AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050580 MtrunA17_Chr1g0152141 92.562 605 5 3 1 579 1 591 0.0 1087
Msa0050580 MtrunA17_Chr1g0152151 92.066 605 8 3 1 579 1 591 0.0 1083
Msa0050580 MtrunA17_Chr5g0421251 63.209 511 142 3 21 505 17 507 0.0 628
Msa0050580 MtrunA17_Chr4g0028601 47.078 599 267 8 6 571 1 582 2.24e-169 493
Msa0050580 MtrunA17_Chr4g0043731 45.355 549 255 8 44 564 37 568 1.84e-154 455
Msa0050580 MtrunA17_Chr1g0196761 41.582 594 292 7 11 573 4 573 7.50e-146 433
Msa0050580 MtrunA17_Chr1g0196751 42.778 540 265 5 48 560 34 556 1.22e-141 422
Msa0050580 MtrunA17_Chr8g0342341 39.823 565 287 7 46 573 27 575 6.94e-130 392
Msa0050580 MtrunA17_Chr5g0421241 54.217 83 21 2 512 578 3 84 3.46e-19 82.4
Msa0050580 MtrunA17_Chr7g0241881 35.659 129 75 3 66 192 26 148 9.84e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050580 AT1G55490.5 84.683 568 47 3 37 578 46 599 0.0 938
Msa0050580 AT1G55490.1 84.683 568 47 3 37 578 46 599 0.0 938
Msa0050580 AT1G55490.3 84.683 568 47 3 37 578 46 599 0.0 938
Msa0050580 AT1G55490.4 84.683 568 47 3 37 578 46 599 0.0 938
Msa0050580 AT1G55490.2 84.683 568 47 3 37 578 46 599 0.0 938
Msa0050580 AT3G13470.1 83.803 568 52 3 37 578 42 595 0.0 932
Msa0050580 AT5G56500.2 83.158 570 55 4 37 579 42 597 0.0 922
Msa0050580 AT5G56500.1 83.158 570 55 4 37 579 42 597 0.0 922
Msa0050580 AT1G26230.1 62.799 586 178 3 13 571 4 576 0.0 728
Msa0050580 AT1G26230.4 64.662 532 149 2 66 571 6 524 0.0 692
Msa0050580 AT1G26230.3 64.962 528 146 2 70 571 2 516 0.0 691
Msa0050580 AT1G26230.2 60.728 522 165 3 13 507 4 512 0.0 619
Msa0050580 AT1G26230.5 59.513 452 143 3 13 437 4 442 0.0 522
Msa0050580 AT2G28000.1 48.000 550 242 7 37 559 37 569 5.26e-164 480
Msa0050580 AT2G33210.1 42.509 574 281 8 22 566 9 562 6.50e-145 431
Msa0050580 AT3G23990.1 41.538 585 286 7 8 565 5 560 3.28e-144 429
Msa0050580 AT2G33210.2 42.334 574 277 9 22 566 9 557 3.34e-141 421
Msa0050580 AT5G18820.1 43.793 580 274 12 18 566 7 565 1.32e-138 415
Msa0050580 AT3G13860.1 41.753 582 283 9 27 579 18 572 2.51e-137 411
Msa0050580 AT5G18820.2 43.524 471 223 7 125 566 3 459 2.24e-110 338
Msa0050580 AT5G18820.3 43.377 385 198 6 44 427 31 396 4.29e-91 288

Find 181 sgRNAs with CRISPR-Local

Find 483 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCCATGGCTGAGACTTT+AGG 0.154088 1_2:-4515321 None:intergenic
TCCTCTGCAATTATCAAAAT+AGG 0.166829 1_2:-4517932 None:intergenic
TGGCCATGGCTGAGACTTTA+GGG 0.222791 1_2:-4515320 None:intergenic
AACTACTACCTCTGTTGTTT+TGG 0.233024 1_2:+4516123 Msa0050580:CDS
TATCTTCCTAATTCGCTTAC+AGG 0.233284 1_2:+4518194 Msa0050580:CDS
TGAGAATATTGGTGCTAAAT+TGG 0.241648 1_2:+4516057 Msa0050580:CDS
TTTCGATGTAATACACAATT+TGG 0.242586 1_2:+4521560 Msa0050580:three_prime_UTR
CTTGAGCTAATAATTGAAAA+AGG 0.257378 1_2:+4521663 Msa0050580:three_prime_UTR
GCACTTAAGGCTCCTGGATT+TGG 0.266390 1_2:+4518019 Msa0050580:CDS
ACAGTACCTGTAAGCGAATT+AGG 0.270395 1_2:-4518200 None:intergenic
AACTATTGTGGTTGTATCTT+TGG 0.272759 1_2:-4518300 None:intergenic
AATCTATAAATCACCTTTGT+TGG 0.276775 1_2:-4519577 None:intergenic
GGCTAGGGTTTAAGAGGATT+TGG 0.287170 1_2:-4515148 None:intergenic
CTCGCTTGGTAACTGCTTCT+TGG 0.288189 1_2:-4518337 None:intergenic
GAAGTGGCGGCTGCTTAAAA+TGG 0.296002 1_2:+4521515 Msa0050580:exon
GGTTTAAGAGGATTTGGTTT+TGG 0.307959 1_2:-4515142 None:intergenic
AACCTCTCCGAGATTATTTC+CGG 0.312252 1_2:-4521744 None:intergenic
TTAAGAATGTTAGTTCATTC+TGG 0.312839 1_2:-4521944 None:intergenic
TGTGAACAAGCTTGCGGATT+TGG 0.336342 1_2:+4515482 Msa0050580:CDS
AATGGTGGCTAGGGTTTAAG+AGG 0.350032 1_2:-4515154 None:intergenic
ACACCATCATTAACAATCTT+AGG 0.351092 1_2:-4515564 None:intergenic
CCTGGTGAGAGCGACGTTGC+TGG 0.360381 1_2:-4515286 None:intergenic
TTTAGGGCTCCGATTCTTCC+TGG 0.368398 1_2:-4515304 None:intergenic
CCTCTGCAATTATCAAAATA+GGG 0.385162 1_2:-4517931 None:intergenic
TGCAGGGAATTGAGAGAAAA+TGG 0.386798 1_2:-4515172 None:intergenic
CTGTGTTGTTGTTGAGATAA+AGG 0.387501 1_2:+4521086 Msa0050580:CDS
TCGCTTGGTAACTGCTTCTT+GGG 0.387602 1_2:-4518336 None:intergenic
GTTGTTCTTGAGAGCAAGTA+TGG 0.388399 1_2:+4515537 Msa0050580:CDS
TGGTGTTACTCTTGGTCCTA+AGG 0.393067 1_2:+4515506 Msa0050580:CDS
TTAATAAAAGTAAAATATAC+TGG 0.394422 1_2:-4521703 None:intergenic
ACTGAAGATTGCAGCACTTA+AGG 0.394593 1_2:+4518006 Msa0050580:CDS
TACGGATATAATGCTGCAAC+TGG 0.399922 1_2:+4519517 Msa0050580:CDS
CTTGTTGTGAACAAACTTAG+AGG 0.403832 1_2:+4517980 Msa0050580:CDS
TTGCATGATGCCATGGTTGC+AGG 0.405618 1_2:-4515189 None:intergenic
ACCTCTCCGAGATTATTTCC+GGG 0.406399 1_2:-4521743 None:intergenic
GAATGGAGGATGAAACTATT+AGG 0.407847 1_2:-4515091 None:intergenic
AGCCGCCAAGACAAATGATT+TGG 0.408630 1_2:+4516090 Msa0050580:CDS
GGTAACCCAATGGACAATTC+AGG 0.411976 1_2:+4521129 Msa0050580:CDS
GGATATTGAACAAGAAGCTT+TGG 0.413311 1_2:+4517952 Msa0050580:CDS
AAAGCTGGGAATGAGGTTCT+AGG 0.414128 1_2:+4518254 Msa0050580:CDS
GTTGAGGAGGGTATTGTAGT+TGG 0.422734 1_2:+4519035 Msa0050580:CDS
GATGATATTGCCATCTTGAC+AGG 0.432753 1_2:+4518064 Msa0050580:CDS
TTAGCACCAATATTCTCAAC+TGG 0.436766 1_2:-4516052 None:intergenic
GAGGATCCAGTTGAGAATAT+TGG 0.438153 1_2:+4516046 Msa0050580:CDS
TTGTCCATTGGGTTACCAAC+AGG 0.439504 1_2:-4521123 None:intergenic
TATGAAGATTTAATGTCGGC+TGG 0.440375 1_2:+4519544 Msa0050580:CDS
GAGGGTATTGTAGTTGGCGG+TGG 0.446592 1_2:+4519041 Msa0050580:CDS
GTTGAGTAAGGTTGGTAGAA+AGG 0.446649 1_2:+4517600 Msa0050580:CDS
TAGAAAGTTATTTATACTCA+TGG 0.447469 1_2:+4521773 Msa0050580:three_prime_UTR
TGGTGCTAAATTGGTTAGAC+AGG 0.448444 1_2:+4516066 Msa0050580:CDS
ATTGCAGCACTTAAGGCTCC+TGG 0.453971 1_2:+4518013 Msa0050580:CDS
CTCTCAATTCCCTGCAACCA+TGG 0.454827 1_2:+4515179 Msa0050580:exon
GGACTTAGCTTAGACAAAGC+TGG 0.456634 1_2:+4518239 Msa0050580:CDS
CTTAATTTGTGAAACTCGCT+TGG 0.457406 1_2:-4518351 None:intergenic
ACAAATTAAGAACCAAATTG+AGG 0.459257 1_2:+4518364 Msa0050580:CDS
GCCTGCCAAATCATTTGTCT+TGG 0.460705 1_2:-4516095 None:intergenic
TCTTATTGCAGAAGGTGTTA+AGG 0.461521 1_2:+4516153 Msa0050580:CDS
TATTTATAGGAGCTCATTGT+CGG 0.463192 1_2:+4521896 Msa0050580:intron
TTGTTGCTCGGAATTGAGAA+TGG 0.466091 1_2:-4515108 None:intergenic
TTTGTTGAAATACAACTCCT+TGG 0.469848 1_2:-4515340 None:intergenic
TACATACCTGAATTGTCCAT+TGG 0.470599 1_2:-4521135 None:intergenic
ACAGCCGTCTGTCCTACATT+TGG 0.471551 1_2:-4521609 None:intergenic
GAAAGATTAAGTCACCTTTG+TGG 0.473592 1_2:-4518943 None:intergenic
GGAGGATGAAACTATTAGGT+AGG 0.475875 1_2:-4515087 None:intergenic
GAGTTGTATTTCAACAAAGA+TGG 0.475978 1_2:+4515345 Msa0050580:CDS
TTGAGAGAAAATGGTGGCTA+GGG 0.476871 1_2:-4515163 None:intergenic
GATTTGGTTGGTGTTACTCT+TGG 0.477460 1_2:+4515498 Msa0050580:CDS
TTCTGCGGGCGGAAGAAGAT+GGG 0.478610 1_2:-4515257 None:intergenic
GACTTAGCTTAGACAAAGCT+GGG 0.483882 1_2:+4518240 Msa0050580:CDS
GATAGCTGAGGCGTTGAGTA+AGG 0.484566 1_2:+4517588 Msa0050580:CDS
GTCTGTCCTACATTTGGACT+TGG 0.486866 1_2:-4521603 None:intergenic
CCAGGTGGTCAGATGTTGCT+TGG 0.488161 1_2:+4521023 Msa0050580:intron
AAAGATACAACCACAATAGT+TGG 0.489610 1_2:+4518302 Msa0050580:CDS
GCAGGTTGAGGATAGTGAAT+TGG 0.491700 1_2:+4517516 Msa0050580:intron
ATCAAAGGTGGATGCAATCA+AGG 0.491996 1_2:+4519085 Msa0050580:CDS
CTTTCAGGCCGCTGTTGAGG+AGG 0.494985 1_2:+4519022 Msa0050580:intron
GTTAATAAGATCCCTTGCAT+TGG 0.496312 1_2:-4517879 None:intergenic
TGGCAATATCATCAAGGTAC+TGG 0.496736 1_2:-4518054 None:intergenic
CTCTTGCGTTCTCCAAATCC+AGG 0.496984 1_2:-4518031 None:intergenic
ACTCTAAACACACACCTCTC+TGG 0.499764 1_2:-4515595 None:intergenic
TGCCAAATCATTTGTCTTGG+CGG 0.501395 1_2:-4516092 None:intergenic
TCGCTCTCACCAGGAAGAAT+CGG 0.502728 1_2:+4515295 Msa0050580:CDS
TTACTTTCAGGCCGCTGTTG+AGG 0.503371 1_2:+4519019 Msa0050580:intron
AGAAGATGGGAATGAAGAAA+TGG 0.505552 1_2:-4515244 None:intergenic
ACATACCTGAATTGTCCATT+GGG 0.507022 1_2:-4521134 None:intergenic
GGTGTTACTCTTGGTCCTAA+GGG 0.507915 1_2:+4515507 Msa0050580:CDS
TTTGCTCAGACTTGCATCAA+AGG 0.510939 1_2:+4519070 Msa0050580:CDS
AGGGTATTGTAGTTGGCGGT+GGG 0.514410 1_2:+4519042 Msa0050580:CDS
GCTCAGGGTCTTATTGCAGA+AGG 0.514992 1_2:+4516145 Msa0050580:CDS
TTACCAACAGGTGCAGCCTC+AGG 0.516329 1_2:-4521111 None:intergenic
TTGAGTAAGGTTGGTAGAAA+GGG 0.519613 1_2:+4517601 Msa0050580:CDS
AAGTGGCGGCTGCTTAAAAT+GGG 0.519821 1_2:+4521516 Msa0050580:three_prime_UTR
GAGGATGAAACTATTAGGTA+GGG 0.520347 1_2:-4515086 None:intergenic
ACAAATGATTTGGCAGGCGA+TGG 0.521838 1_2:+4516100 Msa0050580:CDS
AGAAAGTTATTTATACTCAT+GGG 0.522148 1_2:+4521774 Msa0050580:three_prime_UTR
TCCGTATCTCGTATTGTCGT+TGG 0.522553 1_2:-4519500 None:intergenic
TCTCCTAAGATTGTTAATGA+TGG 0.522934 1_2:+4515561 Msa0050580:CDS
ATTGAGAGAAAATGGTGGCT+AGG 0.523158 1_2:-4515164 None:intergenic
CTTAGACAAAGCTGGGAATG+AGG 0.523660 1_2:+4518247 Msa0050580:CDS
GGTTCTAGGCACTGCGGCCA+AGG 0.525331 1_2:+4518268 Msa0050580:CDS
TTTCTGCGGGCGGAAGAAGA+TGG 0.527764 1_2:-4515258 None:intergenic
CCAGCAACGTCGCTCTCACC+AGG 0.531654 1_2:+4515286 Msa0050580:CDS
GCCAAGACAAATGATTTGGC+AGG 0.531683 1_2:+4516094 Msa0050580:CDS
ATCTTTGGTGAGCACCACCT+TGG 0.533468 1_2:-4518285 None:intergenic
AGAACAACATTCCTTCCCTT+AGG 0.535555 1_2:-4515522 None:intergenic
TCACTGTCTGTAACAAAGTA+CGG 0.537279 1_2:-4517709 None:intergenic
ATACCACGTGTGATAAGCAC+AGG 0.537355 1_2:-4516305 None:intergenic
GATGTGGCAGCAGTTAGTGC+AGG 0.549028 1_2:+4517541 Msa0050580:CDS
TTATAAACCTCCTGTCAAGA+TGG 0.550939 1_2:-4518074 None:intergenic
AAATGGCAGCGGAGGAAGAG+AGG 0.551209 1_2:-4515227 None:intergenic
ACTTCCATCACCAACTATTG+TGG 0.557957 1_2:-4518312 None:intergenic
CTAGAGGACGCAATTAGAAA+CGG 0.558599 1_2:+4517905 Msa0050580:CDS
GAGGAGGGTATTGTAGTTGG+CGG 0.560061 1_2:+4519038 Msa0050580:CDS
TCCAACGACAATACGAGATA+CGG 0.561582 1_2:+4519499 Msa0050580:CDS
AAGAGAGGTTGCATGAGGAG+AGG 0.563023 1_2:-4515212 None:intergenic
TTTCAGGCCGCTGTTGAGGA+GGG 0.565478 1_2:+4519023 Msa0050580:intron
ATGAAGATTTAATGTCGGCT+GGG 0.566175 1_2:+4519545 Msa0050580:CDS
AAACAATCTGTATGTTGTTG+AGG 0.570389 1_2:+4517657 Msa0050580:CDS
AACAATCTGTATGTTGTTGA+GGG 0.571719 1_2:+4517658 Msa0050580:CDS
GAACCTGAGGCTGCACCTGT+TGG 0.571946 1_2:+4521108 Msa0050580:CDS
AAAATATGAAGATTTAATGT+CGG 0.572459 1_2:+4519540 Msa0050580:CDS
ACTTAAACTAATGTCAAAAG+AGG 0.575994 1_2:+4516358 Msa0050580:CDS
AACAAGCTTGCGGATTTGGT+TGG 0.576745 1_2:+4515486 Msa0050580:CDS
TTCCGCTATCAAGAAACTCC+AGG 0.579355 1_2:+4515368 Msa0050580:CDS
GCTGAGGCGTTGAGTAAGGT+TGG 0.581310 1_2:+4517592 Msa0050580:CDS
TGGCAGTGTTGTTAGTGAGA+AGG 0.588442 1_2:+4519388 Msa0050580:CDS
TAAAGTCTCAGCCATGGCCA+AGG 0.591758 1_2:+4515323 Msa0050580:CDS
TCTAGGCACTGCGGCCAAGG+TGG 0.592690 1_2:+4518271 Msa0050580:CDS
CGTGTTCCCGGAAATAATCT+CGG 0.593184 1_2:+4521737 Msa0050580:three_prime_UTR
TTACTCTTGGTCCTAAGGGA+AGG 0.596314 1_2:+4515511 Msa0050580:CDS
ACAACCACAATAGTTGGTGA+TGG 0.599514 1_2:+4518308 Msa0050580:CDS
GCAGGGAACAATCATGAGGT+AGG 0.602361 1_2:+4517559 Msa0050580:CDS
TAGGATTCGGCATGTAGAAG+TGG 0.603770 1_2:+4521499 Msa0050580:intron
CACCTGGAGTTTCTTGATAG+CGG 0.605493 1_2:-4515370 None:intergenic
TCAAGATGGCAATATCATCA+AGG 0.606055 1_2:-4518060 None:intergenic
TCGTGACACTTGAGGAGGGA+AGG 0.606314 1_2:+4517626 Msa0050580:CDS
AGGATGAAACTATTAGGTAG+GGG 0.606720 1_2:-4515085 None:intergenic
GTAGGACCAAGTCCAAATGT+AGG 0.607962 1_2:+4521597 Msa0050580:three_prime_UTR
GCTCAGACTTGCATCAAAGG+TGG 0.608186 1_2:+4519073 Msa0050580:CDS
GATATTGCCATCTTGACAGG+AGG 0.609386 1_2:+4518067 Msa0050580:CDS
GAAATACAACTCCTTGGCCA+TGG 0.609599 1_2:-4515334 None:intergenic
TGCATGATGCCATGGTTGCA+GGG 0.611540 1_2:-4515188 None:intergenic
GGAAAAGAAATTGAGAGTTG+AGG 0.612753 1_2:+4518908 Msa0050580:CDS
CTTGCAGTTCTCAAATTCAA+CGG 0.614107 1_2:-4517740 None:intergenic
AATGTTAGTTCATTCTGGTG+AGG 0.617715 1_2:-4521939 None:intergenic
ACAAACTGAGACAGAACTCA+AGG 0.620054 1_2:+4518887 Msa0050580:CDS
ACTGTTATCAGAGAGGAGGT+TGG 0.622682 1_2:+4518218 Msa0050580:CDS
GAATGAAGAAATGGCAGCGG+AGG 0.629838 1_2:-4515235 None:intergenic
TGGGAATGAAGAAATGGCAG+CGG 0.632892 1_2:-4515238 None:intergenic
AAGTCCAAATGTAGGACAGA+CGG 0.633215 1_2:+4521605 Msa0050580:three_prime_UTR
GGATAGTGAATTGGCTGATG+TGG 0.636323 1_2:+4517525 Msa0050580:CDS
GATTCGGCATGTAGAAGTGG+CGG 0.643547 1_2:+4521502 Msa0050580:exon
GAGCCCTAAAGTCTCAGCCA+TGG 0.644700 1_2:+4515317 Msa0050580:CDS
TACAATACCCTCCTCAACAG+CGG 0.645508 1_2:-4519030 None:intergenic
AACCCTGTGCTTATCACACG+TGG 0.648183 1_2:+4516302 Msa0050580:CDS
AGGTACTGTTATCAGAGAGG+AGG 0.651028 1_2:+4518214 Msa0050580:CDS
TGCACCTGTTGGTAACCCAA+TGG 0.655339 1_2:+4521119 Msa0050580:CDS
GGGTGTCGTGACACTTGAGG+AGG 0.655940 1_2:+4517621 Msa0050580:CDS
GGAGGAAGAGAGGTTGCATG+AGG 0.656006 1_2:-4515217 None:intergenic
GGAGAGGTTGCATGATGCCA+TGG 0.657034 1_2:-4515196 None:intergenic
GAGGGCATGCAATTTGATCG+AGG 0.658220 1_2:+4517676 Msa0050580:CDS
ATGTGGCAGCAGTTAGTGCA+GGG 0.658714 1_2:+4517542 Msa0050580:CDS
AAAGGGTGTCGTGACACTTG+AGG 0.659317 1_2:+4517618 Msa0050580:CDS
GGTGAGAGCGACGTTGCTGG+TGG 0.659437 1_2:-4515283 None:intergenic
GGTGTCGTGACACTTGAGGA+GGG 0.659758 1_2:+4517622 Msa0050580:CDS
GAATGGTGTGAACAAGCTTG+CGG 0.665076 1_2:+4515476 Msa0050580:intron
GGATCTTATTAACATACTAG+AGG 0.670020 1_2:+4517889 Msa0050580:CDS
TGGTGTCACTGTTGCCAGAG+AGG 0.672652 1_2:+4515581 Msa0050580:CDS
TTGCTCGGAATTGAGAATGG+AGG 0.673266 1_2:-4515105 None:intergenic
TGGGATCATTGATCCAACAA+AGG 0.675402 1_2:+4519564 Msa0050580:CDS
GGTAGGAAATATGATAGCTG+AGG 0.689740 1_2:+4517576 Msa0050580:CDS
GGACGCTCTTAATGCCACAA+AGG 0.695512 1_2:+4518929 Msa0050580:CDS
CGTTGAATTTGAGAACTGCA+AGG 0.697779 1_2:+4517741 Msa0050580:CDS
TACAGGTACTGTTATCAGAG+AGG 0.700067 1_2:+4518211 Msa0050580:CDS
TAGTGCAGGGAACAATCATG+AGG 0.700989 1_2:+4517555 Msa0050580:CDS
TGTTGAGATAAAGGAACCTG+AGG 0.713419 1_2:+4521095 Msa0050580:CDS
TCCCGGAAATAATCTCGGAG+AGG 0.721232 1_2:+4521742 Msa0050580:three_prime_UTR
ACCCTGAGCCAAAACAACAG+AGG 0.733850 1_2:-4516131 None:intergenic
TACCACGTGTGATAAGCACA+GGG 0.740125 1_2:-4516304 None:intergenic
AGGGAATTGAGAGAAAATGG+TGG 0.761398 1_2:-4515169 None:intergenic
GAATGAGGTTCTAGGCACTG+CGG 0.821029 1_2:+4518262 Msa0050580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAAAAAGAAAAAAAAAA+AGG - chr1_2:4516983-4517002 None:intergenic 10.0%
!!! ATAAATATATTTTTGAATAG+GGG - chr1_2:4520061-4520080 None:intergenic 10.0%
!!! GTATAAATATATTTTTGAAT+AGG - chr1_2:4520063-4520082 None:intergenic 10.0%
!!! AAAACTATGATTTTAAATAT+TGG + chr1_2:4521419-4521438 Msa0050580:intron 10.0%
!!! AAACTATGATTTTAAATATT+GGG + chr1_2:4521420-4521439 Msa0050580:intron 10.0%
!! TTAATAAAAGTAAAATATAC+TGG - chr1_2:4521706-4521725 None:intergenic 10.0%
!!! TTTACTTGAATTATTGTTTT+TGG + chr1_2:4515803-4515822 Msa0050580:intron 15.0%
!!! TTTACTTGAATTATTGTTTT+AGG + chr1_2:4515803-4515822 Msa0050580:intron 15.0%
!!! TTTTTAGTGAATTAATAATG+TGG + chr1_2:4515973-4515992 Msa0050580:intron 15.0%
!!! TTTTAGTGAATTAATAATGT+GGG + chr1_2:4515974-4515993 Msa0050580:intron 15.0%
!!! AGAGTGAAATTTTATTTTAT+AGG + chr1_2:4516262-4516281 Msa0050580:intron 15.0%
!!! AAAAAAAAAAAAACTGACTT+TGG - chr1_2:4516882-4516901 None:intergenic 15.0%
!!! TTCTTTTTTATGAATTGAAA+TGG + chr1_2:4516991-4517010 Msa0050580:intron 15.0%
!!! GTTTTTGTAAATAAATAGTT+AGG + chr1_2:4517204-4517223 Msa0050580:intron 15.0%
!!! GTTTTTTTAGATTGATTAAT+TGG + chr1_2:4517226-4517245 Msa0050580:intron 15.0%
!! ACTATTAATGTAAAAAACAT+AGG - chr1_2:4517400-4517419 None:intergenic 15.0%
!!! TTAAAAAATGCGAAATATTT+TGG + chr1_2:4518489-4518508 Msa0050580:intron 15.0%
!! ATAACTTTATAATTAAAACG+TGG + chr1_2:4519289-4519308 Msa0050580:intron 15.0%
!! AAAATATGAAGATTTAATGT+CGG + chr1_2:4519540-4519559 Msa0050580:CDS 15.0%
!! AATTTCCTTAAAAAAAATTG+TGG + chr1_2:4520195-4520214 Msa0050580:intron 15.0%
!! TCCATTATTAATTAATAACA+CGG - chr1_2:4521188-4521207 None:intergenic 15.0%
!!! AATAAACAATGGTATTTTTT+TGG - chr1_2:4521341-4521360 None:intergenic 15.0%
!! TATTGAAAAAGATATACAAA+AGG + chr1_2:4521806-4521825 Msa0050580:intron 15.0%
!!! TTCACTTGAATTATTGTTTT+TGG + chr1_2:4515625-4515644 Msa0050580:intron 20.0%
!!! TTTTTAGTGAATTAGTTATG+TGG + chr1_2:4515701-4515720 Msa0050580:intron 20.0%
!!! TTTTAGTGAATTAGTTATGT+GGG + chr1_2:4515702-4515721 Msa0050580:intron 20.0%
!!! TTCACTTGAATTATTGTTTT+TGG + chr1_2:4515625-4515644 Msa0050580:intron 20.0%
!!! TATTTATTTTGTCTGAGTTT+AGG + chr1_2:4515771-4515790 Msa0050580:intron 20.0%
!!! ATTTATTTTGTCTGAGTTTA+GGG + chr1_2:4515772-4515791 Msa0050580:intron 20.0%
!! TTTAGTGAATTAATAATGTG+GGG + chr1_2:4515975-4515994 Msa0050580:intron 20.0%
!!! TAAAATTTCACTCTAAAATG+AGG - chr1_2:4516256-4516275 None:intergenic 20.0%
!!! ATTTTTATTACACGTGTTAT+GGG + chr1_2:4516418-4516437 Msa0050580:intron 20.0%
!! AAGCAAAGGAAAAAAAAAAT+TGG - chr1_2:4516647-4516666 None:intergenic 20.0%
!!! TTTTTTTCTCAATTAGATGT+AGG + chr1_2:4516791-4516810 Msa0050580:intron 20.0%
!!! TTTTTTCTCAATTAGATGTA+GGG + chr1_2:4516792-4516811 Msa0050580:intron 20.0%
!!! AAAAAATTAGCCTTCAATTA+TGG + chr1_2:4517023-4517042 Msa0050580:intron 20.0%
!!! AAAAATTAGCCTTCAATTAT+GGG + chr1_2:4517024-4517043 Msa0050580:intron 20.0%
!! AGTTTAAATGAAAAAGATGA+GGG - chr1_2:4517471-4517490 None:intergenic 20.0%
!! AAGTTTAAATGAAAAAGATG+AGG - chr1_2:4517472-4517491 None:intergenic 20.0%
!! AAAAAAAGTCTACATTATAC+AGG + chr1_2:4518616-4518635 Msa0050580:intron 20.0%
!! AAAATGTCTACATATTCTAT+AGG + chr1_2:4518666-4518685 Msa0050580:intron 20.0%
!! AAAAATATCTCCATATAAAG+GGG - chr1_2:4519182-4519201 None:intergenic 20.0%
!! GAAAAATATCTCCATATAAA+GGG - chr1_2:4519183-4519202 None:intergenic 20.0%
!!! TTTTTGCTATTAATTTCAGA+GGG - chr1_2:4519355-4519374 None:intergenic 20.0%
!!! TTTTTTGCTATTAATTTCAG+AGG - chr1_2:4519356-4519375 None:intergenic 20.0%
!! AAATTAATAGCAAAAAATGC+TGG + chr1_2:4519359-4519378 Msa0050580:CDS 20.0%
!!! AACTTATGTAACTTGTATAT+TGG + chr1_2:4519467-4519486 Msa0050580:intron 20.0%
!!! TAAATTAAACTTAGCTTGTA+GGG + chr1_2:4519671-4519690 Msa0050580:intron 20.0%
!!! CATTATAAATGGTTTGTATA+TGG + chr1_2:4519701-4519720 Msa0050580:intron 20.0%
!!! CTTGTGTTTTGATTAAATTT+TGG + chr1_2:4519728-4519747 Msa0050580:intron 20.0%
!! TTCCTTAGAAAAATTGTATT+TGG + chr1_2:4519809-4519828 Msa0050580:intron 20.0%
!!! TTTTAAAAACTGACAATAAG+AGG - chr1_2:4520125-4520144 None:intergenic 20.0%
!!! TACATCCACAATTTTTTTTA+AGG - chr1_2:4520203-4520222 None:intergenic 20.0%
!! TATAATATCATCATCACATT+CGG + chr1_2:4520352-4520371 Msa0050580:intron 20.0%
!!! TAAGCAAAAATTCACTTTTT+AGG - chr1_2:4520494-4520513 None:intergenic 20.0%
!! ACTAGAACATAAAATAAATC+AGG - chr1_2:4520825-4520844 None:intergenic 20.0%
!!! ACCGTGTTATTAATTAATAA+TGG + chr1_2:4521184-4521203 Msa0050580:intron 20.0%
!! TAGAAAGTTATTTATACTCA+TGG + chr1_2:4521773-4521792 Msa0050580:three_prime_UTR 20.0%
!! AGAAAGTTATTTATACTCAT+GGG + chr1_2:4521774-4521793 Msa0050580:three_prime_UTR 20.0%
!! ATACACTTATTCTACTTATA+GGG + chr1_2:4521831-4521850 Msa0050580:intron 20.0%
!! GATACAATTGTACTATTTAT+AGG + chr1_2:4521883-4521902 Msa0050580:intron 20.0%
!!! TTTGTGTTTTTGTTACAGAA+TGG + chr1_2:4515459-4515478 Msa0050580:intron 25.0%
! TTTAGTGAATTAGTTATGTG+GGG + chr1_2:4515703-4515722 Msa0050580:intron 25.0%
!!! TTTTTGGTGAATTAGTTATG+TGG + chr1_2:4515819-4515838 Msa0050580:intron 25.0%
!! TTTTGGTGAATTAGTTATGT+GGG + chr1_2:4515820-4515839 Msa0050580:intron 25.0%
!!! TTTTAGGTGAATTAGTTATG+TGG + chr1_2:4515896-4515915 Msa0050580:intron 25.0%
! TGTTTACATTTGCGTTAAAA+AGG + chr1_2:4516015-4516034 Msa0050580:intron 25.0%
! TAAGTAACTAATAATGTGCT+TGG + chr1_2:4516199-4516218 Msa0050580:intron 25.0%
! ACTTAAACTAATGTCAAAAG+AGG + chr1_2:4516358-4516377 Msa0050580:CDS 25.0%
!! CATTTTTATTACACGTGTTA+TGG + chr1_2:4516417-4516436 Msa0050580:intron 25.0%
!! TTTTTCTCAATTAGATGTAG+GGG + chr1_2:4516793-4516812 Msa0050580:intron 25.0%
! CATGAACTAAACCAAATTTA+TGG + chr1_2:4516827-4516846 Msa0050580:intron 25.0%
! ACTAAACCAAATTTATGGTT+CGG + chr1_2:4516832-4516851 Msa0050580:intron 25.0%
!! TTTTATAAACCCGTTCAATT+TGG + chr1_2:4516915-4516934 Msa0050580:intron 25.0%
! TAATTTCAACCCATAATTGA+AGG - chr1_2:4517036-4517055 None:intergenic 25.0%
! CAGATTTGTAAATTATGAAG+TGG + chr1_2:4517064-4517083 Msa0050580:intron 25.0%
!! TTTATTGTTTCTCAAAACTG+GGG - chr1_2:4517147-4517166 None:intergenic 25.0%
!! GTTTATTGTTTCTCAAAACT+GGG - chr1_2:4517148-4517167 None:intergenic 25.0%
! TATACAAGTGCATCTAAATA+GGG - chr1_2:4517293-4517312 None:intergenic 25.0%
! ATATACAAGTGCATCTAAAT+AGG - chr1_2:4517294-4517313 None:intergenic 25.0%
! ATTTAAACTTAGAAGAGTTG+TGG + chr1_2:4517482-4517501 Msa0050580:intron 25.0%
! TGGCAAAGATAATAATAAGT+TGG - chr1_2:4517789-4517808 None:intergenic 25.0%
!! TAAGTAAAAACACAAGTTGA+TGG - chr1_2:4517809-4517828 None:intergenic 25.0%
! TAAACCAAAAAAGGAACAAA+GGG - chr1_2:4518156-4518175 None:intergenic 25.0%
! ACAAATTAAGAACCAAATTG+AGG + chr1_2:4518364-4518383 Msa0050580:CDS 25.0%
! TTACTTATTCTTCATGTACA+AGG - chr1_2:4518461-4518480 None:intergenic 25.0%
!! TTTTTCTTCATCATTTGCAA+GGG - chr1_2:4519114-4519133 None:intergenic 25.0%
! AAAATATCTCCATATAAAGG+GGG - chr1_2:4519181-4519200 None:intergenic 25.0%
! CGAAAAATATCTCCATATAA+AGG - chr1_2:4519184-4519203 None:intergenic 25.0%
!! ATGGAGATATTTTTCGTTTT+AGG + chr1_2:4519188-4519207 Msa0050580:intron 25.0%
! TATAAAGTTATAATCAGCGT+CGG - chr1_2:4519280-4519299 None:intergenic 25.0%
!! TAGTGAGAAGGTATAAAAAT+CGG + chr1_2:4519400-4519419 Msa0050580:intron 25.0%
! GTATAAAAATCGGCTAAATT+TGG + chr1_2:4519410-4519429 Msa0050580:intron 25.0%
!! TATGTAACTTGTATATTGGT+AGG + chr1_2:4519471-4519490 Msa0050580:intron 25.0%
! AATCTATAAATCACCTTTGT+TGG - chr1_2:4519580-4519599 None:intergenic 25.0%
!!! GTAAATTAAACTTAGCTTGT+AGG + chr1_2:4519670-4519689 Msa0050580:intron 25.0%
! ACAAACCATTTATAATGATG+CGG - chr1_2:4519698-4519717 None:intergenic 25.0%
!! CTCCAAATACAATTTTTCTA+AGG - chr1_2:4519814-4519833 None:intergenic 25.0%
! CTTAGAAAAATTGTATTTGG+AGG + chr1_2:4519812-4519831 Msa0050580:intron 25.0%
! GAAATTATGAAGAGAGAAAT+AGG + chr1_2:4519906-4519925 Msa0050580:intron 25.0%
!!! AGTAGATTTGAAGTATTGTT+TGG + chr1_2:4519969-4519988 Msa0050580:intron 25.0%
! CTGTGTAATTCGTATATTAA+TGG - chr1_2:4520280-4520299 None:intergenic 25.0%
! TGTTTGCTTATATTTGTGAT+CGG - chr1_2:4520395-4520414 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr1_2:4520430-4520449 Msa0050580:intron 25.0%
! CATTGAATAAATGATGTATG+TGG - chr1_2:4520469-4520488 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + chr1_2:4520504-4520523 Msa0050580:intron 25.0%
! ATGTATAAGAAATGAAAGCA+AGG + chr1_2:4520576-4520595 Msa0050580:intron 25.0%
! TGTATAAGAAATGAAAGCAA+GGG + chr1_2:4520577-4520596 Msa0050580:intron 25.0%
! AAACAAACAGACTATTAATG+TGG + chr1_2:4520790-4520809 Msa0050580:intron 25.0%
! AACAAACAGACTATTAATGT+GGG + chr1_2:4520791-4520810 Msa0050580:intron 25.0%
!!! TATGTTCTAGTTTCTTGATT+AGG + chr1_2:4520834-4520853 Msa0050580:intron 25.0%
!!! ATGTTCTAGTTTCTTGATTA+GGG + chr1_2:4520835-4520854 Msa0050580:intron 25.0%
! ATTCTATGACGATTCTTAAA+AGG + chr1_2:4520876-4520895 Msa0050580:intron 25.0%
! AGAGTAATAGGAATAAACAA+TGG - chr1_2:4521352-4521371 None:intergenic 25.0%
! CCTTAAAATTCAAGATTCTT+AGG - chr1_2:4521397-4521416 None:intergenic 25.0%
!! CCTAAGAATCTTGAATTTTA+AGG + chr1_2:4521394-4521413 Msa0050580:intron 25.0%
!! ATCTTTTTGTAAAACGTTGT+TGG + chr1_2:4521453-4521472 Msa0050580:intron 25.0%
! TATTACATCGAAAAAATAGG+AGG - chr1_2:4521553-4521572 None:intergenic 25.0%
! GTGTATTACATCGAAAAAAT+AGG - chr1_2:4521556-4521575 None:intergenic 25.0%
! TTTCGATGTAATACACAATT+TGG + chr1_2:4521560-4521579 Msa0050580:three_prime_UTR 25.0%
!!! TTGGTAGCTATTTTATTTGT+AGG + chr1_2:4521579-4521598 Msa0050580:three_prime_UTR 25.0%
! CTTGAGCTAATAATTGAAAA+AGG + chr1_2:4521663-4521682 Msa0050580:three_prime_UTR 25.0%
! GATACACTTATTCTACTTAT+AGG + chr1_2:4521830-4521849 Msa0050580:intron 25.0%
! TTAAGAATGTTAGTTCATTC+TGG - chr1_2:4521947-4521966 None:intergenic 25.0%
! GATAAGTTTTCTTTGTTGCT+CGG - chr1_2:4515123-4515142 None:intergenic 30.0%
TTTGTTGAAATACAACTCCT+TGG - chr1_2:4515343-4515362 None:intergenic 30.0%
GAGTTGTATTTCAACAAAGA+TGG + chr1_2:4515345-4515364 Msa0050580:CDS 30.0%
!!! TTCGTTTTTTGAGCATGATT+GGG - chr1_2:4515403-4515422 None:intergenic 30.0%
!!! TTTCGTTTTTTGAGCATGAT+TGG - chr1_2:4515404-4515423 None:intergenic 30.0%
TCTCCTAAGATTGTTAATGA+TGG + chr1_2:4515561-4515580 Msa0050580:CDS 30.0%
ACACCATCATTAACAATCTT+AGG - chr1_2:4515567-4515586 None:intergenic 30.0%
TTTGGTGAATTAGTTATGTG+GGG + chr1_2:4515821-4515840 Msa0050580:intron 30.0%
TTACATTTGCGTTAAAAAGG+TGG + chr1_2:4516018-4516037 Msa0050580:intron 30.0%
!! TGAGAATATTGGTGCTAAAT+TGG + chr1_2:4516057-4516076 Msa0050580:CDS 30.0%
AACTAATAATGTGCTTGGTT+TGG + chr1_2:4516204-4516223 Msa0050580:intron 30.0%
!! TTTGCTTGTTGTTACATGAT+TGG + chr1_2:4516228-4516247 Msa0050580:intron 30.0%
!! TTGCTTGTTGTTACATGATT+GGG + chr1_2:4516229-4516248 Msa0050580:intron 30.0%
TGAAGAAATGATAATCAGTG+AGG + chr1_2:4516717-4516736 Msa0050580:intron 30.0%
GAAGAAATGATAATCAGTGA+GGG + chr1_2:4516718-4516737 Msa0050580:intron 30.0%
AAGAAATGATAATCAGTGAG+GGG + chr1_2:4516719-4516738 Msa0050580:intron 30.0%
! GATTTTGAACCAAATTGAAC+GGG - chr1_2:4516927-4516946 None:intergenic 30.0%
! CGATTTTGAACCAAATTGAA+CGG - chr1_2:4516928-4516947 None:intergenic 30.0%
! CGTTCAATTTGGTTCAAAAT+CGG + chr1_2:4516926-4516945 Msa0050580:intron 30.0%
AATCATATGAATAGCAGAAG+AGG + chr1_2:4517097-4517116 Msa0050580:intron 30.0%
ATCATATGAATAGCAGAAGA+GGG + chr1_2:4517098-4517117 Msa0050580:intron 30.0%
! GGTTTATTGTTTCTCAAAAC+TGG - chr1_2:4517149-4517168 None:intergenic 30.0%
AAGTTATAGTTCATGTGAAC+CGG + chr1_2:4517254-4517273 Msa0050580:intron 30.0%
ATACAAGTGCATCTAAATAG+GGG - chr1_2:4517292-4517311 None:intergenic 30.0%
AAACAATCTGTATGTTGTTG+AGG + chr1_2:4517657-4517676 Msa0050580:CDS 30.0%
AACAATCTGTATGTTGTTGA+GGG + chr1_2:4517658-4517677 Msa0050580:CDS 30.0%
ACAAAAAGATATCCAATGCA+AGG + chr1_2:4517867-4517886 Msa0050580:CDS 30.0%
CAAAAAGATATCCAATGCAA+GGG + chr1_2:4517868-4517887 Msa0050580:CDS 30.0%
GGATCTTATTAACATACTAG+AGG + chr1_2:4517889-4517908 Msa0050580:CDS 30.0%
CCTCTGCAATTATCAAAATA+GGG - chr1_2:4517934-4517953 None:intergenic 30.0%
TCCTCTGCAATTATCAAAAT+AGG - chr1_2:4517935-4517954 None:intergenic 30.0%
CTAAACCAAAAAAGGAACAA+AGG - chr1_2:4518157-4518176 None:intergenic 30.0%
AACTATTGTGGTTGTATCTT+TGG - chr1_2:4518303-4518322 None:intergenic 30.0%
AAAGATACAACCACAATAGT+TGG + chr1_2:4518302-4518321 Msa0050580:CDS 30.0%
TGCCATGCAAACAATATTTA+GGG - chr1_2:4518422-4518441 None:intergenic 30.0%
ATGCCATGCAAACAATATTT+AGG - chr1_2:4518423-4518442 None:intergenic 30.0%
TGCAGAACAAGATTATGAAA+AGG + chr1_2:4518690-4518709 Msa0050580:intron 30.0%
!! TTGTGTTTTGTTACGAGTAT+AGG + chr1_2:4518857-4518876 Msa0050580:intron 30.0%
AAACTATGAGCTTATAGAAC+TGG - chr1_2:4518997-4519016 None:intergenic 30.0%
CTCATAGTTTCTTTACTTTC+AGG + chr1_2:4519007-4519026 Msa0050580:intron 30.0%
! CTTTTTCTTCATCATTTGCA+AGG - chr1_2:4519115-4519134 None:intergenic 30.0%
!!! GTTTTTTTTCCCCCTTTATA+TGG + chr1_2:4519169-4519188 Msa0050580:intron 30.0%
ACAAGTCAATAACACTTTCA+AGG - chr1_2:4519215-4519234 None:intergenic 30.0%
CAAACCATTTATAATGATGC+GGG - chr1_2:4519697-4519716 None:intergenic 30.0%
CATGATTTAAGAACCTCATT+TGG - chr1_2:4519761-4519780 None:intergenic 30.0%
AATTGTATTTGGAGGATGTT+AGG + chr1_2:4519820-4519839 Msa0050580:intron 30.0%
AAGAGAAGAAGAAGAGAAAT+AGG + chr1_2:4519995-4520014 Msa0050580:intron 30.0%
AATGCTCAATTTCTTCAGTT+TGG - chr1_2:4520724-4520743 None:intergenic 30.0%
AGTTTCTTGATTAGGGAAAT+TGG + chr1_2:4520842-4520861 Msa0050580:intron 30.0%
GTTTCTTGATTAGGGAAATT+GGG + chr1_2:4520843-4520862 Msa0050580:intron 30.0%
TTTCTTGATTAGGGAAATTG+GGG + chr1_2:4520844-4520863 Msa0050580:intron 30.0%
! TATAGGGAATCGTTTTGTAA+AGG + chr1_2:4521847-4521866 Msa0050580:intron 30.0%
TATTTATAGGAGCTCATTGT+CGG + chr1_2:4521896-4521915 Msa0050580:intron 30.0%
AGGATGAAACTATTAGGTAG+GGG - chr1_2:4515088-4515107 None:intergenic 35.0%
GAGGATGAAACTATTAGGTA+GGG - chr1_2:4515089-4515108 None:intergenic 35.0%
GAATGGAGGATGAAACTATT+AGG - chr1_2:4515094-4515113 None:intergenic 35.0%
!! GGTTTAAGAGGATTTGGTTT+TGG - chr1_2:4515145-4515164 None:intergenic 35.0%
AGAAGATGGGAATGAAGAAA+TGG - chr1_2:4515247-4515266 None:intergenic 35.0%
TGTTTAATTCGTCCGAGTTT+AGG + chr1_2:4515653-4515672 Msa0050580:intron 35.0%
GTTTAATTCGTCCGAGTTTA+GGG + chr1_2:4515654-4515673 Msa0050580:intron 35.0%
AAAATCCTTGACCCTAAACT+CGG - chr1_2:4515668-4515687 None:intergenic 35.0%
! ATTAGTTATGTGGGGTGTTT+AGG + chr1_2:4515711-4515730 Msa0050580:intron 35.0%
! TTAGTTATGTGGGGTGTTTA+GGG + chr1_2:4515712-4515731 Msa0050580:intron 35.0%
!!! TGGAGTGTTTGTTTTGATGT+TGG + chr1_2:4515916-4515935 Msa0050580:intron 35.0%
!!! GGAGTGTTTGTTTTGATGTT+GGG + chr1_2:4515917-4515936 Msa0050580:intron 35.0%
!!! TGTTTTGATGTTGGGTGTTT+AGG + chr1_2:4515925-4515944 Msa0050580:intron 35.0%
!! GTTTTGATGTTGGGTGTTTA+GGG + chr1_2:4515926-4515945 Msa0050580:intron 35.0%
TTAGCACCAATATTCTCAAC+TGG - chr1_2:4516055-4516074 None:intergenic 35.0%
!! AACTACTACCTCTGTTGTTT+TGG + chr1_2:4516123-4516142 Msa0050580:CDS 35.0%
!! TCTTATTGCAGAAGGTGTTA+AGG + chr1_2:4516153-4516172 Msa0050580:CDS 35.0%
!!! GGTAGACTTGTTATGAGTTT+TGG + chr1_2:4516174-4516193 Msa0050580:intron 35.0%
!! TGCTTGTTGTTACATGATTG+GGG + chr1_2:4516230-4516249 Msa0050580:intron 35.0%
! ATTTTATAGGTTGTTGCAGC+TGG + chr1_2:4516275-4516294 Msa0050580:intron 35.0%
!!! TCCCACTTTTTTGCTTATTC+TGG + chr1_2:4516452-4516471 Msa0050580:intron 35.0%
GCCAGAATAAGCAAAAAAGT+GGG - chr1_2:4516456-4516475 None:intergenic 35.0%
GTTAAGCAATGTAATCCCAA+AGG - chr1_2:4516527-4516546 None:intergenic 35.0%
TATGAAACACGAACACCTTT+GGG + chr1_2:4516557-4516576 Msa0050580:intron 35.0%
ACTGAACCGAACCATAAATT+TGG - chr1_2:4516841-4516860 None:intergenic 35.0%
TTGGTTCAAAATCGGTGAAT+TGG + chr1_2:4516934-4516953 Msa0050580:intron 35.0%
TCATATGAATAGCAGAAGAG+GGG + chr1_2:4517099-4517118 Msa0050580:intron 35.0%
!! TTGAGTAAGGTTGGTAGAAA+GGG + chr1_2:4517601-4517620 Msa0050580:CDS 35.0%
TCACTGTCTGTAACAAAGTA+CGG - chr1_2:4517712-4517731 None:intergenic 35.0%
CTTGCAGTTCTCAAATTCAA+CGG - chr1_2:4517743-4517762 None:intergenic 35.0%
GTTAATAAGATCCCTTGCAT+TGG - chr1_2:4517882-4517901 None:intergenic 35.0%
!!! CCCTATTTTGATAATTGCAG+AGG + chr1_2:4517931-4517950 Msa0050580:CDS 35.0%
GGATATTGAACAAGAAGCTT+TGG + chr1_2:4517952-4517971 Msa0050580:CDS 35.0%
! CTTGTTGTGAACAAACTTAG+AGG + chr1_2:4517980-4517999 Msa0050580:CDS 35.0%
TCAAGATGGCAATATCATCA+AGG - chr1_2:4518063-4518082 None:intergenic 35.0%
TTATAAACCTCCTGTCAAGA+TGG - chr1_2:4518077-4518096 None:intergenic 35.0%
!!! TTCTCCCTTTGTTCCTTTTT+TGG + chr1_2:4518149-4518168 Msa0050580:intron 35.0%
!!! TCCTTTTTTGGTTTAGCTGT+TGG + chr1_2:4518161-4518180 Msa0050580:intron 35.0%
ACCAACAGCTAAACCAAAAA+AGG - chr1_2:4518165-4518184 None:intergenic 35.0%
TATCTTCCTAATTCGCTTAC+AGG + chr1_2:4518194-4518213 Msa0050580:CDS 35.0%
!! CTTAATTTGTGAAACTCGCT+TGG - chr1_2:4518354-4518373 None:intergenic 35.0%
TGCAAACAATATTTAGGGAG+TGG - chr1_2:4518417-4518436 None:intergenic 35.0%
CTCCCTAAATATTGTTTGCA+TGG + chr1_2:4518417-4518436 Msa0050580:intron 35.0%
!! GTTTTGTTACGAGTATAGGT+TGG + chr1_2:4518861-4518880 Msa0050580:intron 35.0%
GGAAAAGAAATTGAGAGTTG+AGG + chr1_2:4518908-4518927 Msa0050580:CDS 35.0%
GAAAGATTAAGTCACCTTTG+TGG - chr1_2:4518946-4518965 None:intergenic 35.0%
GAGCTTATAGAACTGGTAAA+AGG - chr1_2:4518990-4519009 None:intergenic 35.0%
TTATAATTAAAACGTGGCGC+AGG + chr1_2:4519295-4519314 Msa0050580:intron 35.0%
GCAAAAAATGCTGGTGTAAA+TGG + chr1_2:4519368-4519387 Msa0050580:CDS 35.0%
TATGAAGATTTAATGTCGGC+TGG + chr1_2:4519544-4519563 Msa0050580:CDS 35.0%
! ATGAAGATTTAATGTCGGCT+GGG + chr1_2:4519545-4519564 Msa0050580:CDS 35.0%
AGACATGCTACTAAAGATAG+CGG - chr1_2:4519649-4519668 None:intergenic 35.0%
!!! TTTTGGTTTCACACCAAATG+AGG + chr1_2:4519745-4519764 Msa0050580:intron 35.0%
TGCTTATATTTGTGATCGGA+GGG - chr1_2:4520391-4520410 None:intergenic 35.0%
TTGCTTATATTTGTGATCGG+AGG - chr1_2:4520392-4520411 None:intergenic 35.0%
ACGATTCTTAAAAGGCTTCT+TGG + chr1_2:4520884-4520903 Msa0050580:intron 35.0%
! TAAGAATGTTTTCGCAACAG+AGG - chr1_2:4521058-4521077 None:intergenic 35.0%
! CTGTGTTGTTGTTGAGATAA+AGG + chr1_2:4521086-4521105 Msa0050580:CDS 35.0%
ACATACCTGAATTGTCCATT+GGG - chr1_2:4521137-4521156 None:intergenic 35.0%
TACATACCTGAATTGTCCAT+TGG - chr1_2:4521138-4521157 None:intergenic 35.0%
CAATTCAGGTATGTAGTTTG+CGG + chr1_2:4521143-4521162 Msa0050580:intron 35.0%
ACAGTTACACACAGAGTAAT+AGG - chr1_2:4521364-4521383 None:intergenic 35.0%
! CTTTCTTTTCTCCTAGGATT+CGG + chr1_2:4521486-4521505 Msa0050580:intron 35.0%
TCGAAAAAATAGGAGGACAA+TGG - chr1_2:4521546-4521565 None:intergenic 35.0%
AATGTTAGTTCATTCTGGTG+AGG - chr1_2:4521942-4521961 None:intergenic 35.0%
GGAGGATGAAACTATTAGGT+AGG - chr1_2:4515090-4515109 None:intergenic 40.0%
TTGTTGCTCGGAATTGAGAA+TGG - chr1_2:4515111-4515130 None:intergenic 40.0%
TTGAGAGAAAATGGTGGCTA+GGG - chr1_2:4515166-4515185 None:intergenic 40.0%
ATTGAGAGAAAATGGTGGCT+AGG - chr1_2:4515167-4515186 None:intergenic 40.0%
AGGGAATTGAGAGAAAATGG+TGG - chr1_2:4515172-4515191 None:intergenic 40.0%
TGCAGGGAATTGAGAGAAAA+TGG - chr1_2:4515175-4515194 None:intergenic 40.0%
!! GATTTGGTTGGTGTTACTCT+TGG + chr1_2:4515498-4515517 Msa0050580:CDS 40.0%
AGAACAACATTCCTTCCCTT+AGG - chr1_2:4515525-4515544 None:intergenic 40.0%
GTTGTTCTTGAGAGCAAGTA+TGG + chr1_2:4515537-4515556 Msa0050580:CDS 40.0%
TTGCGTTAAAAAGGTGGAGT+TGG + chr1_2:4516024-4516043 Msa0050580:intron 40.0%
GAGGATCCAGTTGAGAATAT+TGG + chr1_2:4516046-4516065 Msa0050580:CDS 40.0%
! TGGTGCTAAATTGGTTAGAC+AGG + chr1_2:4516066-4516085 Msa0050580:CDS 40.0%
TGCCAAATCATTTGTCTTGG+CGG - chr1_2:4516095-4516114 None:intergenic 40.0%
GCAAAAAAGTGGGAAGTTTG+AGG - chr1_2:4516446-4516465 None:intergenic 40.0%
CGCCAGAATAAGCAAAAAAG+TGG - chr1_2:4516457-4516476 None:intergenic 40.0%
ATTCGTGCATCGTAGGTATT+AGG - chr1_2:4516503-4516522 None:intergenic 40.0%
!! CAAAGGTGTTCGTGTTTCAT+AGG - chr1_2:4516558-4516577 None:intergenic 40.0%
CTATGAAACACGAACACCTT+TGG + chr1_2:4516556-4516575 Msa0050580:intron 40.0%
CACTCTTTGGACGTATCTAT+GGG + chr1_2:4516681-4516700 Msa0050580:intron 40.0%
ACTCTTTGGACGTATCTATG+GGG + chr1_2:4516682-4516701 Msa0050580:intron 40.0%
! ATTAGATGTAGGGGTGTGAA+TGG + chr1_2:4516802-4516821 Msa0050580:intron 40.0%
! ATAGGGGTGTGCATAAAAAC+CGG - chr1_2:4517276-4517295 None:intergenic 40.0%
AAGCACAAACACCTAACATG+AGG - chr1_2:4517436-4517455 None:intergenic 40.0%
GGTAGGAAATATGATAGCTG+AGG + chr1_2:4517576-4517595 Msa0050580:CDS 40.0%
!! GTTGAGTAAGGTTGGTAGAA+AGG + chr1_2:4517600-4517619 Msa0050580:CDS 40.0%
CGTTGAATTTGAGAACTGCA+AGG + chr1_2:4517741-4517760 Msa0050580:CDS 40.0%
CTAGAGGACGCAATTAGAAA+CGG + chr1_2:4517905-4517924 Msa0050580:CDS 40.0%
ACTGAAGATTGCAGCACTTA+AGG + chr1_2:4518006-4518025 Msa0050580:CDS 40.0%
TGGCAATATCATCAAGGTAC+TGG - chr1_2:4518057-4518076 None:intergenic 40.0%
GATGATATTGCCATCTTGAC+AGG + chr1_2:4518064-4518083 Msa0050580:CDS 40.0%
ACAGTACCTGTAAGCGAATT+AGG - chr1_2:4518203-4518222 None:intergenic 40.0%
! TACAGGTACTGTTATCAGAG+AGG + chr1_2:4518211-4518230 Msa0050580:CDS 40.0%
GACTTAGCTTAGACAAAGCT+GGG + chr1_2:4518240-4518259 Msa0050580:CDS 40.0%
!! ACAACCACAATAGTTGGTGA+TGG + chr1_2:4518308-4518327 Msa0050580:CDS 40.0%
ACTTCCATCACCAACTATTG+TGG - chr1_2:4518315-4518334 None:intergenic 40.0%
ACAATATTTAGGGAGTGGAG+AGG - chr1_2:4518412-4518431 None:intergenic 40.0%
!!! TGCGAAATATTTTGGCCTGA+TGG + chr1_2:4518497-4518516 Msa0050580:intron 40.0%
!!! ATATTTTGGCCTGATGGTGT+TGG + chr1_2:4518503-4518522 Msa0050580:intron 40.0%
CTAAATTAGCCCACCCAAAT+TGG - chr1_2:4518585-4518604 None:intergenic 40.0%
AAAAGGAGAAGCTGAACGAA+AGG + chr1_2:4518707-4518726 Msa0050580:intron 40.0%
GAAAGGATTGCAAAACTGTC+TGG + chr1_2:4518724-4518743 Msa0050580:intron 40.0%
TTCAACGAGTTCACTGAGAT+GGG - chr1_2:4518780-4518799 None:intergenic 40.0%
TTTCAACGAGTTCACTGAGA+TGG - chr1_2:4518781-4518800 None:intergenic 40.0%
ACAAACTGAGACAGAACTCA+AGG + chr1_2:4518887-4518906 Msa0050580:CDS 40.0%
TTTGCTCAGACTTGCATCAA+AGG + chr1_2:4519070-4519089 Msa0050580:CDS 40.0%
ATCAAAGGTGGATGCAATCA+AGG + chr1_2:4519085-4519104 Msa0050580:CDS 40.0%
TCCAACGACAATACGAGATA+CGG + chr1_2:4519499-4519518 Msa0050580:CDS 40.0%
TACGGATATAATGCTGCAAC+TGG + chr1_2:4519517-4519536 Msa0050580:CDS 40.0%
TGGGATCATTGATCCAACAA+AGG + chr1_2:4519564-4519583 Msa0050580:CDS 40.0%
!! CAGATTTGTTGAAGTGTCAC+TGG + chr1_2:4519855-4519874 Msa0050580:intron 40.0%
!! GAAGTGTCACTGGACTTTTA+CGG + chr1_2:4519865-4519884 Msa0050580:intron 40.0%
ATTAATGGCGAGCAATTTCG+AGG - chr1_2:4520265-4520284 None:intergenic 40.0%
!! TCATCACATTCGGTTTGTTG+TGG + chr1_2:4520362-4520381 Msa0050580:intron 40.0%
!! CATCACATTCGGTTTGTTGT+GGG + chr1_2:4520363-4520382 Msa0050580:intron 40.0%
TTGCTTATATTTGTGACCGG+AGG + chr1_2:4520507-4520526 Msa0050580:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG + chr1_2:4520508-4520527 Msa0050580:intron 40.0%
AGAGAAGGGGTAACATATAC+AGG - chr1_2:4520617-4520636 None:intergenic 40.0%
AGCGAAGAAAATGGAGAGAA+GGG - chr1_2:4520631-4520650 None:intergenic 40.0%
GTCCAGCAGAGAAATCAAAA+AGG + chr1_2:4520651-4520670 Msa0050580:intron 40.0%
!!! CACCTTTTTGATTTCTCTGC+TGG - chr1_2:4520656-4520675 None:intergenic 40.0%
! CAATTTCTTCAGTTTGGTGG+AGG - chr1_2:4520718-4520737 None:intergenic 40.0%
GCTCAATTTCTTCAGTTTGG+TGG - chr1_2:4520721-4520740 None:intergenic 40.0%
GAGTTAGCAAAGAGAGAGAT+AGG - chr1_2:4520752-4520771 None:intergenic 40.0%
AGTGTAGTGTCACACATAGA+AGG - chr1_2:4520936-4520955 None:intergenic 40.0%
TGTTGAGATAAAGGAACCTG+AGG + chr1_2:4521095-4521114 Msa0050580:CDS 40.0%
CGAATCCTAGGAGAAAAGAA+AGG - chr1_2:4521488-4521507 None:intergenic 40.0%
AAGTCCAAATGTAGGACAGA+CGG + chr1_2:4521605-4521624 Msa0050580:three_prime_UTR 40.0%
! AACTGTTTTGTACGTGTTCC+CGG + chr1_2:4521725-4521744 Msa0050580:three_prime_UTR 40.0%
AACCTCTCCGAGATTATTTC+CGG - chr1_2:4521747-4521766 None:intergenic 40.0%
TTGCTCGGAATTGAGAATGG+AGG - chr1_2:4515108-4515127 None:intergenic 45.0%
GGCTAGGGTTTAAGAGGATT+TGG - chr1_2:4515151-4515170 None:intergenic 45.0%
AATGGTGGCTAGGGTTTAAG+AGG - chr1_2:4515157-4515176 None:intergenic 45.0%
TGGGAATGAAGAAATGGCAG+CGG - chr1_2:4515241-4515260 None:intergenic 45.0%
GAAATACAACTCCTTGGCCA+TGG - chr1_2:4515337-4515356 None:intergenic 45.0%
TTCCGCTATCAAGAAACTCC+AGG + chr1_2:4515368-4515387 Msa0050580:CDS 45.0%
CACCTGGAGTTTCTTGATAG+CGG - chr1_2:4515373-4515392 None:intergenic 45.0%
GCTATCAAGAAACTCCAGGT+GGG + chr1_2:4515372-4515391 Msa0050580:intron 45.0%
GAATGGTGTGAACAAGCTTG+CGG + chr1_2:4515476-4515495 Msa0050580:intron 45.0%
TGTGAACAAGCTTGCGGATT+TGG + chr1_2:4515482-4515501 Msa0050580:CDS 45.0%
! AACAAGCTTGCGGATTTGGT+TGG + chr1_2:4515486-4515505 Msa0050580:CDS 45.0%
!! TGGTGTTACTCTTGGTCCTA+AGG + chr1_2:4515506-4515525 Msa0050580:CDS 45.0%
!! GGTGTTACTCTTGGTCCTAA+GGG + chr1_2:4515507-4515526 Msa0050580:CDS 45.0%
TTACTCTTGGTCCTAAGGGA+AGG + chr1_2:4515511-4515530 Msa0050580:CDS 45.0%
ACTCTAAACACACACCTCTC+TGG - chr1_2:4515598-4515617 None:intergenic 45.0%
CGTTAAAAAGGTGGAGTTGG+AGG + chr1_2:4516027-4516046 Msa0050580:intron 45.0%
AGCCGCCAAGACAAATGATT+TGG + chr1_2:4516090-4516109 Msa0050580:CDS 45.0%
! GCCAAGACAAATGATTTGGC+AGG + chr1_2:4516094-4516113 Msa0050580:CDS 45.0%
GCCTGCCAAATCATTTGTCT+TGG - chr1_2:4516098-4516117 None:intergenic 45.0%
! ACAAATGATTTGGCAGGCGA+TGG + chr1_2:4516100-4516119 Msa0050580:CDS 45.0%
!!! TACCTCTGTTGTTTTGGCTC+AGG + chr1_2:4516129-4516148 Msa0050580:CDS 45.0%
!!! ACCTCTGTTGTTTTGGCTCA+GGG + chr1_2:4516130-4516149 Msa0050580:CDS 45.0%
TACCACGTGTGATAAGCACA+GGG - chr1_2:4516307-4516326 None:intergenic 45.0%
ATACCACGTGTGATAAGCAC+AGG - chr1_2:4516308-4516327 None:intergenic 45.0%
TACGATGCACGAATGCCTTT+GGG + chr1_2:4516509-4516528 Msa0050580:intron 45.0%
!! ACACGAACACCTTTGGGATT+AGG + chr1_2:4516563-4516582 Msa0050580:intron 45.0%
CCTAAGGTGTGTTGAAGCAA+AGG - chr1_2:4516661-4516680 None:intergenic 45.0%
CCTTTGCTTCAACACACCTT+AGG + chr1_2:4516658-4516677 Msa0050580:intron 45.0%
AACACACCTTAGGCACTCTT+TGG + chr1_2:4516668-4516687 Msa0050580:intron 45.0%
!! ATACGTCCAAAGAGTGCCTA+AGG - chr1_2:4516677-4516696 None:intergenic 45.0%
GCACTCTTTGGACGTATCTA+TGG + chr1_2:4516680-4516699 Msa0050580:intron 45.0%
CAGAAGAGGGGTTGTGAAAT+GGG + chr1_2:4517111-4517130 Msa0050580:intron 45.0%
TATAACACACCCACACACAC+AGG + chr1_2:4517365-4517384 Msa0050580:intron 45.0%
ACATTGACACCTGTGTGTGT+GGG - chr1_2:4517377-4517396 None:intergenic 45.0%
CAACATGTCTGCCTCATGTT+AGG + chr1_2:4517422-4517441 Msa0050580:intron 45.0%
GTTGTGGTTGTGTGAATTGC+AGG + chr1_2:4517498-4517517 Msa0050580:intron 45.0%
GTTGTGTGAATTGCAGGTTG+AGG + chr1_2:4517504-4517523 Msa0050580:intron 45.0%
! GCAGGTTGAGGATAGTGAAT+TGG + chr1_2:4517516-4517535 Msa0050580:intron 45.0%
GGATAGTGAATTGGCTGATG+TGG + chr1_2:4517525-4517544 Msa0050580:CDS 45.0%
TAGTGCAGGGAACAATCATG+AGG + chr1_2:4517555-4517574 Msa0050580:CDS 45.0%
GATATTGCCATCTTGACAGG+AGG + chr1_2:4518067-4518086 Msa0050580:CDS 45.0%
! AGGTACTGTTATCAGAGAGG+AGG + chr1_2:4518214-4518233 Msa0050580:CDS 45.0%
ACTGTTATCAGAGAGGAGGT+TGG + chr1_2:4518218-4518237 Msa0050580:CDS 45.0%
GGACTTAGCTTAGACAAAGC+TGG + chr1_2:4518239-4518258 Msa0050580:CDS 45.0%
CTTAGACAAAGCTGGGAATG+AGG + chr1_2:4518247-4518266 Msa0050580:CDS 45.0%
AAAGCTGGGAATGAGGTTCT+AGG + chr1_2:4518254-4518273 Msa0050580:CDS 45.0%
! TCGCTTGGTAACTGCTTCTT+GGG - chr1_2:4518339-4518358 None:intergenic 45.0%
ATATTTAGGGAGTGGAGAGG+CGG - chr1_2:4518409-4518428 None:intergenic 45.0%
GAATCAAACCTGAGACCTTG+AGG - chr1_2:4518553-4518572 None:intergenic 45.0%
AGGATTGCAAAACTGTCTGG+CGG + chr1_2:4518727-4518746 Msa0050580:intron 45.0%
TACAATACCCTCCTCAACAG+CGG - chr1_2:4519033-4519052 None:intergenic 45.0%
!! GTTGAGGAGGGTATTGTAGT+TGG + chr1_2:4519035-4519054 Msa0050580:CDS 45.0%
AATTAAAACGTGGCGCAGGT+TGG + chr1_2:4519299-4519318 Msa0050580:intron 45.0%
! TGGCAGTGTTGTTAGTGAGA+AGG + chr1_2:4519388-4519407 Msa0050580:CDS 45.0%
TCCGTATCTCGTATTGTCGT+TGG - chr1_2:4519503-4519522 None:intergenic 45.0%
AGGGCCCGCATCATTATAAA+TGG + chr1_2:4519690-4519709 Msa0050580:intron 45.0%
! CTGGACTTTTACGGTGTGTT+TGG + chr1_2:4519874-4519893 Msa0050580:intron 45.0%
GCGAAGAAAATGGAGAGAAG+GGG - chr1_2:4520630-4520649 None:intergenic 45.0%
CAGCGAAGAAAATGGAGAGA+AGG - chr1_2:4520632-4520651 None:intergenic 45.0%
CATAGAAGGCAGAAACATGC+AGG - chr1_2:4520922-4520941 None:intergenic 45.0%
TTGTCCATTGGGTTACCAAC+AGG - chr1_2:4521126-4521145 None:intergenic 45.0%
GGTAACCCAATGGACAATTC+AGG + chr1_2:4521129-4521148 Msa0050580:CDS 45.0%
! CTCTGCCTTTCTTTTCTCCT+AGG + chr1_2:4521480-4521499 Msa0050580:intron 45.0%
ACTTCTACATGCCGAATCCT+AGG - chr1_2:4521500-4521519 None:intergenic 45.0%
TAGGATTCGGCATGTAGAAG+TGG + chr1_2:4521499-4521518 Msa0050580:intron 45.0%
AAGTGGCGGCTGCTTAAAAT+GGG + chr1_2:4521516-4521535 Msa0050580:three_prime_UTR 45.0%
GTAGGACCAAGTCCAAATGT+AGG + chr1_2:4521597-4521616 Msa0050580:three_prime_UTR 45.0%
GTCTGTCCTACATTTGGACT+TGG - chr1_2:4521606-4521625 None:intergenic 45.0%
CGTGTTCCCGGAAATAATCT+CGG + chr1_2:4521737-4521756 Msa0050580:three_prime_UTR 45.0%
ACCTCTCCGAGATTATTTCC+GGG - chr1_2:4521746-4521765 None:intergenic 45.0%
!!! TTAAAATTTTAAAAACAATT+TGG - chr1_2:4517170-4517189 None:intergenic 5.0%
!!! TTGTTTTTAAAATTTTAAAT+TGG + chr1_2:4517172-4517191 Msa0050580:intron 5.0%
!!! TATAAATATATTTTTGAATA+GGG - chr1_2:4520062-4520081 None:intergenic 5.0%
CTCTCAATTCCCTGCAACCA+TGG + chr1_2:4515179-4515198 Msa0050580:exon 50.0%
TGCATGATGCCATGGTTGCA+GGG - chr1_2:4515191-4515210 None:intergenic 50.0%
TTGCATGATGCCATGGTTGC+AGG - chr1_2:4515192-4515211 None:intergenic 50.0%
AAGAGAGGTTGCATGAGGAG+AGG - chr1_2:4515215-4515234 None:intergenic 50.0%
GAATGAAGAAATGGCAGCGG+AGG - chr1_2:4515238-4515257 None:intergenic 50.0%
! GTTGCTGGTGGTTTTTCTGC+GGG - chr1_2:4515274-4515293 None:intergenic 50.0%
! CGTTGCTGGTGGTTTTTCTG+CGG - chr1_2:4515275-4515294 None:intergenic 50.0%
TCGCTCTCACCAGGAAGAAT+CGG + chr1_2:4515295-4515314 Msa0050580:CDS 50.0%
! TTTAGGGCTCCGATTCTTCC+TGG - chr1_2:4515307-4515326 None:intergenic 50.0%
TGGCCATGGCTGAGACTTTA+GGG - chr1_2:4515323-4515342 None:intergenic 50.0%
TTGGCCATGGCTGAGACTTT+AGG - chr1_2:4515324-4515343 None:intergenic 50.0%
TAAAGTCTCAGCCATGGCCA+AGG + chr1_2:4515323-4515342 Msa0050580:CDS 50.0%
CGCTATCAAGAAACTCCAGG+TGG + chr1_2:4515371-4515390 Msa0050580:intron 50.0%
ATGATTGGGAAGAACCCACC+TGG - chr1_2:4515389-4515408 None:intergenic 50.0%
! TTCGTCCGAGTTTAGGGTCA+AGG + chr1_2:4515660-4515679 Msa0050580:intron 50.0%
! GTGGGGTGTTTGCTTTGATG+CGG + chr1_2:4515838-4515857 Msa0050580:intron 50.0%
ACCCTGAGCCAAAACAACAG+AGG - chr1_2:4516134-4516153 None:intergenic 50.0%
!! GCTCAGGGTCTTATTGCAGA+AGG + chr1_2:4516145-4516164 Msa0050580:CDS 50.0%
AACCCTGTGCTTATCACACG+TGG + chr1_2:4516302-4516321 Msa0050580:CDS 50.0%
!! CAAAGGCATTCGTGCATCGT+AGG - chr1_2:4516510-4516529 None:intergenic 50.0%
CTACGATGCACGAATGCCTT+TGG + chr1_2:4516508-4516527 Msa0050580:intron 50.0%
GCACGTAAGCCTAATCCCAA+AGG - chr1_2:4516575-4516594 None:intergenic 50.0%
GCAGAAGAGGGGTTGTGAAA+TGG + chr1_2:4517110-4517129 Msa0050580:intron 50.0%
GACATTGACACCTGTGTGTG+TGG - chr1_2:4517378-4517397 None:intergenic 50.0%
ATGTGGCAGCAGTTAGTGCA+GGG + chr1_2:4517542-4517561 Msa0050580:CDS 50.0%
GCAGGGAACAATCATGAGGT+AGG + chr1_2:4517559-4517578 Msa0050580:CDS 50.0%
!! GATAGCTGAGGCGTTGAGTA+AGG + chr1_2:4517588-4517607 Msa0050580:CDS 50.0%
!! AAAGGGTGTCGTGACACTTG+AGG + chr1_2:4517618-4517637 Msa0050580:CDS 50.0%
! GAGGGCATGCAATTTGATCG+AGG + chr1_2:4517676-4517695 Msa0050580:CDS 50.0%
ATTGCAGCACTTAAGGCTCC+TGG + chr1_2:4518013-4518032 Msa0050580:CDS 50.0%
GCACTTAAGGCTCCTGGATT+TGG + chr1_2:4518019-4518038 Msa0050580:CDS 50.0%
CTCTTGCGTTCTCCAAATCC+AGG - chr1_2:4518034-4518053 None:intergenic 50.0%
!! GAATGAGGTTCTAGGCACTG+CGG + chr1_2:4518262-4518281 Msa0050580:CDS 50.0%
ATCTTTGGTGAGCACCACCT+TGG - chr1_2:4518288-4518307 None:intergenic 50.0%
! CTCGCTTGGTAACTGCTTCT+TGG - chr1_2:4518340-4518359 None:intergenic 50.0%
GAGAGGGGGAAACCTCAATT+TGG - chr1_2:4518379-4518398 None:intergenic 50.0%
TATTTAGGGAGTGGAGAGGC+GGG - chr1_2:4518408-4518427 None:intergenic 50.0%
TCAAACCTGAGACCTTGAGG+AGG - chr1_2:4518550-4518569 None:intergenic 50.0%
GTCTCAGGTTTGATTCTCCG+CGG + chr1_2:4518557-4518576 Msa0050580:intron 50.0%
! ATTCTCCGCGGTGCCAATTT+GGG + chr1_2:4518569-4518588 Msa0050580:intron 50.0%
GGACGCTCTTAATGCCACAA+AGG + chr1_2:4518929-4518948 Msa0050580:CDS 50.0%
TTACTTTCAGGCCGCTGTTG+AGG + chr1_2:4519019-4519038 Msa0050580:intron 50.0%
!! GAGGAGGGTATTGTAGTTGG+CGG + chr1_2:4519038-4519057 Msa0050580:CDS 50.0%
GCTCAGACTTGCATCAAAGG+TGG + chr1_2:4519073-4519092 Msa0050580:CDS 50.0%
! TTTGTGACCGGAGGGTGTAT+TGG + chr1_2:4520516-4520535 Msa0050580:intron 50.0%
! TTGTGACCGGAGGGTGTATT+GGG + chr1_2:4520517-4520536 Msa0050580:intron 50.0%
CTGCTGGACAGCGAAGAAAA+TGG - chr1_2:4520640-4520659 None:intergenic 50.0%
! GAAGCATCCTACTGTTGTCC+AGG + chr1_2:4521005-4521024 Msa0050580:intron 50.0%
!! TGCACCTGTTGGTAACCCAA+TGG + chr1_2:4521119-4521138 Msa0050580:CDS 50.0%
GATTCGGCATGTAGAAGTGG+CGG + chr1_2:4521502-4521521 Msa0050580:exon 50.0%
GAAGTGGCGGCTGCTTAAAA+TGG + chr1_2:4521515-4521534 Msa0050580:exon 50.0%
ACAGCCGTCTGTCCTACATT+TGG - chr1_2:4521612-4521631 None:intergenic 50.0%
TCCCGGAAATAATCTCGGAG+AGG + chr1_2:4521742-4521761 Msa0050580:three_prime_UTR 50.0%
GGAGAGGTTGCATGATGCCA+TGG - chr1_2:4515199-4515218 None:intergenic 55.0%
GGAGGAAGAGAGGTTGCATG+AGG - chr1_2:4515220-4515239 None:intergenic 55.0%
AAATGGCAGCGGAGGAAGAG+AGG - chr1_2:4515230-4515249 None:intergenic 55.0%
TTCTGCGGGCGGAAGAAGAT+GGG - chr1_2:4515260-4515279 None:intergenic 55.0%
TTTCTGCGGGCGGAAGAAGA+TGG - chr1_2:4515261-4515280 None:intergenic 55.0%
GAGCCCTAAAGTCTCAGCCA+TGG + chr1_2:4515317-4515336 Msa0050580:CDS 55.0%
!! TGGTGTCACTGTTGCCAGAG+AGG + chr1_2:4515581-4515600 Msa0050580:CDS 55.0%
GATGTGGCAGCAGTTAGTGC+AGG + chr1_2:4517541-4517560 Msa0050580:CDS 55.0%
!! GCTGAGGCGTTGAGTAAGGT+TGG + chr1_2:4517592-4517611 Msa0050580:CDS 55.0%
! GGTGTCGTGACACTTGAGGA+GGG + chr1_2:4517622-4517641 Msa0050580:CDS 55.0%
TCGTGACACTTGAGGAGGGA+AGG + chr1_2:4517626-4517645 Msa0050580:CDS 55.0%
ATTTAGGGAGTGGAGAGGCG+GGG - chr1_2:4518407-4518426 None:intergenic 55.0%
!! TTGGCCTGATGGTGTTGGCT+TGG + chr1_2:4518508-4518527 Msa0050580:intron 55.0%
!! TGGCCTGATGGTGTTGGCTT+GGG + chr1_2:4518509-4518528 Msa0050580:intron 55.0%
!! ATGGTGTTGGCTTGGGACCT+TGG + chr1_2:4518516-4518535 Msa0050580:intron 55.0%
! TTGAGGAGGAGCACACTCCA+AGG - chr1_2:4518536-4518555 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG + chr1_2:4518535-4518554 Msa0050580:intron 55.0%
! GATTCTCCGCGGTGCCAATT+TGG + chr1_2:4518568-4518587 Msa0050580:intron 55.0%
TGCAAAACTGTCTGGCGGTG+TGG + chr1_2:4518732-4518751 Msa0050580:intron 55.0%
TGGCGGTGTGGCTGTAATTC+AGG + chr1_2:4518744-4518763 Msa0050580:intron 55.0%
TTTCAGGCCGCTGTTGAGGA+GGG + chr1_2:4519023-4519042 Msa0050580:intron 55.0%
! TGTGACCGGAGGGTGTATTG+GGG + chr1_2:4520518-4520537 Msa0050580:intron 55.0%
CGTTTCCCCAATACACCCTC+CGG - chr1_2:4520526-4520545 None:intergenic 55.0%
GCATCCTACTGTTGTCCAGG+TGG + chr1_2:4521008-4521027 Msa0050580:intron 55.0%
CTGACCACCTGGACAACAGT+AGG - chr1_2:4521015-4521034 None:intergenic 55.0%
CCAAGCAACATCTGACCACC+TGG - chr1_2:4521026-4521045 None:intergenic 55.0%
CCAGGTGGTCAGATGTTGCT+TGG + chr1_2:4521023-4521042 Msa0050580:intron 55.0%
TTACCAACAGGTGCAGCCTC+AGG - chr1_2:4521114-4521133 None:intergenic 55.0%
! GCTGGTGGTTTTTCTGCGGG+CGG - chr1_2:4515271-4515290 None:intergenic 60.0%
! GGGTGTCGTGACACTTGAGG+AGG + chr1_2:4517621-4517640 Msa0050580:CDS 60.0%
AGAGGCGGGGAAAGAGAGAG+GGG - chr1_2:4518394-4518413 None:intergenic 60.0%
GAGAGGCGGGGAAAGAGAGA+GGG - chr1_2:4518395-4518414 None:intergenic 60.0%
GGTCCCAAGCCAACACCATC+AGG - chr1_2:4518515-4518534 None:intergenic 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG + chr1_2:4518542-4518561 Msa0050580:intron 60.0%
! TCCGCGGTGCCAATTTGGGT+GGG + chr1_2:4518573-4518592 Msa0050580:intron 60.0%
CTTTCAGGCCGCTGTTGAGG+AGG + chr1_2:4519022-4519041 Msa0050580:intron 60.0%
GAACCTGAGGCTGCACCTGT+TGG + chr1_2:4521108-4521127 Msa0050580:CDS 60.0%
GGTGAGAGCGACGTTGCTGG+TGG - chr1_2:4515286-4515305 None:intergenic 65.0%
CCTGGTGAGAGCGACGTTGC+TGG - chr1_2:4515289-4515308 None:intergenic 65.0%
CCAGCAACGTCGCTCTCACC+AGG + chr1_2:4515286-4515305 Msa0050580:CDS 65.0%
!! GGTTCTAGGCACTGCGGCCA+AGG + chr1_2:4518268-4518287 Msa0050580:CDS 65.0%
! TCTAGGCACTGCGGCCAAGG+TGG + chr1_2:4518271-4518290 Msa0050580:CDS 65.0%
GAGGCGGGGAAAGAGAGAGG+GGG - chr1_2:4518393-4518412 None:intergenic 65.0%
GGAGAGGCGGGGAAAGAGAG+AGG - chr1_2:4518396-4518415 None:intergenic 65.0%
! CTCCGCGGTGCCAATTTGGG+TGG + chr1_2:4518572-4518591 Msa0050580:intron 65.0%
GCCCACCCAAATTGGCACCG+CGG - chr1_2:4518577-4518596 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 4515064 4522007 4515064 ID=Msa0050580;Name=Msa0050580
chr1_2 mRNA 4515064 4522007 4515064 ID=Msa0050580-mRNA-1;Parent=Msa0050580;Name=Msa0050580-mRNA-1;_AED=0.15;_eAED=0.15;_QI=134|0.84|0.92|1|0.84|0.85|14|397|579
chr1_2 exon 4515064 4515389 4515064 ID=Msa0050580-mRNA-1:exon:1193;Parent=Msa0050580-mRNA-1
chr1_2 exon 4515477 4515602 4515477 ID=Msa0050580-mRNA-1:exon:1194;Parent=Msa0050580-mRNA-1
chr1_2 exon 4516037 4516174 4516037 ID=Msa0050580-mRNA-1:exon:1195;Parent=Msa0050580-mRNA-1
chr1_2 exon 4516284 4516379 4516284 ID=Msa0050580-mRNA-1:exon:1196;Parent=Msa0050580-mRNA-1
chr1_2 exon 4517520 4517762 4517520 ID=Msa0050580-mRNA-1:exon:1197;Parent=Msa0050580-mRNA-1
chr1_2 exon 4517854 4518088 4517854 ID=Msa0050580-mRNA-1:exon:1198;Parent=Msa0050580-mRNA-1
chr1_2 exon 4518177 4518385 4518177 ID=Msa0050580-mRNA-1:exon:1199;Parent=Msa0050580-mRNA-1
chr1_2 exon 4518879 4518950 4518879 ID=Msa0050580-mRNA-1:exon:1200;Parent=Msa0050580-mRNA-1
chr1_2 exon 4519029 4519133 4519029 ID=Msa0050580-mRNA-1:exon:1201;Parent=Msa0050580-mRNA-1
chr1_2 exon 4519317 4519409 4519317 ID=Msa0050580-mRNA-1:exon:1202;Parent=Msa0050580-mRNA-1
chr1_2 exon 4519493 4519585 4519493 ID=Msa0050580-mRNA-1:exon:1203;Parent=Msa0050580-mRNA-1
chr1_2 exon 4521027 4521150 4521027 ID=Msa0050580-mRNA-1:exon:1204;Parent=Msa0050580-mRNA-1
chr1_2 exon 4521502 4521809 4521502 ID=Msa0050580-mRNA-1:exon:1205;Parent=Msa0050580-mRNA-1
chr1_2 exon 4521905 4522007 4521905 ID=Msa0050580-mRNA-1:exon:1206;Parent=Msa0050580-mRNA-1
chr1_2 five_prime_UTR 4515064 4515197 4515064 ID=Msa0050580-mRNA-1:five_prime_utr;Parent=Msa0050580-mRNA-1
chr1_2 CDS 4515198 4515389 4515198 ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2 CDS 4515477 4515602 4515477 ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2 CDS 4516037 4516174 4516037 ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2 CDS 4516284 4516379 4516284 ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2 CDS 4517520 4517762 4517520 ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2 CDS 4517854 4518088 4517854 ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2 CDS 4518177 4518385 4518177 ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2 CDS 4518879 4518950 4518879 ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2 CDS 4519029 4519133 4519029 ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2 CDS 4519317 4519409 4519317 ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2 CDS 4519493 4519585 4519493 ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2 CDS 4521027 4521150 4521027 ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2 CDS 4521502 4521515 4521502 ID=Msa0050580-mRNA-1:cds;Parent=Msa0050580-mRNA-1
chr1_2 three_prime_UTR 4521516 4521809 4521516 ID=Msa0050580-mRNA-1:three_prime_utr;Parent=Msa0050580-mRNA-1
chr1_2 three_prime_UTR 4521905 4522007 4521905 ID=Msa0050580-mRNA-1:three_prime_utr;Parent=Msa0050580-mRNA-1
Gene Sequence

>Msa0050580

ATGGCATCATGCAACCTCTCCTCATGCAACCTCTCTTCCTCCGCTGCCATTTCTTCATTCCCATCTTCTTCCGCCCGCAGAAAAACCACCAGCAACGTCGCTCTCACCAGGAAGAATCGGAGCCCTAAAGTCTCAGCCATGGCCAAGGAGTTGTATTTCAACAAAGATGGTTCCGCTATCAAGAAACTCCAGAATGGTGTGAACAAGCTTGCGGATTTGGTTGGTGTTACTCTTGGTCCTAAGGGAAGGAATGTTGTTCTTGAGAGCAAGTATGGTTCTCCTAAGATTGTTAATGATGGTGTCACTGTTGCCAGAGAGGTGGAGTTGGAGGATCCAGTTGAGAATATTGGTGCTAAATTGGTTAGACAGGCAGCCGCCAAGACAAATGATTTGGCAGGCGATGGAACTACTACCTCTGTTGTTTTGGCTCAGGGTCTTATTGCAGAAGGTGTTAAGGTTGTTGCAGCTGGTGCAAACCCTGTGCTTATCACACGTGGTATTGAGAAGACAGCGAAAGCTCTTGTTGCTGAACTTAAACTAATGTCAAAAGAGGTTGAGGATAGTGAATTGGCTGATGTGGCAGCAGTTAGTGCAGGGAACAATCATGAGGTAGGAAATATGATAGCTGAGGCGTTGAGTAAGGTTGGTAGAAAGGGTGTCGTGACACTTGAGGAGGGAAGGAGTGCTGAAAACAATCTGTATGTTGTTGAGGGCATGCAATTTGATCGAGGATATATTTCACCGTACTTTGTTACAGACAGTGAGAAAATGACCGTTGAATTTGAGAACTGCAAGTTGCTTTTAGTTGACAAAAAGATATCCAATGCAAGGGATCTTATTAACATACTAGAGGACGCAATTAGAAACGGATTCCCTATTTTGATAATTGCAGAGGATATTGAACAAGAAGCTTTGGCAACTCTTGTTGTGAACAAACTTAGAGGATCACTGAAGATTGCAGCACTTAAGGCTCCTGGATTTGGAGAACGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACAGGAGCTGTTGGTAACAATATGTATCTTCCTAATTCGCTTACAGGTACTGTTATCAGAGAGGAGGTTGGACTTAGCTTAGACAAAGCTGGGAATGAGGTTCTAGGCACTGCGGCCAAGGTGGTGCTCACCAAAGATACAACCACAATAGTTGGTGATGGAAGTACCCAAGAAGCAGTTACCAAGCGAGTTTCACAAATTAAGAACCAAATTGAGGTTGGTGCACAAACTGAGACAGAACTCAAGGAAAAGAAATTGAGAGTTGAGGACGCTCTTAATGCCACAAAGGCCGCTGTTGAGGAGGGTATTGTAGTTGGCGGTGGGTGCACTTTGCTCAGACTTGCATCAAAGGTGGATGCAATCAAGGCTACCCTTGCAAATGATGAAGAAAAAGTTGGAGCAGACATTGTTAAAAGAGCTCTTAGTTACCCTCTGAAATTAATAGCAAAAAATGCTGGTGTAAATGGCAGTGTTGTTAGTGAGAAGGTTCTATCCAACGACAATACGAGATACGGATATAATGCTGCAACTGGAAAATATGAAGATTTAATGTCGGCTGGGATCATTGATCCAACAAAGGTGGTCAGATGTTGCTTGGAACATGCAGCCTCTGTTGCGAAAACATTCTTAATGTCAGACTGTGTTGTTGTTGAGATAAAGGAACCTGAGGCTGCACCTGTTGGTAACCCAATGGACAATTCAGGATTCGGCATGTAG
Protein sequence

>Msa0050580

MASCNLSSCNLSSSAAISSFPSSSARRKTTSNVALTRKNRSPKVSAMAKELYFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTAKALVAELKLMSKEVEDSELADVAAVSAGNNHEVGNMIAEALSKVGRKGVVTLEEGRSAENNLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLLVDKKISNARDLINILEDAIRNGFPILIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGAVGNNMYLPNSLTGTVIREEVGLSLDKAGNEVLGTAAKVVLTKDTTTIVGDGSTQEAVTKRVSQIKNQIEVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNTRYGYNAATGKYEDLMSAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEAAPVGNPMDNSGFGM*