AlfalfaGEDB | Msa0050580

M. sativa cultivar zhongmu-4 / Msa0050580

KEGG: K04077
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051082 GO:0061077 GO:0070013 GO:0071840 GO:1990904
PFAM: PF00118.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0050580	XP_013465955.1	92.562	605	5	3	1	579	1	591	0.0	1087

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0050580	sp\|P08927\|RUBB_PEA	87.043	602	38	3	3	578	6	593	0.0	1017

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0050580	A0A072VEG8	92.562	605	5	3	1	579	1	591	0.0	1087

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0050580	0.825328	4.975906e-54	-8.615850e-47
Msa0001950	Msa0050580	0.948618	6.599495e-107	-8.615850e-47
Msa0003470	Msa0050580	0.843499	1.349961e-58	-8.615850e-47
Msa0004360	Msa0050580	0.802251	6.129366e-49	-8.615850e-47
Msa0007450	Msa0050580	0.804383	2.217707e-49	-8.615850e-47
Msa0008830	Msa0050580	0.805180	1.512051e-49	-8.615850e-47
Msa0012460	Msa0050580	0.804981	1.663927e-49	-8.615850e-47
Msa0017120	Msa0050580	0.848012	8.035768e-60	-8.615850e-47
Msa0017940	Msa0050580	0.929144	1.058302e-92	-8.615850e-47
Msa0024680	Msa0050580	0.860834	1.567043e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0050580	MtrunA17_Chr1g0152141	92.562	605	5	3	1	579	1	591	0.0	1087
Msa0050580	MtrunA17_Chr1g0152151	92.066	605	8	3	1	579	1	591	0.0	1083
Msa0050580	MtrunA17_Chr5g0421251	63.209	511	142	3	21	505	17	507	0.0	628
Msa0050580	MtrunA17_Chr4g0028601	47.078	599	267	8	6	571	1	582	2.24e-169	493
Msa0050580	MtrunA17_Chr4g0043731	45.355	549	255	8	44	564	37	568	1.84e-154	455
Msa0050580	MtrunA17_Chr1g0196761	41.582	594	292	7	11	573	4	573	7.50e-146	433
Msa0050580	MtrunA17_Chr1g0196751	42.778	540	265	5	48	560	34	556	1.22e-141	422
Msa0050580	MtrunA17_Chr8g0342341	39.823	565	287	7	46	573	27	575	6.94e-130	392
Msa0050580	MtrunA17_Chr5g0421241	54.217	83	21	2	512	578	3	84	3.46e-19	82.4
Msa0050580	MtrunA17_Chr7g0241881	35.659	129	75	3	66	192	26	148	9.84e-11	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0050580	AT1G55490.5	84.683	568	47	3	37	578	46	599	938
Msa0050580	AT1G55490.1	84.683	568	47	3	37	578	46	599	938
Msa0050580	AT1G55490.3	84.683	568	47	3	37	578	46	599	938
Msa0050580	AT1G55490.4	84.683	568	47	3	37	578	46	599	938
Msa0050580	AT1G55490.2	84.683	568	47	3	37	578	46	599	938
Msa0050580	AT3G13470.1	83.803	568	52	3	37	578	42	595	932
Msa0050580	AT5G56500.2	83.158	570	55	4	37	579	42	597	922
Msa0050580	AT5G56500.1	83.158	570	55	4	37	579	42	597	922
Msa0050580	AT1G26230.1	62.799	586	178	3	13	571	4	576	728
Msa0050580	AT1G26230.4	64.662	532	149	2	66	571	6	524	692

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Find 181 sgRNAs with CRISPR-Local

Find 483 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGAAGATTTAATGT+CGG	0.572459	1_2:+4519540	Msa0050580:CDS
AAACAATCTGTATGTTGTTG+AGG	0.570389	1_2:+4517657	Msa0050580:CDS
AAAGATACAACCACAATAGT+TGG	0.489610	1_2:+4518302	Msa0050580:CDS
AAAGCTGGGAATGAGGTTCT+AGG	0.414128	1_2:+4518254	Msa0050580:CDS
AAAGGGTGTCGTGACACTTG+AGG	0.659317	1_2:+4517618	Msa0050580:CDS
AAATGGCAGCGGAGGAAGAG+AGG	0.551209	1_2:-4515227	None:intergenic
AACAAGCTTGCGGATTTGGT+TGG	0.576745	1_2:+4515486	Msa0050580:CDS
AACAATCTGTATGTTGTTGA+GGG	0.571719	1_2:+4517658	Msa0050580:CDS
AACCCTGTGCTTATCACACG+TGG	0.648183	1_2:+4516302	Msa0050580:CDS
AACCTCTCCGAGATTATTTC+CGG	0.312252	1_2:-4521744	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGTTGAAATACAACTCCT+TGG	-	chr1_2:4515343-4515362	None:intergenic	30.0%
GAGTTGTATTTCAACAAAGA+TGG	+	chr1_2:4515345-4515364	Msa0050580:CDS	30.0%
TCTCCTAAGATTGTTAATGA+TGG	+	chr1_2:4515561-4515580	Msa0050580:CDS	30.0%
ACACCATCATTAACAATCTT+AGG	-	chr1_2:4515567-4515586	None:intergenic	30.0%
TTTGGTGAATTAGTTATGTG+GGG	+	chr1_2:4515821-4515840	Msa0050580:intron	30.0%
TTACATTTGCGTTAAAAAGG+TGG	+	chr1_2:4516018-4516037	Msa0050580:intron	30.0%
AACTAATAATGTGCTTGGTT+TGG	+	chr1_2:4516204-4516223	Msa0050580:intron	30.0%
TGAAGAAATGATAATCAGTG+AGG	+	chr1_2:4516717-4516736	Msa0050580:intron	30.0%
GAAGAAATGATAATCAGTGA+GGG	+	chr1_2:4516718-4516737	Msa0050580:intron	30.0%
AAGAAATGATAATCAGTGAG+GGG	+	chr1_2:4516719-4516738	Msa0050580:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	4515064	4522007	4515064	ID=Msa0050580;Name=Msa0050580
chr1_2	mRNA	4515064	4522007	4515064	ID=Msa0050580-mRNA-1;Parent=Msa0050580;Name=Msa0050580-mRNA-1;_AED=0.15;_eAED=0.15;_QI=134\|0.84\|0.92\|1\|0.84\|0.85\|14\|397\|579
chr1_2	exon	4515064	4515389	4515064	ID=Msa0050580-mRNA-1:exon:1193;Parent=Msa0050580-mRNA-1
chr1_2	exon	4515477	4515602	4515477	ID=Msa0050580-mRNA-1:exon:1194;Parent=Msa0050580-mRNA-1
chr1_2	exon	4516037	4516174	4516037	ID=Msa0050580-mRNA-1:exon:1195;Parent=Msa0050580-mRNA-1
chr1_2	exon	4516284	4516379	4516284	ID=Msa0050580-mRNA-1:exon:1196;Parent=Msa0050580-mRNA-1
chr1_2	exon	4517520	4517762	4517520	ID=Msa0050580-mRNA-1:exon:1197;Parent=Msa0050580-mRNA-1
chr1_2	exon	4517854	4518088	4517854	ID=Msa0050580-mRNA-1:exon:1198;Parent=Msa0050580-mRNA-1
chr1_2	exon	4518177	4518385	4518177	ID=Msa0050580-mRNA-1:exon:1199;Parent=Msa0050580-mRNA-1
chr1_2	exon	4518879	4518950	4518879	ID=Msa0050580-mRNA-1:exon:1200;Parent=Msa0050580-mRNA-1
chr1_2	exon	4519029	4519133	4519029	ID=Msa0050580-mRNA-1:exon:1201;Parent=Msa0050580-mRNA-1
chr1_2	exon	4519317	4519409	4519317	ID=Msa0050580-mRNA-1:exon:1202;Parent=Msa0050580-mRNA-1
chr1_2	exon	4519493	4519585	4519493	ID=Msa0050580-mRNA-1:exon:1203;Parent=Msa0050580-mRNA-1
chr1_2	exon	4521027	4521150	4521027	ID=Msa0050580-mRNA-1:exon:1204;Parent=Msa0050580-mRNA-1
chr1_2	exon	4521502	4521809	4521502	ID=Msa0050580-mRNA-1:exon:1205;Parent=Msa0050580-mRNA-1
chr1_2	exon	4521905	4522007	4521905	ID=Msa0050580-mRNA-1:exon:1206;Parent=Msa0050580-mRNA-1
chr1_2	five_prime_UTR	4515064	4515197	4515064	ID=Msa0050580-mRNA-1:five_prime_utr;Parent=Msa0050580-mRNA-1
chr1_2	CDS	4515198	4515389	4515198	ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2	CDS	4515477	4515602	4515477	ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2	CDS	4516037	4516174	4516037	ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2	CDS	4516284	4516379	4516284	ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2	CDS	4517520	4517762	4517520	ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2	CDS	4517854	4518088	4517854	ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2	CDS	4518177	4518385	4518177	ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2	CDS	4518879	4518950	4518879	ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2	CDS	4519029	4519133	4519029	ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2	CDS	4519317	4519409	4519317	ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2	CDS	4519493	4519585	4519493	ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2	CDS	4521027	4521150	4521027	ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2	CDS	4521502	4521515	4521502	ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2	three_prime_UTR	4521516	4521809	4521516	ID=Msa0050580-mRNA-1:three_prime_utr;Parent=Msa0050580-mRNA-1
chr1_2	three_prime_UTR	4521905	4522007	4521905	ID=Msa0050580-mRNA-1:three_prime_utr;Parent=Msa0050580-mRNA-1

Gene Sequence

>Msa0050580

ATGGCATCATGCAACCTCTCCTCATGCAACCTCTCTTCCTCCGCTGCCATTTCTTCATTCCCATCTTCTTCCGCCCGCAGAAAAACCACCAGCAACGTCGCTCTCACCAGGAAGAATCGGAGCCCTAAAGTCTCAGCCATGGCCAAGGAGTTGTATTTCAACAAAGATGGTTCCGCTATCAAGAAACTCCAGAATGGTGTGAACAAGCTTGCGGATTTGGTTGGTGTTACTCTTGGTCCTAAGGGAAGGAATGTTGTTCTTGAGAGCAAGTATGGTTCTCCTAAGATTGTTAATGATGGTGTCACTGTTGCCAGAGAGGTGGAGTTGGAGGATCCAGTTGAGAATATTGGTGCTAAATTGGTTAGACAGGCAGCCGCCAAGACAAATGATTTGGCAGGCGATGGAACTACTACCTCTGTTGTTTTGGCTCAGGGTCTTATTGCAGAAGGTGTTAAGGTTGTTGCAGCTGGTGCAAACCCTGTGCTTATCACACGTGGTATTGAGAAGACAGCGAAAGCTCTTGTTGCTGAACTTAAACTAATGTCAAAAGAGGTTGAGGATAGTGAATTGGCTGATGTGGCAGCAGTTAGTGCAGGGAACAATCATGAGGTAGGAAATATGATAGCTGAGGCGTTGAGTAAGGTTGGTAGAAAGGGTGTCGTGACACTTGAGGAGGGAAGGAGTGCTGAAAACAATCTGTATGTTGTTGAGGGCATGCAATTTGATCGAGGATATATTTCACCGTACTTTGTTACAGACAGTGAGAAAATGACCGTTGAATTTGAGAACTGCAAGTTGCTTTTAGTTGACAAAAAGATATCCAATGCAAGGGATCTTATTAACATACTAGAGGACGCAATTAGAAACGGATTCCCTATTTTGATAATTGCAGAGGATATTGAACAAGAAGCTTTGGCAACTCTTGTTGTGAACAAACTTAGAGGATCACTGAAGATTGCAGCACTTAAGGCTCCTGGATTTGGAGAACGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACAGGAGCTGTTGGTAACAATATGTATCTTCCTAATTCGCTTACAGGTACTGTTATCAGAGAGGAGGTTGGACTTAGCTTAGACAAAGCTGGGAATGAGGTTCTAGGCACTGCGGCCAAGGTGGTGCTCACCAAAGATACAACCACAATAGTTGGTGATGGAAGTACCCAAGAAGCAGTTACCAAGCGAGTTTCACAAATTAAGAACCAAATTGAGGTTGGTGCACAAACTGAGACAGAACTCAAGGAAAAGAAATTGAGAGTTGAGGACGCTCTTAATGCCACAAAGGCCGCTGTTGAGGAGGGTATTGTAGTTGGCGGTGGGTGCACTTTGCTCAGACTTGCATCAAAGGTGGATGCAATCAAGGCTACCCTTGCAAATGATGAAGAAAAAGTTGGAGCAGACATTGTTAAAAGAGCTCTTAGTTACCCTCTGAAATTAATAGCAAAAAATGCTGGTGTAAATGGCAGTGTTGTTAGTGAGAAGGTTCTATCCAACGACAATACGAGATACGGATATAATGCTGCAACTGGAAAATATGAAGATTTAATGTCGGCTGGGATCATTGATCCAACAAAGGTGGTCAGATGTTGCTTGGAACATGCAGCCTCTGTTGCGAAAACATTCTTAATGTCAGACTGTGTTGTTGTTGAGATAAAGGAACCTGAGGCTGCACCTGTTGGTAACCCAATGGACAATTCAGGATTCGGCATGTAG

Protein sequence

>Msa0050580

MASCNLSSCNLSSSAAISSFPSSSARRKTTSNVALTRKNRSPKVSAMAKELYFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTAKALVAELKLMSKEVEDSELADVAAVSAGNNHEVGNMIAEALSKVGRKGVVTLEEGRSAENNLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLLVDKKISNARDLINILEDAIRNGFPILIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGAVGNNMYLPNSLTGTVIREEVGLSLDKAGNEVLGTAAKVVLTKDTTTIVGDGSTQEAVTKRVSQIKNQIEVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNTRYGYNAATGKYEDLMSAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEAAPVGNPMDNSGFGM*