AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0393140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0393140 MtrunA17_Chr3g0078481 87.532 385 19 3 1 358 1 383 0.0 648
Msa0393140 MtrunA17_Chr3g0114921 57.796 372 125 6 11 353 75 443 4.17e-137 397
Msa0393140 MtrunA17_Chr3g0114931 57.558 344 110 8 41 355 103 439 3.70e-113 336
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0393140 AT2G41705.3 52.617 363 128 7 20 353 109 456 3.43e-106 319
Msa0393140 AT2G41705.2 52.617 363 128 7 20 353 109 456 3.43e-106 319
Msa0393140 AT2G41705.4 52.617 363 128 7 20 353 109 456 3.43e-106 319
Msa0393140 AT2G41705.1 52.617 363 128 7 20 353 109 456 3.43e-106 319

Find 84 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAGAATTGCCAAAGTTAT+TGG 0.149331 3_2:+7177988 Msa0393140:CDS
TAATATACTGTGTGCCTATT+TGG 0.173856 3_2:+7181331 Msa0393140:CDS
TATACTCTGGACAAGTTATT+TGG 0.190006 3_2:+7178825 Msa0393140:CDS
GACATACATATCACATTAAA+TGG 0.216183 3_2:+7177573 Msa0393140:exon
GAGAATGGATGAATTATAAA+TGG 0.245737 3_2:+7181353 Msa0393140:exon
GTTTCAAGTGGCTTCTTATA+AGG 0.259265 3_2:+7180147 Msa0393140:CDS
AATTCATCCATTCTCCAAAT+AGG 0.275234 3_2:-7181345 None:intergenic
TGCTTCATATTTGATTCATT+TGG 0.285021 3_2:+7178015 Msa0393140:CDS
GATCAAGAGGTTTGTTGAAT+TGG 0.285501 3_2:+7180420 Msa0393140:CDS
ATGCTTGAACTCAGTGTTAC+TGG 0.290373 3_2:+7179414 Msa0393140:CDS
TTCCACCTTTGCCTTGGTCT+TGG 0.290430 3_2:-7180204 None:intergenic
CCTTGACCTTCCTTCTAATA+TGG 0.294484 3_2:+7178890 Msa0393140:CDS
AATTACAGTTTGTTTAAATT+CGG 0.322113 3_2:-7181532 None:intergenic
CTAATCCATGTCCATTTAAT+CGG 0.327520 3_2:-7180397 None:intergenic
GGACATTTGTTCAGATGTTA+AGG 0.336499 3_2:-7177665 None:intergenic
CGATTAAATGGACATGGATT+AGG 0.339220 3_2:+7180398 Msa0393140:CDS
CTGTGGATCGCTTGCATTGT+TGG 0.347554 3_2:+7180341 Msa0393140:CDS
GCTTGCATTGTTGGACCTAT+TGG 0.348772 3_2:+7180350 Msa0393140:CDS
CTATTGGTGTGTGGATTAGA+TGG 0.352343 3_2:+7180366 Msa0393140:CDS
AACTCAGTGTTACTGGGAAT+TGG 0.357866 3_2:+7179421 Msa0393140:CDS
TAAAATAGTGTCACAATCTC+TGG 0.368747 3_2:-7181160 None:intergenic
GGCATACAGTTTGGCCTGTT+GGG 0.372371 3_2:+7181186 Msa0393140:CDS
AAATGGAAGGTCACCATAGA+AGG 0.375173 3_2:+7181370 Msa0393140:exon
AACTTTGGCAATTCTTTACT+AGG 0.383927 3_2:-7177983 None:intergenic
AACAAATTGCAGCTTCATCT+TGG 0.384111 3_2:+7177613 Msa0393140:CDS
GTTGTGCTTGGCTTTCTAAT+AGG 0.393668 3_2:+7179450 Msa0393140:CDS
GAAGCCTTCCACCTTTGCCT+TGG 0.401735 3_2:-7180210 None:intergenic
GCACTAACAACTGGTTACTT+AGG 0.409745 3_2:+7179357 Msa0393140:CDS
CATCTAATCCACACACCAAT+AGG 0.415558 3_2:-7180365 None:intergenic
CAAAATAGAGGAGACAGAAT+TGG 0.415576 3_2:-7177641 None:intergenic
AATTGGCTCTTCGTTGTGCT+TGG 0.417618 3_2:+7179438 Msa0393140:CDS
GTGACAGTTTATTTACTTGA+AGG 0.423147 3_2:+7181403 Msa0393140:three_prime_UTR
GTCTAACAACGTTCAGCGGC+TGG 0.427914 3_2:+7179382 Msa0393140:CDS
TTGTTGAATTGGATGCGATT+TGG 0.438896 3_2:+7180431 Msa0393140:CDS
TGAGAGAAAGCGAGCACCCT+TGG 0.443628 3_2:+7181253 Msa0393140:CDS
CTGGCTGTTGCACTAACAAC+TGG 0.450496 3_2:+7179348 Msa0393140:CDS
AAAGTAGAGACCATATTAGA+AGG 0.455328 3_2:-7178900 None:intergenic
GAAGCATTATCCAATAACTT+TGG 0.459077 3_2:-7177998 None:intergenic
ATTAAGCAATTTCGAGAACT+AGG 0.465725 3_2:+7181427 Msa0393140:three_prime_UTR
CACTAACAACTGGTTACTTA+GGG 0.468627 3_2:+7179358 Msa0393140:CDS
TATACCAAATATGATGGAAA+AGG 0.471958 3_2:-7180111 None:intergenic
TCTCTTTCAATGCTTAAAAG+AGG 0.475659 3_2:-7177688 None:intergenic
GACATTTGTTCAGATGTTAA+GGG 0.482779 3_2:-7177664 None:intergenic
TAAGGTTAAACGTGACTTCA+CGG 0.488517 3_2:+7180165 Msa0393140:CDS
AGGCATACAGTTTGGCCTGT+TGG 0.489910 3_2:+7181185 Msa0393140:CDS
CATTAAATGGATCATGATGT+TGG 0.494289 3_2:+7177586 Msa0393140:exon
AGGAAGGTCAAGGTAAAGAA+TGG 0.496325 3_2:-7178880 None:intergenic
CTAGTCACATGACCGACACT+AGG 0.497152 3_2:-7178849 None:intergenic
TTTGGTATAGAAACAGCTAA+AGG 0.499560 3_2:+7180125 Msa0393140:CDS
TGTCTCTGCTGCTTGTATCA+TGG 0.508900 3_2:+7180469 Msa0393140:CDS
TAATCCATGTCCATTTAATC+GGG 0.510063 3_2:-7180396 None:intergenic
CTCTTTCAATGCTTAAAAGA+GGG 0.510773 3_2:-7177687 None:intergenic
CAGTACTCAAACAACCCAAC+AGG 0.511199 3_2:-7181200 None:intergenic
CTGTGTGCCTATTTGGAGAA+TGG 0.525340 3_2:+7181338 Msa0393140:CDS
TATGCATATCATTCATTGAG+TGG 0.528347 3_2:+7177477 Msa0393140:five_prime_UTR
ATGATTGCTGAATTCAAGAA+TGG 0.528647 3_2:+7180305 Msa0393140:CDS
AGCCAAGACCAAGGCAAAGG+TGG 0.538663 3_2:+7180202 Msa0393140:CDS
TGTTTCTATACCAAATATGA+TGG 0.543659 3_2:-7180117 None:intergenic
TGCTTGAACTCAGTGTTACT+GGG 0.546484 3_2:+7179415 Msa0393140:CDS
ACATCACTTAGTAGTTATGC+TGG 0.551387 3_2:+7180235 Msa0393140:CDS
AGATGTTAAGGGCAAAATAG+AGG 0.551740 3_2:-7177653 None:intergenic
TTCATTGAACTCAGCGACAA+AGG 0.556646 3_2:-7181229 None:intergenic
ATGGATGAATTATAAATGGA+AGG 0.559784 3_2:+7181357 Msa0393140:exon
GGTATTAACAAGATATACTC+TGG 0.561065 3_2:+7178812 Msa0393140:intron
GGTCAAGGTAAAGAATGGTT+TGG 0.564374 3_2:-7178875 None:intergenic
GTATAAACATATGCTCTCCA+AGG 0.565816 3_2:-7181270 None:intergenic
AAGTTATTTGGCCCTAGTGT+CGG 0.566597 3_2:+7178837 Msa0393140:CDS
TAGAGACCATATTAGAAGGA+AGG 0.567138 3_2:-7178896 None:intergenic
TGATTCTGAAGACATACAGC+AGG 0.567210 3_2:+7177711 Msa0393140:CDS
GGACATGGATTAGGATCAAG+AGG 0.570024 3_2:+7180407 Msa0393140:CDS
TTATCCCGATTAAATGGACA+TGG 0.574742 3_2:+7180392 Msa0393140:CDS
TAGAGCCAAGACCAAGGCAA+AGG 0.580140 3_2:+7180199 Msa0393140:CDS
AAGACCAAGGCAAAGGTGGA+AGG 0.581372 3_2:+7180206 Msa0393140:CDS
TTGTTGGACCTATTGGTGTG+TGG 0.595973 3_2:+7180357 Msa0393140:CDS
AAACAGCTAAAGGTTTCAAG+TGG 0.608710 3_2:+7180135 Msa0393140:CDS
TCTTTCAATGCTTAAAAGAG+GGG 0.609892 3_2:-7177686 None:intergenic
TAGTCACATGACCGACACTA+GGG 0.613234 3_2:-7178848 None:intergenic
CCATATTAGAAGGAAGGTCA+AGG 0.628711 3_2:-7178890 None:intergenic
GGGAGTCTAACAACGTTCAG+CGG 0.633659 3_2:+7179378 Msa0393140:CDS
TATAAACATATGCTCTCCAA+GGG 0.634225 3_2:-7181269 None:intergenic
AGCTAGTAGAGCCAAGACCA+AGG 0.636125 3_2:+7180193 Msa0393140:CDS
ATGGTGAAAATGCTTATCTG+TGG 0.657260 3_2:+7180324 Msa0393140:CDS
GAATTCATAGAGAAGAAGAG+AGG 0.668905 3_2:-7177450 None:intergenic
TAGCTGCTACTTGAAAACAC+TGG 0.719362 3_2:-7181493 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATTTCAATTATTGTA+CGG + chr3_2:7178497-7178516 Msa0393140:intron 10.0%
!!! TATTTTAAATAATCAATCAT+AGG - chr3_2:7179140-7179159 None:intergenic 10.0%
!!! TATATCTTTTTAATGATTTG+AGG - chr3_2:7177841-7177860 None:intergenic 15.0%
!!! TCATTTTCTGTTTATAATAT+CGG + chr3_2:7178428-7178447 Msa0393140:intron 15.0%
!! AACAATAATCATGTATTATA+GGG + chr3_2:7179970-7179989 Msa0393140:intron 15.0%
!!! TTTTGTTTATATTCATGAAT+AGG + chr3_2:7180623-7180642 Msa0393140:intron 15.0%
!!! TTCTTATTATTTTGATATCA+TGG + chr3_2:7181067-7181086 Msa0393140:intron 15.0%
!!! TCTTATTATTTTGATATCAT+GGG + chr3_2:7181068-7181087 Msa0393140:intron 15.0%
!!! AATTACAGTTTGTTTAAATT+CGG - chr3_2:7181535-7181554 None:intergenic 15.0%
!!! AAGATTCAAAACATTTTTGT+TGG + chr3_2:7177757-7177776 Msa0393140:intron 20.0%
!!! TTTTGTTTTGCTATAGTAAA+TGG + chr3_2:7177924-7177943 Msa0393140:intron 20.0%
!! AACAGAAAATGAAAATCAAT+AGG - chr3_2:7178420-7178439 None:intergenic 20.0%
!! ATTATATTGCCCAAAAATAA+AGG - chr3_2:7178700-7178719 None:intergenic 20.0%
!! TATAATGAACTTATGAATTC+TGG + chr3_2:7178714-7178733 Msa0393140:intron 20.0%
!!! TACTGTTCAATAACTTTTTA+CGG + chr3_2:7179681-7179700 Msa0393140:intron 20.0%
!!! AATTGTAAGTTTTGTAATAC+AGG + chr3_2:7179919-7179938 Msa0393140:intron 20.0%
!! CAACAATAATCATGTATTAT+AGG + chr3_2:7179969-7179988 Msa0393140:intron 20.0%
!! GAAACTTGAAATTAAGTTAA+AGG - chr3_2:7180700-7180719 None:intergenic 20.0%
!!! TATTTTGATAAAACTGCAAT+AGG - chr3_2:7181016-7181035 None:intergenic 20.0%
!!! ATATTTCACTTGTTTGATTT+AGG + chr3_2:7181131-7181150 Msa0393140:intron 20.0%
!!! ATATGTTCTTCATTCTTTTT+AGG + chr3_2:7181303-7181322 Msa0393140:CDS 20.0%
!!! TATGTTCTTCATTCTTTTTA+GGG + chr3_2:7181304-7181323 Msa0393140:CDS 20.0%
! GACATACATATCACATTAAA+TGG + chr3_2:7177573-7177592 Msa0393140:exon 25.0%
! TAAAGAATTGCCAAAGTTAT+TGG + chr3_2:7177988-7178007 Msa0393140:CDS 25.0%
! TGCTTCATATTTGATTCATT+TGG + chr3_2:7178015-7178034 Msa0393140:CDS 25.0%
!! ATTTTATCATTGAAGTTCAG+AGG - chr3_2:7178073-7178092 None:intergenic 25.0%
! AAATATCATAAAGCTGAAGT+TGG - chr3_2:7178284-7178303 None:intergenic 25.0%
!! AACTTCAGCTTTATGATATT+TGG + chr3_2:7178283-7178302 Msa0393140:intron 25.0%
! TGAAATAAAACCTCATGTAA+TGG + chr3_2:7178364-7178383 Msa0393140:intron 25.0%
!! GATTATCTTCATCATCTTTT+AGG + chr3_2:7178466-7178485 Msa0393140:intron 25.0%
! GTTGTTCATACTTTATACAA+TGG - chr3_2:7178551-7178570 None:intergenic 25.0%
!!! TTGTTGCATTCCTTTATTTT+TGG + chr3_2:7178687-7178706 Msa0393140:intron 25.0%
!!! TGTTGCATTCCTTTATTTTT+GGG + chr3_2:7178688-7178707 Msa0393140:intron 25.0%
!!! TTGTTTTGCTATTATAATGC+AGG + chr3_2:7178791-7178810 Msa0393140:intron 25.0%
! TTGATGTCATTATGATACAA+AGG - chr3_2:7178986-7179005 None:intergenic 25.0%
!! AAAAGTGTAGACTTAATTTC+TGG + chr3_2:7179011-7179030 Msa0393140:intron 25.0%
! CAACTATAGTTTATGAGAAA+AGG + chr3_2:7179089-7179108 Msa0393140:intron 25.0%
!! ACTTTTATGAATGTCTTTCT+AGG + chr3_2:7179257-7179276 Msa0393140:intron 25.0%
! TCTAATAGGTAATGTTAAGA+AGG + chr3_2:7179464-7179483 Msa0393140:intron 25.0%
!!! GTTTGATAAGTATGTTTTAG+TGG + chr3_2:7179490-7179509 Msa0393140:intron 25.0%
!!! ATAAGTATGTTTTAGTGGTA+TGG + chr3_2:7179495-7179514 Msa0393140:intron 25.0%
!! TTTTATATGAGAACTAGAGA+AGG + chr3_2:7179751-7179770 Msa0393140:intron 25.0%
! TTTATATGAGAACTAGAGAA+GGG + chr3_2:7179752-7179771 Msa0393140:intron 25.0%
!! TATACCAAATATGATGGAAA+AGG - chr3_2:7180114-7180133 None:intergenic 25.0%
!! TGTTTCTATACCAAATATGA+TGG - chr3_2:7180120-7180139 None:intergenic 25.0%
! ACATGAATATTTGATTGAGA+AGG - chr3_2:7180551-7180570 None:intergenic 25.0%
!!! ACTTAATTTCAAGTTTCAAG+AGG + chr3_2:7180703-7180722 Msa0393140:intron 25.0%
! TACATGATCATTGAATGATA+TGG + chr3_2:7180825-7180844 Msa0393140:intron 25.0%
! TTATATCATCGTATCAATGA+GGG - chr3_2:7180888-7180907 None:intergenic 25.0%
! ATTATATCATCGTATCAATG+AGG - chr3_2:7180889-7180908 None:intergenic 25.0%
!! GTTGACGTTTTTAAACATAA+AGG + chr3_2:7180946-7180965 Msa0393140:intron 25.0%
! ATAGATCAAACACATGTTAA+AGG + chr3_2:7180987-7181006 Msa0393140:intron 25.0%
!!! GATTGTGACACTATTTTAAA+AGG + chr3_2:7181165-7181184 Msa0393140:CDS 25.0%
!!! ATTTTAAAAGGCATACAGTT+TGG + chr3_2:7181177-7181196 Msa0393140:CDS 25.0%
!! ATGTTCTTCATTCTTTTTAG+GGG + chr3_2:7181305-7181324 Msa0393140:CDS 25.0%
! GAGAATGGATGAATTATAAA+TGG + chr3_2:7181353-7181372 Msa0393140:exon 25.0%
! ATGGATGAATTATAAATGGA+AGG + chr3_2:7181357-7181376 Msa0393140:exon 25.0%
!!! TCTTTTTCAATGAAAATGTC+AGG + chr3_2:7181463-7181482 Msa0393140:three_prime_UTR 25.0%
TATGCATATCATTCATTGAG+TGG + chr3_2:7177477-7177496 Msa0393140:five_prime_UTR 30.0%
CATTAAATGGATCATGATGT+TGG + chr3_2:7177586-7177605 Msa0393140:exon 30.0%
GACATTTGTTCAGATGTTAA+GGG - chr3_2:7177667-7177686 None:intergenic 30.0%
TCTTTCAATGCTTAAAAGAG+GGG - chr3_2:7177689-7177708 None:intergenic 30.0%
CTCTTTCAATGCTTAAAAGA+GGG - chr3_2:7177690-7177709 None:intergenic 30.0%
TCTCTTTCAATGCTTAAAAG+AGG - chr3_2:7177691-7177710 None:intergenic 30.0%
TGAGGATTAAGATTGAATGA+CGG - chr3_2:7177823-7177842 None:intergenic 30.0%
CAGTGTAAAATGTTTCACAT+TGG - chr3_2:7177874-7177893 None:intergenic 30.0%
AACTTTGGCAATTCTTTACT+AGG - chr3_2:7177986-7178005 None:intergenic 30.0%
! GAAGCATTATCCAATAACTT+TGG - chr3_2:7178001-7178020 None:intergenic 30.0%
!! TTGATTCATTTGGCTGTTTT+CGG + chr3_2:7178025-7178044 Msa0393140:CDS 30.0%
GTAATGGTCAAATGGAAATA+AGG - chr3_2:7178125-7178144 None:intergenic 30.0%
TATTTCCATTTGACCATTAC+TGG + chr3_2:7178125-7178144 Msa0393140:intron 30.0%
! ACTATTTTCAGTTCATGTTG+TGG + chr3_2:7178166-7178185 Msa0393140:intron 30.0%
AGATAATCAAGTCTCCTATA+CGG - chr3_2:7178454-7178473 None:intergenic 30.0%
!!! TTCATCATCTTTTAGGATCT+AGG + chr3_2:7178473-7178492 Msa0393140:intron 30.0%
GGTATTAACAAGATATACTC+TGG + chr3_2:7178812-7178831 Msa0393140:intron 30.0%
TATACTCTGGACAAGTTATT+TGG + chr3_2:7178825-7178844 Msa0393140:CDS 30.0%
AAAGTAGAGACCATATTAGA+AGG - chr3_2:7178903-7178922 None:intergenic 30.0%
TAATATGTATGTCAGAGAGA+GGG - chr3_2:7178946-7178965 None:intergenic 30.0%
CGGAGCTTCTTAAAAATTTA+AGG - chr3_2:7179197-7179216 None:intergenic 30.0%
! TCAAAAAAGTCTGTTGCTTA+TGG - chr3_2:7179233-7179252 None:intergenic 30.0%
TTATGAATGTCTTTCTAGGT+TGG + chr3_2:7179261-7179280 Msa0393140:intron 30.0%
!!! TAGGTTGGTTCTTTTCTTAT+GGG + chr3_2:7179276-7179295 Msa0393140:intron 30.0%
! AGGATGAGCTTTTGAATAAT+TGG + chr3_2:7180063-7180082 Msa0393140:intron 30.0%
TTTGGTATAGAAACAGCTAA+AGG + chr3_2:7180125-7180144 Msa0393140:CDS 30.0%
ATGATTGCTGAATTCAAGAA+TGG + chr3_2:7180305-7180324 Msa0393140:CDS 30.0%
! TGGATTTTATCCCGATTAAA+TGG + chr3_2:7180386-7180405 Msa0393140:CDS 30.0%
TAATCCATGTCCATTTAATC+GGG - chr3_2:7180399-7180418 None:intergenic 30.0%
CTAATCCATGTCCATTTAAT+CGG - chr3_2:7180400-7180419 None:intergenic 30.0%
GGAAGAAAAAAAACACATTC+AGG + chr3_2:7180672-7180691 Msa0393140:intron 30.0%
TAAAATAGTGTCACAATCTC+TGG - chr3_2:7181163-7181182 None:intergenic 30.0%
TATAAACATATGCTCTCCAA+GGG - chr3_2:7181272-7181291 None:intergenic 30.0%
TAATATACTGTGTGCCTATT+TGG + chr3_2:7181331-7181350 Msa0393140:CDS 30.0%
AATTCATCCATTCTCCAAAT+AGG - chr3_2:7181348-7181367 None:intergenic 30.0%
GTGACAGTTTATTTACTTGA+AGG + chr3_2:7181403-7181422 Msa0393140:three_prime_UTR 30.0%
ATTAAGCAATTTCGAGAACT+AGG + chr3_2:7181427-7181446 Msa0393140:three_prime_UTR 30.0%
GAATTCATAGAGAAGAAGAG+AGG - chr3_2:7177453-7177472 None:intergenic 35.0%
AACAAATTGCAGCTTCATCT+TGG + chr3_2:7177613-7177632 Msa0393140:CDS 35.0%
CAAAATAGAGGAGACAGAAT+TGG - chr3_2:7177644-7177663 None:intergenic 35.0%
AGATGTTAAGGGCAAAATAG+AGG - chr3_2:7177656-7177675 None:intergenic 35.0%
GGACATTTGTTCAGATGTTA+AGG - chr3_2:7177668-7177687 None:intergenic 35.0%
! TGCGAGTAGTTAATCGTTTT+TGG + chr3_2:7178094-7178113 Msa0393140:intron 35.0%
ATCGTAAATCCAACCAGTAA+TGG - chr3_2:7178141-7178160 None:intergenic 35.0%
ACATTGTACACCATTACATG+AGG - chr3_2:7178377-7178396 None:intergenic 35.0%
GTTTATAATATCGGCCGTAT+AGG + chr3_2:7178437-7178456 Msa0393140:intron 35.0%
!! TGTCCTGTATTTTTCAACCT+AGG + chr3_2:7178588-7178607 Msa0393140:intron 35.0%
!! GTCCTGTATTTTTCAACCTA+GGG + chr3_2:7178589-7178608 Msa0393140:intron 35.0%
! TTCCCTAGGTTGAAAAATAC+AGG - chr3_2:7178594-7178613 None:intergenic 35.0%
TCTGGTCATACTTTCATACT+AGG + chr3_2:7178732-7178751 Msa0393140:intron 35.0%
TAGAGACCATATTAGAAGGA+AGG - chr3_2:7178899-7178918 None:intergenic 35.0%
AATATGTATGTCAGAGAGAG+GGG - chr3_2:7178945-7178964 None:intergenic 35.0%
CTAATATGTATGTCAGAGAG+AGG - chr3_2:7178947-7178966 None:intergenic 35.0%
GTCATTATGATACAAAGGAG+TGG - chr3_2:7178981-7179000 None:intergenic 35.0%
CTGGTAACATTAGACAATGA+TGG + chr3_2:7179030-7179049 Msa0393140:intron 35.0%
!!! CTAGGTTGGTTCTTTTCTTA+TGG + chr3_2:7179275-7179294 Msa0393140:intron 35.0%
!! TTGGTTCTTTTCTTATGGGA+TGG + chr3_2:7179280-7179299 Msa0393140:intron 35.0%
! TCTTTTCTTATGGGATGGTT+TGG + chr3_2:7179285-7179304 Msa0393140:intron 35.0%
ATCAAATGTGTCCAAGTATC+TGG + chr3_2:7179329-7179348 Msa0393140:intron 35.0%
CACTAACAACTGGTTACTTA+GGG + chr3_2:7179358-7179377 Msa0393140:CDS 35.0%
ACACACACACATATATGAGA+AGG - chr3_2:7180009-7180028 None:intergenic 35.0%
TTGAATAATTGGAGTTCTGC+AGG + chr3_2:7180074-7180093 Msa0393140:intron 35.0%
TGAATAATTGGAGTTCTGCA+GGG + chr3_2:7180075-7180094 Msa0393140:intron 35.0%
! GTTGCCTTTTCCATCATATT+TGG + chr3_2:7180107-7180126 Msa0393140:CDS 35.0%
AAACAGCTAAAGGTTTCAAG+TGG + chr3_2:7180135-7180154 Msa0393140:CDS 35.0%
! GTTTCAAGTGGCTTCTTATA+AGG + chr3_2:7180147-7180166 Msa0393140:CDS 35.0%
TAAGGTTAAACGTGACTTCA+CGG + chr3_2:7180165-7180184 Msa0393140:CDS 35.0%
ACATCACTTAGTAGTTATGC+TGG + chr3_2:7180235-7180254 Msa0393140:CDS 35.0%
!!! CTGGTGTTTTTGCTGATTTT+AGG + chr3_2:7180254-7180273 Msa0393140:CDS 35.0%
!!! TGCTGATTTTAGGCTTGTTA+TGG + chr3_2:7180264-7180283 Msa0393140:intron 35.0%
!!! GCTGATTTTAGGCTTGTTAT+GGG + chr3_2:7180265-7180284 Msa0393140:intron 35.0%
!!! CTGATTTTAGGCTTGTTATG+GGG + chr3_2:7180266-7180285 Msa0393140:intron 35.0%
ATGGTGAAAATGCTTATCTG+TGG + chr3_2:7180324-7180343 Msa0393140:CDS 35.0%
TTATCCCGATTAAATGGACA+TGG + chr3_2:7180392-7180411 Msa0393140:CDS 35.0%
CGATTAAATGGACATGGATT+AGG + chr3_2:7180398-7180417 Msa0393140:CDS 35.0%
!! GATCAAGAGGTTTGTTGAAT+TGG + chr3_2:7180420-7180439 Msa0393140:CDS 35.0%
TTGTTGAATTGGATGCGATT+TGG + chr3_2:7180431-7180450 Msa0393140:CDS 35.0%
ACTTTCATAGCTATAAGCTC+TGG + chr3_2:7180579-7180598 Msa0393140:intron 35.0%
AGTGCACTAAGAATGAAAGT+TGG - chr3_2:7180790-7180809 None:intergenic 35.0%
GTATAAACATATGCTCTCCA+AGG - chr3_2:7181273-7181292 None:intergenic 35.0%
! CACAACAGTTTTACCTTCTA+TGG - chr3_2:7181386-7181405 None:intergenic 35.0%
! TGATTCTGAAGACATACAGC+AGG + chr3_2:7177711-7177730 Msa0393140:CDS 40.0%
!! TTGGCTGTTTTCGGTATTCT+CGG + chr3_2:7178034-7178053 Msa0393140:CDS 40.0%
TCCATTTGACCATTACTGGT+TGG + chr3_2:7178129-7178148 Msa0393140:intron 40.0%
TCCAACCAGTAATGGTCAAA+TGG - chr3_2:7178133-7178152 None:intergenic 40.0%
GGAATAAATGCAACTACTGC+AGG - chr3_2:7178530-7178549 None:intergenic 40.0%
AAGTTATTTGGCCCTAGTGT+CGG + chr3_2:7178837-7178856 Msa0393140:CDS 40.0%
GGTCAAGGTAAAGAATGGTT+TGG - chr3_2:7178878-7178897 None:intergenic 40.0%
AGGAAGGTCAAGGTAAAGAA+TGG - chr3_2:7178883-7178902 None:intergenic 40.0%
CCATATTAGAAGGAAGGTCA+AGG - chr3_2:7178893-7178912 None:intergenic 40.0%
CCTTGACCTTCCTTCTAATA+TGG + chr3_2:7178890-7178909 Msa0393140:CDS 40.0%
CTTATGGAGAAGTTAGACGA+CGG - chr3_2:7179217-7179236 None:intergenic 40.0%
GCACTAACAACTGGTTACTT+AGG + chr3_2:7179357-7179376 Msa0393140:CDS 40.0%
ATGCTTGAACTCAGTGTTAC+TGG + chr3_2:7179414-7179433 Msa0393140:CDS 40.0%
! TGCTTGAACTCAGTGTTACT+GGG + chr3_2:7179415-7179434 Msa0393140:CDS 40.0%
! AACTCAGTGTTACTGGGAAT+TGG + chr3_2:7179421-7179440 Msa0393140:CDS 40.0%
! GTTGTGCTTGGCTTTCTAAT+AGG + chr3_2:7179450-7179469 Msa0393140:CDS 40.0%
TATATGACAAAACTCGCCGT+TGG + chr3_2:7179709-7179728 Msa0393140:intron 40.0%
CAGAGGAACTTTCAATCCAA+CGG - chr3_2:7179728-7179747 None:intergenic 40.0%
! GTTCTCATATAAAAGCGCAG+AGG - chr3_2:7179745-7179764 None:intergenic 40.0%
AATTATCGCAGTCTATGCAG+CGG + chr3_2:7180031-7180050 Msa0393140:intron 40.0%
CATCTAATCCACACACCAAT+AGG - chr3_2:7180368-7180387 None:intergenic 40.0%
!! CTATTGGTGTGTGGATTAGA+TGG + chr3_2:7180366-7180385 Msa0393140:CDS 40.0%
TCATCTGACTCTTGCTACTA+GGG + chr3_2:7180651-7180670 Msa0393140:intron 40.0%
TTCATTGAACTCAGCGACAA+AGG - chr3_2:7181232-7181251 None:intergenic 40.0%
AAATGGAAGGTCACCATAGA+AGG + chr3_2:7181370-7181389 Msa0393140:exon 40.0%
! TAGCTGCTACTTGAAAACAC+TGG - chr3_2:7181496-7181515 None:intergenic 40.0%
TGACTGTTGTCTTCAGTTGC+AGG + chr3_2:7177958-7177977 Msa0393140:intron 45.0%
!! TGGCTGTTTTCGGTATTCTC+GGG + chr3_2:7178035-7178054 Msa0393140:CDS 45.0%
!!! CAGTTTTGAGCAGATTCCCT+AGG - chr3_2:7178608-7178627 None:intergenic 45.0%
TAGTCACATGACCGACACTA+GGG - chr3_2:7178851-7178870 None:intergenic 45.0%
TAGTGCAACAGCCAGATACT+TGG - chr3_2:7179343-7179362 None:intergenic 45.0%
! AATTGGCTCTTCGTTGTGCT+TGG + chr3_2:7179438-7179457 Msa0393140:CDS 45.0%
CTATGCAGCGGTGAATTGAT+AGG + chr3_2:7180043-7180062 Msa0393140:intron 45.0%
!! GGCTTGTTATGGGGTATTAG+CGG + chr3_2:7180275-7180294 Msa0393140:intron 45.0%
GCTTGCATTGTTGGACCTAT+TGG + chr3_2:7180350-7180369 Msa0393140:CDS 45.0%
TTGTTGGACCTATTGGTGTG+TGG + chr3_2:7180357-7180376 Msa0393140:CDS 45.0%
!! GGACATGGATTAGGATCAAG+AGG + chr3_2:7180407-7180426 Msa0393140:CDS 45.0%
! TGTCTCTGCTGCTTGTATCA+TGG + chr3_2:7180469-7180488 Msa0393140:CDS 45.0%
CTCATCTGACTCTTGCTACT+AGG + chr3_2:7180650-7180669 Msa0393140:intron 45.0%
GGTCTAACTGTGATGTTGAG+TGG - chr3_2:7180867-7180886 None:intergenic 45.0%
CAGTACTCAAACAACCCAAC+AGG - chr3_2:7181203-7181222 None:intergenic 45.0%
CTGTGTGCCTATTTGGAGAA+TGG + chr3_2:7181338-7181357 Msa0393140:CDS 45.0%
!! GGCTGTTTTCGGTATTCTCG+GGG + chr3_2:7178036-7178055 Msa0393140:CDS 50.0%
CTAGTCACATGACCGACACT+AGG - chr3_2:7178852-7178871 None:intergenic 50.0%
CTGGCTGTTGCACTAACAAC+TGG + chr3_2:7179348-7179367 Msa0393140:CDS 50.0%
GGGAGTCTAACAACGTTCAG+CGG + chr3_2:7179378-7179397 Msa0393140:CDS 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr3_2:7179612-7179631 Msa0393140:intron 50.0%
AGCTAGTAGAGCCAAGACCA+AGG + chr3_2:7180193-7180212 Msa0393140:CDS 50.0%
TAGAGCCAAGACCAAGGCAA+AGG + chr3_2:7180199-7180218 Msa0393140:CDS 50.0%
TTCCACCTTTGCCTTGGTCT+TGG - chr3_2:7180207-7180226 None:intergenic 50.0%
AAGACCAAGGCAAAGGTGGA+AGG + chr3_2:7180206-7180225 Msa0393140:CDS 50.0%
CTGTGGATCGCTTGCATTGT+TGG + chr3_2:7180341-7180360 Msa0393140:CDS 50.0%
AGGCATACAGTTTGGCCTGT+TGG + chr3_2:7181185-7181204 Msa0393140:CDS 50.0%
GGCATACAGTTTGGCCTGTT+GGG + chr3_2:7181186-7181205 Msa0393140:CDS 50.0%
GTCTAACAACGTTCAGCGGC+TGG + chr3_2:7179382-7179401 Msa0393140:CDS 55.0%
AGCCAAGACCAAGGCAAAGG+TGG + chr3_2:7180202-7180221 Msa0393140:CDS 55.0%
GAAGCCTTCCACCTTTGCCT+TGG - chr3_2:7180213-7180232 None:intergenic 55.0%
TGAGAGAAAGCGAGCACCCT+TGG + chr3_2:7181253-7181272 Msa0393140:CDS 55.0%
AGAGGGGAACGAGCGAGGAA+GGG - chr3_2:7178929-7178948 None:intergenic 60.0%
GAGAGGGGAACGAGCGAGGA+AGG - chr3_2:7178930-7178949 None:intergenic 65.0%
CAGAGAGAGGGGAACGAGCG+AGG - chr3_2:7178934-7178953 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 7177441 7181562 7177441 ID=Msa0393140;Name=Msa0393140
chr3_2 mRNA 7177441 7181562 7177441 ID=Msa0393140-mRNA-1;Parent=Msa0393140;Name=Msa0393140-mRNA-1;_AED=0.23;_eAED=0.23;_QI=115|0.71|0.62|1|0.28|0.12|8|191|358
chr3_2 exon 7177441 7177509 7177441 ID=Msa0393140-mRNA-1:exon:1747;Parent=Msa0393140-mRNA-1
chr3_2 exon 7177546 7177732 7177546 ID=Msa0393140-mRNA-1:exon:1748;Parent=Msa0393140-mRNA-1
chr3_2 exon 7177974 7178057 7177974 ID=Msa0393140-mRNA-1:exon:1749;Parent=Msa0393140-mRNA-1
chr3_2 exon 7178813 7178911 7178813 ID=Msa0393140-mRNA-1:exon:1750;Parent=Msa0393140-mRNA-1
chr3_2 exon 7179345 7179471 7179345 ID=Msa0393140-mRNA-1:exon:1751;Parent=Msa0393140-mRNA-1
chr3_2 exon 7180096 7180279 7180096 ID=Msa0393140-mRNA-1:exon:1752;Parent=Msa0393140-mRNA-1
chr3_2 exon 7180295 7180517 7180295 ID=Msa0393140-mRNA-1:exon:1753;Parent=Msa0393140-mRNA-1
chr3_2 exon 7181153 7181562 7181153 ID=Msa0393140-mRNA-1:exon:1754;Parent=Msa0393140-mRNA-1
chr3_2 five_prime_UTR 7177441 7177509 7177441 ID=Msa0393140-mRNA-1:five_prime_utr;Parent=Msa0393140-mRNA-1
chr3_2 five_prime_UTR 7177546 7177591 7177546 ID=Msa0393140-mRNA-1:five_prime_utr;Parent=Msa0393140-mRNA-1
chr3_2 CDS 7177592 7177732 7177592 ID=Msa0393140-mRNA-1:cds;Parent=Msa0393140-mRNA-1
chr3_2 CDS 7177974 7178057 7177974 ID=Msa0393140-mRNA-1:cds;Parent=Msa0393140-mRNA-1
chr3_2 CDS 7178813 7178911 7178813 ID=Msa0393140-mRNA-1:cds;Parent=Msa0393140-mRNA-1
chr3_2 CDS 7179345 7179471 7179345 ID=Msa0393140-mRNA-1:cds;Parent=Msa0393140-mRNA-1
chr3_2 CDS 7180096 7180279 7180096 ID=Msa0393140-mRNA-1:cds;Parent=Msa0393140-mRNA-1
chr3_2 CDS 7180295 7180517 7180295 ID=Msa0393140-mRNA-1:cds;Parent=Msa0393140-mRNA-1
chr3_2 CDS 7181153 7181371 7181153 ID=Msa0393140-mRNA-1:cds;Parent=Msa0393140-mRNA-1
chr3_2 three_prime_UTR 7181372 7181562 7181372 ID=Msa0393140-mRNA-1:three_prime_utr;Parent=Msa0393140-mRNA-1
Gene Sequence

>Msa0393140

ATGGATCATGATGTTGGAGTTAACAAATTGCAGCTTCATCTTGGTGCATCCAATTCTGTCTCCTCTATTTTGCCCTTAACATCTGAACAAATGTCCCCTCTTTTAAGCATTGAAAGAGATGATTCTGAAGACATACAGCAGTTGCAGGAACCTAGTAAAGAATTGCCAAAGTTATTGGATAATGCTTCATATTTGATTCATTTGGCTGTTTTCGGTATTCTCGGGGTATTAACAAGATATACTCTGGACAAGTTATTTGGCCCTAGTGTCGGTCATGTGACTAGTGACCAAACCATTCTTTACCTTGACCTTCCTTCTAATATGTATCTGGCTGTTGCACTAACAACTGGTTACTTAGGGAGTCTAACAACGTTCAGCGGCTGGAATCAGAAAATGCTTGAACTCAGTGTTACTGGGAATTGGCTCTTCGTTGTGCTTGGCTTTCTAATAGGGTTATTTCTTGTTGCCTTTTCCATCATATTTGGTATAGAAACAGCTAAAGGTTTCAAGTGGCTTCTTATAAGGTTAAACGTGACTTCACGGAGTGAAGCTAGTAGAGCCAAGACCAAGGCAAAGGTGGAAGGCTTCAAACATCACTTAGTAGTTATGCTGGTGTTTTTGCTGATTTTAGGCTTCGGTGTATTGATGATTGCTGAATTCAAGAATGGTGAAAATGCTTATCTGTGGATCGCTTGCATTGTTGGACCTATTGGTGTGTGGATTAGATGGATTTTATCCCGATTAAATGGACATGGATTAGGATCAAGAGGTTTGTTGAATTGGATGCGATTTGGAACTCTAACTGCAAATGTCTCTGCTGCTTGTATCATGGCTGCACTTGCTACAACAAAGATATATGTGAACACCAGAGATTGTGACACTATTTTAAAAGGCATACAGTTTGGCCTGTTGGGTTGTTTGAGTACTGTCTCTACCTTTGTCGCTGAGTTCAATGAAATGAGAGAAAGCGAGCACCCTTGGAGAGCATATGTTTATACTATAATCACAATATGTTCTTCATTCTTTTTAGGGGTCTTAATATACTGTGTGCCTATTTGGAGAATGGATGAATTATAA

Protein sequence

>Msa0393140

MDHDVGVNKLQLHLGASNSVSSILPLTSEQMSPLLSIERDDSEDIQQLQEPSKELPKLLDNASYLIHLAVFGILGVLTRYTLDKLFGPSVGHVTSDQTILYLDLPSNMYLAVALTTGYLGSLTTFSGWNQKMLELSVTGNWLFVVLGFLIGLFLVAFSIIFGIETAKGFKWLLIRLNVTSRSEASRAKTKAKVEGFKHHLVVMLVFLLILGFGVLMIAEFKNGENAYLWIACIVGPIGVWIRWILSRLNGHGLGSRGLLNWMRFGTLTANVSAACIMAALATTKIYVNTRDCDTILKGIQFGLLGCLSTVSTFVAEFNEMRESEHPWRAYVYTIITICSSFFLGVLIYCVPIWRMDEL*