AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1369170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369170 MtrunA17_Chr8g0384311 82.072 251 2 1 1 251 1 208 3.33e-143 399
Msa1369170 MtrunA17_Chr3g0130271 75.000 252 18 3 1 251 1 208 3.72e-127 358
Msa1369170 MtrunA17_Chr1g0159481 71.721 244 25 2 9 251 13 213 1.08e-120 342
Msa1369170 MtrunA17_Chr1g0180291 56.612 242 62 1 10 251 11 209 1.33e-93 274
Msa1369170 MtrunA17_Chr7g0265001 55.144 243 65 2 10 251 13 212 2.85e-92 270
Msa1369170 MtrunA17_Chr1g0197331 52.549 255 73 4 1 251 1 211 1.13e-81 243
Msa1369170 MtrunA17_Chr2g0276931 40.984 244 97 5 9 251 5 202 1.47e-51 166
Msa1369170 MtrunA17_Chr7g0250531 40.164 244 98 5 9 251 4 200 1.02e-50 164
Msa1369170 MtrunA17_Chr4g0055651 39.344 244 100 5 9 251 4 200 1.06e-50 164
Msa1369170 MtrunA17_Chr8g0335471 39.344 244 101 5 9 251 4 201 6.23e-49 160
Msa1369170 MtrunA17_Chr1g0182321 36.576 257 106 8 4 251 6 214 1.52e-44 149
Msa1369170 MtrunA17_Chr1g0182301 36.576 257 106 8 4 251 6 214 4.41e-44 148
Msa1369170 MtrunA17_Chr1g0212521 36.546 249 107 6 9 251 11 214 1.88e-43 146
Msa1369170 MtrunA17_Chr4g0030911 36.145 249 107 7 9 251 11 213 6.94e-43 145
Msa1369170 MtrunA17_Chr6g0458081 39.336 211 82 4 10 219 3 168 1.34e-42 144
Msa1369170 MtrunA17_Chr7g0263071 40.488 205 75 5 9 211 11 170 1.34e-42 144
Msa1369170 MtrunA17_Chr2g0327911 38.756 209 82 4 5 211 7 171 2.16e-42 143
Msa1369170 MtrunA17_Chr2g0290891 35.686 255 104 7 10 251 3 210 7.59e-41 139
Msa1369170 MtrunA17_Chr8g0349711 38.806 201 77 4 12 211 5 160 8.97e-41 139
Msa1369170 MtrunA17_Chr2g0325091 38.340 253 101 8 8 251 6 212 1.03e-40 139
Msa1369170 MtrunA17_Chr6g0482721 39.720 214 83 4 11 223 10 178 1.23e-40 139
Msa1369170 MtrunA17_Chr4g0046261 33.460 263 115 6 1 251 1 215 1.14e-39 136
Msa1369170 MtrunA17_Chr2g0276941 33.891 239 109 5 6 240 8 201 1.26e-39 136
Msa1369170 MtrunA17_Chr2g0283131 33.840 263 114 6 1 251 1 215 1.51e-39 136
Msa1369170 MtrunA17_Chr7g0234201 36.923 260 87 8 12 251 12 214 2.02e-39 136
Msa1369170 MtrunA17_Chr2g0319951 37.915 211 85 4 9 218 9 174 2.57e-39 135
Msa1369170 MtrunA17_Chr8g0349681 35.102 245 109 5 12 251 383 582 3.03e-39 143
Msa1369170 MtrunA17_Chr8g0349681 38.806 201 77 5 12 211 174 329 4.52e-35 131
Msa1369170 MtrunA17_Chr8g0349681 36.275 204 84 4 12 214 12 170 3.91e-34 129
Msa1369170 MtrunA17_Chr4g0032201 32.143 252 118 7 8 251 7 213 4.66e-39 135
Msa1369170 MtrunA17_Chr4g0040781 33.840 263 114 6 1 251 1 215 2.12e-38 133
Msa1369170 MtrunA17_Chr3g0123821 31.557 244 112 5 6 248 9 198 7.55e-38 132
Msa1369170 MtrunA17_Chr2g0315551 35.545 211 90 4 9 218 9 174 1.38e-37 131
Msa1369170 MtrunA17_Chr8g0346421 35.681 213 91 4 7 218 20 187 1.40e-37 131
Msa1369170 MtrunA17_Chr3g0112681 33.333 225 101 5 9 229 8 187 1.70e-37 131
Msa1369170 MtrunA17_Chr7g0275991 34.783 230 104 4 8 236 15 199 4.56e-37 130
Msa1369170 MtrunA17_Chr8g0381841 31.557 244 112 5 6 248 10 199 4.84e-37 130
Msa1369170 MtrunA17_Chr1g0189361 35.398 226 100 4 11 235 12 192 6.09e-37 130
Msa1369170 MtrunA17_Chr8g0351861 35.652 230 102 4 7 235 10 194 3.66e-35 125
Msa1369170 MtrunA17_Chr1g0174281 31.395 258 118 7 8 251 10 222 1.27e-34 124
Msa1369170 MtrunA17_Chr8g0392931 36.449 214 90 4 8 220 9 177 6.28e-34 122
Msa1369170 MtrunA17_Chr7g0214241 34.742 213 93 4 12 223 14 181 1.60e-33 120
Msa1369170 MtrunA17_Chr7g0231131 33.175 211 95 4 9 218 11 176 2.81e-33 120
Msa1369170 MtrunA17_Chr5g0433561 31.092 238 113 6 15 251 12 199 7.93e-30 110
Msa1369170 MtrunA17_Chr1g0199331 33.491 212 93 6 15 224 33 198 3.28e-29 109
Msa1369170 MtrunA17_Chr4g0055081 33.168 202 89 5 14 214 10 166 1.92e-28 107
Msa1369170 MtrunA17_Chr3g0109721 29.412 238 117 6 15 251 12 199 2.96e-28 106
Msa1369170 MtrunA17_Chr5g0400131 30.165 242 120 6 14 251 10 206 7.46e-28 105
Msa1369170 MtrunA17_Chr8g0382221 32.178 202 91 5 14 214 10 166 1.78e-27 104
Msa1369170 MtrunA17_Chr3g0123971 32.673 202 90 5 14 214 10 166 2.36e-27 104
Msa1369170 MtrunA17_Chr8g0390561 30.732 205 96 4 15 218 11 170 1.34e-26 102
Msa1369170 MtrunA17_Chr4g0034871 30.556 216 99 8 13 221 8 179 1.27e-22 92.0
Msa1369170 MtrunA17_Chr2g0331691 32.367 207 89 8 13 212 10 172 2.88e-22 91.3
Msa1369170 MtrunA17_Chr4g0004661 31.401 207 91 8 13 212 64 226 8.85e-21 88.6
Msa1369170 MtrunA17_Chr1g0201121 29.268 246 119 9 13 251 8 205 7.80e-20 84.7
Msa1369170 MtrunA17_Chr8g0383261 32.420 219 94 10 1 211 1 173 8.47e-20 84.7
Msa1369170 MtrunA17_Chr6g0466301 32.039 206 89 9 13 211 8 169 4.30e-19 82.8
Msa1369170 MtrunA17_Chr6g0465491 32.039 206 89 9 13 211 8 169 4.30e-19 82.8
Msa1369170 MtrunA17_Chr4g0037021 26.609 233 113 7 13 233 6 192 3.23e-17 77.4
Msa1369170 MtrunA17_Chr8g0371501 26.941 219 102 7 13 219 6 178 4.63e-15 71.6
Msa1369170 MtrunA17_Chr4g0046211 26.946 167 75 5 13 178 6 126 6.40e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369170 AT1G43890.3 70.539 241 28 1 1 241 1 198 3.19e-116 332
Msa1369170 AT1G43890.1 70.539 241 28 1 1 241 1 198 3.19e-116 332
Msa1369170 AT1G43890.2 70.539 241 28 1 1 241 1 198 3.19e-116 332
Msa1369170 AT5G03530.2 56.746 252 65 2 1 251 1 209 1.34e-99 289
Msa1369170 AT5G03530.1 56.746 252 65 2 1 251 1 209 1.34e-99 289
Msa1369170 AT3G09910.3 53.386 251 69 2 1 251 1 203 1.73e-82 246
Msa1369170 AT3G09910.1 53.386 251 69 2 1 251 1 203 1.73e-82 246
Msa1369170 AT3G09910.2 53.386 251 69 2 1 251 1 203 1.73e-82 246
Msa1369170 AT3G09910.5 55.111 225 55 2 1 222 1 182 2.73e-74 224
Msa1369170 AT3G09910.4 55.111 225 55 2 1 222 1 182 2.73e-74 224
Msa1369170 AT5G47200.1 40.164 244 98 5 9 251 4 200 4.26e-50 163
Msa1369170 AT4G17530.1 40.164 244 98 5 9 251 4 200 1.02e-49 162
Msa1369170 AT1G02130.1 39.344 244 101 5 9 251 4 201 5.40e-49 160
Msa1369170 AT3G11730.1 43.627 204 69 4 9 211 4 162 3.80e-46 153
Msa1369170 AT4G35860.1 40.284 211 80 4 10 219 3 168 5.50e-46 153
Msa1369170 AT5G59840.1 40.976 205 74 5 9 211 11 170 1.06e-43 147
Msa1369170 AT4G17160.1 37.600 250 100 7 10 251 3 204 1.20e-43 147
Msa1369170 AT3G53610.2 40.976 205 74 5 9 211 11 170 2.84e-43 146
Msa1369170 AT3G53610.3 40.976 205 74 5 9 211 11 170 2.84e-43 146
Msa1369170 AT3G53610.1 40.976 205 74 5 9 211 11 170 2.84e-43 146
Msa1369170 AT3G09900.1 37.891 256 105 7 4 251 6 215 9.22e-43 145
Msa1369170 AT3G46060.2 40.488 205 75 5 9 211 11 170 1.24e-42 144
Msa1369170 AT3G46060.3 40.488 205 75 5 9 211 11 170 1.24e-42 144
Msa1369170 AT3G46060.1 40.488 205 75 5 9 211 11 170 1.24e-42 144
Msa1369170 AT5G03520.1 37.647 255 105 8 4 251 6 213 3.21e-42 143
Msa1369170 AT4G17170.1 36.759 253 104 7 10 251 3 210 3.93e-42 143
Msa1369170 AT2G33870.1 34.483 261 116 5 1 251 1 216 7.20e-41 140
Msa1369170 AT4G39990.1 34.921 252 108 7 11 251 15 221 2.83e-40 139
Msa1369170 AT1G05810.1 35.565 239 103 5 3 240 2 190 4.15e-40 138
Msa1369170 AT1G05810.2 36.937 222 94 4 3 223 48 224 9.52e-40 138
Msa1369170 AT3G07410.1 37.850 214 87 4 11 223 10 178 1.48e-39 137
Msa1369170 AT1G09630.1 34.583 240 102 5 8 246 7 192 2.48e-39 136
Msa1369170 AT5G60860.1 33.840 263 114 6 1 251 1 215 5.73e-39 135
Msa1369170 AT4G18430.1 33.846 260 118 6 1 251 1 215 6.80e-39 135
Msa1369170 AT1G18200.1 38.813 219 88 4 1 218 1 174 7.11e-39 135
Msa1369170 AT1G06400.1 36.986 219 92 4 1 218 1 174 9.43e-39 134
Msa1369170 AT5G45750.1 35.968 253 105 7 9 251 9 214 1.66e-38 134
Msa1369170 AT5G47520.1 33.463 257 106 6 11 251 12 219 1.99e-38 134
Msa1369170 AT1G28550.1 36.530 219 93 4 1 218 1 174 2.45e-38 133
Msa1369170 AT1G73640.1 39.151 212 83 4 1 211 1 167 2.71e-38 134
Msa1369170 AT1G07410.1 32.271 251 118 6 8 251 7 212 3.80e-38 133
Msa1369170 AT2G43130.1 35.981 214 91 4 11 223 10 178 7.39e-38 132
Msa1369170 AT1G16920.1 36.150 213 90 4 7 218 7 174 8.23e-38 132
Msa1369170 AT3G46830.1 34.906 212 92 4 8 218 7 173 1.68e-37 131
Msa1369170 AT3G46830.2 34.906 212 92 4 8 218 7 173 1.68e-37 131
Msa1369170 AT2G31680.1 34.127 252 110 6 11 251 10 216 2.39e-37 131
Msa1369170 AT3G15060.1 33.077 260 120 5 1 251 1 215 2.42e-37 131
Msa1369170 AT5G59150.1 33.486 218 99 4 7 223 6 178 5.40e-37 130
Msa1369170 AT5G65270.1 32.710 214 98 4 8 220 12 180 2.15e-36 129
Msa1369170 AT4G18800.1 33.333 249 115 5 9 251 9 212 5.48e-36 127
Msa1369170 AT3G12160.1 31.373 255 119 7 8 251 10 219 1.03e-34 124
Msa1369170 AT5G47960.1 30.000 260 125 7 4 251 6 220 9.35e-34 122
Msa1369170 AT1G01200.1 33.645 214 95 5 8 219 23 191 3.65e-33 120
Msa1369170 AT4G39890.1 33.628 226 103 5 14 236 10 191 2.13e-32 118
Msa1369170 AT4G35860.2 37.349 166 59 3 54 219 2 122 8.23e-30 110
Msa1369170 AT5G10260.1 33.168 202 89 5 14 214 10 166 1.26e-28 108
Msa1369170 AT5G03520.2 34.562 217 89 7 41 251 34 203 2.73e-28 107
Msa1369170 AT3G54840.1 33.663 202 87 6 15 214 35 191 3.26e-28 107
Msa1369170 AT3G54840.3 33.831 201 86 6 16 214 2 157 7.13e-28 105
Msa1369170 AT2G22290.1 33.498 203 89 5 14 215 10 167 1.04e-27 105
Msa1369170 AT5G45130.1 29.200 250 124 7 3 251 2 199 1.19e-27 105
Msa1369170 AT4G19640.1 29.412 238 117 6 15 251 12 199 1.22e-27 105
Msa1369170 AT3G54840.2 34.000 200 85 6 15 212 35 189 3.93e-27 103
Msa1369170 AT2G44610.1 32.178 202 91 5 14 214 10 166 1.32e-26 102
Msa1369170 AT5G45130.2 28.814 236 117 6 17 251 22 207 1.48e-25 100
Msa1369170 AT5G64990.1 32.161 199 89 5 14 211 8 161 1.98e-24 97.1
Msa1369170 AT1G22740.1 32.524 206 88 8 13 211 8 169 8.03e-22 90.1
Msa1369170 AT5G64990.2 31.068 206 89 6 14 211 8 168 9.16e-22 90.5
Msa1369170 AT3G18820.1 31.884 207 90 8 13 212 8 170 9.41e-22 90.1
Msa1369170 AT5G39620.1 30.579 242 115 8 14 246 6 203 2.96e-21 88.6
Msa1369170 AT1G52280.1 30.126 239 98 9 13 244 8 184 3.02e-21 89.0
Msa1369170 AT3G16100.1 32.850 207 88 8 13 212 8 170 5.83e-21 88.2
Msa1369170 AT4G09720.1 32.524 206 88 8 13 211 8 169 8.21e-21 87.8
Msa1369170 AT1G49300.2 31.068 206 91 8 13 211 8 169 1.50e-20 87.0
Msa1369170 AT1G49300.1 31.068 206 91 8 13 211 8 169 1.50e-20 87.0
Msa1369170 AT2G21880.1 31.884 207 88 9 13 211 9 170 5.89e-20 85.5
Msa1369170 AT4G09720.4 29.339 242 115 9 13 242 8 205 7.18e-20 85.1
Msa1369170 AT2G44690.1 28.700 223 101 7 13 223 18 194 2.13e-19 84.0
Msa1369170 AT4G09720.3 28.226 248 116 9 13 242 8 211 4.05e-19 83.2
Msa1369170 AT4G19640.2 46.753 77 40 1 15 90 12 88 5.77e-17 75.9
Msa1369170 AT4G35020.1 26.126 222 106 6 13 222 6 181 9.14e-17 76.6
Msa1369170 AT4G35020.2 26.126 222 106 6 13 222 6 181 9.14e-17 76.6
Msa1369170 AT4G35020.3 26.126 222 106 6 13 222 6 181 9.14e-17 76.6
Msa1369170 AT4G19640.3 46.753 77 40 1 15 90 12 88 1.11e-16 76.3
Msa1369170 AT3G51300.1 27.650 217 99 7 15 219 8 178 1.35e-16 76.3
Msa1369170 AT3G48040.1 27.803 223 102 8 14 224 9 184 3.99e-16 75.1
Msa1369170 AT1G20090.1 26.484 219 103 7 13 219 5 177 7.48e-16 73.9
Msa1369170 AT1G75840.1 26.484 219 103 7 13 219 6 178 9.34e-16 73.9
Msa1369170 AT5G55080.1 27.650 217 105 9 5 218 4 171 2.76e-15 73.2
Msa1369170 AT3G48040.2 27.700 213 95 8 15 214 10 176 1.80e-13 67.0
Msa1369170 AT5G46025.1 37.500 88 54 1 133 220 22 108 1.02e-11 60.8

Find 80 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAATATTGCAGTCATTT+TGG 0.199457 tig0018755:-124084 None:intergenic
TTACAAATCTCTCTGAAATA+TGG 0.215859 tig0018755:+124260 Msa1369170:CDS
GCAATCTGTTTAATGATCTT+TGG 0.237850 tig0018755:+124113 Msa1369170:CDS
TAGCACTGCATTCAATAAAT+AGG 0.259648 tig0018755:-125428 None:intergenic
CAGAAAATGGATTCGAGTTC+AGG 0.266933 tig0018755:+122784 Msa1369170:exon
ATAGACTTTGCTAGGGAATA+TGG 0.277032 tig0018755:+125402 Msa1369170:CDS
CACTCAGAGCACATCTTTAC+AGG 0.282566 tig0018755:-126123 None:intergenic
AAGCTTGCCATTTGGGATAC+TGG 0.289194 tig0018755:+123063 Msa1369170:CDS
TTGTTAATGATTGGGGATTC+TGG 0.299697 tig0018755:+122835 Msa1369170:CDS
CCTTAGAGCCCTCGGCTAAA+AGG 0.308198 tig0018755:-125789 None:intergenic
ATGTTAGAAATCCATGAAAA+TGG 0.308707 tig0018755:-125938 None:intergenic
ATAATAAGATTTGAACATAT+TGG 0.312652 tig0018755:+126198 Msa1369170:three_prime_UTR
AGTTTCTTTCTGATAGATAC+TGG 0.314153 tig0018755:+122563 Msa1369170:five_prime_UTR
AAAGCTTAAGCTTGCCATTT+GGG 0.317285 tig0018755:+123056 Msa1369170:CDS
GATCGCCGACCCACTAATAT+TGG 0.333031 tig0018755:+122585 Msa1369170:five_prime_UTR
TGTTCAAATTGTTAATGATT+GGG 0.336729 tig0018755:+122827 Msa1369170:CDS
ATGTTCAAATTGTTAATGAT+TGG 0.346507 tig0018755:+122826 Msa1369170:CDS
AGTCTTGATTTGTTGAATAA+AGG 0.348413 tig0018755:-124297 None:intergenic
ACCAAATAATGCAGCTGGTC+AGG 0.352646 tig0018755:+123438 Msa1369170:intron
TGGTAAAGCAAATGCATGTT+AGG 0.369362 tig0018755:+122540 Msa1369170:five_prime_UTR
AAAAGCTTAAGCTTGCCATT+TGG 0.383397 tig0018755:+123055 Msa1369170:CDS
GAAGTTGGAACCTAGAAAAC+TGG 0.389416 tig0018755:-125998 None:intergenic
GGATTTCTAACATAATTTGC+TGG 0.390362 tig0018755:+125948 Msa1369170:three_prime_UTR
GGACTTTCTTTGTTAGTGAT+GGG 0.390599 tig0018755:+124053 Msa1369170:CDS
TGGACTTTCTTTGTTAGTGA+TGG 0.392991 tig0018755:+124052 Msa1369170:CDS
AAGAAAGAAACCAATATTAG+TGG 0.394278 tig0018755:-122595 None:intergenic
TACAAATCTCTCTGAAATAT+GGG 0.405801 tig0018755:+124261 Msa1369170:CDS
GATGATCTCTCTCCCACCAT+TGG 0.416793 tig0018755:+122904 Msa1369170:CDS
GTTTAATGATCTTTGGAGTT+GGG 0.421104 tig0018755:+124120 Msa1369170:CDS
GACTGCATGAAGATGCTTGT+TGG 0.424153 tig0018755:+124316 Msa1369170:CDS
TGTTTAATGATCTTTGGAGT+TGG 0.442493 tig0018755:+124119 Msa1369170:CDS
CTCTTGTCATCTTAATCTGT+TGG 0.452730 tig0018755:+126227 Msa1369170:three_prime_UTR
TGGATGCAATGCCCTTCTCT+TGG 0.453432 tig0018755:-125918 None:intergenic
AAGAGGGAATAGACTTTGCT+AGG 0.457004 tig0018755:+125394 Msa1369170:CDS
TAATAATCTGTAGGATTCAA+TGG 0.458814 tig0018755:+124023 Msa1369170:intron
TTGTGGGAGGGGATGCTTGT+TGG 0.459665 tig0018755:+122520 Msa1369170:five_prime_UTR
GGAACCTAGAAAACTGGAAA+TGG 0.464492 tig0018755:-125992 None:intergenic
GTTCAAATTGTTAATGATTG+GGG 0.472425 tig0018755:+122828 Msa1369170:CDS
CTACATATTCAAGACAAAAC+AGG 0.472563 tig0018755:-126020 None:intergenic
GGTCAAATATGTCACGATAG+AGG 0.481991 tig0018755:+123029 Msa1369170:CDS
TTCAAGACAAAACAGGAAGT+TGG 0.484863 tig0018755:-126013 None:intergenic
CACGCATCAACTTAAAGAAA+AGG 0.486688 tig0018755:-124149 None:intergenic
GACTTTCTTTGTTAGTGATG+GGG 0.491805 tig0018755:+124054 Msa1369170:CDS
CTAAATATTAGAAACAGGCT+TGG 0.493825 tig0018755:-126290 None:intergenic
TGTGTGACAGAATCAGAAAA+TGG 0.498954 tig0018755:+122771 Msa1369170:intron
ATGATTGGGGATTCTGGTGT+TGG 0.503280 tig0018755:+122841 Msa1369170:CDS
AGAAAATGGATTCGAGTTCA+GGG 0.507840 tig0018755:+122785 Msa1369170:exon
TTGTATAGTACCCAATGAAA+AGG 0.512553 tig0018755:-122661 None:intergenic
TAGAGTTGTGACAAAGAAAG+AGG 0.518206 tig0018755:+125377 Msa1369170:CDS
GTCAAATATGTCACGATAGA+GGG 0.528925 tig0018755:+123030 Msa1369170:CDS
TGTTGGAAACAAAGTAGATA+AGG 0.532932 tig0018755:+124333 Msa1369170:CDS
AAGCAGCATTTCAAGAATCA+TGG 0.537825 tig0018755:+125892 Msa1369170:three_prime_UTR
GTAGGATTCAATGGCCAAGT+TGG 0.538976 tig0018755:+124032 Msa1369170:intron
AGAGTTGTGACAAAGAAAGA+GGG 0.538991 tig0018755:+125378 Msa1369170:CDS
TAGTACCCAATGAAAAGGAC+AGG 0.550018 tig0018755:-122656 None:intergenic
TCTTACTACAGAGGGGCTCA+AGG 0.553803 tig0018755:+123484 Msa1369170:CDS
GAATCATGGTCTCCAAGAGA+AGG 0.558192 tig0018755:+125906 Msa1369170:three_prime_UTR
TGACAAGTTCTTACTACAGA+GGG 0.566870 tig0018755:+123476 Msa1369170:CDS
GAAAGGAAACGAACCAATGG+TGG 0.568646 tig0018755:-122917 None:intergenic
ATACATACCAGTATCCCAAA+TGG 0.569683 tig0018755:-123070 None:intergenic
TCTCTCTGAAATATGGGCAA+AGG 0.571068 tig0018755:+124267 Msa1369170:CDS
GAGCCCTCGGCTAAAAGGCT+AGG 0.572458 tig0018755:-125784 None:intergenic
AGGGGCTCAAGGAATCATCA+TGG 0.573145 tig0018755:+123495 Msa1369170:CDS
AGAGGGAATAGACTTTGCTA+GGG 0.577586 tig0018755:+125395 Msa1369170:CDS
GCTTCAGCAACAACCGCTGG+TGG 0.578132 tig0018755:-125857 None:intergenic
CATCTTTACAGGTCTTCACA+TGG 0.584085 tig0018755:-126112 None:intergenic
AGAAAGAAACCAATATTAGT+GGG 0.587334 tig0018755:-122594 None:intergenic
ATAGCTTCAGCAACAACCGC+TGG 0.588465 tig0018755:-125860 None:intergenic
CTAACAAAGAAAGTCCAACT+TGG 0.594978 tig0018755:-124046 None:intergenic
GGGGCTCAAGGAATCATCAT+GGG 0.609277 tig0018755:+123496 Msa1369170:CDS
AGAAACCAATATTAGTGGGT+CGG 0.609461 tig0018755:-122590 None:intergenic
AATCATGGTCTCCAAGAGAA+GGG 0.614124 tig0018755:+125907 Msa1369170:three_prime_UTR
GAGATCATCAAAATCATCTG+AGG 0.628890 tig0018755:-122890 None:intergenic
CAGTCTGATGCATCCACCAG+CGG 0.644893 tig0018755:+125844 Msa1369170:CDS
AAAGGAAACGAACCAATGGT+GGG 0.650141 tig0018755:-122916 None:intergenic
ATGTAGATGTAATATAGTGA+CGG 0.650213 tig0018755:+126037 Msa1369170:three_prime_UTR
CTGGTGGATGCATCAGACTG+AGG 0.668797 tig0018755:-125841 None:intergenic
CTGACAAGTTCTTACTACAG+AGG 0.693244 tig0018755:+123475 Msa1369170:CDS
ATGCAGTTTATGACGTAACA+CGG 0.694182 tig0018755:+124227 Msa1369170:intron
GACAAGTTCTTACTACAGAG+GGG 0.732850 tig0018755:+123477 Msa1369170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACATTTTTGTATAATTGT+GGG + tig0018755:122504-122523 Msa1369170:five_prime_UTR 15.0%
!! AGATAGAATTAAATCAATTA+AGG - tig0018755:122946-122965 None:intergenic 15.0%
!!! TTATTTTGTAATCTTGTTAT+TGG + tig0018755:123175-123194 Msa1369170:intron 15.0%
!! TGTAAAATGTGAATTAATTT+AGG - tig0018755:123790-123809 None:intergenic 15.0%
!! TAATAATCAATATCATCATT+GGG - tig0018755:123857-123876 None:intergenic 15.0%
!! ATTTGACATAAAATTCTTAA+AGG - tig0018755:124363-124382 None:intergenic 15.0%
!!! AAATTTATCCATGTATTTTT+TGG + tig0018755:124441-124460 Msa1369170:intron 15.0%
!! AAAAAATTGAATATCATTAG+AGG + tig0018755:124955-124974 Msa1369170:intron 15.0%
!! AAAAAATTGAATATCATTAG+AGG + tig0018755:124955-124974 Msa1369170:intron 15.0%
!!! AGTAAAAAAGAACATTTTTA+AGG + tig0018755:125813-125832 Msa1369170:CDS 15.0%
!! ATAATAAGATTTGAACATAT+TGG + tig0018755:126198-126217 Msa1369170:three_prime_UTR 15.0%
!!! GAAACATTTTTGTATAATTG+TGG + tig0018755:122503-122522 Msa1369170:five_prime_UTR 20.0%
!! ATGTTCAAATTGTTAATGAT+TGG + tig0018755:122826-122845 Msa1369170:CDS 20.0%
!! TGTTCAAATTGTTAATGATT+GGG + tig0018755:122827-122846 Msa1369170:CDS 20.0%
!! TAAATCAATTAAGGAATGAA+AGG - tig0018755:122937-122956 None:intergenic 20.0%
!! TAAATAAAACTCCAATCTAA+TGG - tig0018755:123158-123177 None:intergenic 20.0%
!! TAATTATTGGTAAAAGTTGA+TGG - tig0018755:123218-123237 None:intergenic 20.0%
!! TACCAATAATTAATCTTTAG+CGG + tig0018755:123226-123245 Msa1369170:intron 20.0%
!!! GATATTGGTTTTTAGATTAA+AGG + tig0018755:123335-123354 Msa1369170:intron 20.0%
!! AGTAGAATATCAATCAAATA+GGG - tig0018755:123408-123427 None:intergenic 20.0%
!! AAGTAGAATATCAATCAAAT+AGG - tig0018755:123409-123428 None:intergenic 20.0%
!! ACAGTAAATAAATGTACTAT+TGG - tig0018755:123559-123578 None:intergenic 20.0%
!!! AATTATTTGTTTTCTGAGTA+GGG + tig0018755:123705-123724 Msa1369170:intron 20.0%
!! CTAATAATCAATATCATCAT+TGG - tig0018755:123858-123877 None:intergenic 20.0%
!! TAAATTAAATACCACATGAA+AGG - tig0018755:125126-125145 None:intergenic 20.0%
!!! ATTTAATTTGTGATGAACAA+TGG + tig0018755:125707-125726 Msa1369170:intron 20.0%
!! ATTTTTGTATAATTGTGGGA+GGG + tig0018755:122508-122527 Msa1369170:five_prime_UTR 25.0%
! AGAAAGAAACCAATATTAGT+GGG - tig0018755:122597-122616 None:intergenic 25.0%
! AAGAAAGAAACCAATATTAG+TGG - tig0018755:122598-122617 None:intergenic 25.0%
! GTTCAAATTGTTAATGATTG+GGG + tig0018755:122828-122847 Msa1369170:CDS 25.0%
! AATGGACAAGGATTTAAAAA+TGG - tig0018755:123140-123159 None:intergenic 25.0%
!!! TTTTGTAATCTTGTTATTGG+TGG + tig0018755:123178-123197 Msa1369170:intron 25.0%
! ACCAATAATTAATCTTTAGC+GGG + tig0018755:123227-123246 Msa1369170:intron 25.0%
! TTAAAGGCCAATTGTATATA+TGG + tig0018755:123351-123370 Msa1369170:intron 25.0%
! TAAAGGCCAATTGTATATAT+GGG + tig0018755:123352-123371 Msa1369170:intron 25.0%
! TATTGGGAAGACAATTTAAA+AGG - tig0018755:123385-123404 None:intergenic 25.0%
!! TATCAATCAAATAGGGTATT+GGG - tig0018755:123401-123420 None:intergenic 25.0%
! ATATCAATCAAATAGGGTAT+TGG - tig0018755:123402-123421 None:intergenic 25.0%
! ATATATTCAGTGGATAGAAT+AGG + tig0018755:123613-123632 Msa1369170:intron 25.0%
!!! GAATTATTTGTTTTCTGAGT+AGG + tig0018755:123704-123723 Msa1369170:intron 25.0%
!! CTTTAAACATCAAGTAGTTT+TGG - tig0018755:123737-123756 None:intergenic 25.0%
! TAGGTAAATATTTAACCATG+AGG - tig0018755:123771-123790 None:intergenic 25.0%
! TTGATATCATTCATATTGCT+TGG + tig0018755:123942-123961 Msa1369170:intron 25.0%
! TGATATCATTCATATTGCTT+GGG + tig0018755:123943-123962 Msa1369170:intron 25.0%
! TCTTTCATCTAATAATCTGT+AGG + tig0018755:124014-124033 Msa1369170:intron 25.0%
! TAATAATCTGTAGGATTCAA+TGG + tig0018755:124023-124042 Msa1369170:intron 25.0%
!! TACAAATATTGCAGTCATTT+TGG - tig0018755:124087-124106 None:intergenic 25.0%
! AACAAAATATAGAGGTAATC+AGG - tig0018755:124197-124216 None:intergenic 25.0%
!!! TTACAAATCTCTCTGAAATA+TGG + tig0018755:124260-124279 Msa1369170:CDS 25.0%
!!! TACAAATCTCTCTGAAATAT+GGG + tig0018755:124261-124280 Msa1369170:CDS 25.0%
!!! AGTCTTGATTTGTTGAATAA+AGG - tig0018755:124300-124319 None:intergenic 25.0%
!! AATGACATAGATTTTGAACA+AGG - tig0018755:124471-124490 None:intergenic 25.0%
!! ATTCAATCGTTAGCAAATTT+TGG + tig0018755:124530-124549 Msa1369170:intron 25.0%
! TTAATTGTATAACAGATGGA+CGG - tig0018755:124749-124768 None:intergenic 25.0%
! CAACTTAATTGTATAACAGA+TGG - tig0018755:124753-124772 None:intergenic 25.0%
!!! TTGTTTTTCTAGTTTGCATT+TGG + tig0018755:124770-124789 Msa1369170:intron 25.0%
!! TCTTTTACATATGTAGAAGT+TGG + tig0018755:124818-124837 Msa1369170:intron 25.0%
! TTCCTAAAAGTTATCATTTC+CGG - tig0018755:124932-124951 None:intergenic 25.0%
!! TTTTTCTTGCCTTACATTAT+AGG + tig0018755:125302-125321 Msa1369170:intron 25.0%
! ATGTCAAATCCTATAATGTA+AGG - tig0018755:125314-125333 None:intergenic 25.0%
!!! CTGATTTACTAACCTTATTT+TGG + tig0018755:125519-125538 Msa1369170:intron 25.0%
! ATGTTAGAAATCCATGAAAA+TGG - tig0018755:125941-125960 None:intergenic 25.0%
! ATGTAGATGTAATATAGTGA+CGG + tig0018755:126037-126056 Msa1369170:three_prime_UTR 25.0%
! CATTTTTGTATAATTGTGGG+AGG + tig0018755:122507-122526 Msa1369170:five_prime_UTR 30.0%
! TTTTTGTATAATTGTGGGAG+GGG + tig0018755:122509-122528 Msa1369170:five_prime_UTR 30.0%
AGTTTCTTTCTGATAGATAC+TGG + tig0018755:122563-122582 Msa1369170:five_prime_UTR 30.0%
TTGTATAGTACCCAATGAAA+AGG - tig0018755:122664-122683 None:intergenic 30.0%
!!! TATCACAGGTGTTGATTTTA+AGG + tig0018755:123008-123027 Msa1369170:intron 30.0%
TAAATCCTTGTCCATTAGAT+TGG + tig0018755:123144-123163 Msa1369170:intron 30.0%
CCAATAATTAATCTTTAGCG+GGG + tig0018755:123228-123247 Msa1369170:intron 30.0%
AAAGGCCAATTGTATATATG+GGG + tig0018755:123353-123372 Msa1369170:intron 30.0%
AAGAATTGAGAGGCAAAAAA+GGG - tig0018755:123536-123555 None:intergenic 30.0%
TCTATCCACTGAATATATCA+CGG - tig0018755:123611-123630 None:intergenic 30.0%
!! AGCTTCGATTTTGATAAGAA+TGG - tig0018755:123897-123916 None:intergenic 30.0%
GCAATCTGTTTAATGATCTT+TGG + tig0018755:124113-124132 Msa1369170:CDS 30.0%
!! TGTTTAATGATCTTTGGAGT+TGG + tig0018755:124119-124138 Msa1369170:CDS 30.0%
!! GTTTAATGATCTTTGGAGTT+GGG + tig0018755:124120-124139 Msa1369170:CDS 30.0%
!!! GTTTTGGGAACAAAATATAG+AGG - tig0018755:124205-124224 None:intergenic 30.0%
! TCATAAACTGCATCAGTTTT+GGG - tig0018755:124220-124239 None:intergenic 30.0%
TGTTGGAAACAAAGTAGATA+AGG + tig0018755:124333-124352 Msa1369170:CDS 30.0%
ACTGACATGATTTGAATACA+AGG - tig0018755:124403-124422 None:intergenic 30.0%
TTTCTTCCTTATAGAGAACT+TGG + tig0018755:124506-124525 Msa1369170:intron 30.0%
TGAATTCCAAGTTCTCTATA+AGG - tig0018755:124515-124534 None:intergenic 30.0%
TTGACACTTCTGCTTATTTA+AGG + tig0018755:124675-124694 Msa1369170:intron 30.0%
!! CTGCTTATTTAAGGTGTTTT+TGG + tig0018755:124684-124703 Msa1369170:intron 30.0%
TAATTGTATAACAGATGGAC+GGG - tig0018755:124748-124767 None:intergenic 30.0%
TAAAAGTTATCATTTCCGGA+GGG - tig0018755:124928-124947 None:intergenic 30.0%
TAAACTTTATCATTTCCGGA+GGG - tig0018755:125022-125041 None:intergenic 30.0%
TCCGGAAATGATAAAGTTTA+GGG + tig0018755:125022-125041 Msa1369170:intron 30.0%
TCCCTAAACTTTATCATTTC+CGG - tig0018755:125026-125045 None:intergenic 30.0%
GTAAAAGAAGACAATGAAGA+AGG + tig0018755:125089-125108 Msa1369170:intron 30.0%
CATACAAATCATGAATTGCA+TGG + tig0018755:125150-125169 Msa1369170:intron 30.0%
! CTGTTATCACATTTGTTTCT+AGG + tig0018755:125238-125257 Msa1369170:intron 30.0%
TTATAGGATTTGACATGTGT+TGG + tig0018755:125318-125337 Msa1369170:intron 30.0%
! ATGTTTGTGCTTGTATTTTC+AGG + tig0018755:125347-125366 Msa1369170:intron 30.0%
TAGCACTGCATTCAATAAAT+AGG - tig0018755:125431-125450 None:intergenic 30.0%
TGTGAAACGTAAATTCTCTT+TGG + tig0018755:125552-125571 Msa1369170:intron 30.0%
GTGAAACGTAAATTCTCTTT+GGG + tig0018755:125553-125572 Msa1369170:intron 30.0%
! TGTTTTTCACACAAGTTCAA+TGG + tig0018755:125646-125665 Msa1369170:intron 30.0%
!!! ACTGGGGATTTTTTTTTCTT+TGG + tig0018755:125739-125758 Msa1369170:intron 30.0%
! GGATTTCTAACATAATTTGC+TGG + tig0018755:125948-125967 Msa1369170:three_prime_UTR 30.0%
CTACATATTCAAGACAAAAC+AGG - tig0018755:126023-126042 None:intergenic 30.0%
TGGTAAAGCAAATGCATGTT+AGG + tig0018755:122540-122559 Msa1369170:five_prime_UTR 35.0%
! AGAAACCAATATTAGTGGGT+CGG - tig0018755:122593-122612 None:intergenic 35.0%
! TTCATTCCTGTCCTTTTCAT+TGG + tig0018755:122650-122669 Msa1369170:five_prime_UTR 35.0%
! TCATTCCTGTCCTTTTCATT+GGG + tig0018755:122651-122670 Msa1369170:five_prime_UTR 35.0%
TGTGTGACAGAATCAGAAAA+TGG + tig0018755:122771-122790 Msa1369170:intron 35.0%
! AGAAAATGGATTCGAGTTCA+GGG + tig0018755:122785-122804 Msa1369170:exon 35.0%
TTGTTAATGATTGGGGATTC+TGG + tig0018755:122835-122854 Msa1369170:CDS 35.0%
GAGATCATCAAAATCATCTG+AGG - tig0018755:122893-122912 None:intergenic 35.0%
AATGAAAGGAAACGAACCAA+TGG - tig0018755:122923-122942 None:intergenic 35.0%
GTCAAATATGTCACGATAGA+GGG + tig0018755:123030-123049 Msa1369170:CDS 35.0%
AAAAGCTTAAGCTTGCCATT+TGG + tig0018755:123055-123074 Msa1369170:CDS 35.0%
! AAAGCTTAAGCTTGCCATTT+GGG + tig0018755:123056-123075 Msa1369170:CDS 35.0%
ATACATACCAGTATCCCAAA+TGG - tig0018755:123073-123092 None:intergenic 35.0%
! AAACTCCAATCTAATGGACA+AGG - tig0018755:123152-123171 None:intergenic 35.0%
CCCCGCTAAAGATTAATTAT+TGG - tig0018755:123231-123250 None:intergenic 35.0%
ACGAAAAAATGTGGTTGCAA+GGG - tig0018755:123258-123277 None:intergenic 35.0%
TTTCAAGCCACGAAAAAATG+TGG - tig0018755:123267-123286 None:intergenic 35.0%
TTGAAATGAGACCATGCTTA+AGG + tig0018755:123281-123300 Msa1369170:intron 35.0%
TGAAATGAGACCATGCTTAA+GGG + tig0018755:123282-123301 Msa1369170:intron 35.0%
CACTTGGAACAATGTGATAT+TGG + tig0018755:123320-123339 Msa1369170:intron 35.0%
AAGGCCAATTGTATATATGG+GGG + tig0018755:123354-123373 Msa1369170:intron 35.0%
! GTTTTACCAAATAATGCAGC+TGG + tig0018755:123433-123452 Msa1369170:intron 35.0%
TGACAAGTTCTTACTACAGA+GGG + tig0018755:123476-123495 Msa1369170:CDS 35.0%
GAAGAATTGAGAGGCAAAAA+AGG - tig0018755:123537-123556 None:intergenic 35.0%
GTACTATTGGAAGAATTGAG+AGG - tig0018755:123546-123565 None:intergenic 35.0%
AAGAATACAGCAATCCAGAT+TGG - tig0018755:123642-123661 None:intergenic 35.0%
!!! AAAGCTTTTTTGTTGCCTCA+TGG + tig0018755:123753-123772 Msa1369170:intron 35.0%
! CTAACAAATCAGTTGTTTCC+AGG - tig0018755:123986-124005 None:intergenic 35.0%
CTAACAAAGAAAGTCCAACT+TGG - tig0018755:124049-124068 None:intergenic 35.0%
TGGACTTTCTTTGTTAGTGA+TGG + tig0018755:124052-124071 Msa1369170:CDS 35.0%
GGACTTTCTTTGTTAGTGAT+GGG + tig0018755:124053-124072 Msa1369170:CDS 35.0%
GACTTTCTTTGTTAGTGATG+GGG + tig0018755:124054-124073 Msa1369170:CDS 35.0%
!! ATATTGCAGTCATTTTGGCA+GGG - tig0018755:124082-124101 None:intergenic 35.0%
!! AATATTGCAGTCATTTTGGC+AGG - tig0018755:124083-124102 None:intergenic 35.0%
CACGCATCAACTTAAAGAAA+AGG - tig0018755:124152-124171 None:intergenic 35.0%
! GCGTGTTGAAAACTTAGTTT+TGG + tig0018755:124167-124186 Msa1369170:intron 35.0%
! GTCATAAACTGCATCAGTTT+TGG - tig0018755:124221-124240 None:intergenic 35.0%
ATGCAGTTTATGACGTAACA+CGG + tig0018755:124227-124246 Msa1369170:intron 35.0%
AAGGCAAGCCAAAAAATACA+TGG - tig0018755:124452-124471 None:intergenic 35.0%
!! TTGTTTTGTGCTTTTGCTTC+TGG + tig0018755:124880-124899 Msa1369170:intron 35.0%
CTAAAAGTTATCATTTCCGG+AGG - tig0018755:124929-124948 None:intergenic 35.0%
! CTCCGGAAATGATAACTTTT+AGG + tig0018755:124927-124946 Msa1369170:intron 35.0%
CTAAACTTTATCATTTCCGG+AGG - tig0018755:125023-125042 None:intergenic 35.0%
CTCCGGAAATGATAAAGTTT+AGG + tig0018755:125021-125040 Msa1369170:intron 35.0%
TTTGTTTGCATCCTTTCATG+TGG + tig0018755:125112-125131 Msa1369170:intron 35.0%
TGTAAAACTGAGAGTCCAAA+TGG - tig0018755:125179-125198 None:intergenic 35.0%
!! TTTGTGCTTGTATTTTCAGG+AGG + tig0018755:125350-125369 Msa1369170:intron 35.0%
!! TTGTGCTTGTATTTTCAGGA+GGG + tig0018755:125351-125370 Msa1369170:intron 35.0%
TAGAGTTGTGACAAAGAAAG+AGG + tig0018755:125377-125396 Msa1369170:CDS 35.0%
AGAGTTGTGACAAAGAAAGA+GGG + tig0018755:125378-125397 Msa1369170:CDS 35.0%
ATAGACTTTGCTAGGGAATA+TGG + tig0018755:125402-125421 Msa1369170:CDS 35.0%
!!! CTTTGAAGAGCTTGTTTTGA+AGG + tig0018755:125476-125495 Msa1369170:CDS 35.0%
!!! CTAACCTTATTTTGGTCAGT+AGG + tig0018755:125527-125546 Msa1369170:intron 35.0%
TTTCCACCTTCTAATATGCA+TGG - tig0018755:125584-125603 None:intergenic 35.0%
GTTCAATGGCTGACAATAAA+TGG + tig0018755:125660-125679 Msa1369170:intron 35.0%
!!! TTTTTTCTTTGGTTGCATGC+AGG + tig0018755:125750-125769 Msa1369170:intron 35.0%
AAGCAGCATTTCAAGAATCA+TGG + tig0018755:125892-125911 Msa1369170:three_prime_UTR 35.0%
TTCAAGACAAAACAGGAAGT+TGG - tig0018755:126016-126035 None:intergenic 35.0%
CTCTTGTCATCTTAATCTGT+TGG + tig0018755:126227-126246 Msa1369170:three_prime_UTR 35.0%
TAGTACCCAATGAAAAGGAC+AGG - tig0018755:122659-122678 None:intergenic 40.0%
! CAGAAAATGGATTCGAGTTC+AGG + tig0018755:122784-122803 Msa1369170:exon 40.0%
AAAGGAAACGAACCAATGGT+GGG - tig0018755:122919-122938 None:intergenic 40.0%
CAACACCTGTGATAGATAGT+AGG - tig0018755:123002-123021 None:intergenic 40.0%
GGTCAAATATGTCACGATAG+AGG + tig0018755:123029-123048 Msa1369170:CDS 40.0%
CACGAAAAAATGTGGTTGCA+AGG - tig0018755:123259-123278 None:intergenic 40.0%
!!! CTTGCAACCACATTTTTTCG+TGG + tig0018755:123257-123276 Msa1369170:intron 40.0%
GATCCAAATCCACTTTCACT+TGG + tig0018755:123304-123323 Msa1369170:intron 40.0%
! GTTCCAAGTGAAAGTGGATT+TGG - tig0018755:123310-123329 None:intergenic 40.0%
CACATTGTTCCAAGTGAAAG+TGG - tig0018755:123316-123335 None:intergenic 40.0%
CTCTCCCCCATATATACAAT+TGG - tig0018755:123361-123380 None:intergenic 40.0%
CTGACAAGTTCTTACTACAG+AGG + tig0018755:123475-123494 Msa1369170:CDS 40.0%
GACAAGTTCTTACTACAGAG+GGG + tig0018755:123477-123496 Msa1369170:CDS 40.0%
AGAGGCAAAAAAGGGAGAAT+AGG - tig0018755:123528-123547 None:intergenic 40.0%
GATGACCGTGATATATTCAG+TGG + tig0018755:123603-123622 Msa1369170:intron 40.0%
GATAGAATAGGATGCCAATC+TGG + tig0018755:123625-123644 Msa1369170:intron 40.0%
! TTGTTTTCTGAGTAGGGCTA+AGG + tig0018755:123711-123730 Msa1369170:intron 40.0%
!! TCATTTTTCTGACCTCTGCT+GGG + tig0018755:123819-123838 Msa1369170:intron 40.0%
GAATATCAGCCAGTATATCC+TGG + tig0018755:123965-123984 Msa1369170:intron 40.0%
! CAGTTGTTTCCAGGATATAC+TGG - tig0018755:123977-123996 None:intergenic 40.0%
!! TCTCTCTGAAATATGGGCAA+AGG + tig0018755:124267-124286 Msa1369170:CDS 40.0%
!! GGAAGAAAACTTTAAAGCGC+TGG - tig0018755:124494-124513 None:intergenic 40.0%
CGATCTGCGATTTACTTAGA+AGG - tig0018755:124576-124595 None:intergenic 40.0%
TCTAAGTAAATCGCAGATCG+CGG + tig0018755:124576-124595 Msa1369170:intron 40.0%
!! TTTAGAGAGTACTGCAGAGA+AGG + tig0018755:124637-124656 Msa1369170:intron 40.0%
TGAATTGCATGGACTCCATT+TGG + tig0018755:125161-125180 Msa1369170:intron 40.0%
AAGAGGGAATAGACTTTGCT+AGG + tig0018755:125394-125413 Msa1369170:CDS 40.0%
AGAGGGAATAGACTTTGCTA+GGG + tig0018755:125395-125414 Msa1369170:CDS 40.0%
CACACCTACTGACCAAAATA+AGG - tig0018755:125534-125553 None:intergenic 40.0%
GTGCAACCATGCATATTAGA+AGG + tig0018755:125575-125594 Msa1369170:intron 40.0%
CAACCATGCATATTAGAAGG+TGG + tig0018755:125578-125597 Msa1369170:intron 40.0%
AAGATGAGCCTGTGCAATTT+CGG + tig0018755:125615-125634 Msa1369170:intron 40.0%
TTGTGATGAACAATGGCTGA+TGG + tig0018755:125714-125733 Msa1369170:intron 40.0%
AATCATGGTCTCCAAGAGAA+GGG + tig0018755:125907-125926 Msa1369170:three_prime_UTR 40.0%
! GAAGCCATTTCCAGTTTTCT+AGG + tig0018755:125988-126007 Msa1369170:three_prime_UTR 40.0%
GGAACCTAGAAAACTGGAAA+TGG - tig0018755:125995-126014 None:intergenic 40.0%
GAAGTTGGAACCTAGAAAAC+TGG - tig0018755:126001-126020 None:intergenic 40.0%
CATCTTTACAGGTCTTCACA+TGG - tig0018755:126115-126134 None:intergenic 40.0%
ATGATTGGGGATTCTGGTGT+TGG + tig0018755:122841-122860 Msa1369170:CDS 45.0%
GAAAGGAAACGAACCAATGG+TGG - tig0018755:122920-122939 None:intergenic 45.0%
CGTCTCCTACTATCTATCAC+AGG + tig0018755:122994-123013 Msa1369170:intron 45.0%
! AAGCTTGCCATTTGGGATAC+TGG + tig0018755:123063-123082 Msa1369170:CDS 45.0%
GGATTTGGATCCCTTAAGCA+TGG - tig0018755:123295-123314 None:intergenic 45.0%
ACCAAATAATGCAGCTGGTC+AGG + tig0018755:123438-123457 Msa1369170:intron 45.0%
TCCTGACCAGCTGCATTATT+TGG - tig0018755:123442-123461 None:intergenic 45.0%
ATCACGGTCATCAATACTCG+AGG - tig0018755:123595-123614 None:intergenic 45.0%
!!! GTCATTTTTCTGACCTCTGC+TGG + tig0018755:123818-123837 Msa1369170:intron 45.0%
GTAGGATTCAATGGCCAAGT+TGG + tig0018755:124032-124051 Msa1369170:intron 45.0%
GACTGCATGAAGATGCTTGT+TGG + tig0018755:124316-124335 Msa1369170:CDS 45.0%
AAACTCCTGCAGAAACATGC+TGG - tig0018755:124799-124818 None:intergenic 45.0%
AGCATGATTGCTTATCCCTC+CGG + tig0018755:124910-124929 Msa1369170:intron 45.0%
!!! GAGGAAAGTGCTTTTGCTTC+TGG + tig0018755:124974-124993 Msa1369170:intron 45.0%
AGCATGATTGCTTATCCCTC+CGG + tig0018755:124910-124929 Msa1369170:intron 45.0%
AGATGAGCCTGTGCAATTTC+GGG + tig0018755:125616-125635 Msa1369170:intron 45.0%
! AACAATGGCTGATGGTGACT+GGG + tig0018755:125722-125741 Msa1369170:intron 45.0%
! TTTTACTCCCTTAGAGCCCT+CGG - tig0018755:125800-125819 None:intergenic 45.0%
GAATCATGGTCTCCAAGAGA+AGG + tig0018755:125906-125925 Msa1369170:three_prime_UTR 45.0%
!! GGGCATTGCATCCATTTTCA+TGG + tig0018755:125927-125946 Msa1369170:three_prime_UTR 45.0%
CACTCAGAGCACATCTTTAC+AGG - tig0018755:126126-126145 None:intergenic 45.0%
GATCGCCGACCCACTAATAT+TGG + tig0018755:122585-122604 Msa1369170:five_prime_UTR 50.0%
GATGATCTCTCTCCCACCAT+TGG + tig0018755:122904-122923 Msa1369170:CDS 50.0%
TCTTACTACAGAGGGGCTCA+AGG + tig0018755:123484-123503 Msa1369170:CDS 50.0%
AGGGGCTCAAGGAATCATCA+TGG + tig0018755:123495-123514 Msa1369170:CDS 50.0%
GGGGCTCAAGGAATCATCAT+GGG + tig0018755:123496-123515 Msa1369170:CDS 50.0%
TCAGCAAACATTCCCAGCAG+AGG - tig0018755:123834-123853 None:intergenic 50.0%
TCGCAGATCGCGGAAAATAG+CGG + tig0018755:124586-124605 Msa1369170:intron 50.0%
!! AGAGAGTACTGCAGAGAAGG+AGG + tig0018755:124640-124659 Msa1369170:intron 50.0%
!! GAGAGTACTGCAGAGAAGGA+GGG + tig0018755:124641-124660 Msa1369170:intron 50.0%
! GGTTACCAGCATGTTTCTGC+AGG + tig0018755:124791-124810 Msa1369170:intron 50.0%
AGCCTGTGCAATTTCGGGAA+AGG + tig0018755:125621-125640 Msa1369170:intron 50.0%
CTCCTTTCCCGAAATTGCAC+AGG - tig0018755:125626-125645 None:intergenic 50.0%
! GAACAATGGCTGATGGTGAC+TGG + tig0018755:125721-125740 Msa1369170:intron 50.0%
! ACAATGGCTGATGGTGACTG+GGG + tig0018755:125723-125742 Msa1369170:intron 50.0%
!! TACACCTAGCCTTTTAGCCG+AGG + tig0018755:125780-125799 Msa1369170:CDS 50.0%
!! ACACCTAGCCTTTTAGCCGA+GGG + tig0018755:125781-125800 Msa1369170:CDS 50.0%
!! CTTTTAGCCGAGGGCTCTAA+GGG + tig0018755:125790-125809 Msa1369170:CDS 50.0%
ATAGCTTCAGCAACAACCGC+TGG - tig0018755:125863-125882 None:intergenic 50.0%
TGGATGCAATGCCCTTCTCT+TGG - tig0018755:125921-125940 None:intergenic 50.0%
TTGTGGGAGGGGATGCTTGT+TGG + tig0018755:122520-122539 Msa1369170:five_prime_UTR 55.0%
TACTGCAGAGAAGGAGGGTG+AGG + tig0018755:124646-124665 Msa1369170:intron 55.0%
CCTTAGAGCCCTCGGCTAAA+AGG - tig0018755:125792-125811 None:intergenic 55.0%
! CCTTTTAGCCGAGGGCTCTA+AGG + tig0018755:125789-125808 Msa1369170:CDS 55.0%
! CTGGTGGATGCATCAGACTG+AGG - tig0018755:125844-125863 None:intergenic 55.0%
CAGTCTGATGCATCCACCAG+CGG + tig0018755:125844-125863 Msa1369170:CDS 55.0%
GAGCCCTCGGCTAAAAGGCT+AGG - tig0018755:125787-125806 None:intergenic 60.0%
GCTTCAGCAACAACCGCTGG+TGG - tig0018755:125860-125879 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0018755 gene 122499 126298 122499 ID=Msa1369170;Name=Msa1369170
tig0018755 mRNA 122499 126298 122499 ID=Msa1369170-mRNA-1;Parent=Msa1369170;Name=Msa1369170-mRNA-1;_AED=0.24;_eAED=0.24;_QI=183|0.71|0.75|1|0.42|0.5|8|422|251
tig0018755 exon 122499 122672 122499 ID=Msa1369170-mRNA-1:exon:1004;Parent=Msa1369170-mRNA-1
tig0018755 exon 122781 122925 122781 ID=Msa1369170-mRNA-1:exon:1005;Parent=Msa1369170-mRNA-1
tig0018755 exon 123016 123084 123016 ID=Msa1369170-mRNA-1:exon:1006;Parent=Msa1369170-mRNA-1
tig0018755 exon 123452 123521 123452 ID=Msa1369170-mRNA-1:exon:1007;Parent=Msa1369170-mRNA-1
tig0018755 exon 124036 124160 124036 ID=Msa1369170-mRNA-1:exon:1008;Parent=Msa1369170-mRNA-1
tig0018755 exon 124233 124354 124233 ID=Msa1369170-mRNA-1:exon:1009;Parent=Msa1369170-mRNA-1
tig0018755 exon 125369 125497 125369 ID=Msa1369170-mRNA-1:exon:1010;Parent=Msa1369170-mRNA-1
tig0018755 exon 125772 126298 125772 ID=Msa1369170-mRNA-1:exon:1011;Parent=Msa1369170-mRNA-1
tig0018755 five_prime_UTR 122499 122672 122499 ID=Msa1369170-mRNA-1:five_prime_utr;Parent=Msa1369170-mRNA-1
tig0018755 five_prime_UTR 122781 122789 122781 ID=Msa1369170-mRNA-1:five_prime_utr;Parent=Msa1369170-mRNA-1
tig0018755 CDS 122790 122925 122790 ID=Msa1369170-mRNA-1:cds;Parent=Msa1369170-mRNA-1
tig0018755 CDS 123016 123084 123016 ID=Msa1369170-mRNA-1:cds;Parent=Msa1369170-mRNA-1
tig0018755 CDS 123452 123521 123452 ID=Msa1369170-mRNA-1:cds;Parent=Msa1369170-mRNA-1
tig0018755 CDS 124036 124160 124036 ID=Msa1369170-mRNA-1:cds;Parent=Msa1369170-mRNA-1
tig0018755 CDS 124233 124354 124233 ID=Msa1369170-mRNA-1:cds;Parent=Msa1369170-mRNA-1
tig0018755 CDS 125369 125497 125369 ID=Msa1369170-mRNA-1:cds;Parent=Msa1369170-mRNA-1
tig0018755 CDS 125772 125876 125772 ID=Msa1369170-mRNA-1:cds;Parent=Msa1369170-mRNA-1
tig0018755 three_prime_UTR 125877 126298 125877 ID=Msa1369170-mRNA-1:three_prime_utr;Parent=Msa1369170-mRNA-1
Gene Sequence

>Msa1369170

ATGGATTCGAGTTCAGGGCAGCAAGAATTCGATTATATGTTCAAATTGTTAATGATTGGGGATTCTGGTGTTGGCAAAAGTAGTCTTCTTCTCAGATTCACCTCAGATGATTTTGATGATCTCTCTCCCACCATTGGTGTTGATTTTAAGGTCAAATATGTCACGATAGAGGGTAAAAAGCTTAAGCTTGCCATTTGGGATACTGCTGGTCAGGAGAGATTTAGAACACTGACAAGTTCTTACTACAGAGGGGCTCAAGGAATCATCATGGGCAAGATTCAATGGCCAAGTTGGACTTTCTTTGTTAGTGATGGGGTTCCCTGCCAAAATGACTGCAATATTTGTATTAGATGCAATCTGTTTAATGATCTTTGGAGTTGGGAGATGTCCTTTTCTTTAATTTATGACGTAACACGGCGAGAAACATTTACAAATCTCTCTGAAATATGGGCAAAGGAAATAGACCTTTATTCAACAAATCAAGACTGCATGAAGATGCTTGTTGGAAACAAAGTAGATAAGGAGGGTGATAGAGTTGTGACAAAGAAAGAGGGAATAGACTTTGCTAGGGAATATGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGAGTAAATGTGCAGCAATGCTTTGAAGAGCTTGTTTTGAAGGTTCTTGATACACCTAGCCTTTTAGCCGAGGGCTCTAAGGGAGTAAAAAAGAACATTTTTAAGGACAAACCTCAGTCTGATGCATCCACCAGCGGTTGTTGCTGA
Protein sequence

>Msa1369170

MDSSSGQQEFDYMFKLLMIGDSGVGKSSLLLRFTSDDFDDLSPTIGVDFKVKYVTIEGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMGKIQWPSWTFFVSDGVPCQNDCNICIRCNLFNDLWSWEMSFSLIYDVTRRETFTNLSEIWAKEIDLYSTNQDCMKMLVGNKVDKEGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKVLDTPSLLAEGSKGVKKNIFKDKPQSDASTSGCC*