AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0302020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302020 MtrunA17_Chr2g0327771 96.654 508 16 1 1 508 1 507 0.0 1009
Msa0302020 MtrunA17_Chr2g0279401 65.877 422 142 2 88 508 102 522 0.0 577
Msa0302020 MtrunA17_Chr4g0050151 66.832 404 133 1 102 505 110 512 0.0 573
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302020 AT5G59750.1 69.396 513 139 6 1 507 2 502 0.0 712
Msa0302020 AT5G59750.2 65.082 547 139 7 1 507 2 536 0.0 695
Msa0302020 AT5G59750.3 66.812 458 134 6 1 452 2 447 0.0 603
Msa0302020 AT5G64300.1 67.067 416 136 1 90 505 112 526 0.0 588
Msa0302020 AT2G22450.1 58.418 392 154 3 92 483 92 474 1.52e-159 462

Find 124 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAATTTGTTGGTCTTAA+AGG 0.107436 2_3:+58581123 Msa0302020:CDS
TGTTTAACTGGGGATATATT+TGG 0.172347 2_3:+58580288 Msa0302020:CDS
TGTCACATCTTCCTACTAAA+TGG 0.198867 2_3:+58580026 Msa0302020:CDS
TTCCTTGGCGTAATGCATTA+AGG 0.202150 2_3:-58578865 None:intergenic
TATTGTTAGGATGCAAAATA+TGG 0.229542 2_3:+58579444 Msa0302020:intron
ACCTTGATCTTGCAAATTAT+AGG 0.252533 2_3:-58580442 None:intergenic
GAACAACAAGGTGAGAAATT+TGG 0.257120 2_3:+58578634 Msa0302020:CDS
ACCAAGATGGGTCATATATA+TGG 0.276727 2_3:+58581228 Msa0302020:CDS
TACTGAGGCTTCTGTAGATT+TGG 0.288351 2_3:+58579614 Msa0302020:CDS
TTTGTTGGTCTTAAAGGATA+TGG 0.289327 2_3:+58581129 Msa0302020:CDS
CGCTTGTTTGCTTCGGTGAT+TGG 0.290801 2_3:-58581186 None:intergenic
GTCCAAGCAAACATAGATTT+GGG 0.316048 2_3:+58580474 Msa0302020:CDS
AGTCCAAGCAAACATAGATT+TGG 0.316830 2_3:+58580473 Msa0302020:CDS
GTACATTCAGAATGTTTAAC+TGG 0.320458 2_3:+58580276 Msa0302020:CDS
ATATATGGGTCTGATATATA+AGG 0.354394 2_3:+58581243 Msa0302020:CDS
ATAAAATATGTACCTTGAAT+TGG 0.360216 2_3:-58578482 None:intergenic
TCCTTGGCGTAATGCATTAA+GGG 0.365334 2_3:-58578864 None:intergenic
TGATGTTGAAGATGGAAATA+TGG 0.367048 2_3:+58579683 Msa0302020:CDS
TCGGAGAAAACGAGAGAAAT+TGG 0.372980 2_3:+58579988 Msa0302020:CDS
TACTCCTTAGAGGGACAATC+TGG 0.387555 2_3:-58578824 None:intergenic
TTCTGTAGATTTGGTTGCAT+TGG 0.388739 2_3:+58579623 Msa0302020:CDS
GTAGATTTGGTTGCATTGGC+AGG 0.388977 2_3:+58579627 Msa0302020:CDS
GTCACATCTTCCTACTAAAT+GGG 0.389348 2_3:+58580027 Msa0302020:CDS
ACTCATCATAGTGTAAGATT+TGG 0.392279 2_3:+58578605 Msa0302020:CDS
TCATAGCCAAATCTAGTTGC+TGG 0.393601 2_3:-58580332 None:intergenic
AGAGCTGTGAGAACAGAAAA+TGG 0.400675 2_3:-58579657 None:intergenic
TGATATATAAGGATCATTAC+AGG 0.400902 2_3:+58581254 Msa0302020:exon
AACAATCCAGCAAAATTTGT+TGG 0.402087 2_3:+58581114 Msa0302020:CDS
TTTCCTCTCAAGTATAGAAA+TGG 0.404838 2_3:+58579567 Msa0302020:CDS
AATTCTAGCTAACCTTTCCT+TGG 0.419158 2_3:-58578880 None:intergenic
AAATCAGTTATTGAGACAAT+TGG 0.419486 2_3:-58579750 None:intergenic
TCTCAATAACTGATTTGATA+AGG 0.421147 2_3:+58579757 Msa0302020:CDS
TAGGTAACGCTTGTTTGCTT+CGG 0.423031 2_3:-58581193 None:intergenic
AAGTCCTCGGATTTCGACTC+TGG 0.423258 2_3:-58579525 None:intergenic
TGATCCAGATTGTCCCTCTA+AGG 0.424415 2_3:+58578820 Msa0302020:CDS
CTGTGGCCAGCAACTAGATT+TGG 0.426292 2_3:+58580326 Msa0302020:CDS
TGAAATAGACCCCATTTAGT+AGG 0.431751 2_3:-58580037 None:intergenic
GAAGGAAGAGGCATTGGGTT+AGG 0.438985 2_3:+58580405 Msa0302020:CDS
AATGGAAGAGTACTCCTTAG+AGG 0.439818 2_3:-58578834 None:intergenic
GAATCCTCTTCTTCAGTCTC+AGG 0.446487 2_3:-58579304 None:intergenic
TTCTCACCTTGTTGTTCCAC+AGG 0.446496 2_3:-58578628 None:intergenic
ACCCCAAATCTATGTTTGCT+TGG 0.446947 2_3:-58580476 None:intergenic
CCCATATATATGACCCATCT+TGG 0.449345 2_3:-58581229 None:intergenic
TGTTGAAGGGAATCTTATAA+AGG 0.455110 2_3:+58579165 Msa0302020:CDS
TTTATGATTAAACATGGATC+AGG 0.455192 2_3:+58579220 Msa0302020:CDS
AGCGTTACCTAGAAACAAAA+AGG 0.456329 2_3:+58581205 Msa0302020:CDS
GCTGTTGATGCTCGTGAGTA+TGG 0.457469 2_3:+58580501 Msa0302020:CDS
ATGAAATTGATTGAAGAAGC+TGG 0.460792 2_3:+58580351 Msa0302020:CDS
TGCATTAAGGGCATGCTCAA+TGG 0.463896 2_3:-58578852 None:intergenic
GATGAAAACAACAATGTTGA+AGG 0.466495 2_3:+58579151 Msa0302020:CDS
CCAAGATGGGTCATATATAT+GGG 0.479755 2_3:+58581229 Msa0302020:CDS
GGTCATGAAGGAAGAGGCAT+TGG 0.482864 2_3:+58580399 Msa0302020:CDS
TTGGTTGCTTAGGGAAACAT+AGG 0.482975 2_3:+58580228 Msa0302020:intron
CCACTGTGATAGTGAAAGTA+GGG 0.484212 2_3:-58579333 None:intergenic
AATCATAAATGCCACATCCT+TGG 0.486532 2_3:-58579206 None:intergenic
GCCTATAATTTGCAAGATCA+AGG 0.487252 2_3:+58580441 Msa0302020:CDS
TGGAACTTCCACGGGCGTAT+CGG 0.490010 2_3:+58579464 Msa0302020:CDS
ATGTGTTCTTCGATGAATCT+TGG 0.492800 2_3:-58581302 None:intergenic
GGAGTAATTGTGTATCTTAG+AGG 0.493061 2_3:+58580378 Msa0302020:CDS
ATAGAAATGGTGGAGTGCTT+AGG 0.494926 2_3:+58579580 Msa0302020:CDS
CCCACGTCATCACCAATTCA+AGG 0.497388 2_3:+58578470 Msa0302020:CDS
TGAGTATGGCATTGGTGCCC+AGG 0.497742 2_3:+58580515 Msa0302020:CDS
ACGTGGGAAATCAAAGGACT+AGG 0.503550 2_3:-58578454 None:intergenic
GCTCTTGTTGATGTTGAAGA+TGG 0.508607 2_3:+58579675 Msa0302020:CDS
TTGATTGAAGAAGCTGGAAG+AGG 0.514495 2_3:+58580357 Msa0302020:CDS
AAATTTGATATCCCTGCCTA+TGG 0.519545 2_3:+58578417 Msa0302020:exon
TTCCACGGGCGTATCGGCTG+CGG 0.519817 2_3:+58579470 Msa0302020:CDS
GGTGGAGTGCTTAGGAGAGC+TGG 0.520674 2_3:+58579588 Msa0302020:CDS
TGTTATAGTTCAAAGTTGGA+TGG 0.520999 2_3:+58580067 Msa0302020:CDS
GCTTAGGGAAACATAGGAGA+TGG 0.523904 2_3:+58580234 Msa0302020:intron
GGATATGGTTTAGCTGTGAC+AGG 0.524023 2_3:+58581144 Msa0302020:CDS
ATATTGTTATAGTTCAAAGT+TGG 0.524855 2_3:+58580063 Msa0302020:CDS
TCAGTCTCAGGTGACATAAG+AGG 0.529829 2_3:-58579292 None:intergenic
GGGAATGAAGCAGAGTCCAT+AGG 0.530818 2_3:-58578433 None:intergenic
GCAAAATATGGAACTTCCAC+GGG 0.532239 2_3:+58579456 Msa0302020:CDS
TATTTATTCAAAGCTTGCAT+CGG 0.545583 2_3:+58578573 Msa0302020:intron
GGATCAGGAATAGTTTCTGT+TGG 0.545719 2_3:+58579235 Msa0302020:CDS
TCGGTGATTGGTGTTAGCAC+AGG 0.545794 2_3:-58581174 None:intergenic
ATGAAGCAGAGTCCATAGGC+AGG 0.546682 2_3:-58578429 None:intergenic
GTCACCTGAGACTGAAGAAG+AGG 0.559881 2_3:+58579300 Msa0302020:CDS
CCACCATTTCTATACTTGAG+AGG 0.560237 2_3:-58579570 None:intergenic
TGAGCATGTGGCTGTTGTAA+AGG 0.560783 2_3:+58580093 Msa0302020:CDS
CTTAGAGGTCATGAAGGAAG+AGG 0.564446 2_3:+58580393 Msa0302020:CDS
CGTGGGAAATCAAAGGACTA+GGG 0.566760 2_3:-58578453 None:intergenic
CCTCTCAAGTATAGAAATGG+TGG 0.567977 2_3:+58579570 Msa0302020:CDS
TCTTGTTAGTACCAAGGATG+TGG 0.568018 2_3:+58579195 Msa0302020:CDS
TAATGCATTACGCCAAGGAA+AGG 0.571418 2_3:+58578868 Msa0302020:CDS
TGCAAAATATGGAACTTCCA+CGG 0.571857 2_3:+58579455 Msa0302020:CDS
TTCTGTTGGCATGAAAGAAG+AGG 0.576477 2_3:+58579249 Msa0302020:CDS
ATGGAAGAGTACTCCTTAGA+GGG 0.590392 2_3:-58578833 None:intergenic
ACCACTGTGATAGTGAAAGT+AGG 0.590650 2_3:-58579334 None:intergenic
GTCATGAAGGAAGAGGCATT+GGG 0.591268 2_3:+58580400 Msa0302020:CDS
TTCTTTGTAAGTGAAGCTGA+AGG 0.595370 2_3:+58578797 Msa0302020:CDS
ATGAAAACAACAATGTTGAA+GGG 0.595372 2_3:+58579152 Msa0302020:CDS
TACATTCAGAATGTTTAACT+GGG 0.597083 2_3:+58580277 Msa0302020:CDS
CTTAGGGAAACATAGGAGAT+GGG 0.597548 2_3:+58580235 Msa0302020:intron
GCCCTTAATGCATTACGCCA+AGG 0.607779 2_3:+58578863 Msa0302020:CDS
GATGCTCGTGAGTATGGCAT+TGG 0.608440 2_3:+58580507 Msa0302020:CDS
GTGTATCTTAGAGGTCATGA+AGG 0.608731 2_3:+58580387 Msa0302020:CDS
GGGATATATTTGGATCAGCT+CGG 0.611108 2_3:+58580298 Msa0302020:CDS
GTGGCATTTATGATTAAACA+TGG 0.613664 2_3:+58579214 Msa0302020:CDS
TCCGAGGACTTAAGAAAACC+AGG 0.619694 2_3:+58579537 Msa0302020:CDS
ATCCGCAGCCGATACGCCCG+TGG 0.624899 2_3:-58579472 None:intergenic
ATTTGGCCTGTGGAACAACA+AGG 0.634139 2_3:+58578622 Msa0302020:CDS
ATAGTGTAAGATTTGGCCTG+TGG 0.635119 2_3:+58578612 Msa0302020:CDS
TCACATCTTCCTACTAAATG+GGG 0.639715 2_3:+58580028 Msa0302020:CDS
AGCATCTCTTGTTAGTACCA+AGG 0.640073 2_3:+58579189 Msa0302020:CDS
GAAGACGTGTTTGATGATAG+TGG 0.645204 2_3:+58578692 Msa0302020:CDS
TGAAGCAGAGTCCATAGGCA+GGG 0.649337 2_3:-58578428 None:intergenic
GTGATGACGTGGGAAATCAA+AGG 0.652787 2_3:-58578460 None:intergenic
ACCTTGAATTGGTGATGACG+TGG 0.653143 2_3:-58578471 None:intergenic
GGATCAGCTCGGTGTGACTG+TGG 0.657027 2_3:+58580309 Msa0302020:CDS
TCCAAGCAAACATAGATTTG+GGG 0.659816 2_3:+58580475 Msa0302020:CDS
TCTCAGGTGACATAAGAGGA+AGG 0.670240 2_3:-58579288 None:intergenic
ATCTCCAGAGTCGAAATCCG+AGG 0.671355 2_3:+58579521 Msa0302020:CDS
CACTGTGATAGTGAAAGTAG+GGG 0.673445 2_3:-58579332 None:intergenic
GATATATAAGGATCATTACA+GGG 0.676114 2_3:+58581255 Msa0302020:exon
TAGGAGAGCTGGTCATACTG+AGG 0.694929 2_3:+58579599 Msa0302020:CDS
ACATTCAGAATGTTTAACTG+GGG 0.696460 2_3:+58580278 Msa0302020:CDS
GTTGGATGGAACTGAGCATG+TGG 0.707210 2_3:+58580081 Msa0302020:CDS
ACATTGGAGTTCGAACTATG+CGG 0.711508 2_3:+58581082 Msa0302020:CDS
CCTTGAATTGGTGATGACGT+GGG 0.735027 2_3:-58578470 None:intergenic
GCTGTGAGAACAGAAAATGG+TGG 0.741200 2_3:-58579654 None:intergenic
CCCTACTTTCACTATCACAG+TGG 0.748231 2_3:+58579333 Msa0302020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAAAAAAATATTGATAT+AGG - chr2_3:58579112-58579131 None:intergenic 10.0%
!!! GTTTTTGTTTTTTTAAAATT+CGG - chr2_3:58580656-58580675 None:intergenic 10.0%
!! TGTTAAAAAAAAAAATTCAA+AGG + chr2_3:58581360-58581379 Msa0302020:three_prime_UTR 10.0%
!! TATTCTTAGAAAATATTTGA+AGG - chr2_3:58578396-58578415 None:intergenic 15.0%
!! TTGTGTAATATATTATTGTT+AGG + chr2_3:58579431-58579450 Msa0302020:intron 15.0%
!! TCTGAATTATAATTTCTTAT+TGG + chr2_3:58580209-58580228 Msa0302020:intron 15.0%
!! ATAAAATATGTACCTTGAAT+TGG - chr2_3:58578485-58578504 None:intergenic 20.0%
!! GATTTGAAGAAAAATGAAAA+TGG + chr2_3:58578716-58578735 Msa0302020:CDS 20.0%
!!! GATGACATTTTATTAAGTAA+TGG + chr2_3:58579063-58579082 Msa0302020:intron 20.0%
!!! AATGCTAAGTTTTTTAAACT+GGG - chr2_3:58579717-58579736 None:intergenic 20.0%
!! ATATTGTTATAGTTCAAAGT+TGG + chr2_3:58580063-58580082 Msa0302020:CDS 20.0%
!! ATCTACTAATCAACATTTAT+TGG - chr2_3:58580834-58580853 None:intergenic 20.0%
!!! TGTAAAACATTTTTGAATGT+TGG + chr2_3:58580937-58580956 Msa0302020:intron 20.0%
!! GAAATATTGCAAATTATACA+AGG - chr2_3:58580988-58581007 None:intergenic 20.0%
! TATTTATTCAAAGCTTGCAT+CGG + chr2_3:58578573-58578592 Msa0302020:intron 25.0%
!!! AATTTGGCTTTTTATGCTAT+TGG + chr2_3:58578650-58578669 Msa0302020:CDS 25.0%
!!! ATTTGGCTTTTTATGCTATT+GGG + chr2_3:58578651-58578670 Msa0302020:CDS 25.0%
! ATGAAAACAACAATGTTGAA+GGG + chr2_3:58579152-58579171 Msa0302020:CDS 25.0%
! TTTATGATTAAACATGGATC+AGG + chr2_3:58579220-58579239 Msa0302020:CDS 25.0%
! TATTGTTAGGATGCAAAATA+TGG + chr2_3:58579444-58579463 Msa0302020:intron 25.0%
!!! CAATGCTAAGTTTTTTAAAC+TGG - chr2_3:58579718-58579737 None:intergenic 25.0%
! CAGTTTAAAAAACTTAGCAT+TGG + chr2_3:58579716-58579735 Msa0302020:CDS 25.0%
! AAATCAGTTATTGAGACAAT+TGG - chr2_3:58579753-58579772 None:intergenic 25.0%
!!! TCTCAATAACTGATTTGATA+AGG + chr2_3:58579757-58579776 Msa0302020:CDS 25.0%
! AAACATATGTTCTCTTAATG+TGG + chr2_3:58579904-58579923 Msa0302020:intron 25.0%
! TATTGTTAAGCGAATTTGAT+TGG - chr2_3:58579943-58579962 None:intergenic 25.0%
!!! TACTATTCTTTAGTTTGCTT+AGG - chr2_3:58580185-58580204 None:intergenic 25.0%
!! TAATTTCTTATTGGTTGCTT+AGG + chr2_3:58580218-58580237 Msa0302020:intron 25.0%
!! AATTTCTTATTGGTTGCTTA+GGG + chr2_3:58580219-58580238 Msa0302020:intron 25.0%
! TACATTCAGAATGTTTAACT+GGG + chr2_3:58580277-58580296 Msa0302020:CDS 25.0%
! TAATGATCAACTAAAGTAGA+TGG + chr2_3:58580589-58580608 Msa0302020:intron 25.0%
! TACTAATCAACATTTATTGG+TGG - chr2_3:58580831-58580850 None:intergenic 25.0%
! GTGCATAATTATTGTTCAAT+TGG - chr2_3:58580907-58580926 None:intergenic 25.0%
! TGAACAATAATTATGCACTT+TGG + chr2_3:58580909-58580928 Msa0302020:intron 25.0%
!!! CAACTTATAATAGCTTGTTT+TGG - chr2_3:58581034-58581053 None:intergenic 25.0%
! ATATATGGGTCTGATATATA+AGG + chr2_3:58581243-58581262 Msa0302020:CDS 25.0%
! TGATATATAAGGATCATTAC+AGG + chr2_3:58581254-58581273 Msa0302020:exon 25.0%
! GATATATAAGGATCATTACA+GGG + chr2_3:58581255-58581274 Msa0302020:exon 25.0%
ACTCATCATAGTGTAAGATT+TGG + chr2_3:58578605-58578624 Msa0302020:CDS 30.0%
! TTATGCTATTGGGTTTTCTA+AGG + chr2_3:58578661-58578680 Msa0302020:CDS 30.0%
GATGAAAACAACAATGTTGA+AGG + chr2_3:58579151-58579170 Msa0302020:CDS 30.0%
TGTTGAAGGGAATCTTATAA+AGG + chr2_3:58579165-58579184 Msa0302020:CDS 30.0%
GTGGCATTTATGATTAAACA+TGG + chr2_3:58579214-58579233 Msa0302020:CDS 30.0%
TATATGCAACAATCTGCATT+AGG - chr2_3:58579388-58579407 None:intergenic 30.0%
TTTCCTCTCAAGTATAGAAA+TGG + chr2_3:58579567-58579586 Msa0302020:CDS 30.0%
TGATGTTGAAGATGGAAATA+TGG + chr2_3:58579683-58579702 Msa0302020:CDS 30.0%
TGTTATAGTTCAAAGTTGGA+TGG + chr2_3:58580067-58580086 Msa0302020:CDS 30.0%
GTACATTCAGAATGTTTAAC+TGG + chr2_3:58580276-58580295 Msa0302020:CDS 30.0%
ACATTCAGAATGTTTAACTG+GGG + chr2_3:58580278-58580297 Msa0302020:CDS 30.0%
TGTTTAACTGGGGATATATT+TGG + chr2_3:58580288-58580307 Msa0302020:CDS 30.0%
ATGAAATTGATTGAAGAAGC+TGG + chr2_3:58580351-58580370 Msa0302020:CDS 30.0%
ACCTTGATCTTGCAAATTAT+AGG - chr2_3:58580445-58580464 None:intergenic 30.0%
GTGATTAAAAGATCTAACCT+GGG - chr2_3:58580535-58580554 None:intergenic 30.0%
AGTGATTAAAAGATCTAACC+TGG - chr2_3:58580536-58580555 None:intergenic 30.0%
ACTAAAGTAGATGGTATGAT+TGG + chr2_3:58580598-58580617 Msa0302020:intron 30.0%
! TGATAAATGTGCAGATTTTG+AGG + chr2_3:58581058-58581077 Msa0302020:intron 30.0%
! GATAAATGTGCAGATTTTGA+GGG + chr2_3:58581059-58581078 Msa0302020:intron 30.0%
AACAATCCAGCAAAATTTGT+TGG + chr2_3:58581114-58581133 Msa0302020:CDS 30.0%
! TTAAGACCAACAAATTTTGC+TGG - chr2_3:58581123-58581142 None:intergenic 30.0%
!! GCAAAATTTGTTGGTCTTAA+AGG + chr2_3:58581123-58581142 Msa0302020:CDS 30.0%
!! TTTGTTGGTCTTAAAGGATA+TGG + chr2_3:58581129-58581148 Msa0302020:CDS 30.0%
AAATTTGATATCCCTGCCTA+TGG + chr2_3:58578417-58578436 Msa0302020:exon 35.0%
AACACGAGTTCAACAAATAG+AGG - chr2_3:58578541-58578560 None:intergenic 35.0%
GAACAACAAGGTGAGAAATT+TGG + chr2_3:58578634-58578653 Msa0302020:CDS 35.0%
!! AGCGTCTAACGTTTTTAAGA+GGG - chr2_3:58578744-58578763 None:intergenic 35.0%
!! TAGCGTCTAACGTTTTTAAG+AGG - chr2_3:58578745-58578764 None:intergenic 35.0%
TTCTTTGTAAGTGAAGCTGA+AGG + chr2_3:58578797-58578816 Msa0302020:CDS 35.0%
! AATTCTAGCTAACCTTTCCT+TGG - chr2_3:58578883-58578902 None:intergenic 35.0%
CGTTACGTCTAATACATGTT+TGG + chr2_3:58578914-58578933 Msa0302020:intron 35.0%
AATCATAAATGCCACATCCT+TGG - chr2_3:58579209-58579228 None:intergenic 35.0%
TGCAAAATATGGAACTTCCA+CGG + chr2_3:58579455-58579474 Msa0302020:CDS 35.0%
! TTCTGTAGATTTGGTTGCAT+TGG + chr2_3:58579623-58579642 Msa0302020:CDS 35.0%
TTAATGTATGTGACGCTTCA+AGG + chr2_3:58579963-58579982 Msa0302020:intron 35.0%
TGTCACATCTTCCTACTAAA+TGG + chr2_3:58580026-58580045 Msa0302020:CDS 35.0%
GTCACATCTTCCTACTAAAT+GGG + chr2_3:58580027-58580046 Msa0302020:CDS 35.0%
TCACATCTTCCTACTAAATG+GGG + chr2_3:58580028-58580047 Msa0302020:CDS 35.0%
TGAAATAGACCCCATTTAGT+AGG - chr2_3:58580040-58580059 None:intergenic 35.0%
GGAGTAATTGTGTATCTTAG+AGG + chr2_3:58580378-58580397 Msa0302020:CDS 35.0%
! GCCTATAATTTGCAAGATCA+AGG + chr2_3:58580441-58580460 Msa0302020:CDS 35.0%
AGTCCAAGCAAACATAGATT+TGG + chr2_3:58580473-58580492 Msa0302020:CDS 35.0%
GTCCAAGCAAACATAGATTT+GGG + chr2_3:58580474-58580493 Msa0302020:CDS 35.0%
TCCAAGCAAACATAGATTTG+GGG + chr2_3:58580475-58580494 Msa0302020:CDS 35.0%
AGCGTTACCTAGAAACAAAA+AGG + chr2_3:58581205-58581224 Msa0302020:CDS 35.0%
!! TCTTGGTCCTTTTTGTTTCT+AGG - chr2_3:58581215-58581234 None:intergenic 35.0%
AGAAACAAAAAGGACCAAGA+TGG + chr2_3:58581215-58581234 Msa0302020:CDS 35.0%
GAAACAAAAAGGACCAAGAT+GGG + chr2_3:58581216-58581235 Msa0302020:CDS 35.0%
ACCAAGATGGGTCATATATA+TGG + chr2_3:58581228-58581247 Msa0302020:CDS 35.0%
CCAAGATGGGTCATATATAT+GGG + chr2_3:58581229-58581248 Msa0302020:CDS 35.0%
ATGTGTTCTTCGATGAATCT+TGG - chr2_3:58581305-58581324 None:intergenic 35.0%
ATAGTGTAAGATTTGGCCTG+TGG + chr2_3:58578612-58578631 Msa0302020:CDS 40.0%
!!! GCTATTGGGTTTTCTAAGGT+TGG + chr2_3:58578665-58578684 Msa0302020:CDS 40.0%
! GAAGACGTGTTTGATGATAG+TGG + chr2_3:58578692-58578711 Msa0302020:CDS 40.0%
!! ATGGAAGAGTACTCCTTAGA+GGG - chr2_3:58578836-58578855 None:intergenic 40.0%
!! AATGGAAGAGTACTCCTTAG+AGG - chr2_3:58578837-58578856 None:intergenic 40.0%
TCCTTGGCGTAATGCATTAA+GGG - chr2_3:58578867-58578886 None:intergenic 40.0%
TTCCTTGGCGTAATGCATTA+AGG - chr2_3:58578868-58578887 None:intergenic 40.0%
TAATGCATTACGCCAAGGAA+AGG + chr2_3:58578868-58578887 Msa0302020:CDS 40.0%
AGCATCTCTTGTTAGTACCA+AGG + chr2_3:58579189-58579208 Msa0302020:CDS 40.0%
TCTTGTTAGTACCAAGGATG+TGG + chr2_3:58579195-58579214 Msa0302020:CDS 40.0%
GGATCAGGAATAGTTTCTGT+TGG + chr2_3:58579235-58579254 Msa0302020:CDS 40.0%
TTCTGTTGGCATGAAAGAAG+AGG + chr2_3:58579249-58579268 Msa0302020:CDS 40.0%
! CACTGTGATAGTGAAAGTAG+GGG - chr2_3:58579335-58579354 None:intergenic 40.0%
! CCACTGTGATAGTGAAAGTA+GGG - chr2_3:58579336-58579355 None:intergenic 40.0%
! ACCACTGTGATAGTGAAAGT+AGG - chr2_3:58579337-58579356 None:intergenic 40.0%
GCAAAATATGGAACTTCCAC+GGG + chr2_3:58579456-58579475 Msa0302020:CDS 40.0%
!! ACCTGGTTTTCTTAAGTCCT+CGG - chr2_3:58579541-58579560 None:intergenic 40.0%
TTGAGAGGAAAAACATGACC+TGG - chr2_3:58579558-58579577 None:intergenic 40.0%
CCACCATTTCTATACTTGAG+AGG - chr2_3:58579573-58579592 None:intergenic 40.0%
CCTCTCAAGTATAGAAATGG+TGG + chr2_3:58579570-58579589 Msa0302020:CDS 40.0%
! ATAGAAATGGTGGAGTGCTT+AGG + chr2_3:58579580-58579599 Msa0302020:CDS 40.0%
TACTGAGGCTTCTGTAGATT+TGG + chr2_3:58579614-58579633 Msa0302020:CDS 40.0%
AGAGCTGTGAGAACAGAAAA+TGG - chr2_3:58579660-58579679 None:intergenic 40.0%
GCTCTTGTTGATGTTGAAGA+TGG + chr2_3:58579675-58579694 Msa0302020:CDS 40.0%
TATGTGACGCTTCAAGGTAT+CGG + chr2_3:58579969-58579988 Msa0302020:intron 40.0%
TCGGAGAAAACGAGAGAAAT+TGG + chr2_3:58579988-58580007 Msa0302020:CDS 40.0%
TTGGTTGCTTAGGGAAACAT+AGG + chr2_3:58580228-58580247 Msa0302020:intron 40.0%
CTTAGGGAAACATAGGAGAT+GGG + chr2_3:58580235-58580254 Msa0302020:intron 40.0%
GGGATATATTTGGATCAGCT+CGG + chr2_3:58580298-58580317 Msa0302020:CDS 40.0%
TCATAGCCAAATCTAGTTGC+TGG - chr2_3:58580335-58580354 None:intergenic 40.0%
TTGATTGAAGAAGCTGGAAG+AGG + chr2_3:58580357-58580376 Msa0302020:CDS 40.0%
GTGTATCTTAGAGGTCATGA+AGG + chr2_3:58580387-58580406 Msa0302020:CDS 40.0%
ACCCCAAATCTATGTTTGCT+TGG - chr2_3:58580479-58580498 None:intergenic 40.0%
ACATTGGAGTTCGAACTATG+CGG + chr2_3:58581082-58581101 Msa0302020:CDS 40.0%
TAGGTAACGCTTGTTTGCTT+CGG - chr2_3:58581196-58581215 None:intergenic 40.0%
CCCATATATATGACCCATCT+TGG - chr2_3:58581232-58581251 None:intergenic 40.0%
CGTGGGAAATCAAAGGACTA+GGG - chr2_3:58578456-58578475 None:intergenic 45.0%
ACGTGGGAAATCAAAGGACT+AGG - chr2_3:58578457-58578476 None:intergenic 45.0%
! GTGATGACGTGGGAAATCAA+AGG - chr2_3:58578463-58578482 None:intergenic 45.0%
!! CCTTGAATTGGTGATGACGT+GGG - chr2_3:58578473-58578492 None:intergenic 45.0%
!! ACCTTGAATTGGTGATGACG+TGG - chr2_3:58578474-58578493 None:intergenic 45.0%
ATTTGGCCTGTGGAACAACA+AGG + chr2_3:58578622-58578641 Msa0302020:CDS 45.0%
!! TTCTCACCTTGTTGTTCCAC+AGG - chr2_3:58578631-58578650 None:intergenic 45.0%
TGATCCAGATTGTCCCTCTA+AGG + chr2_3:58578820-58578839 Msa0302020:CDS 45.0%
TACTCCTTAGAGGGACAATC+TGG - chr2_3:58578827-58578846 None:intergenic 45.0%
! TGCATTAAGGGCATGCTCAA+TGG - chr2_3:58578855-58578874 None:intergenic 45.0%
TCTCAGGTGACATAAGAGGA+AGG - chr2_3:58579291-58579310 None:intergenic 45.0%
TCAGTCTCAGGTGACATAAG+AGG - chr2_3:58579295-58579314 None:intergenic 45.0%
GAATCCTCTTCTTCAGTCTC+AGG - chr2_3:58579307-58579326 None:intergenic 45.0%
CCCTACTTTCACTATCACAG+TGG + chr2_3:58579333-58579352 Msa0302020:CDS 45.0%
TCCGAGGACTTAAGAAAACC+AGG + chr2_3:58579537-58579556 Msa0302020:CDS 45.0%
! GTAGATTTGGTTGCATTGGC+AGG + chr2_3:58579627-58579646 Msa0302020:CDS 45.0%
GCTGTGAGAACAGAAAATGG+TGG - chr2_3:58579657-58579676 None:intergenic 45.0%
TGAGCATGTGGCTGTTGTAA+AGG + chr2_3:58580093-58580112 Msa0302020:CDS 45.0%
GCTTAGGGAAACATAGGAGA+TGG + chr2_3:58580234-58580253 Msa0302020:intron 45.0%
CTTAGAGGTCATGAAGGAAG+AGG + chr2_3:58580393-58580412 Msa0302020:CDS 45.0%
!! GTCATGAAGGAAGAGGCATT+GGG + chr2_3:58580400-58580419 Msa0302020:CDS 45.0%
!! GTGCAGATTTTGAGGGACAT+TGG + chr2_3:58581066-58581085 Msa0302020:intron 45.0%
GGATATGGTTTAGCTGTGAC+AGG + chr2_3:58581144-58581163 Msa0302020:CDS 45.0%
TGAAGCAGAGTCCATAGGCA+GGG - chr2_3:58578431-58578450 None:intergenic 50.0%
ATGAAGCAGAGTCCATAGGC+AGG - chr2_3:58578432-58578451 None:intergenic 50.0%
GGGAATGAAGCAGAGTCCAT+AGG - chr2_3:58578436-58578455 None:intergenic 50.0%
CCCACGTCATCACCAATTCA+AGG + chr2_3:58578470-58578489 Msa0302020:CDS 50.0%
GCCCTTAATGCATTACGCCA+AGG + chr2_3:58578863-58578882 Msa0302020:CDS 50.0%
GTCACCTGAGACTGAAGAAG+AGG + chr2_3:58579300-58579319 Msa0302020:CDS 50.0%
ATCTCCAGAGTCGAAATCCG+AGG + chr2_3:58579521-58579540 Msa0302020:CDS 50.0%
AAGTCCTCGGATTTCGACTC+TGG - chr2_3:58579528-58579547 None:intergenic 50.0%
TAGGAGAGCTGGTCATACTG+AGG + chr2_3:58579599-58579618 Msa0302020:CDS 50.0%
GTTGGATGGAACTGAGCATG+TGG + chr2_3:58580081-58580100 Msa0302020:CDS 50.0%
CTGTGGCCAGCAACTAGATT+TGG + chr2_3:58580326-58580345 Msa0302020:CDS 50.0%
! GGTCATGAAGGAAGAGGCAT+TGG + chr2_3:58580399-58580418 Msa0302020:CDS 50.0%
!! GAAGGAAGAGGCATTGGGTT+AGG + chr2_3:58580405-58580424 Msa0302020:CDS 50.0%
GCTGTTGATGCTCGTGAGTA+TGG + chr2_3:58580501-58580520 Msa0302020:CDS 50.0%
GATGCTCGTGAGTATGGCAT+TGG + chr2_3:58580507-58580526 Msa0302020:CDS 50.0%
!! TCGGTGATTGGTGTTAGCAC+AGG - chr2_3:58581177-58581196 None:intergenic 50.0%
CGCTTGTTTGCTTCGGTGAT+TGG - chr2_3:58581189-58581208 None:intergenic 50.0%
TGGAACTTCCACGGGCGTAT+CGG + chr2_3:58579464-58579483 Msa0302020:CDS 55.0%
!! TGAGTATGGCATTGGTGCCC+AGG + chr2_3:58580515-58580534 Msa0302020:CDS 55.0%
! GGTGGAGTGCTTAGGAGAGC+TGG + chr2_3:58579588-58579607 Msa0302020:CDS 60.0%
!! GGATCAGCTCGGTGTGACTG+TGG + chr2_3:58580309-58580328 Msa0302020:CDS 60.0%
!! TTCCACGGGCGTATCGGCTG+CGG + chr2_3:58579470-58579489 Msa0302020:CDS 65.0%
ATCCGCAGCCGATACGCCCG+TGG - chr2_3:58579475-58579494 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 58578351 58581434 58578351 ID=Msa0302020;Name=Msa0302020
chr2_3 mRNA 58578351 58581434 58578351 ID=Msa0302020-mRNA-1;Parent=Msa0302020;Name=Msa0302020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=65|1|1|1|0.85|0.75|8|171|508
chr2_3 exon 58578351 58578379 58578351 ID=Msa0302020-mRNA-1:exon:18900;Parent=Msa0302020-mRNA-1
chr2_3 exon 58578400 58578491 58578400 ID=Msa0302020-mRNA-1:exon:18901;Parent=Msa0302020-mRNA-1
chr2_3 exon 58578586 58578889 58578586 ID=Msa0302020-mRNA-1:exon:18902;Parent=Msa0302020-mRNA-1
chr2_3 exon 58579133 58579354 58579133 ID=Msa0302020-mRNA-1:exon:18903;Parent=Msa0302020-mRNA-1
chr2_3 exon 58579453 58579778 58579453 ID=Msa0302020-mRNA-1:exon:18904;Parent=Msa0302020-mRNA-1
chr2_3 exon 58579985 58580114 58579985 ID=Msa0302020-mRNA-1:exon:18905;Parent=Msa0302020-mRNA-1
chr2_3 exon 58580240 58580536 58580240 ID=Msa0302020-mRNA-1:exon:18906;Parent=Msa0302020-mRNA-1
chr2_3 exon 58581072 58581434 58581072 ID=Msa0302020-mRNA-1:exon:18907;Parent=Msa0302020-mRNA-1
chr2_3 five_prime_UTR 58578351 58578379 58578351 ID=Msa0302020-mRNA-1:five_prime_utr;Parent=Msa0302020-mRNA-1
chr2_3 five_prime_UTR 58578400 58578435 58578400 ID=Msa0302020-mRNA-1:five_prime_utr;Parent=Msa0302020-mRNA-1
chr2_3 CDS 58578436 58578491 58578436 ID=Msa0302020-mRNA-1:cds;Parent=Msa0302020-mRNA-1
chr2_3 CDS 58578586 58578889 58578586 ID=Msa0302020-mRNA-1:cds;Parent=Msa0302020-mRNA-1
chr2_3 CDS 58579133 58579354 58579133 ID=Msa0302020-mRNA-1:cds;Parent=Msa0302020-mRNA-1
chr2_3 CDS 58579453 58579778 58579453 ID=Msa0302020-mRNA-1:cds;Parent=Msa0302020-mRNA-1
chr2_3 CDS 58579985 58580114 58579985 ID=Msa0302020-mRNA-1:cds;Parent=Msa0302020-mRNA-1
chr2_3 CDS 58580240 58580536 58580240 ID=Msa0302020-mRNA-1:cds;Parent=Msa0302020-mRNA-1
chr2_3 CDS 58581072 58581263 58581072 ID=Msa0302020-mRNA-1:cds;Parent=Msa0302020-mRNA-1
chr2_3 three_prime_UTR 58581264 58581434 58581264 ID=Msa0302020-mRNA-1:three_prime_utr;Parent=Msa0302020-mRNA-1
Gene Sequence

>Msa0302020

ATGGACTCTGCTTCATTCCCTAGTCCTTTGATTTCCCACGTCATCACCAATTCAAGCTTGCATCGGTCATGCACTACTCATCATAGTGTAAGATTTGGCCTGTGGAACAACAAGGTGAGAAATTTGGCTTTTTATGCTATTGGGTTTTCTAAGGTTGGAACTGAAGACGTGTTTGATGATAGTGGTGATTTGAAGAAAAATGAAAATGGATCCCTCTTAAAAACGTTAGACGCTACAAATGAAATAACTGATCAAGAAAATAGCGATTTCTTTGTAAGTGAAGCTGAAGGTGATCCAGATTGTCCCTCTAAGGAGTACTCTTCCATTGAGCATGCCCTTAATGCATTACGCCAAGGAAAGTTTGTAATCGTTGTAGATGATGAAAACAACAATGTTGAAGGGAATCTTATAAAGGCAGCATCTCTTGTTAGTACCAAGGATGTGGCATTTATGATTAAACATGGATCAGGAATAGTTTCTGTTGGCATGAAAGAAGAGGATCTTCAAAGATTAAACCTTCCTCTTATGTCACCTGAGACTGAAGAAGAGGATTCATCTGCCCCTACTTTCACTATCACAGTGGATGCAAAATATGGAACTTCCACGGGCGTATCGGCTGCGGATAGAGCAAAAACAATTCTTGCTTTATCATCTCCAGAGTCGAAATCCGAGGACTTAAGAAAACCAGGTCATGTTTTTCCTCTCAAGTATAGAAATGGTGGAGTGCTTAGGAGAGCTGGTCATACTGAGGCTTCTGTAGATTTGGTTGCATTGGCAGGCTTGCCACCATTTTCTGTTCTCACAGCTCTTGTTGATGTTGAAGATGGAAATATGGCATCTTTGCCCAGTTTAAAAAACTTAGCATTGGAATATAACTTACCAATTGTCTCAATAACTGATTTGATAAGGTATCGGAGAAAACGAGAGAAATTGGTTGAAAGAACTTATGTGTCACATCTTCCTACTAAATGGGGTCTATTTCAAGCATATTGTTATAGTTCAAAGTTGGATGGAACTGAGCATGTGGCTGTTGTAAAGGGAAACATAGGAGATGGGCAAGATGTTCTAGTAAGAGTACATTCAGAATGTTTAACTGGGGATATATTTGGATCAGCTCGGTGTGACTGTGGCCAGCAACTAGATTTGGCTATGAAATTGATTGAAGAAGCTGGAAGAGGAGTAATTGTGTATCTTAGAGGTCATGAAGGAAGAGGCATTGGGTTAGGTCACAAACTTCAAGCCTATAATTTGCAAGATCAAGGTCGTGATACAGTCCAAGCAAACATAGATTTGGGGTTAGCTGTTGATGCTCGTGAGTATGGCATTGGTGCCCAGATTTTGAGGGACATTGGAGTTCGAACTATGCGGTTGATGACAAACAATCCAGCAAAATTTGTTGGTCTTAAAGGATATGGTTTAGCTGTGACAGGTCGTGTTCCTGTGCTAACACCAATCACCGAAGCAAACAAGCGTTACCTAGAAACAAAAAGGACCAAGATGGGTCATATATATGGGTCTGATATATAA

Protein sequence

>Msa0302020

MDSASFPSPLISHVITNSSLHRSCTTHHSVRFGLWNNKVRNLAFYAIGFSKVGTEDVFDDSGDLKKNENGSLLKTLDATNEITDQENSDFFVSEAEGDPDCPSKEYSSIEHALNALRQGKFVIVVDDENNNVEGNLIKAASLVSTKDVAFMIKHGSGIVSVGMKEEDLQRLNLPLMSPETEEEDSSAPTFTITVDAKYGTSTGVSAADRAKTILALSSPESKSEDLRKPGHVFPLKYRNGGVLRRAGHTEASVDLVALAGLPPFSVLTALVDVEDGNMASLPSLKNLALEYNLPIVSITDLIRYRRKREKLVERTYVSHLPTKWGLFQAYCYSSKLDGTEHVAVVKGNIGDGQDVLVRVHSECLTGDIFGSARCDCGQQLDLAMKLIEEAGRGVIVYLRGHEGRGIGLGHKLQAYNLQDQGRDTVQANIDLGLAVDAREYGIGAQILRDIGVRTMRLMTNNPAKFVGLKGYGLAVTGRVPVLTPITEANKRYLETKRTKMGHIYGSDI*