AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0511600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511600 MtrunA17_Chr3g0117991 92.889 225 15 1 1 225 1 224 7.54e-157 433
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511600 AT5G50100.1 58.416 202 76 2 25 225 20 214 3.85e-83 246

Find 55 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAATATTGCAGCAAAATC+TGG 0.265766 3_4:-61190093 None:intergenic
CAAAATGTAGTCAGTATATA+TGG 0.342648 3_4:+61190043 Msa0511600:three_prime_UTR
AAATACCGTCTTCAAGTTAC+AGG 0.354145 3_4:+61188906 Msa0511600:CDS
TTACTCTCCCGACGAGAATC+AGG 0.359294 3_4:+61187890 Msa0511600:CDS
CGCCATTACAAAATATGAAC+CGG 0.360782 3_4:+61188737 Msa0511600:CDS
GAGTGGTGATGAAGGGTTAT+GGG 0.362096 3_4:-61187079 None:intergenic
CCCTTAAGTCTTAGTCTCTT+AGG 0.364763 3_4:+61190178 Msa0511600:three_prime_UTR
GCCTATATCAACAAACTTGA+TGG 0.376854 3_4:-61187859 None:intergenic
CCTAAGAGACTAAGACTTAA+GGG 0.389840 3_4:-61190178 None:intergenic
ACCATCAAGTTTGTTGATAT+AGG 0.406883 3_4:+61187858 Msa0511600:CDS
TGTACCTCTCGCATGCATAA+TGG 0.408229 3_4:-61187656 None:intergenic
GCCTAAGAGACTAAGACTTA+AGG 0.410627 3_4:-61190179 None:intergenic
GGGATACCGGGTTTGAGAAT+AGG 0.422503 3_4:-61187177 None:intergenic
AGAGTGGTGATGAAGGGTTA+TGG 0.426564 3_4:-61187080 None:intergenic
GACAACAGTCTCCTAAAGAT+TGG 0.442343 3_4:+61187603 Msa0511600:CDS
TGAACAAGTTGGTCTTGGTT+GGG 0.442711 3_4:+61188710 Msa0511600:CDS
TTTCTGGTTTGGTTGTGGAT+TGG 0.446784 3_4:-61187006 None:intergenic
TGGAATTTAAGATTGTGAAA+TGG 0.448918 3_4:-61187111 None:intergenic
ATGAACAAGTTGGTCTTGGT+TGG 0.452022 3_4:+61188709 Msa0511600:CDS
TTATATGAACAAGTTGGTCT+TGG 0.455211 3_4:+61188705 Msa0511600:CDS
CGAGAGAAGAATAAGAGTTA+TGG 0.482537 3_4:+61187834 Msa0511600:CDS
TGCAGCAAAATCTGGAAAGA+AGG 0.484461 3_4:-61190085 None:intergenic
AAGATTAAAATGCTATATGA+TGG 0.504605 3_4:+61187626 Msa0511600:CDS
GGTTGTGGATTGGAGATGGA+AGG 0.508644 3_4:-61186996 None:intergenic
GTTTGGTTGTGGATTGGAGA+TGG 0.512182 3_4:-61187000 None:intergenic
ATTCATGCTATTCTATCAGA+TGG 0.517070 3_4:+61188215 Msa0511600:CDS
TCTAATATTTCTTCTAGAGG+TGG 0.520299 3_4:-61189348 None:intergenic
ATTAGAAGCTCGAAGAAAGA+AGG 0.528275 3_4:+61189365 Msa0511600:CDS
GTGAAAGATGAGGACGGAGA+TGG 0.540320 3_4:-61187131 None:intergenic
TTCTTCAGATTGTATTACAC+AGG 0.545236 3_4:+61190205 Msa0511600:three_prime_UTR
AGGAGATTATATGAACAAGT+TGG 0.546603 3_4:+61188699 Msa0511600:CDS
TCGAGGCCCTGATTCTCGTC+GGG 0.546724 3_4:-61187897 None:intergenic
GGTGAAAAGAGTGGTGATGA+AGG 0.552533 3_4:-61187087 None:intergenic
GGTTTGAGAATAGGAAGTGT+TGG 0.554588 3_4:-61187168 None:intergenic
AGTGGTGATGAAGGGTTATG+GGG 0.568411 3_4:-61187078 None:intergenic
TACAATTTCTAAGAAAGAAG+AGG 0.573127 3_4:+61187577 Msa0511600:CDS
GCTTCTAATATTTCTTCTAG+AGG 0.573724 3_4:-61189351 None:intergenic
GTCGAGGCCCTGATTCTCGT+CGG 0.574141 3_4:-61187898 None:intergenic
TACTCTCCCGACGAGAATCA+GGG 0.588982 3_4:+61187891 Msa0511600:CDS
GACTGGTGAAAACTTTCAGA+AGG 0.595265 3_4:+61189975 Msa0511600:three_prime_UTR
AAGAAGCCATACTTCGACAT+CGG 0.610113 3_4:-61188249 None:intergenic
GTGAAAAGAGTGGTGATGAA+GGG 0.610189 3_4:-61187086 None:intergenic
ATTTACCTGTAACTTGAAGA+CGG 0.611328 3_4:-61188911 None:intergenic
TAAGACTTAAGGGAGACTAC+AGG 0.613653 3_4:-61190168 None:intergenic
AAATTTCCACAATATCCGAC+TGG 0.621942 3_4:+61189958 Msa0511600:exon
AGGAAGTGTTGGAAAAGCAT+CGG 0.623406 3_4:-61187157 None:intergenic
ATTTCTAAGAAAGAAGAGGA+GGG 0.627995 3_4:+61187581 Msa0511600:CDS
AATTTCTAAGAAAGAAGAGG+AGG 0.630187 3_4:+61187580 Msa0511600:CDS
GACTAACAGTTTGATAGTCG+AGG 0.648679 3_4:-61187914 None:intergenic
AATTTAAGATTGTGAAATGG+AGG 0.655857 3_4:-61187108 None:intergenic
GCATCGGCGTGTGAAAGATG+AGG 0.663047 3_4:-61187141 None:intergenic
CGGCGTGTGAAAGATGAGGA+CGG 0.668499 3_4:-61187137 None:intergenic
TTGTCCATTATGCATGCGAG+AGG 0.675961 3_4:+61187652 Msa0511600:CDS
ACACTTCCTATTCTCAAACC+CGG 0.690891 3_4:+61187171 Msa0511600:CDS
TGAAATGGAGGTGAAAAGAG+TGG 0.691751 3_4:-61187096 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGCTGATTTATTTATTTT+TGG + chr3_4:61187952-61187971 Msa0511600:intron 15.0%
!! ATTCTATAAAAATTTGAACA+TGG - chr3_4:61188357-61188376 None:intergenic 15.0%
!!! ATATTAGTACATGAAAATTT+TGG - chr3_4:61188961-61188980 None:intergenic 15.0%
!! TAATTATTCTAATGTATATG+AGG - chr3_4:61189536-61189555 None:intergenic 15.0%
!!! TGTTTTTGTTTATTATAGAT+GGG - chr3_4:61189661-61189680 None:intergenic 15.0%
!! AAAATATGGTATACAATAAT+AGG + chr3_4:61189746-61189765 Msa0511600:intron 15.0%
!!! TTATTTTTAATCCTTTTTAC+AGG + chr3_4:61189899-61189918 Msa0511600:intron 15.0%
!!! TATTTTTAATCCTTTTTACA+GGG + chr3_4:61189900-61189919 Msa0511600:intron 15.0%
!!! TTCTTTGTTTTTTGTTTTGT+AGG + chr3_4:61187509-61187528 Msa0511600:intron 20.0%
!!! TCTTTGTTTTTTGTTTTGTA+GGG + chr3_4:61187510-61187529 Msa0511600:intron 20.0%
!!! ATTTTAATCTTCCAATCTTT+AGG - chr3_4:61187617-61187636 None:intergenic 20.0%
!! AAGATTAAAATGCTATATGA+TGG + chr3_4:61187626-61187645 Msa0511600:CDS 20.0%
!!! GTTTTGTTCATTAATTTGTT+TGG + chr3_4:61188005-61188024 Msa0511600:intron 20.0%
!! TTTACAAGTAATGAATTGAT+TGG + chr3_4:61188100-61188119 Msa0511600:intron 20.0%
!!! TGATTTTTGTTTTTCCTTTT+AGG + chr3_4:61188181-61188200 Msa0511600:intron 20.0%
!! TATCCAGATAATGATATTAA+GGG - chr3_4:61188308-61188327 None:intergenic 20.0%
!! ATATCCAGATAATGATATTA+AGG - chr3_4:61188309-61188328 None:intergenic 20.0%
!! TATTTATATCTAACTCTTAC+TGG - chr3_4:61188465-61188484 None:intergenic 20.0%
!! GTAAAAATAGAATTTCATAC+TGG - chr3_4:61188668-61188687 None:intergenic 20.0%
!! ATGGTTCATTATGTTATTAA+TGG + chr3_4:61188825-61188844 Msa0511600:intron 20.0%
!! TTAAACAATATTCACAGATT+GGG + chr3_4:61188850-61188869 Msa0511600:intron 20.0%
!!! TGATTCTGTATATAGTTTTT+GGG + chr3_4:61188881-61188900 Msa0511600:CDS 20.0%
!! ACTAAAAGTGATAATCTTAT+TGG - chr3_4:61189163-61189182 None:intergenic 20.0%
!! CAAACAATGCATAAATTAAA+AGG - chr3_4:61189305-61189324 None:intergenic 20.0%
!! CATGTTAGTATATAATGTTT+CGG + chr3_4:61189414-61189433 Msa0511600:intron 20.0%
!! ATTTAACACAAAATTTCAGT+CGG + chr3_4:61189473-61189492 Msa0511600:intron 20.0%
!!! ATTCTCTTTAAAAATTCAGA+TGG - chr3_4:61189503-61189522 None:intergenic 20.0%
!!! TCTTTAATTTTTGCAACATA+AGG - chr3_4:61189620-61189639 None:intergenic 20.0%
!!! CTGTTTTTGTTTATTATAGA+TGG - chr3_4:61189662-61189681 None:intergenic 20.0%
!!! AAGACATTTTTTTTCTGGTT+TGG - chr3_4:61187020-61187039 None:intergenic 25.0%
!!! TCTGAAAGACATTTTTTTTC+TGG - chr3_4:61187025-61187044 None:intergenic 25.0%
!! AATTTAAGATTGTGAAATGG+AGG - chr3_4:61187111-61187130 None:intergenic 25.0%
!! TGGAATTTAAGATTGTGAAA+TGG - chr3_4:61187114-61187133 None:intergenic 25.0%
! AAACCATTGATATTCGATTA+GGG - chr3_4:61187201-61187220 None:intergenic 25.0%
! AAAACCATTGATATTCGATT+AGG - chr3_4:61187202-61187221 None:intergenic 25.0%
!! TCATCAGATTTTAAATTAGC+AGG - chr3_4:61187317-61187336 None:intergenic 25.0%
! CCAATGATAATAATAAGGTT+TGG - chr3_4:61187456-61187475 None:intergenic 25.0%
! CCAAACCTTATTATTATCAT+TGG + chr3_4:61187453-61187472 Msa0511600:intron 25.0%
! AACCTTATTATTATCATTGG+TGG + chr3_4:61187456-61187475 Msa0511600:intron 25.0%
! AACCACCAATGATAATAATA+AGG - chr3_4:61187461-61187480 None:intergenic 25.0%
!! TACAATTTCTAAGAAAGAAG+AGG + chr3_4:61187577-61187596 Msa0511600:CDS 25.0%
!!! TTGTTGTTATTTGTCGTTTT+AGG + chr3_4:61187800-61187819 Msa0511600:intron 25.0%
! TATTAAGGGTCTACAATTAT+AGG - chr3_4:61188294-61188313 None:intergenic 25.0%
!!! TGAAATTCTATTTTTACTGC+AGG + chr3_4:61188671-61188690 Msa0511600:intron 25.0%
! GTTAAACAATATTCACAGAT+TGG + chr3_4:61188849-61188868 Msa0511600:intron 25.0%
!! CTGATTCTGTATATAGTTTT+TGG + chr3_4:61188880-61188899 Msa0511600:CDS 25.0%
! GTAAATGCAAAGTTCATAAA+TGG + chr3_4:61188928-61188947 Msa0511600:intron 25.0%
! TATTGTAGTTGTTCTTTCTA+TGG + chr3_4:61188978-61188997 Msa0511600:intron 25.0%
!!! GTTTTTTTTTCCACTTTAGT+TGG + chr3_4:61189022-61189041 Msa0511600:intron 25.0%
! AAAAGTGATAATCTTATTGG+TGG - chr3_4:61189160-61189179 None:intergenic 25.0%
! AGCATAATTAGTTACTAATG+TGG + chr3_4:61189199-61189218 Msa0511600:intron 25.0%
! TAAAATCAGGAAAATGAAGA+TGG + chr3_4:61189442-61189461 Msa0511600:intron 25.0%
! CAACTATACCTAAGTTAATA+GGG - chr3_4:61189596-61189615 None:intergenic 25.0%
! TCAACTATACCTAAGTTAAT+AGG - chr3_4:61189597-61189616 None:intergenic 25.0%
! AACAGCAAAATGCTAAAATA+TGG + chr3_4:61189732-61189751 Msa0511600:intron 25.0%
! CAAAATGTAGTCAGTATATA+TGG + chr3_4:61190043-61190062 Msa0511600:three_prime_UTR 25.0%
!!! TTTTTTTTCTGGTTTGGTTG+TGG - chr3_4:61187014-61187033 None:intergenic 30.0%
AACCATTGATATTCGATTAG+GGG - chr3_4:61187200-61187219 None:intergenic 30.0%
TGAACTAAAACAAAACTTGC+AGG - chr3_4:61187292-61187311 None:intergenic 30.0%
! AATTTCTAAGAAAGAAGAGG+AGG + chr3_4:61187580-61187599 Msa0511600:CDS 30.0%
! ATTTCTAAGAAAGAAGAGGA+GGG + chr3_4:61187581-61187600 Msa0511600:CDS 30.0%
TCAATGAATGACATGAAACA+AGG - chr3_4:61187764-61187783 None:intergenic 30.0%
!! ACCATCAAGTTTGTTGATAT+AGG + chr3_4:61187858-61187877 Msa0511600:CDS 30.0%
GGTTTCATATCTCAATTACT+AGG + chr3_4:61187973-61187992 Msa0511600:intron 30.0%
TTCATGAACATCAACAAATG+TGG + chr3_4:61188039-61188058 Msa0511600:intron 30.0%
!! TTTTCAAGCATCTTTTGCTT+TGG + chr3_4:61188140-61188159 Msa0511600:intron 30.0%
!! TTGTTTTTCCTTTTAGGCTA+TGG + chr3_4:61188187-61188206 Msa0511600:intron 30.0%
! TGTTTTTCCTTTTAGGCTAT+GGG + chr3_4:61188188-61188207 Msa0511600:intron 30.0%
ATTCATGCTATTCTATCAGA+TGG + chr3_4:61188215-61188234 Msa0511600:CDS 30.0%
AGACCCTTAATATCATTATC+TGG + chr3_4:61188302-61188321 Msa0511600:intron 30.0%
! CTAGTATACATGCTCATTTT+TGG - chr3_4:61188435-61188454 None:intergenic 30.0%
AGGAGATTATATGAACAAGT+TGG + chr3_4:61188699-61188718 Msa0511600:CDS 30.0%
!! TTATATGAACAAGTTGGTCT+TGG + chr3_4:61188705-61188724 Msa0511600:CDS 30.0%
!! AACCGGTTCATATTTTGTAA+TGG - chr3_4:61188742-61188761 None:intergenic 30.0%
! TCTTCCTACCATACTTTTAA+AGG + chr3_4:61188764-61188783 Msa0511600:intron 30.0%
ATTTACCTGTAACTTGAAGA+CGG - chr3_4:61188914-61188933 None:intergenic 30.0%
GTGGAAAAAAAAACCATCTA+AGG - chr3_4:61189016-61189035 None:intergenic 30.0%
CAAGCTTAGTAGAAATGATA+TGG + chr3_4:61189056-61189075 Msa0511600:intron 30.0%
! ATGCATTGTTTGTCCATTTT+TGG + chr3_4:61189313-61189332 Msa0511600:intron 30.0%
! TCTAATATTTCTTCTAGAGG+TGG - chr3_4:61189351-61189370 None:intergenic 30.0%
GCTTCTAATATTTCTTCTAG+AGG - chr3_4:61189354-61189373 None:intergenic 30.0%
TAATAGGGATAGACTAATCT+TGG - chr3_4:61189581-61189600 None:intergenic 30.0%
TAGTCTATCCCTATTAACTT+AGG + chr3_4:61189585-61189604 Msa0511600:intron 30.0%
TTGTTTATTATAGATGGGCA+TGG - chr3_4:61189656-61189675 None:intergenic 30.0%
! ACAAAGGCATGAACTAATAT+TGG - chr3_4:61189799-61189818 None:intergenic 30.0%
ATATTAGTTCATGCCTTTGT+TGG + chr3_4:61189799-61189818 Msa0511600:intron 30.0%
! GAAAAGTATGTTACCAACAA+AGG - chr3_4:61189815-61189834 None:intergenic 30.0%
! ATACAAGTTTGAGTGCTATT+TGG + chr3_4:61189853-61189872 Msa0511600:intron 30.0%
!!! GGTGCTGATTTTTGTTTTTA+TGG + chr3_4:61189874-61189893 Msa0511600:intron 30.0%
TTCTTCAGATTGTATTACAC+AGG + chr3_4:61190205-61190224 Msa0511600:three_prime_UTR 30.0%
ATCCCCTAATCGAATATCAA+TGG + chr3_4:61187195-61187214 Msa0511600:intron 35.0%
AGTCCTTAACGTAAGCTTAT+TGG + chr3_4:61187341-61187360 Msa0511600:intron 35.0%
AGTCCAATAAGCTTACGTTA+AGG - chr3_4:61187347-61187366 None:intergenic 35.0%
CCACACTTGTTCATTGTTAT+TGG - chr3_4:61187690-61187709 None:intergenic 35.0%
CCAATAACAATGAACAAGTG+TGG + chr3_4:61187687-61187706 Msa0511600:intron 35.0%
CGAGAGAAGAATAAGAGTTA+TGG + chr3_4:61187834-61187853 Msa0511600:CDS 35.0%
GCCTATATCAACAAACTTGA+TGG - chr3_4:61187862-61187881 None:intergenic 35.0%
AATTCTTCCCATAGCCTAAA+AGG - chr3_4:61188198-61188217 None:intergenic 35.0%
TTTCAACTTCTATGTAACCC+CGG + chr3_4:61188490-61188509 Msa0511600:intron 35.0%
AATGACATCCATTAATGCAG+AGG + chr3_4:61188575-61188594 Msa0511600:intron 35.0%
! AGTGAGAGTACAAATACTGA+GGG - chr3_4:61188609-61188628 None:intergenic 35.0%
!! TATTTTTACTGCAGGCGTTT+AGG + chr3_4:61188679-61188698 Msa0511600:intron 35.0%
CGCCATTACAAAATATGAAC+CGG + chr3_4:61188737-61188756 Msa0511600:CDS 35.0%
! TTCTGCGTCCTTTAAAAGTA+TGG - chr3_4:61188775-61188794 None:intergenic 35.0%
! TTTTCTGCAGCAAAGCTAAA+GGG - chr3_4:61188805-61188824 None:intergenic 35.0%
! TTTTTCTGCAGCAAAGCTAA+AGG - chr3_4:61188806-61188825 None:intergenic 35.0%
!! TTAGCTTTGCTGCAGAAAAA+TGG + chr3_4:61188806-61188825 Msa0511600:intron 35.0%
! AAATACCGTCTTCAAGTTAC+AGG + chr3_4:61188906-61188925 Msa0511600:CDS 35.0%
GCTAAAAGTAACACCTTAGA+TGG + chr3_4:61189000-61189019 Msa0511600:intron 35.0%
GTGATAATCTTATTGGTGGA+TGG - chr3_4:61189156-61189175 None:intergenic 35.0%
!!! TTTGTCCATTTTTGGTTTCC+AGG + chr3_4:61189321-61189340 Msa0511600:intron 35.0%
ATTAGAAGCTCGAAGAAAGA+AGG + chr3_4:61189365-61189384 Msa0511600:CDS 35.0%
TGTTTCGGCAGAATAAAATC+AGG + chr3_4:61189429-61189448 Msa0511600:intron 35.0%
AAATTTCCACAATATCCGAC+TGG + chr3_4:61189958-61189977 Msa0511600:exon 35.0%
!! TTCTGAAAGTTTTCACCAGT+CGG - chr3_4:61189976-61189995 None:intergenic 35.0%
CCTAATATTGCAGCAAAATC+TGG - chr3_4:61190096-61190115 None:intergenic 35.0%
! CCAGATTTTGCTGCAATATT+AGG + chr3_4:61190093-61190112 Msa0511600:three_prime_UTR 35.0%
CCTAAGAGACTAAGACTTAA+GGG - chr3_4:61190181-61190200 None:intergenic 35.0%
!! TTTCTGGTTTGGTTGTGGAT+TGG - chr3_4:61187009-61187028 None:intergenic 40.0%
! GTGAAAAGAGTGGTGATGAA+GGG - chr3_4:61187089-61187108 None:intergenic 40.0%
TGAAATGGAGGTGAAAAGAG+TGG - chr3_4:61187099-61187118 None:intergenic 40.0%
!! AGGAAGTGTTGGAAAAGCAT+CGG - chr3_4:61187160-61187179 None:intergenic 40.0%
! GGTTTGAGAATAGGAAGTGT+TGG - chr3_4:61187171-61187190 None:intergenic 40.0%
ACACTTCCTATTCTCAAACC+CGG + chr3_4:61187171-61187190 Msa0511600:CDS 40.0%
ATATTCGATTAGGGGATACC+GGG - chr3_4:61187192-61187211 None:intergenic 40.0%
GATATTCGATTAGGGGATAC+CGG - chr3_4:61187193-61187212 None:intergenic 40.0%
GACAACAGTCTCCTAAAGAT+TGG + chr3_4:61187603-61187622 Msa0511600:CDS 40.0%
! GACTAACAGTTTGATAGTCG+AGG - chr3_4:61187917-61187936 None:intergenic 40.0%
AACTGTTAGTCCCTTCTCTA+TGG + chr3_4:61187926-61187945 Msa0511600:intron 40.0%
!! CAGCTTTAGACCATAGAGAA+GGG - chr3_4:61187939-61187958 None:intergenic 40.0%
!! TCAGCTTTAGACCATAGAGA+AGG - chr3_4:61187940-61187959 None:intergenic 40.0%
AAGAAGCCATACTTCGACAT+CGG - chr3_4:61188252-61188271 None:intergenic 40.0%
TTTCAAAGATGCTGCCATTC+CGG - chr3_4:61188512-61188531 None:intergenic 40.0%
ACTGAAGTCCTCTGCATTAA+TGG - chr3_4:61188586-61188605 None:intergenic 40.0%
! CAGTGAGAGTACAAATACTG+AGG - chr3_4:61188610-61188629 None:intergenic 40.0%
TGTCATACGAATCTGTTCAG+TGG + chr3_4:61188628-61188647 Msa0511600:intron 40.0%
!! ATGAACAAGTTGGTCTTGGT+TGG + chr3_4:61188709-61188728 Msa0511600:CDS 40.0%
!! TGAACAAGTTGGTCTTGGTT+GGG + chr3_4:61188710-61188729 Msa0511600:CDS 40.0%
AGTATGGTAGGAAGACTAAC+CGG - chr3_4:61188759-61188778 None:intergenic 40.0%
! GCGTCCTTTAAAAGTATGGT+AGG - chr3_4:61188771-61188790 None:intergenic 40.0%
ATATGGTCACATGAGAAACC+CGG + chr3_4:61189073-61189092 Msa0511600:intron 40.0%
! TCAATAGTTCTATGCTTCCC+GGG - chr3_4:61189094-61189113 None:intergenic 40.0%
! CTCAATAGTTCTATGCTTCC+CGG - chr3_4:61189095-61189114 None:intergenic 40.0%
AAAACTTGCCTCCATGGTTA+TGG + chr3_4:61189248-61189267 Msa0511600:intron 40.0%
GTTAGTGGTTACCATAACCA+TGG - chr3_4:61189262-61189281 None:intergenic 40.0%
CACATAATCACTCTGGTTAG+TGG - chr3_4:61189277-61189296 None:intergenic 40.0%
ATAGACTAATCTTGGCAGTG+GGG - chr3_4:61189573-61189592 None:intergenic 40.0%
GATAGACTAATCTTGGCAGT+GGG - chr3_4:61189574-61189593 None:intergenic 40.0%
GCATACTTCACCCTGTAAAA+AGG - chr3_4:61189913-61189932 None:intergenic 40.0%
! TTTTCACCAGTCGGATATTG+TGG - chr3_4:61189967-61189986 None:intergenic 40.0%
GACTGGTGAAAACTTTCAGA+AGG + chr3_4:61189975-61189994 Msa0511600:three_prime_UTR 40.0%
TGCAGCAAAATCTGGAAAGA+AGG - chr3_4:61190088-61190107 None:intergenic 40.0%
TAAGACTTAAGGGAGACTAC+AGG - chr3_4:61190171-61190190 None:intergenic 40.0%
CCCTTAAGTCTTAGTCTCTT+AGG + chr3_4:61190178-61190197 Msa0511600:three_prime_UTR 40.0%
GCCTAAGAGACTAAGACTTA+AGG - chr3_4:61190182-61190201 None:intergenic 40.0%
!! GTTTGGTTGTGGATTGGAGA+TGG - chr3_4:61187003-61187022 None:intergenic 45.0%
! AGTGGTGATGAAGGGTTATG+GGG - chr3_4:61187081-61187100 None:intergenic 45.0%
! GAGTGGTGATGAAGGGTTAT+GGG - chr3_4:61187082-61187101 None:intergenic 45.0%
! AGAGTGGTGATGAAGGGTTA+TGG - chr3_4:61187083-61187102 None:intergenic 45.0%
! GGTGAAAAGAGTGGTGATGA+AGG - chr3_4:61187090-61187109 None:intergenic 45.0%
TTGTCCATTATGCATGCGAG+AGG + chr3_4:61187652-61187671 Msa0511600:CDS 45.0%
TGTACCTCTCGCATGCATAA+TGG - chr3_4:61187659-61187678 None:intergenic 45.0%
ACTTCTATGTAACCCCGGAA+TGG + chr3_4:61188495-61188514 Msa0511600:intron 45.0%
TTCAAAGATGCTGCCATTCC+GGG - chr3_4:61188511-61188530 None:intergenic 45.0%
TCACGTCAGTCCAACTAAAG+TGG - chr3_4:61189035-61189054 None:intergenic 45.0%
TATGGTCACATGAGAAACCC+GGG + chr3_4:61189074-61189093 Msa0511600:intron 45.0%
GAGAGAAAAACTTGCCTCCA+TGG + chr3_4:61189242-61189261 Msa0511600:intron 45.0%
AGTGGTTACCATAACCATGG+AGG - chr3_4:61189259-61189278 None:intergenic 45.0%
GGATGTGCACATAATCACTC+TGG - chr3_4:61189284-61189303 None:intergenic 45.0%
GTCGTCCTGGAAACCAAAAA+TGG - chr3_4:61189329-61189348 None:intergenic 45.0%
GGATAGACTAATCTTGGCAG+TGG - chr3_4:61189575-61189594 None:intergenic 45.0%
!! GGTTGTGGATTGGAGATGGA+AGG - chr3_4:61186999-61187018 None:intergenic 50.0%
GTGAAAGATGAGGACGGAGA+TGG - chr3_4:61187134-61187153 None:intergenic 50.0%
GGGATACCGGGTTTGAGAAT+AGG - chr3_4:61187180-61187199 None:intergenic 50.0%
TTACTCTCCCGACGAGAATC+AGG + chr3_4:61187890-61187909 Msa0511600:CDS 50.0%
TACTCTCCCGACGAGAATCA+GGG + chr3_4:61187891-61187910 Msa0511600:CDS 50.0%
GATTGGTGCATGCATGTGTG+AGG + chr3_4:61188117-61188136 Msa0511600:intron 50.0%
TCGTCACCGATGTCGAAGTA+TGG + chr3_4:61188243-61188262 Msa0511600:intron 50.0%
TCAAAGATGCTGCCATTCCG+GGG - chr3_4:61188510-61188529 None:intergenic 50.0%
CGGCGTGTGAAAGATGAGGA+CGG - chr3_4:61187140-61187159 None:intergenic 55.0%
! GCATCGGCGTGTGAAAGATG+AGG - chr3_4:61187144-61187163 None:intergenic 55.0%
! TCTTCTAGAGGTGGTCGTCC+TGG - chr3_4:61189342-61189361 None:intergenic 55.0%
TCGAGGCCCTGATTCTCGTC+GGG - chr3_4:61187900-61187919 None:intergenic 60.0%
GTCGAGGCCCTGATTCTCGT+CGG - chr3_4:61187901-61187920 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 61186970 61190303 61186970 ID=Msa0511600;Name=Msa0511600
chr3_4 mRNA 61186970 61190303 61186970 ID=Msa0511600-mRNA-1;Parent=Msa0511600;Name=Msa0511600-mRNA-1;_AED=0.19;_eAED=0.19;_QI=63|1|1|1|1|1|8|344|225
chr3_4 exon 61186970 61187192 61186970 ID=Msa0511600-mRNA-1:exon:14877;Parent=Msa0511600-mRNA-1
chr3_4 exon 61187531 61187673 61187531 ID=Msa0511600-mRNA-1:exon:14878;Parent=Msa0511600-mRNA-1
chr3_4 exon 61187822 61187929 61187822 ID=Msa0511600-mRNA-1:exon:14879;Parent=Msa0511600-mRNA-1
chr3_4 exon 61188203 61188259 61188203 ID=Msa0511600-mRNA-1:exon:14880;Parent=Msa0511600-mRNA-1
chr3_4 exon 61188693 61188758 61188693 ID=Msa0511600-mRNA-1:exon:14881;Parent=Msa0511600-mRNA-1
chr3_4 exon 61188867 61188927 61188867 ID=Msa0511600-mRNA-1:exon:14882;Parent=Msa0511600-mRNA-1
chr3_4 exon 61189343 61189386 61189343 ID=Msa0511600-mRNA-1:exon:14883;Parent=Msa0511600-mRNA-1
chr3_4 exon 61189921 61190303 61189921 ID=Msa0511600-mRNA-1:exon:14884;Parent=Msa0511600-mRNA-1
chr3_4 five_prime_UTR 61186970 61187032 61186970 ID=Msa0511600-mRNA-1:five_prime_utr;Parent=Msa0511600-mRNA-1
chr3_4 CDS 61187033 61187192 61187033 ID=Msa0511600-mRNA-1:cds;Parent=Msa0511600-mRNA-1
chr3_4 CDS 61187531 61187673 61187531 ID=Msa0511600-mRNA-1:cds;Parent=Msa0511600-mRNA-1
chr3_4 CDS 61187822 61187929 61187822 ID=Msa0511600-mRNA-1:cds;Parent=Msa0511600-mRNA-1
chr3_4 CDS 61188203 61188259 61188203 ID=Msa0511600-mRNA-1:cds;Parent=Msa0511600-mRNA-1
chr3_4 CDS 61188693 61188758 61188693 ID=Msa0511600-mRNA-1:cds;Parent=Msa0511600-mRNA-1
chr3_4 CDS 61188867 61188927 61188867 ID=Msa0511600-mRNA-1:cds;Parent=Msa0511600-mRNA-1
chr3_4 CDS 61189343 61189386 61189343 ID=Msa0511600-mRNA-1:cds;Parent=Msa0511600-mRNA-1
chr3_4 CDS 61189921 61189959 61189921 ID=Msa0511600-mRNA-1:cds;Parent=Msa0511600-mRNA-1
chr3_4 three_prime_UTR 61189960 61190303 61189960 ID=Msa0511600-mRNA-1:three_prime_utr;Parent=Msa0511600-mRNA-1
Gene Sequence

>Msa0511600

ATGTCTTTCAGAATCGCAGCAGTTTCTGCTTCTCGTATTGCAAAACCCCATAACCCTTCATCACCACTCTTTTCACCTCCATTTCACAATCTTAAATTCCATCTCCGTCCTCATCTTTCACACGCCGATGCTTTTCCAACACTTCCTATTCTCAAACCCGGGTCTCAATGTTATATTCGAGCTATTAGTGATAGAGCTGTAGAATCTACAATTTCTAAGAAAGAAGAGGAGGGACAACAGTCTCCTAAAGATTGGAAGATTAAAATGCTATATGATGGAGATTGTCCATTATGCATGCGAGAGGTGAATATGCTACGAGAGAAGAATAAGAGTTATGGCACCATCAAGTTTGTTGATATAGGCTCAGATGATTACTCTCCCGACGAGAATCAGGGCCTCGACTATCAAACTGCTATGGGAAGAATTCATGCTATTCTATCAGATGGAACTGTCGTCACCGATGTCGAAGCGTTTAGGAGATTATATGAACAAGTTGGTCTTGGTTGGGTTTACGCCATTACAAAATATGAACCGATTGGGAAAATTGCTGATTCTGTATATAGTTTTTGGGCTAAATACCGTCTTCAAGTTACAGGACGACCACCTCTAGAAGAAATATTAGAAGCTCGAAGAAAGAAGGGTGAAGTATGCAAAGACAACGATGCTTGCAAGATGTAA

Protein sequence

>Msa0511600

MSFRIAAVSASRIAKPHNPSSPLFSPPFHNLKFHLRPHLSHADAFPTLPILKPGSQCYIRAISDRAVESTISKKEEEGQQSPKDWKIKMLYDGDCPLCMREVNMLREKNKSYGTIKFVDIGSDDYSPDENQGLDYQTAMGRIHAILSDGTVVTDVEAFRRLYEQVGLGWVYAITKYEPIGKIADSVYSFWAKYRLQVTGRPPLEEILEARRKKGEVCKDNDACKM*