AGG + chr5_1:37234154-37234173 Msa0729590:CDS 35.0%
AAGCCTTCTTTGTCAAAGTA+AGG - chr5_1:37234160-37234179 None:intergenic 35.0%
CATAAGCTGAATAATCCACT+TGG - chr5_1:37234257-37234276 None:intergenic 35.0%
!! CAAGTGGATTATTCAGCTTA+TGG + chr5_1:37234255-37234274 Msa0729590:CDS 35.0%
ATTCAGCTTATGGCAAAATC+AGG + chr5_1:37234265-37234284 Msa0729590:CDS 35.0%
AAAATCAGGAACAGAAAAGG+AGG + chr5_1:37234279-37234298 Msa0729590:CDS 35.0%
AAATCAGGAACAGAAAAGGA+GGG + chr5_1:37234280-37234299 Msa0729590:CDS 35.0%
CTTGTATAAAAAACAGGGTG+AGG - chr5_1:37234444-37234463 None:intergenic 35.0%
!!! CACCCTGTTTTTTATACAAG+AGG + chr5_1:37234444-37234463 Msa0729590:intron 35.0%
CAGCCTCTTGTATAAAAAAC+AGG - chr5_1:37234450-37234469 None:intergenic 35.0%
AAAGTTGTTACGTGACTGAA+AGG - chr5_1:37234495-37234514 None:intergenic 35.0%
TGTCATAGTCACTATCTTAG+GGG + chr5_1:37234633-37234652 Msa0729590:intron 35.0%
CAACAACTATGAGGGAAAAA+AGG - chr5_1:37234706-37234725 None:intergenic 35.0%
! AATGGTGTCAACAACTATGA+GGG - chr5_1:37234714-37234733 None:intergenic 35.0%
! AAATGGTGTCAACAACTATG+AGG - chr5_1:37234715-37234734 None:intergenic 35.0%
TCCATCATTTCTTGCTTTGT+AGG + chr5_1:37234736-37234755 Msa0729590:intron 35.0%
TCCTACAAAGCAAGAAATGA+TGG - chr5_1:37234740-37234759 None:intergenic 35.0%
!! GCAAAAACAGGAAAAGCATT+TGG + chr5_1:37234867-37234886 Msa0729590:CDS 35.0%
!! AAAACAGGAAAAGCATTTGG+TGG + chr5_1:37234870-37234889 Msa0729590:CDS 35.0%
ACAACTTTCATTCCTCTCTT+GGG - chr5_1:37234907-37234926 None:intergenic 35.0%
TACAACTTTCATTCCTCTCT+TGG - chr5_1:37234908-37234927 None:intergenic 35.0%
GTTGCACGTCAAAATATTAC+AGG - chr5_1:37235100-37235119 None:intergenic 35.0%
!!! TGAAGTTGGTTTTGGCTTGT+GGG - chr5_1:37230417-37230436 None:intergenic 40.0%
!!! ATGAAGTTGGTTTTGGCTTG+TGG - chr5_1:37230418-37230437 None:intergenic 40.0%
AATTCCTTTGGTTGCAACAG+TGG - chr5_1:37230448-37230467 None:intergenic 40.0%
ACTGTTGCAACCAAAGGAAT+TGG + chr5_1:37230447-37230466 Msa0729590:CDS 40.0%
CTTTGTGACTCCAATTCCTT+TGG - chr5_1:37230460-37230479 None:intergenic 40.0%
!!! GGATTTTTTGTTGGGGTTGT+AGG - chr5_1:37230490-37230509 None:intergenic 40.0%
AAGTCTTTGGCCAAGGAAAA+TGG - chr5_1:37230511-37230530 None:intergenic 40.0%
TGATTCTAAGTCTTTGGCCA+AGG - chr5_1:37230518-37230537 None:intergenic 40.0%
ATCACCACAAAAGCCATTCA+TGG + chr5_1:37230582-37230601 Msa0729590:CDS 40.0%
AATCCATTCAGCACCATGAA+TGG - chr5_1:37230598-37230617 None:intergenic 40.0%
! TCAGCTCACAACCTTTTTGT+AGG + chr5_1:37230624-37230643 Msa0729590:CDS 40.0%
! CACAACCTTTTTGTAGGTGT+TGG + chr5_1:37230630-37230649 Msa0729590:CDS 40.0%
CAACACCAACACCTACAAAA+AGG - chr5_1:37230638-37230657 None:intergenic 40.0%
!!! CTTTTTGTAGGTGTTGGTGT+TGG + chr5_1:37230636-37230655 Msa0729590:CDS 40.0%
ACATTCAAGCCACTAGACTT+AGG - chr5_1:37230714-37230733 None:intergenic 40.0%
CAAAAGCAAGAACAACACCA+GGG - chr5_1:37230743-37230762 None:intergenic 40.0%
TGACAAACCTTCCTGAAAGT+GGG - chr5_1:37230855-37230874 None:intergenic 40.0%
TTGACAAACCTTCCTGAAAG+TGG - chr5_1:37230856-37230875 None:intergenic 40.0%
! CAGATTGAGCTTGAAGTGTT+TGG + chr5_1:37231077-37231096 Msa0729590:intron 40.0%
!!! TTGTTTTAGGGAAGAAGCTG+GGG + chr5_1:37231666-37231685 Msa0729590:CDS 40.0%
!! TACCTTTGAAGAGGGCTTTT+TGG - chr5_1:37231729-37231748 None:intergenic 40.0%
!! TTTGGTTCTCATTGGAAGGA+AGG + chr5_1:37232095-37232114 Msa0729590:intron 40.0%
!! AGGTGACTTAGTCTTGAAGA+AGG + chr5_1:37232115-37232134 Msa0729590:CDS 40.0%
TTGAAGAAGGCGACTGAATA+TGG + chr5_1:37232128-37232147 Msa0729590:CDS 40.0%
TGGCTTATATGGAGGTTTGA+AGG + chr5_1:37232383-37232402 Msa0729590:CDS 40.0%
GGCTTATATGGAGGTTTGAA+GGG + chr5_1:37232384-37232403 Msa0729590:CDS 40.0%
GCTTATATGGAGGTTTGAAG+GGG + chr5_1:37232385-37232404 Msa0729590:CDS 40.0%
ACTCTGCAATAGATCAGCTA+AGG - chr5_1:37232417-37232436 None:intergenic 40.0%
!!! AAATTTTTGGCACCATCACC+GGG - chr5_1:37232806-37232825 None:intergenic 40.0%
!!! GAAATTTTTGGCACCATCAC+CGG - chr5_1:37232807-37232826 None:intergenic 40.0%
! GTGATGGTGCCAAAAATTTC+AGG + chr5_1:37232807-37232826 Msa0729590:intron 40.0%
!! CAGGTCGAAACATTGATTCT+TGG + chr5_1:37232826-37232845 Msa0729590:intron 40.0%
! CGAGGTACAAGATTTTCCAA+AGG + chr5_1:37232849-37232868 Msa0729590:CDS 40.0%
CAACTCTTGTTCGCATTAGA+CGG + chr5_1:37232913-37232932 Msa0729590:CDS 40.0%
ACTCAACTGGTATTGTGCAT+AGG + chr5_1:37232941-37232960 Msa0729590:CDS 40.0%
CTCAACTGGTATTGTGCATA+GGG + chr5_1:37232942-37232961 Msa0729590:CDS 40.0%
CAAACTTTGATCAGTGGAGT+AGG - chr5_1:37233210-37233229 None:intergenic 40.0%
GAAGGATTGTACACAACATG+AGG - chr5_1:37233312-37233331 None:intergenic 40.0%
! TGCAGCATATCTGAAATGGA+AGG - chr5_1:37233330-37233349 None:intergenic 40.0%
AGTTTAACCTGCCATAAGAC+TGG - chr5_1:37233422-37233441 None:intergenic 40.0%
! CAGTCTTGTATTTGTCAACG+AGG - chr5_1:37233707-37233726 None:intergenic 40.0%
! AAAGAGGTGTGACTATGACT+TGG + chr5_1:37233976-37233995 Msa0729590:CDS 40.0%
!! TTGGATTTAGATGGCGGAAT+AGG + chr5_1:37234061-37234080 Msa0729590:CDS 40.0%
!! ATTTAGATGGCGGAATAGGA+TGG + chr5_1:37234065-37234084 Msa0729590:CDS 40.0%
!! TTTAGATGGCGGAATAGGAT+GGG + chr5_1:37234066-37234085 Msa0729590:CDS 40.0%
! ATGGGAACTTTTGACGTCAA+TGG + chr5_1:37234084-37234103 Msa0729590:CDS 40.0%
CAATGGTCCGATATAAAGCA+AGG + chr5_1:37234101-37234120 Msa0729590:CDS 40.0%
TCCGATATAAAGCAAGGCAA+AGG + chr5_1:37234107-37234126 Msa0729590:CDS 40.0%
GCCTTTGCCTTGCTTTATAT+CGG - chr5_1:37234111-37234130 None:intergenic 40.0%
CTTTGACAAAGAAGGCTTGT+TGG + chr5_1:37234162-37234181 Msa0729590:CDS 40.0%
!!! GTTTTTTCGAGCAACACAAC+AGG + chr5_1:37234216-37234235 Msa0729590:CDS 40.0%
GGCAAAATCAGGAACAGAAA+AGG + chr5_1:37234276-37234295 Msa0729590:CDS 40.0%
ATTCACTGAAGCTCAACTAC+AGG + chr5_1:37234306-37234325 Msa0729590:CDS 40.0%
! TTATACAAGAGGCTGTTTCC+AGG + chr5_1:37234455-37234474 Msa0729590:intron 40.0%
CTTCAGCTCTTAAAGTGCAA+AGG + chr5_1:37234804-37234823 Msa0729590:CDS 40.0%
CTCATCCATACTCTCGTTTA+AGG - chr5_1:37234843-37234862 None:intergenic 40.0%
!!! GTTTTGGCTTGTGGGAGAAA+TGG - chr5_1:37230409-37230428 None:intergenic 45.0%
CAGTGGCCATATCATGAAGT+TGG - chr5_1:37230431-37230450 None:intergenic 45.0%
! TTTTGTTGGGGTTGTAGGGA+TGG - chr5_1:37230485-37230504 None:intergenic 45.0%
! GGTGGTGGTTCATTGTTTGA+GGG - chr5_1:37230543-37230562 None:intergenic 45.0%
!! TGGTGGTGGTTCATTGTTTG+AGG - chr5_1:37230544-37230563 None:intergenic 45.0%
ATGAATCTTGCACTGCATGG+TGG - chr5_1:37230564-37230583 None:intergenic 45.0%
GTGATGAATCTTGCACTGCA+TGG - chr5_1:37230567-37230586 None:intergenic 45.0%
! AGCACCATGAATGGCTTTTG+TGG - chr5_1:37230589-37230608 None:intergenic 45.0%
! AAGCCATTCATGGTGCTGAA+TGG + chr5_1:37230592-37230611 Msa0729590:CDS 45.0%
AGCACTCTTCCTAAGTCTAG+TGG + chr5_1:37230702-37230721 Msa0729590:CDS 45.0%
CCAAAAGCAAGAACAACACC+AGG - chr5_1:37230744-37230763 None:intergenic 45.0%
!!! CCTGGTGTTGTTCTTGCTTT+TGG + chr5_1:37230741-37230760 Msa0729590:CDS 45.0%
TCTTATCTTTGGGCTACACC+TGG + chr5_1:37230771-37230790 Msa0729590:CDS 45.0%
AAAAAACCAGGAGCAACACC+AGG - chr5_1:37230792-37230811 None:intergenic 45.0%
GGTTGTTTAGACCCACTTTC+AGG + chr5_1:37230841-37230860 Msa0729590:CDS 45.0%
GTTTAGACCCACTTTCAGGA+AGG + chr5_1:37230845-37230864 Msa0729590:CDS 45.0%
!!! CTGTTTTGTCGGCTCAAGTT+AGG - chr5_1:37231466-37231485 None:intergenic 45.0%
CTAACTTGAGCCGACAAAAC+AGG + chr5_1:37231464-37231483 Msa0729590:intron 45.0%
!!! TGTTTTAGGGAAGAAGCTGG+GGG + chr5_1:37231667-37231686 Msa0729590:CDS 45.0%
AGCCAAAAAGCCCTCTTCAA+AGG + chr5_1:37231724-37231743 Msa0729590:CDS 45.0%
ATGAAGTCAGGATACGAGCT+GGG + chr5_1:37231796-37231815 Msa0729590:intron 45.0%
CACATGCTATACCCACAAGT+TGG - chr5_1:37232014-37232033 None:intergenic 45.0%
!!! AATTTTTGGCACCATCACCG+GGG - chr5_1:37232805-37232824 None:intergenic 45.0%
!! CGAAACATTGATTCTTGGCG+AGG + chr5_1:37232831-37232850 Msa0729590:CDS 45.0%
TTAGACGGTCTTCACTCAAC+TGG + chr5_1:37232928-37232947 Msa0729590:CDS 45.0%
CTGGTGCAGCATATCTGAAA+TGG - chr5_1:37233334-37233353 None:intergenic 45.0%
GTGCTCATAATGTACTGCTC+TGG - chr5_1:37233353-37233372 None:intergenic 45.0%
CTATTATCAGAGCGTAAGCC+AGG - chr5_1:37233932-37233951 None:intergenic 45.0%
!! GTGACTATGACTTGGTTGCA+TGG + chr5_1:37233984-37234003 Msa0729590:CDS 45.0%
GGTTGCATGGAGAAAAACTG+TGG + chr5_1:37233997-37234016 Msa0729590:CDS 45.0%
GAGCTGTTGGATTTAGATGG+CGG + chr5_1:37234055-37234074 Msa0729590:CDS 45.0%
CGAGCAACACAACAGGATTA+TGG + chr5_1:37234223-37234242 Msa0729590:CDS 45.0%
ATTATGGAGAAGCTGCCAAG+TGG + chr5_1:37234239-37234258 Msa0729590:CDS 45.0%
TTACGTGACTGAAAGGTCAC+GGG - chr5_1:37234488-37234507 None:intergenic 45.0%
GTTACGTGACTGAAAGGTCA+CGG - chr5_1:37234489-37234508 None:intergenic 45.0%
!!! CAAGGCTCCCTATTTTTGGA+GGG + chr5_1:37234525-37234544 Msa0729590:intron 45.0%
GGAAATTGTGCCCAAGAAGA+AGG + chr5_1:37234757-37234776 Msa0729590:intron 45.0%
TGGATGAGCTCAGCAAAAAC+AGG + chr5_1:37234855-37234874 Msa0729590:CDS 45.0%
!! ACAGGAAAAGCATTTGGTGG+AGG + chr5_1:37234873-37234892 Msa0729590:CDS 45.0%
! AAAGCATTTGGTGGAGGAGA+TGG + chr5_1:37234879-37234898 Msa0729590:CDS 45.0%
!!! AATATTTATTTTTTTCAATT+AGG + chr5_1:37231160-37231179 Msa0729590:intron 5.0%
!!! ATATTTATTTTTTTCAATTA+GGG + chr5_1:37231161-37231180 Msa0729590:intron 5.0%
ATGGCCACTGTTGCAACCAA+AGG + chr5_1:37230441-37230460 Msa0729590:CDS 50.0%
AATCTTGCACTGCATGGTGG+TGG - chr5_1:37230561-37230580 None:intergenic 50.0%
GGCTTGAATGTTACTGTCCC+TGG + chr5_1:37230723-37230742 Msa0729590:CDS 50.0%
GATGAAGTCAGGATACGAGC+TGG + chr5_1:37231795-37231814 Msa0729590:intron 50.0%
TGAAGTCAGGATACGAGCTG+GGG + chr5_1:37231797-37231816 Msa0729590:intron 50.0%
CTGCACTCTCTCCAGTCTTA+TGG + chr5_1:37233408-37233427 Msa0729590:CDS 50.0%
! ACTCTCTCCAGTCTTATGGC+AGG + chr5_1:37233412-37233431 Msa0729590:CDS 50.0%
AAAACTGTGGAGCCTCGATG+TGG + chr5_1:37234010-37234029 Msa0729590:CDS 50.0%
!! TAGGAGAGGCTTTGAGCTGT+TGG + chr5_1:37234042-37234061 Msa0729590:CDS 50.0%
TCAGGAACAGAAAAGGAGGG+TGG + chr5_1:37234283-37234302 Msa0729590:CDS 50.0%
TTTGCTGGACACTCGACAGA+TGG + chr5_1:37234366-37234385 Msa0729590:intron 50.0%
ACAACTTTACCGTTGCGCCA+AGG + chr5_1:37234507-37234526 Msa0729590:intron 50.0%
CCTCCAAAAATAGGGAGCCT+TGG - chr5_1:37234527-37234546 None:intergenic 50.0%
!!! CCAAGGCTCCCTATTTTTGG+AGG + chr5_1:37234524-37234543 Msa0729590:intron 50.0%
ATTGTGCCCAAGAAGAAGGC+TGG + chr5_1:37234761-37234780 Msa0729590:CDS 50.0%
TGTGCACCAGCCTTCTTCTT+GGG - chr5_1:37234770-37234789 None:intergenic 50.0%
TTGTGCACCAGCCTTCTTCT+TGG - chr5_1:37234771-37234790 None:intergenic 50.0%
TGGGCTTCCATGCACTGTGA+TGG + chr5_1:37230656-37230675 Msa0729590:CDS 55.0%
CCACACTCCATCACAGTGCA+TGG - chr5_1:37230666-37230685 None:intergenic 55.0%
! CCATGCACTGTGATGGAGTG+TGG + chr5_1:37230663-37230682 Msa0729590:CDS 55.0%
TCCATAACCCACTCGTCCCT+TGG + chr5_1:37231399-37231418 Msa0729590:intron 55.0%
!! ACCAAGGGACGAGTGGGTTA+TGG - chr5_1:37231403-37231422 None:intergenic 55.0%
GTTTCGACCAAGGGACGAGT+GGG - chr5_1:37231409-37231428 None:intergenic 55.0%
CAGAGCCTCGTTTCGACCAA+GGG - chr5_1:37231418-37231437 None:intergenic 55.0%
TCAGAGCCTCGTTTCGACCA+AGG - chr5_1:37231419-37231438 None:intergenic 55.0%
TTTAGGGAAGAAGCTGGGGG+AGG + chr5_1:37231670-37231689 Msa0729590:CDS 55.0%
TTAGGGAAGAAGCTGGGGGA+GGG + chr5_1:37231671-37231690 Msa0729590:CDS 55.0%
AAGCTGGGGGAGGGATCATT+TGG + chr5_1:37231680-37231699 Msa0729590:CDS 55.0%
GAAGTCAGGATACGAGCTGG+GGG + chr5_1:37231798-37231817 Msa0729590:intron 55.0%
TGTACGAGACCCTGAGACCA+TGG - chr5_1:37233083-37233102 None:intergenic 55.0%
GCTGCTACAGACTTGCGAGT+TGG + chr5_1:37233124-37233143 Msa0729590:CDS 55.0%
GCAGTTGCAACTGGAGCTGA+GGG - chr5_1:37233392-37233411 None:intergenic 55.0%
TGCAGTTGCAACTGGAGCTG+AGG - chr5_1:37233393-37233412 None:intergenic 55.0%
! GGAGAGAGTGCAGTTGCAAC+TGG - chr5_1:37233401-37233420 None:intergenic 55.0%
CTAAGTTCAGCGCCACATCG+AGG - chr5_1:37234025-37234044 None:intergenic 55.0%
! CTCGATGTGGCGCTGAACTT+AGG + chr5_1:37234023-37234042 Msa0729590:CDS 55.0%
! TGTGGCGCTGAACTTAGGAG+AGG + chr5_1:37234028-37234047 Msa0729590:CDS 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr5_1:37234476-37234495 None:intergenic 55.0%
AATAGGGAGCCTTGGCGCAA+CGG - chr5_1:37234519-37234538 None:intergenic 55.0%
! GCGCCAAGGCTCCCTATTTT+TGG + chr5_1:37234521-37234540 Msa0729590:intron 55.0%
GAGGAGATGGATCCCAAGAG+AGG + chr5_1:37234892-37234911 Msa0729590:CDS 55.0%
!! CTTGCACTGCATGGTGGTGG+TGG - chr5_1:37230558-37230577 None:intergenic 60.0%
!! GCTACACCTGGTGTTGCTCC+TGG + chr5_1:37230783-37230802 Msa0729590:CDS 60.0%
CGTTTCGACCAAGGGACGAG+TGG - chr5_1:37231410-37231429 None:intergenic 60.0%
CTCGTCCCTTGGTCGAAACG+AGG + chr5_1:37231410-37231429 Msa0729590:intron 60.0%
AAGGTCGCCAGTATCAGCCC+CGG + chr5_1:37232785-37232804 Msa0729590:intron 60.0%
ACCATCACCGGGGCTGATAC+TGG - chr5_1:37232795-37232814 None:intergenic 60.0%
! ACTGGAGCTGAGGGTGCAGA+TGG - chr5_1:37233383-37233402 None:intergenic 60.0%
GCCAGTATCAGCCCCGGTGA+TGG + chr5_1:37232791-37232810 Msa0729590:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 37230349 37235181 37230349 ID=Msa0729590;Name=Msa0729590
chr5_1 mRNA 37230349 37235181 37230349 ID=Msa0729590-mRNA-1;Parent=Msa0729590;Name=Msa0729590-mRNA-1;_AED=0.14;_eAED=0.14;_QI=92|1|1|1|1|1|10|262|573
chr5_1 exon 37230349 37230866 37230349 ID=Msa0729590-mRNA-1:exon:11233;Parent=Msa0729590-mRNA-1
chr5_1 exon 37231659 37231745 37231659 ID=Msa0729590-mRNA-1:exon:11234;Parent=Msa0729590-mRNA-1
chr5_1 exon 37232113 37232232 37232113 ID=Msa0729590-mRNA-1:exon:11235;Parent=Msa0729590-mRNA-1
chr5_1 exon 37232356 37232454 37232356 ID=Msa0729590-mRNA-1:exon:11236;Parent=Msa0729590-mRNA-1
chr5_1 exon 37232829 37232997 37232829 ID=Msa0729590-mRNA-1:exon:11237;Parent=Msa0729590-mRNA-1
chr5_1 exon 37233092 37233185 37233092 ID=Msa0729590-mRNA-1:exon:11238;Parent=Msa0729590-mRNA-1
chr5_1 exon 37233340 37233433 37233340 ID=Msa0729590-mRNA-1:exon:11239;Parent=Msa0729590-mRNA-1
chr5_1 exon 37233536 37233592 37233536 ID=Msa0729590-mRNA-1:exon:11240;Parent=Msa0729590-mRNA-1
chr5_1 exon 37233923 37234336 37233923 ID=Msa0729590-mRNA-1:exon:11241;Parent=Msa0729590-mRNA-1
chr5_1 exon 37234758 37235181 37234758 ID=Msa0729590-mRNA-1:exon:11242;Parent=Msa0729590-mRNA-1
chr5_1 five_prime_UTR 37230349 37230440 37230349 ID=Msa0729590-mRNA-1:five_prime_utr;Parent=Msa0729590-mRNA-1
chr5_1 CDS 37230441 37230866 37230441 ID=Msa0729590-mRNA-1:cds;Parent=Msa0729590-mRNA-1
chr5_1 CDS 37231659 37231745 37231659 ID=Msa0729590-mRNA-1:cds;Parent=Msa0729590-mRNA-1
chr5_1 CDS 37232113 37232232 37232113 ID=Msa0729590-mRNA-1:cds;Parent=Msa0729590-mRNA-1
chr5_1 CDS 37232356 37232454 37232356 ID=Msa0729590-mRNA-1:cds;Parent=Msa0729590-mRNA-1
chr5_1 CDS 37232829 37232997 37232829 ID=Msa0729590-mRNA-1:cds;Parent=Msa0729590-mRNA-1
chr5_1 CDS 37233092 37233185 37233092 ID=Msa0729590-mRNA-1:cds;Parent=Msa0729590-mRNA-1
chr5_1 CDS 37233340 37233433 37233340 ID=Msa0729590-mRNA-1:cds;Parent=Msa0729590-mRNA-1
chr5_1 CDS 37233536 37233592 37233536 ID=Msa0729590-mRNA-1:cds;Parent=Msa0729590-mRNA-1
chr5_1 CDS 37233923 37234336 37233923 ID=Msa0729590-mRNA-1:cds;Parent=Msa0729590-mRNA-1
chr5_1 CDS 37234758 37234919 37234758 ID=Msa0729590-mRNA-1:cds;Parent=Msa0729590-mRNA-1
chr5_1 three_prime_UTR 37234920 37235181 37234920 ID=Msa0729590-mRNA-1:three_prime_utr;Parent=Msa0729590-mRNA-1
Gene Sequence

>Msa0729590

ATGGCCACTGTTGCAACCAAAGGAATTGGAGTCACAAAGCTCCATCCCTACAACCCCAACAAAAAATCCATTTTCCTTGGCCAAAGACTTAGAATCAAACCCTCAAACAATGAACCACCACCACCATGCAGTGCAAGATTCATCACCACAAAAGCCATTCATGGTGCTGAATGGATTCTTGAATCAGCTCACAACCTTTTTGTAGGTGTTGGTGTTGGGCTTCCATGCACTGTGATGGAGTGTGGAGATATGATCTATAGAAGCACTCTTCCTAAGTCTAGTGGCTTGAATGTTACTGTCCCTGGTGTTGTTCTTGCTTTTGGTGCTTTGTCTTATCTTTGGGCTACACCTGGTGTTGCTCCTGGTTTTTTTGATATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTTAGACCCACTTTCAGGAAGGATGATTTTGTTTTAGGGAAGAAGCTGGGGGAGGGATCATTTGGAGTTGTTTATAGAGTGACACTAGCCAAAAAGCCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAACGAGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGGTCTACAAAGAAGACTCCTGAATATTGGCTTATATGGAGGTTTGAAGGGGATGCTACCTTAGCTGATCTATTGCAGAGTAGAGATTTTCCATATAATGTCGAAACATTGATTCTTGGCGAGGTACAAGATTTTCCAAAGGGATTGGAAAGAGAAAATAAAATTATTCAAACAATCATAAGACAACTCTTGTTCGCATTAGACGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCGCAGAACATTATTTTCTCTGAAGGGTCTCGTACATTCAAAATAATTGATCTTGGAGCTGCTACAGACTTGCGAGTTGGCATTAACTACATTCCTAAAGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAGCAGTACATTATGAGCACACAAACTCCATCTGCACCCTCAGCTCCAGTTGCAACTGCACTCTCTCCAGTCTTATGGCAGTTGAATCTTCCTGACAGATTTGATATCTACAGTACTGGTCTAATATTCCTCCAAATGGCATTTCCTGGCTTACGCTCTGATAATAGCCTTATACAATTCAACCGTCAATTAAAGAGGTGTGACTATGACTTGGTTGCATGGAGAAAAACTGTGGAGCCTCGATGTGGCGCTGAACTTAGGAGAGGCTTTGAGCTGTTGGATTTAGATGGCGGAATAGGATGGGAACTTTTGACGTCAATGGTCCGATATAAAGCAAGGCAAAGGCTGAGTGCTAAAGCAGCGTTAGCTCATCCTTACTTTGACAAAGAAGGCTTGTTGGCATTATCTATCATGCAAAATCTGAGGCTTAAGTTTTTTCGAGCAACACAACAGGATTATGGAGAAGCTGCCAAGTGGATTATTCAGCTTATGGCAAAATCAGGAACAGAAAAGGAGGGTGGATTCACTGAAGCTCAACTACAGGAACTTAGAGAAATTGTGCCCAAGAAGAAGGCTGGTGCACAAAGAAATGCTCTAGCTTCAGCTCTTAAAGTGCAAAGGAAAATTATAAAAACCTTAAACGAGAGTATGGATGAGCTCAGCAAAAACAGGAAAAGCATTTGGTGGAGGAGATGGATCCCAAGAGAGGAATGA

Protein sequence

>Msa0729590

MATVATKGIGVTKLHPYNPNKKSIFLGQRLRIKPSNNEPPPPCSARFITTKAIHGAEWILESAHNLFVGVGVGLPCTVMECGDMIYRSTLPKSSGLNVTVPGVVLAFGALSYLWATPGVAPGFFDMFVLAFVERLFRPTFRKDDFVLGKKLGEGSFGVVYRVTLAKKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLERSTKKTPEYWLIWRFEGDATLADLLQSRDFPYNVETLILGEVQDFPKGLERENKIIQTIIRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSTGLIFLQMAFPGLRSDNSLIQFNRQLKRCDYDLVAWRKTVEPRCGAELRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDKEGLLALSIMQNLRLKFFRATQQDYGEAAKWIIQLMAKSGTEKEGGFTEAQLQELREIVPKKKAGAQRNALASALKVQRKIIKTLNESMDELSKNRKSIWWRRWIPREE*