Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370870 | XP_003591526.3 | 93.401 | 197 | 13 | 0 | 1 | 197 | 1 | 197 | 1.54e-131 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370870 | sp|O22244|PMEI6_ARATH | 47.826 | 161 | 81 | 2 | 33 | 191 | 49 | 208 | 6.22e-37 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370870 | A0A396JYB9 | 93.401 | 197 | 13 | 0 | 1 | 197 | 1 | 197 | 7.36e-132 | 377 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008330 | Msa1370870 | 0.804481 | 2.115798e-49 | -8.615850e-47 |
| Msa0062750 | Msa1370870 | 0.808919 | 2.444165e-50 | -8.615850e-47 |
| Msa0103060 | Msa1370870 | 0.804859 | 1.764335e-49 | -8.615850e-47 |
| Msa1349360 | Msa1370870 | 0.823637 | 1.244374e-53 | -8.615850e-47 |
| Msa1366620 | Msa1370870 | 0.854828 | 9.488855e-62 | -8.615850e-47 |
| Msa1370870 | Msa1379070 | 0.806366 | 8.517178e-50 | -8.615850e-47 |
| Msa1370870 | Msa1379090 | 0.807849 | 4.133897e-50 | -8.615850e-47 |
| Msa1370870 | Msa1384980 | 0.802675 | 5.014153e-49 | -8.615850e-47 |
| Msa1370870 | Msa1435470 | 0.817192 | 3.745024e-52 | -8.615850e-47 |
| Msa0607280 | Msa1370870 | 0.815788 | 7.727536e-52 | -8.615850e-47 |
| Msa0615850 | Msa1370870 | 0.811988 | 5.315002e-51 | -8.615850e-47 |
| Msa0622390 | Msa1370870 | 0.808812 | 2.576955e-50 | -8.615850e-47 |
| Msa0626890 | Msa1370870 | 0.807448 | 5.029251e-50 | -8.615850e-47 |
| Msa0646390 | Msa1370870 | 0.804107 | 2.532272e-49 | -8.615850e-47 |
| Msa0690720 | Msa1370870 | 0.823696 | 1.205156e-53 | -8.615850e-47 |
| Msa0698900 | Msa1370870 | 0.818489 | 1.908600e-52 | -8.615850e-47 |
| Msa0739610 | Msa1370870 | 0.802712 | 4.926526e-49 | -8.615850e-47 |
| Msa0194570 | Msa1370870 | 0.808059 | 3.730365e-50 | -8.615850e-47 |
| Msa1226600 | Msa1370870 | 0.802489 | 5.475946e-49 | -8.615850e-47 |
| Msa1316720 | Msa1370870 | 0.811446 | 6.971525e-51 | -8.615850e-47 |
| Msa0393140 | Msa1370870 | 0.801444 | 8.978866e-49 | -8.615850e-47 |
| Msa0423110 | Msa1370870 | 0.817625 | 2.992518e-52 | -8.615850e-47 |
| Msa0427050 | Msa1370870 | 0.801787 | 7.636933e-49 | -8.615850e-47 |
| Msa0458110 | Msa1370870 | 0.800572 | 1.353226e-48 | -8.615850e-47 |
| Msa0283670 | Msa1370870 | 0.801121 | 1.045528e-48 | -8.615850e-47 |
| Msa1183730 | Msa1370870 | 0.804708 | 1.897338e-49 | -8.615850e-47 |
| Msa1195860 | Msa1370870 | 0.804143 | 2.488814e-49 | -8.615850e-47 |
| Msa0505390 | Msa1370870 | 0.800559 | 1.361835e-48 | -8.615850e-47 |
| Msa0553520 | Msa1370870 | 0.832264 | 1.044085e-55 | -8.615850e-47 |
| Msa0887000 | Msa1370870 | 0.809669 | 1.687960e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370870 | MtrunA17_Chr1g0195561 | 93.401 | 197 | 13 | 0 | 1 | 197 | 1 | 197 | 1.42e-135 | 377 |
| Msa1370870 | MtrunA17_Chr7g0269361 | 68.927 | 177 | 53 | 1 | 22 | 196 | 21 | 197 | 4.93e-88 | 257 |
| Msa1370870 | MtrunA17_Chr4g0067891 | 35.437 | 206 | 118 | 4 | 1 | 191 | 1 | 206 | 7.01e-36 | 124 |
| Msa1370870 | MtrunA17_Chr4g0018251 | 35.789 | 190 | 105 | 3 | 11 | 189 | 12 | 195 | 4.04e-34 | 120 |
| Msa1370870 | MtrunA17_Chr8g0391341 | 34.419 | 215 | 117 | 5 | 1 | 191 | 1 | 215 | 9.17e-34 | 119 |
| Msa1370870 | MtrunA17_Chr4g0018281 | 34.715 | 193 | 109 | 3 | 8 | 189 | 9 | 195 | 1.02e-33 | 119 |
| Msa1370870 | MtrunA17_Chr4g0018241 | 34.715 | 193 | 109 | 3 | 8 | 189 | 9 | 195 | 1.03e-32 | 116 |
| Msa1370870 | MtrunA17_Chr3g0079401 | 32.500 | 160 | 104 | 2 | 33 | 188 | 26 | 185 | 2.51e-29 | 107 |
| Msa1370870 | MtrunA17_Chr2g0301381 | 39.181 | 171 | 92 | 4 | 27 | 192 | 29 | 192 | 9.57e-29 | 106 |
| Msa1370870 | MtrunA17_Chr5g0398871 | 31.351 | 185 | 119 | 3 | 10 | 189 | 29 | 210 | 7.14e-28 | 104 |
| Msa1370870 | MtrunA17_Chr3g0079381 | 30.625 | 160 | 107 | 2 | 33 | 188 | 25 | 184 | 1.63e-27 | 102 |
| Msa1370870 | MtrunA17_Chr4g0070161 | 30.159 | 189 | 120 | 5 | 7 | 186 | 11 | 196 | 3.60e-22 | 89.4 |
| Msa1370870 | MtrunA17_Chr4g0056601 | 26.000 | 200 | 136 | 4 | 1 | 188 | 1 | 200 | 8.61e-21 | 85.5 |
| Msa1370870 | MtrunA17_Chr4g0011711 | 32.558 | 172 | 95 | 5 | 33 | 188 | 33 | 199 | 6.23e-20 | 83.6 |
| Msa1370870 | MtrunA17_Chr4g0011701 | 32.558 | 172 | 95 | 5 | 33 | 188 | 33 | 199 | 9.89e-20 | 83.2 |
| Msa1370870 | MtrunA17_Chr4g0011681 | 31.156 | 199 | 113 | 7 | 8 | 188 | 7 | 199 | 1.93e-19 | 82.4 |
| Msa1370870 | MtrunA17_Chr4g0011721 | 29.000 | 200 | 119 | 6 | 5 | 188 | 7 | 199 | 6.46e-18 | 78.2 |
| Msa1370870 | MtrunA17_Chr3g0079371 | 26.415 | 159 | 110 | 4 | 33 | 185 | 67 | 224 | 1.26e-16 | 75.1 |
| Msa1370870 | MtrunA17_Chr7g0230391 | 28.736 | 174 | 104 | 5 | 28 | 184 | 39 | 209 | 5.02e-16 | 73.6 |
| Msa1370870 | MtrunA17_Chr3g0092681 | 28.652 | 178 | 115 | 5 | 8 | 183 | 54 | 221 | 1.11e-14 | 69.7 |
| Msa1370870 | MtrunA17_Chr4g0018231 | 28.750 | 160 | 108 | 3 | 33 | 187 | 44 | 202 | 3.19e-14 | 68.2 |
| Msa1370870 | MtrunA17_Chr8g0345211 | 28.571 | 161 | 104 | 3 | 32 | 186 | 76 | 231 | 8.41e-14 | 68.9 |
| Msa1370870 | MtrunA17_Chr7g0272141 | 26.943 | 193 | 124 | 5 | 8 | 186 | 5 | 194 | 1.56e-13 | 68.2 |
| Msa1370870 | MtrunA17_Chr4g0067611 | 26.875 | 160 | 113 | 2 | 28 | 187 | 54 | 209 | 1.89e-13 | 68.2 |
| Msa1370870 | MtrunA17_Chr8g0345281 | 30.818 | 159 | 105 | 3 | 33 | 186 | 68 | 226 | 2.12e-13 | 67.8 |
| Msa1370870 | MtrunA17_Chr1g0147051 | 27.746 | 173 | 112 | 3 | 22 | 182 | 71 | 242 | 1.15e-12 | 65.9 |
| Msa1370870 | MtrunA17_Chr1g0192311 | 27.950 | 161 | 108 | 3 | 33 | 189 | 58 | 214 | 1.17e-12 | 65.9 |
| Msa1370870 | MtrunA17_Chr1g0192281 | 27.950 | 161 | 108 | 3 | 33 | 189 | 58 | 214 | 1.17e-12 | 65.9 |
| Msa1370870 | MtrunA17_Chr4g0069891 | 36.170 | 94 | 58 | 1 | 95 | 188 | 142 | 233 | 7.96e-12 | 63.5 |
| Msa1370870 | MtrunA17_Chr7g0272151 | 24.204 | 157 | 117 | 2 | 33 | 189 | 59 | 213 | 1.46e-11 | 62.8 |
| Msa1370870 | MtrunA17_Chr4g0067601 | 26.875 | 160 | 113 | 1 | 28 | 187 | 54 | 209 | 2.06e-11 | 62.0 |
| Msa1370870 | MtrunA17_Chr8g0354901 | 26.667 | 165 | 110 | 4 | 33 | 189 | 76 | 237 | 2.38e-11 | 62.0 |
| Msa1370870 | MtrunA17_Chr2g0295531 | 25.301 | 166 | 108 | 4 | 28 | 186 | 38 | 194 | 5.00e-11 | 61.2 |
| Msa1370870 | MtrunA17_Chr4g0000121 | 26.543 | 162 | 109 | 4 | 33 | 189 | 45 | 201 | 6.04e-11 | 60.8 |
| Msa1370870 | MtrunA17_Chr1g0192301 | 26.543 | 162 | 109 | 4 | 33 | 189 | 63 | 219 | 8.56e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370870 | AT3G62820.1 | 47.619 | 189 | 95 | 2 | 6 | 191 | 7 | 194 | 2.18e-56 | 177 |
| Msa1370870 | AT2G47670.1 | 47.826 | 161 | 81 | 2 | 33 | 191 | 49 | 208 | 6.32e-38 | 130 |
| Msa1370870 | AT5G20740.1 | 35.979 | 189 | 112 | 3 | 10 | 189 | 8 | 196 | 7.04e-31 | 112 |
| Msa1370870 | AT4G12390.1 | 38.365 | 159 | 91 | 2 | 36 | 187 | 43 | 201 | 1.33e-30 | 111 |
| Msa1370870 | AT5G20740.2 | 35.979 | 189 | 112 | 3 | 10 | 189 | 42 | 230 | 2.10e-30 | 112 |
| Msa1370870 | AT5G62350.1 | 34.969 | 163 | 100 | 2 | 33 | 189 | 39 | 201 | 2.66e-30 | 110 |
| Msa1370870 | AT5G62360.1 | 36.076 | 158 | 98 | 2 | 33 | 188 | 44 | 200 | 3.31e-30 | 110 |
| Msa1370870 | AT1G62760.1 | 33.951 | 162 | 104 | 1 | 31 | 189 | 146 | 307 | 4.02e-29 | 110 |
| Msa1370870 | AT1G14890.1 | 32.990 | 194 | 112 | 4 | 10 | 190 | 30 | 218 | 2.56e-28 | 105 |
| Msa1370870 | AT4G25260.1 | 30.769 | 195 | 119 | 5 | 10 | 188 | 5 | 199 | 8.32e-28 | 104 |
| Msa1370870 | AT2G01610.1 | 35.000 | 180 | 95 | 4 | 31 | 190 | 43 | 220 | 1.93e-27 | 103 |
| Msa1370870 | AT3G47380.1 | 35.404 | 161 | 98 | 2 | 33 | 187 | 39 | 199 | 4.61e-27 | 102 |
| Msa1370870 | AT1G70720.1 | 33.505 | 194 | 115 | 4 | 8 | 191 | 9 | 198 | 5.05e-25 | 97.1 |
| Msa1370870 | AT1G70720.2 | 33.505 | 194 | 115 | 4 | 8 | 191 | 21 | 210 | 5.32e-25 | 97.4 |
| Msa1370870 | AT1G23205.1 | 34.737 | 190 | 111 | 4 | 8 | 185 | 10 | 198 | 2.01e-24 | 95.5 |
| Msa1370870 | AT1G62770.1 | 31.875 | 160 | 101 | 4 | 36 | 187 | 37 | 196 | 2.14e-24 | 95.5 |
| Msa1370870 | AT4G25250.1 | 31.013 | 158 | 100 | 4 | 33 | 183 | 38 | 193 | 8.67e-19 | 80.5 |
| Msa1370870 | AT3G14310.1 | 33.333 | 168 | 106 | 4 | 33 | 195 | 59 | 225 | 7.99e-18 | 81.3 |
| Msa1370870 | AT5G51520.1 | 24.752 | 202 | 132 | 5 | 5 | 186 | 1 | 202 | 1.84e-16 | 74.7 |
| Msa1370870 | AT4G00080.1 | 30.120 | 166 | 104 | 5 | 30 | 184 | 33 | 197 | 6.41e-15 | 70.5 |
| Msa1370870 | AT1G53840.1 | 28.571 | 175 | 110 | 5 | 32 | 196 | 72 | 241 | 4.71e-14 | 70.1 |
| Msa1370870 | AT3G05610.1 | 26.452 | 155 | 112 | 2 | 33 | 187 | 58 | 210 | 8.14e-14 | 69.7 |
| Msa1370870 | AT1G53830.1 | 29.940 | 167 | 113 | 3 | 33 | 195 | 62 | 228 | 9.81e-14 | 69.3 |
| Msa1370870 | AT5G04960.1 | 30.120 | 166 | 99 | 4 | 32 | 196 | 67 | 216 | 1.87e-13 | 68.6 |
| Msa1370870 | AT4G15980.1 | 27.152 | 151 | 106 | 2 | 37 | 186 | 52 | 199 | 7.63e-13 | 66.6 |
| Msa1370870 | AT4G15980.2 | 27.152 | 151 | 106 | 2 | 37 | 186 | 62 | 209 | 8.82e-13 | 66.6 |
| Msa1370870 | AT5G27870.1 | 26.061 | 165 | 119 | 3 | 33 | 197 | 57 | 218 | 1.78e-12 | 65.9 |
| Msa1370870 | AT3G49220.2 | 33.077 | 130 | 80 | 3 | 28 | 156 | 127 | 250 | 1.12e-11 | 63.2 |
| Msa1370870 | AT3G14300.1 | 26.347 | 167 | 111 | 4 | 32 | 187 | 270 | 435 | 1.20e-11 | 63.5 |
| Msa1370870 | AT5G49180.1 | 27.564 | 156 | 111 | 2 | 33 | 187 | 55 | 209 | 2.32e-11 | 62.4 |
| Msa1370870 | AT3G49220.3 | 33.077 | 130 | 80 | 3 | 28 | 156 | 127 | 250 | 2.41e-11 | 62.4 |
| Msa1370870 | AT3G49220.1 | 33.077 | 130 | 80 | 3 | 28 | 156 | 82 | 205 | 3.60e-11 | 62.0 |
| Msa1370870 | AT3G05620.1 | 25.434 | 173 | 112 | 4 | 30 | 186 | 30 | 201 | 5.79e-11 | 61.2 |
Find 37 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAGAGCTAGAGCGTTAC+TGG | 0.280918 | tig0019143:-166464 | None:intergenic |
| GATCAAGATACTTGCCTTGA+TGG | 0.282001 | tig0019143:+166373 | Msa1370870:CDS |
| CTGCACTTATCCATGTATTA+AGG | 0.338152 | tig0019143:-166342 | None:intergenic |
| AGCGTTACTGGTTATATAAT+AGG | 0.353010 | tig0019143:-166452 | None:intergenic |
| ACTTGCCTTGATGGATTTCA+AGG | 0.400968 | tig0019143:+166382 | Msa1370870:CDS |
| CAGCCCTTGCCCACTTGCTA+GGG | 0.415413 | tig0019143:-166117 | None:intergenic |
| AGTCAGTTGGTATTTGCAAA+AGG | 0.416317 | tig0019143:+166001 | Msa1370870:CDS |
| ACTAGACACGGGCATTTAAG+AGG | 0.436602 | tig0019143:+166196 | Msa1370870:CDS |
| CCTAGCAAGTGGGCAAGGGC+TGG | 0.454457 | tig0019143:+166118 | Msa1370870:CDS |
| GTTAATAAACTTGCCACTAC+AGG | 0.455754 | tig0019143:+166484 | Msa1370870:CDS |
| ACCAACTGACTTGCAAGGTA+TGG | 0.470021 | tig0019143:-165989 | None:intergenic |
| TTAAGTTTGCGAGATATGCT+TGG | 0.470762 | tig0019143:-166174 | None:intergenic |
| AGGCTAAGTAGAACGACATT+TGG | 0.472627 | tig0019143:+166304 | Msa1370870:CDS |
| ACGACATTTGGTACCCAGAT+GGG | 0.493858 | tig0019143:+166316 | Msa1370870:CDS |
| GAAGCCCTAGCAAGTGGGCA+AGG | 0.500888 | tig0019143:+166113 | Msa1370870:CDS |
| GTCAGTTGGTATTTGCAAAA+GGG | 0.511286 | tig0019143:+166002 | Msa1370870:CDS |
| CTCGCAAACTTAACTAGACA+CGG | 0.515036 | tig0019143:+166184 | Msa1370870:CDS |
| GAGAAGCTTGCAAAGTAACT+AGG | 0.515953 | tig0019143:+166038 | Msa1370870:CDS |
| TCCATACCTTGCAAGTCAGT+TGG | 0.518339 | tig0019143:+165988 | Msa1370870:CDS |
| AAACTTGCCACTACAGGTCT+AGG | 0.519005 | tig0019143:+166490 | Msa1370870:CDS |
| GCACCGTTCTCTAACAGTGC+TGG | 0.521547 | tig0019143:+166088 | Msa1370870:CDS |
| GTGATCTATGAAGCTCATCA+AGG | 0.523992 | tig0019143:-166267 | None:intergenic |
| GATCACTGAATGTGCTCAGA+AGG | 0.546424 | tig0019143:+166284 | Msa1370870:CDS |
| GCTGGAGTGTCAGTGACAAT+CGG | 0.557488 | tig0019143:+166136 | Msa1370870:CDS |
| CAAATACCAACTGACTTGCA+AGG | 0.559475 | tig0019143:-165994 | None:intergenic |
| AACGACATTTGGTACCCAGA+TGG | 0.584170 | tig0019143:+166315 | Msa1370870:CDS |
| CGACATTTGGTACCCAGATG+GGG | 0.585386 | tig0019143:+166317 | Msa1370870:CDS |
| TGATCTATGAAGCTCATCAA+GGG | 0.595202 | tig0019143:-166266 | None:intergenic |
| CTGGAAGAAGCCCTAGCAAG+TGG | 0.599584 | tig0019143:+166107 | Msa1370870:CDS |
| CTTCCAGCACTGTTAGAGAA+CGG | 0.607318 | tig0019143:-166091 | None:intergenic |
| AAGCCCTAGCAAGTGGGCAA+GGG | 0.611205 | tig0019143:+166114 | Msa1370870:CDS |
| GATGCTTCCTAGACCTGTAG+TGG | 0.614161 | tig0019143:-166497 | None:intergenic |
| GTGCTAGCGAGCGCGTACAA+AGG | 0.625584 | tig0019143:-166069 | None:intergenic |
| TAAATGCAAGCAGAAAGGTA+AGG | 0.639842 | tig0019143:-165958 | None:intergenic |
| GACATTTGGTACCCAGATGG+GGG | 0.662357 | tig0019143:+166318 | Msa1370870:CDS |
| TGGAAGAAGCCCTAGCAAGT+GGG | 0.667217 | tig0019143:+166108 | Msa1370870:CDS |
| TCGCAAACTTAACTAGACAC+GGG | 0.670532 | tig0019143:+166185 | Msa1370870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAAATAAATGCAAGCAGAA+AGG | - | tig0019143:165966-165985 | None:intergenic | 25.0% |
| ! | AGCGTTACTGGTTATATAAT+AGG | - | tig0019143:166455-166474 | None:intergenic | 30.0% |
| TAAATGCAAGCAGAAAGGTA+AGG | - | tig0019143:165961-165980 | None:intergenic | 35.0% | |
| ! | AGTCAGTTGGTATTTGCAAA+AGG | + | tig0019143:166001-166020 | Msa1370870:CDS | 35.0% |
| ! | GTCAGTTGGTATTTGCAAAA+GGG | + | tig0019143:166002-166021 | Msa1370870:CDS | 35.0% |
| TTAAGTTTGCGAGATATGCT+TGG | - | tig0019143:166177-166196 | None:intergenic | 35.0% | |
| TGATCTATGAAGCTCATCAA+GGG | - | tig0019143:166269-166288 | None:intergenic | 35.0% | |
| CTGCACTTATCCATGTATTA+AGG | - | tig0019143:166345-166364 | None:intergenic | 35.0% | |
| ! | TTTTGCCTTGAAATCCATCA+AGG | - | tig0019143:166390-166409 | None:intergenic | 35.0% |
| ! | GATGGATTTCAAGGCAAAAA+CGG | + | tig0019143:166391-166410 | Msa1370870:CDS | 35.0% |
| GTTAATAAACTTGCCACTAC+AGG | + | tig0019143:166484-166503 | Msa1370870:CDS | 35.0% | |
| !! | CAAATACCAACTGACTTGCA+AGG | - | tig0019143:165997-166016 | None:intergenic | 40.0% |
| GAGAAGCTTGCAAAGTAACT+AGG | + | tig0019143:166038-166057 | Msa1370870:CDS | 40.0% | |
| CTCGCAAACTTAACTAGACA+CGG | + | tig0019143:166184-166203 | Msa1370870:CDS | 40.0% | |
| TCGCAAACTTAACTAGACAC+GGG | + | tig0019143:166185-166204 | Msa1370870:CDS | 40.0% | |
| GTGATCTATGAAGCTCATCA+AGG | - | tig0019143:166270-166289 | None:intergenic | 40.0% | |
| AGGCTAAGTAGAACGACATT+TGG | + | tig0019143:166304-166323 | Msa1370870:CDS | 40.0% | |
| GATCAAGATACTTGCCTTGA+TGG | + | tig0019143:166373-166392 | Msa1370870:CDS | 40.0% | |
| !! | ACTTGCCTTGATGGATTTCA+AGG | + | tig0019143:166382-166401 | Msa1370870:CDS | 40.0% |
| GATTTCAAGGCAAAAACGGT+AGG | + | tig0019143:166395-166414 | Msa1370870:CDS | 40.0% | |
| TCCATACCTTGCAAGTCAGT+TGG | + | tig0019143:165988-166007 | Msa1370870:CDS | 45.0% | |
| !! | ACCAACTGACTTGCAAGGTA+TGG | - | tig0019143:165992-166011 | None:intergenic | 45.0% |
| CTTCCAGCACTGTTAGAGAA+CGG | - | tig0019143:166094-166113 | None:intergenic | 45.0% | |
| ACTAGACACGGGCATTTAAG+AGG | + | tig0019143:166196-166215 | Msa1370870:CDS | 45.0% | |
| GATCACTGAATGTGCTCAGA+AGG | + | tig0019143:166284-166303 | Msa1370870:CDS | 45.0% | |
| AACGACATTTGGTACCCAGA+TGG | + | tig0019143:166315-166334 | Msa1370870:CDS | 45.0% | |
| ACGACATTTGGTACCCAGAT+GGG | + | tig0019143:166316-166335 | Msa1370870:CDS | 45.0% | |
| TGTATTAAGGTCCCCCATCT+GGG | - | tig0019143:166332-166351 | None:intergenic | 45.0% | |
| ATGTATTAAGGTCCCCCATC+TGG | - | tig0019143:166333-166352 | None:intergenic | 45.0% | |
| AGATGGGGGACCTTAATACA+TGG | + | tig0019143:166332-166351 | Msa1370870:CDS | 45.0% | |
| ! | AACAAGAGCTAGAGCGTTAC+TGG | - | tig0019143:166467-166486 | None:intergenic | 45.0% |
| AAACTTGCCACTACAGGTCT+AGG | + | tig0019143:166490-166509 | Msa1370870:CDS | 45.0% | |
| TGGAAGAAGCCCTAGCAAGT+GGG | + | tig0019143:166108-166127 | Msa1370870:CDS | 50.0% | |
| ! | GCTGGAGTGTCAGTGACAAT+CGG | + | tig0019143:166136-166155 | Msa1370870:CDS | 50.0% |
| CGACATTTGGTACCCAGATG+GGG | + | tig0019143:166317-166336 | Msa1370870:CDS | 50.0% | |
| GACATTTGGTACCCAGATGG+GGG | + | tig0019143:166318-166337 | Msa1370870:CDS | 50.0% | |
| GATGCTTCCTAGACCTGTAG+TGG | - | tig0019143:166500-166519 | None:intergenic | 50.0% | |
| GCACCGTTCTCTAACAGTGC+TGG | + | tig0019143:166088-166107 | Msa1370870:CDS | 55.0% | |
| CTGGAAGAAGCCCTAGCAAG+TGG | + | tig0019143:166107-166126 | Msa1370870:CDS | 55.0% | |
| AAGCCCTAGCAAGTGGGCAA+GGG | + | tig0019143:166114-166133 | Msa1370870:CDS | 55.0% | |
| GTGCTAGCGAGCGCGTACAA+AGG | - | tig0019143:166072-166091 | None:intergenic | 60.0% | |
| GAAGCCCTAGCAAGTGGGCA+AGG | + | tig0019143:166113-166132 | Msa1370870:CDS | 60.0% | |
| ! | CAGCCCTTGCCCACTTGCTA+GGG | - | tig0019143:166120-166139 | None:intergenic | 60.0% |
| CCAGCCCTTGCCCACTTGCT+AGG | - | tig0019143:166121-166140 | None:intergenic | 65.0% | |
| CCTAGCAAGTGGGCAAGGGC+TGG | + | tig0019143:166118-166137 | Msa1370870:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019143 | gene | 165938 | 166531 | 165938 | ID=Msa1370870;Name=Msa1370870 |
| tig0019143 | mRNA | 165938 | 166531 | 165938 | ID=Msa1370870-mRNA-1;Parent=Msa1370870;Name=Msa1370870-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|197 |
| tig0019143 | exon | 165938 | 166531 | 165938 | ID=Msa1370870-mRNA-1:exon:1786;Parent=Msa1370870-mRNA-1 |
| tig0019143 | CDS | 165938 | 166531 | 165938 | ID=Msa1370870-mRNA-1:cds;Parent=Msa1370870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
