AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0622390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622390 MtrunA17_Chr4g0068341 83.646 373 14 2 2 327 273 645 0.0 606
Msa0622390 MtrunA17_Chr4g0068341 30.846 201 138 1 3 202 171 371 1.17e-25 108
Msa0622390 MtrunA17_Chr4g0068341 28.502 207 147 1 2 207 204 410 5.51e-24 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622390 AT3G17040.2 61.190 353 87 3 2 304 255 607 4.82e-144 421
Msa0622390 AT3G17040.2 26.923 286 172 3 3 251 187 472 4.61e-26 109
Msa0622390 AT3G17040.2 31.280 211 144 1 1 210 151 361 5.91e-25 106
Msa0622390 AT3G17040.1 61.190 353 87 3 2 304 289 641 9.96e-144 421
Msa0622390 AT3G17040.1 26.923 286 172 3 3 251 221 506 4.19e-26 109
Msa0622390 AT3G17040.1 31.280 211 144 1 1 210 185 395 6.20e-25 106
Msa0622390 AT3G17040.4 78.344 157 34 0 2 158 255 411 2.65e-87 270
Msa0622390 AT3G17040.4 31.472 197 134 1 3 198 187 383 2.53e-25 106
Msa0622390 AT3G17040.4 31.280 211 144 1 1 210 151 361 5.73e-25 105
Msa0622390 AT3G17040.3 78.344 157 34 0 2 158 289 445 2.67e-87 270
Msa0622390 AT3G17040.3 31.472 197 134 1 3 198 221 417 3.43e-25 106
Msa0622390 AT3G17040.3 31.280 211 144 1 1 210 185 395 7.67e-25 105

Find 77 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGCACATTGAACGAATT+TGG 0.169600 4_2:+74818568 None:intergenic
ACGAATTTGGGTCCATCTTC+AGG 0.278424 4_2:+74818581 None:intergenic
ATAGGTTCGCTTGGCATGTC+TGG 0.285070 4_2:-74820948 Msa0622390:CDS
CTTGGTCGCCATATCCTTCT+TGG 0.297552 4_2:+74818349 None:intergenic
AATGCAGGCATGGGGTGTTC+TGG 0.316093 4_2:-74819940 Msa0622390:intron
AGATGATGCTTCGTGGGTTA+TGG 0.321698 4_2:-74818650 Msa0622390:CDS
TTCCAGCTTGGACACATCTA+TGG 0.347001 4_2:+74818420 None:intergenic
ATCCCAGGCATCAACCTGTT+TGG 0.362989 4_2:-74820753 Msa0622390:CDS
TTGTTCGTAGAAGGAAATTT+CGG 0.364988 4_2:+74818382 None:intergenic
GGCTCGATATTTATTCAATC+AGG 0.377634 4_2:-74821334 Msa0622390:CDS
CTAATAGGCTTGGGCTCAAA+TGG 0.378024 4_2:-74821175 Msa0622390:intron
GGCTCAAATGGAGGTGGAAC+AGG 0.382782 4_2:-74821163 Msa0622390:CDS
GTTCAAGAGAGCATCTGAAT+TGG 0.383806 4_2:-74820776 Msa0622390:CDS
GTGGCACATTGAACGAATTT+GGG 0.394817 4_2:+74818569 None:intergenic
GGAAGAAAACTTCTAAAGAT+AGG 0.396553 4_2:-74820889 Msa0622390:CDS
GCAGAGGGTTGGCAATCTTT+CGG 0.407854 4_2:-74819916 Msa0622390:CDS
CTTCAAGCAATGCAAGTGTT+TGG 0.413000 4_2:+74821379 None:intergenic
ACCCTGCCATTGACAGTTTG+AGG 0.415164 4_2:-74818609 Msa0622390:CDS
GTCCAAGCTGGAAGTTCAAC+TGG 0.415566 4_2:-74818410 Msa0622390:CDS
CTCCTCAAACTGTCAATGGC+AGG 0.426754 4_2:+74818607 None:intergenic
GTAATATTTCTCATGGAATC+AGG 0.428842 4_2:+74818547 None:intergenic
TAGTTACCTGCTGGAAGTAA+AGG 0.442310 4_2:+74819772 None:intergenic
TACCGCTAGGAAATTGTTTG+AGG 0.447862 4_2:-74821130 Msa0622390:intron
ATGGATGACTTGGGCATCAC+TGG 0.453367 4_2:-74819838 Msa0622390:CDS
TCTTGTCCTTGTTCAGCAAA+GGG 0.460045 4_2:+74818123 None:intergenic
GATGATGCTTCGTGGGTTAT+GGG 0.466333 4_2:-74818649 Msa0622390:CDS
ATCCTAAAAGCTGTGCTAGT+TGG 0.470170 4_2:-74821299 Msa0622390:CDS
TGGTTGGCAGTTCTACTACT+TGG 0.472252 4_2:+74818331 None:intergenic
TTCCCTTGTCAATCTTGCCC+AGG 0.474487 4_2:+74820908 None:intergenic
GATTCCATGAGAAATATTAC+CGG 0.481747 4_2:-74818544 Msa0622390:CDS
TAGGTTCGCTTGGCATGTCT+GGG 0.485244 4_2:-74820947 Msa0622390:CDS
ACTTGCATTGCTTGAAGCTA+AGG 0.488961 4_2:-74821373 Msa0622390:CDS
GAGTCTCCTCAAACTGTCAA+TGG 0.490117 4_2:+74818603 None:intergenic
TTCTTGTCCTTGTTCAGCAA+AGG 0.496090 4_2:+74818122 None:intergenic
TCGTAACCTTTACTTCCAGC+AGG 0.496782 4_2:-74819778 Msa0622390:intron
TCGAAAGGTCTTCAATATTG+TGG 0.498161 4_2:-74821420 Msa0622390:CDS
AACCAAACAGGTTGATGCCT+GGG 0.503303 4_2:+74820751 None:intergenic
TTCCAGTTGAACTTCCAGCT+TGG 0.505485 4_2:+74818408 None:intergenic
CATGGGGTGTTCTGGAGCAG+AGG 0.509511 4_2:-74819932 Msa0622390:CDS
AAGCCACTTACAAACCAAAC+AGG 0.513611 4_2:+74820739 None:intergenic
ATGGGGTGTTCTGGAGCAGA+GGG 0.520442 4_2:-74819931 Msa0622390:CDS
CGATCCGGTAATATTTCTCA+TGG 0.522147 4_2:+74818540 None:intergenic
ATCTTGCCCTTTGCTGAACA+AGG 0.524666 4_2:-74818129 Msa0622390:CDS
ATCCATAGATGTGTCCAAGC+TGG 0.527168 4_2:-74818422 Msa0622390:CDS
TTTGAGGAGACTCCTGAAGA+TGG 0.527639 4_2:-74818593 Msa0622390:CDS
AAACCAAACAGGTTGATGCC+TGG 0.535498 4_2:+74820750 None:intergenic
CGAATTTCTTCAGCACGCAC+AGG 0.537682 4_2:+74819798 None:intergenic
GAGCATCTGAATTGGATCCC+AGG 0.540159 4_2:-74820768 Msa0622390:CDS
CATCCCTTGGATTTAGAGCA+TGG 0.545663 4_2:+74820866 None:intergenic
TGAAGGAGAACAGCATCCCT+TGG 0.546657 4_2:+74820853 None:intergenic
GGCTTGGGCTCAAATGGAGG+TGG 0.554574 4_2:-74821169 Msa0622390:CDS
AAGTTGTAGATGATGCTTCG+TGG 0.557897 4_2:-74818657 Msa0622390:CDS
AGTTGTAGATGATGCTTCGT+GGG 0.575012 4_2:-74818656 Msa0622390:CDS
TCCTCAAACTGTCAATGGCA+GGG 0.577336 4_2:+74818608 None:intergenic
TAAGGCGAATAGATATCAGC+AGG 0.578086 4_2:-74821355 Msa0622390:CDS
CATGGTTGATTATTCTAGTG+AGG 0.579626 4_2:-74818509 Msa0622390:CDS
GTTATGTGACATGGATGACT+TGG 0.580592 4_2:-74819848 Msa0622390:CDS
GGTGTTCTGGAGCAGAGGGT+TGG 0.581149 4_2:-74819927 Msa0622390:CDS
GCATCACTGGAGGAAGATCA+AGG 0.582111 4_2:-74819825 Msa0622390:CDS
TAGGCCATGCTCTAAATCCA+AGG 0.584053 4_2:-74820870 Msa0622390:CDS
TTATGAATAGAATGCAGTGC+AGG 0.596113 4_2:-74820983 Msa0622390:intron
AGGAAAACTCTCGTACCGCT+AGG 0.596740 4_2:-74821143 Msa0622390:CDS
GCAAGGAATCTGCTTTCGAA+AGG 0.604942 4_2:-74821435 Msa0622390:CDS
ATTCTCAGAGTTATGTGACA+TGG 0.605787 4_2:-74819857 Msa0622390:CDS
CTATTAATGCAAGAGACTGA+AGG 0.615485 4_2:+74820836 None:intergenic
ATAGGCTTGGGCTCAAATGG+AGG 0.638738 4_2:-74821172 Msa0622390:intron
TAACCTGGGCAAGATTGACA+AGG 0.641649 4_2:-74820911 Msa0622390:CDS
GATGACTTGGGCATCACTGG+AGG 0.641810 4_2:-74819835 Msa0622390:CDS
AGGCCATGCTCTAAATCCAA+GGG 0.645369 4_2:-74820869 Msa0622390:CDS
TTTCATATAATGCAGGCATG+GGG 0.657586 4_2:-74819948 Msa0622390:intron
TGAGGATGATGATAATGATG+TGG 0.677534 4_2:-74818491 Msa0622390:CDS
ATATTTCTCATGGAATCAGG+TGG 0.677602 4_2:+74818550 None:intergenic
AACCTGGGCAAGATTGACAA+GGG 0.688091 4_2:-74820910 Msa0622390:CDS
AGGTTCGCTTGGCATGTCTG+GGG 0.690635 4_2:-74820946 Msa0622390:CDS
TTATGTGACATGGATGACTT+GGG 0.702914 4_2:-74819847 Msa0622390:CDS
CTGAGAATTTATATTCAACG+AGG 0.719216 4_2:+74819872 None:intergenic
AACCTCAAACAATTTCCTAG+CGG 0.720299 4_2:+74821128 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTTAAATAAATCTGA+AGG + chr4_2:74818440-74818459 None:intergenic 10.0%
!!! TTTTCATTAGTAAAAAATAA+TGG + chr4_2:74818900-74818919 None:intergenic 10.0%
!! AAATAGGATTTAAAAAAAAA+TGG + chr4_2:74819499-74819518 None:intergenic 10.0%
!!! TCATATTTATTTTATCTAAT+AGG - chr4_2:74820051-74820070 Msa0622390:intron 10.0%
!! ATAAATTTACAAAGAAAAGA+AGG - chr4_2:74818464-74818483 Msa0622390:intron 15.0%
!!! TTTTTGTTTATAATAGTGAT+AGG + chr4_2:74818658-74818677 None:intergenic 15.0%
!!! TCAAATATCACTAATTTTTT+AGG - chr4_2:74818962-74818981 Msa0622390:intron 15.0%
!!! CAAATATCACTAATTTTTTA+GGG - chr4_2:74818963-74818982 Msa0622390:intron 15.0%
!!! AAAATTTTACAAAGAAAATG+AGG + chr4_2:74819118-74819137 None:intergenic 15.0%
!!! TCATTTTCTTTGTAAAATTT+TGG - chr4_2:74819117-74819136 Msa0622390:intron 15.0%
!!! TTTTTGAAAAGGAAAAAAAT+AGG + chr4_2:74819515-74819534 None:intergenic 15.0%
!! AAAATTCATCATTTCAATTT+CGG - chr4_2:74819531-74819550 Msa0622390:intron 15.0%
!! ATTATATTTCATTATGACTT+AGG - chr4_2:74820201-74820220 Msa0622390:intron 15.0%
!!! AACTTTTGTCAAAAAAAAAA+AGG + chr4_2:74820576-74820595 None:intergenic 15.0%
!!! ATTTTAAATATTGTAGTCTA+GGG - chr4_2:74821606-74821625 Msa0622390:intron 15.0%
!! GTCTATTTAAAAAAAAATTC+TGG + chr4_2:74821695-74821714 None:intergenic 15.0%
!! TATATATAGATGATCATATT+TGG + chr4_2:74822254-74822273 None:intergenic 15.0%
!! ATACAATGACATTATAAATA+AGG + chr4_2:74822496-74822515 None:intergenic 15.0%
!! GTATAGTTATCAATTTAATT+AGG - chr4_2:74822512-74822531 Msa0622390:intron 15.0%
!!! ATTTTTCTGAACAAAAACAT+GGG + chr4_2:74818270-74818289 None:intergenic 20.0%
!!! TATTTTTCTGAACAAAAACA+TGG + chr4_2:74818271-74818290 None:intergenic 20.0%
!! CATTTATTAAATGATGTATG+AGG - chr4_2:74818705-74818724 Msa0622390:intron 20.0%
!! GTCAAAAAGTTATCATAAAA+TGG + chr4_2:74818822-74818841 None:intergenic 20.0%
!!! TATTAAGCCTTTTATTAAGA+AGG + chr4_2:74819221-74819240 None:intergenic 20.0%
!!! CTTATTTTTCGTTTTCAATT+TGG - chr4_2:74819259-74819278 Msa0622390:intron 20.0%
!!! GGATTTTTTTTTTCTATGAA+AGG + chr4_2:74819478-74819497 None:intergenic 20.0%
!!! GAAATGATGAATTTTTGAAA+AGG + chr4_2:74819526-74819545 None:intergenic 20.0%
!! AATAACCTAATAGTTTGATT+CGG + chr4_2:74820002-74820021 None:intergenic 20.0%
!!! TTTATTTTATCTAATAGGCT+TGG - chr4_2:74820056-74820075 Msa0622390:intron 20.0%
!!! TTATTTTATCTAATAGGCTT+GGG - chr4_2:74820057-74820076 Msa0622390:intron 20.0%
!! CACAATAAACCATATAAAAA+AGG + chr4_2:74820604-74820623 None:intergenic 20.0%
!! TGTTTCAAAATGACTTAATA+AGG - chr4_2:74820719-74820738 Msa0622390:intron 20.0%
!!! TATCAATTGATAAAGCTTTT+CGG + chr4_2:74821159-74821178 None:intergenic 20.0%
!! CTAGACTACAATATTTAAAA+TGG + chr4_2:74821607-74821626 None:intergenic 20.0%
!!! CATTTTAAATATTGTAGTCT+AGG - chr4_2:74821605-74821624 Msa0622390:intron 20.0%
!!! TTTTAAATATTGTAGTCTAG+GGG - chr4_2:74821607-74821626 Msa0622390:intron 20.0%
!!! GGGTATAATTTTTTTTTTTG+AGG - chr4_2:74822100-74822119 Msa0622390:intron 20.0%
!!! TTTCATATGTAATTTTACCA+GGG + chr4_2:74822182-74822201 None:intergenic 20.0%
!!! ATTTCATATGTAATTTTACC+AGG + chr4_2:74822183-74822202 None:intergenic 20.0%
!! TAGTTATCAATTTAATTAGG+AGG - chr4_2:74822515-74822534 Msa0622390:intron 20.0%
!! AGTTATCAATTTAATTAGGA+GGG - chr4_2:74822516-74822535 Msa0622390:intron 20.0%
!!! ATTTGATATGACTGTTTTTT+GGG + chr4_2:74823078-74823097 None:intergenic 20.0%
! GATGAAACTTGAAAAAAGAA+AGG - chr4_2:74818160-74818179 Msa0622390:CDS 25.0%
! TTCTTTCAAATTCAAAACCA+AGG + chr4_2:74818216-74818235 None:intergenic 25.0%
!!! TGGTTTTGAATTTGAAAGAA+AGG - chr4_2:74818216-74818235 Msa0622390:intron 25.0%
! AAACAATATTATGAAGACAG+TGG + chr4_2:74818294-74818313 None:intergenic 25.0%
!! TTCATAATATTGTTTTCCCT+CGG - chr4_2:74818299-74818318 Msa0622390:intron 25.0%
! AAGAAAAGAAGGTAAAAACA+TGG - chr4_2:74818475-74818494 Msa0622390:intron 25.0%
! AGAAAAGAAGGTAAAAACAT+GGG - chr4_2:74818476-74818495 Msa0622390:intron 25.0%
! CTCAAAAGTTGTCATATAAA+TGG - chr4_2:74819144-74819163 Msa0622390:intron 25.0%
! GTGATTTCCTTCTTAATAAA+AGG - chr4_2:74819211-74819230 Msa0622390:intron 25.0%
!! CAGATTTTGCAAAATACTAA+AGG + chr4_2:74819323-74819342 None:intergenic 25.0%
!! AAAAATAACTTTTCCATGGT+GGG + chr4_2:74819587-74819606 None:intergenic 25.0%
! TTGACCATTAGATTTAAGTA+AGG - chr4_2:74819605-74819624 Msa0622390:intron 25.0%
! TGTTCCTTACTTAAATCTAA+TGG + chr4_2:74819612-74819631 None:intergenic 25.0%
!!! AAGGAACATAGTTTTATCAT+AGG - chr4_2:74819624-74819643 Msa0622390:intron 25.0%
! AAGAAAAAAAATATGGTGCA+GGG + chr4_2:74819652-74819671 None:intergenic 25.0%
! NAAGAAAAAAAATATGGTGC+AGG + chr4_2:74819653-74819672 None:intergenic 25.0%
! TGAATAATGATAGTAGTGAT+AGG + chr4_2:74820544-74820563 None:intergenic 25.0%
! TTGTCAAAAAAAAAAAGGAC+AGG + chr4_2:74820571-74820590 None:intergenic 25.0%
! TAAACCATATAAAAAAGGAC+AGG + chr4_2:74820599-74820618 None:intergenic 25.0%
!!! ATTAAGTCATTTTGAAACAC+TGG + chr4_2:74820718-74820737 None:intergenic 25.0%
!! TGGTGTGTAATTTTATGAAA+AGG - chr4_2:74820875-74820894 Msa0622390:CDS 25.0%
! AAGAAATTGAATATCAAGCT+AGG + chr4_2:74821264-74821283 None:intergenic 25.0%
!!! AACTACTTTTCATATAATGC+AGG - chr4_2:74821286-74821305 Msa0622390:intron 25.0%
! TTATGGCGTTTATTAATTCA+TGG - chr4_2:74821498-74821517 Msa0622390:intron 25.0%
! TATGGCGTTTATTAATTCAT+GGG - chr4_2:74821499-74821518 Msa0622390:intron 25.0%
! ATATCATTGGATAAGTTAGA+GGG - chr4_2:74821767-74821786 Msa0622390:intron 25.0%
!!! ATACGTTTTGATTTTATCAC+TGG + chr4_2:74821854-74821873 None:intergenic 25.0%
!!! TTTAATTTTCCTCTTGCTTT+TGG + chr4_2:74821999-74822018 None:intergenic 25.0%
! TATATTATCCTGCAATAAAG+GGG + chr4_2:74822060-74822079 None:intergenic 25.0%
! GTATATTATCCTGCAATAAA+GGG + chr4_2:74822061-74822080 None:intergenic 25.0%
! AGTATATTATCCTGCAATAA+AGG + chr4_2:74822062-74822081 None:intergenic 25.0%
!!! ATGCTTTAAAATGTTTCCAA+TGG - chr4_2:74822207-74822226 Msa0622390:intron 25.0%
! TCTCTATTAAGAAATCTTGA+TGG - chr4_2:74822284-74822303 Msa0622390:intron 25.0%
! TATCTTGAGAAAAAAAAGCT+GGG - chr4_2:74822358-74822377 Msa0622390:intron 25.0%
!!! TTGTAGACTCTAGAATTATT+CGG + chr4_2:74822430-74822449 None:intergenic 25.0%
!!! TGTGCACAAATTTTGAAATA+CGG - chr4_2:74822455-74822474 Msa0622390:intron 25.0%
!!! TGTATTTTGAACTTACACTT+TGG + chr4_2:74822933-74822952 None:intergenic 25.0%
! AAAGTGTAAGTTCAAAATAC+AGG - chr4_2:74822932-74822951 Msa0622390:intron 25.0%
! AAAATACAGGTAATAGTTCA+GGG - chr4_2:74822945-74822964 Msa0622390:intron 25.0%
! TTAACTTTGAATAGTTCAGT+TGG - chr4_2:74823005-74823024 Msa0622390:intron 25.0%
! TAACTTTGAATAGTTCAGTT+GGG - chr4_2:74823006-74823025 Msa0622390:intron 25.0%
!!! GATTTGATATGACTGTTTTT+TGG + chr4_2:74823079-74823098 None:intergenic 25.0%
TTTGTTGAAAGAATGAACCT+TGG - chr4_2:74818196-74818215 Msa0622390:intron 30.0%
AAAGGAAAAACAGAGAAGAA+AGG - chr4_2:74818234-74818253 Msa0622390:intron 30.0%
!! GACATGTTTTTGTATGTGAT+TGG - chr4_2:74818587-74818606 Msa0622390:CDS 30.0%
AAAAGGCTTAATACATCGTT+TGG - chr4_2:74819228-74819247 Msa0622390:intron 30.0%
! TCTTACGTCGTTTACTATTT+TGG - chr4_2:74819291-74819310 Msa0622390:intron 30.0%
! TGACACATGTCATTTAAGAT+TGG - chr4_2:74819352-74819371 Msa0622390:intron 30.0%
AGGTTATATGAAGATGAAGA+GGG + chr4_2:74819458-74819477 None:intergenic 30.0%
AAGGTTATATGAAGATGAAG+AGG + chr4_2:74819459-74819478 None:intergenic 30.0%
ATTCATCATTTCAATTTCGG+TGG - chr4_2:74819534-74819553 Msa0622390:intron 30.0%
TTCATCATTTCAATTTCGGT+GGG - chr4_2:74819535-74819554 Msa0622390:intron 30.0%
! CAAAAATAACTTTTCCATGG+TGG + chr4_2:74819588-74819607 None:intergenic 30.0%
! GGTCAAAAATAACTTTTCCA+TGG + chr4_2:74819591-74819610 None:intergenic 30.0%
AAAGCAAGGAAATATAACGA+AGG - chr4_2:74819784-74819803 Msa0622390:CDS 30.0%
TGTTTCCGAATCAAACTATT+AGG - chr4_2:74819994-74820013 Msa0622390:intron 30.0%
! GGAAGAAAACTTCTAAAGAT+AGG - chr4_2:74820352-74820371 Msa0622390:intron 30.0%
!!! AGTTCCTGTCCTTTTTTATA+TGG - chr4_2:74820592-74820611 Msa0622390:intron 30.0%
! ACTTTACACTGTTCATGTTT+TGG - chr4_2:74820673-74820692 Msa0622390:intron 30.0%
ACTTTAATTCATGTTTACCG+TGG - chr4_2:74820766-74820785 Msa0622390:CDS 30.0%
GTTTCCATGAATATGCTAAT+TGG - chr4_2:74820824-74820843 Msa0622390:CDS 30.0%
ATGTCCAATTAGCATATTCA+TGG + chr4_2:74820831-74820850 None:intergenic 30.0%
!!! GTGTGTGTAGTTTTATTTGT+TGG - chr4_2:74820855-74820874 Msa0622390:CDS 30.0%
TATGAAAAGGAGAATGACTT+TGG - chr4_2:74820888-74820907 Msa0622390:CDS 30.0%
ATGAAAAGGAGAATGACTTT+GGG - chr4_2:74820889-74820908 Msa0622390:CDS 30.0%
!! TTCACAAGTGTTTTTCAGTT+AGG + chr4_2:74820942-74820961 None:intergenic 30.0%
ATTGAATATCAAGCTAGGTA+AGG + chr4_2:74821259-74821278 None:intergenic 30.0%
! TTTTCATATAATGCAGGCAT+GGG - chr4_2:74821292-74821311 Msa0622390:intron 30.0%
CTGAGAATTTATATTCAACG+AGG + chr4_2:74821372-74821391 None:intergenic 30.0%
TAATCATATTAGTTACCTGC+TGG + chr4_2:74821481-74821500 None:intergenic 30.0%
GCAGGTAACTAATATGATTA+TGG - chr4_2:74821481-74821500 Msa0622390:intron 30.0%
AAAAAATTCTGGCATGACTA+AGG + chr4_2:74821684-74821703 None:intergenic 30.0%
GATATCATTGGATAAGTTAG+AGG - chr4_2:74821766-74821785 Msa0622390:intron 30.0%
AAATAACTACCGTATACATG+AGG - chr4_2:74821958-74821977 Msa0622390:intron 30.0%
ATATTATCCTGCAATAAAGG+GGG + chr4_2:74822059-74822078 None:intergenic 30.0%
ATTGCAGGATAATATACTAC+TGG - chr4_2:74822064-74822083 Msa0622390:intron 30.0%
GTATCTTGAGAAAAAAAAGC+TGG - chr4_2:74822357-74822376 Msa0622390:intron 30.0%
GTAATATTTCTCATGGAATC+AGG + chr4_2:74822697-74822716 None:intergenic 30.0%
GATTCCATGAGAAATATTAC+CGG - chr4_2:74822697-74822716 Msa0622390:intron 30.0%
! TGATTTGGATGCTTTCATTA+TGG - chr4_2:74822789-74822808 Msa0622390:intron 30.0%
TTGTTCGTAGAAGGAAATTT+CGG + chr4_2:74822862-74822881 None:intergenic 30.0%
! GACAAAATTTTGTTCGTAGA+AGG + chr4_2:74822871-74822890 None:intergenic 30.0%
! ACAAAATTTTGTCTCCAAGA+AGG - chr4_2:74822878-74822897 Msa0622390:intron 30.0%
! TTTTGAACTTACACTTTGGT+TGG + chr4_2:74822929-74822948 None:intergenic 30.0%
CAAAATACAGGTAATAGTTC+AGG - chr4_2:74822944-74822963 Msa0622390:intron 30.0%
AAACCATTATGTACTATGCA+AGG + chr4_2:74822976-74822995 None:intergenic 30.0%
TTGACACATTACATAAGGCT+GGG + chr4_2:74818401-74818420 None:intergenic 35.0%
TGCTGTTGACACATTACATA+AGG + chr4_2:74818406-74818425 None:intergenic 35.0%
AAAGAAGGTAAAAACATGGG+CGG - chr4_2:74818479-74818498 Msa0622390:CDS 35.0%
TTATATGATCTCCTACGGTA+GGG + chr4_2:74818533-74818552 None:intergenic 35.0%
TTTATATGATCTCCTACGGT+AGG + chr4_2:74818534-74818553 None:intergenic 35.0%
ACCGTAGGAGATCATATAAA+AGG - chr4_2:74818534-74818553 Msa0622390:CDS 35.0%
! CCCTTTTATATGATCTCCTA+CGG + chr4_2:74818538-74818557 None:intergenic 35.0%
CCGTAGGAGATCATATAAAA+GGG - chr4_2:74818535-74818554 Msa0622390:CDS 35.0%
TATCATATGTTGTGAGTCCA+TGG + chr4_2:74819415-74819434 None:intergenic 35.0%
!! NNAGTTCTGGAGTTAAAGCA+AGG - chr4_2:74819770-74819789 Msa0622390:intron 35.0%
AAGGAAATATAACGAAGGCA+AGG - chr4_2:74819789-74819808 Msa0622390:CDS 35.0%
TCGAAAGGTCTTCAATATTG+TGG - chr4_2:74819821-74819840 Msa0622390:CDS 35.0%
GGCTCGATATTTATTCAATC+AGG - chr4_2:74819907-74819926 Msa0622390:CDS 35.0%
!!! GCTTTTAGGATTACACTTTG+TGG + chr4_2:74819933-74819952 None:intergenic 35.0%
AACCTCAAACAATTTCCTAG+CGG + chr4_2:74820116-74820135 None:intergenic 35.0%
ATGAAGCAAGGAAATCAGAA+AGG + chr4_2:74820169-74820188 None:intergenic 35.0%
TTATGAATAGAATGCAGTGC+AGG - chr4_2:74820258-74820277 Msa0622390:intron 35.0%
CTATTAATGCAAGAGACTGA+AGG + chr4_2:74820408-74820427 None:intergenic 35.0%
!!! ATGTTTTGGTTCCAACTTGA+AGG - chr4_2:74820687-74820706 Msa0622390:intron 35.0%
AAAACACTTGTGAAGCTGTT+TGG - chr4_2:74820948-74820967 Msa0622390:CDS 35.0%
AAACACTTGTGAAGCTGTTT+GGG - chr4_2:74820949-74820968 Msa0622390:CDS 35.0%
! ACTGTTTTCATAAGCTTTCC+TGG + chr4_2:74821020-74821039 None:intergenic 35.0%
CATAAGCACTTAAATGTTGC+AGG - chr4_2:74821078-74821097 Msa0622390:intron 35.0%
! CTTTTCATATAATGCAGGCA+TGG - chr4_2:74821291-74821310 Msa0622390:intron 35.0%
TTTCATATAATGCAGGCATG+GGG - chr4_2:74821293-74821312 Msa0622390:intron 35.0%
ATTCTCAGAGTTATGTGACA+TGG - chr4_2:74821384-74821403 Msa0622390:CDS 35.0%
TTATGTGACATGGATGACTT+GGG - chr4_2:74821394-74821413 Msa0622390:CDS 35.0%
!!! CCACATCTTTTTAGCTCAAT+AGG + chr4_2:74821739-74821758 None:intergenic 35.0%
CCTATTGAGCTAAAAAGATG+TGG - chr4_2:74821736-74821755 Msa0622390:intron 35.0%
! TGTGGAGAGTATGATATCAT+TGG - chr4_2:74821754-74821773 Msa0622390:intron 35.0%
TTAGAGGGAAGGTAAAATTC+AGG - chr4_2:74821782-74821801 Msa0622390:intron 35.0%
TAGAGGGAAGGTAAAATTCA+GGG - chr4_2:74821783-74821802 Msa0622390:intron 35.0%
TACAACGTGCCGTATATATA+CGG - chr4_2:74821920-74821939 Msa0622390:intron 35.0%
ATGGGTGTACCGTATATATA+CGG + chr4_2:74821932-74821951 None:intergenic 35.0%
TATATATACGGTACACCCAT+AGG - chr4_2:74821932-74821951 Msa0622390:intron 35.0%
!! CGGTAGTTATTTTCACCTAT+GGG + chr4_2:74821950-74821969 None:intergenic 35.0%
!! ACGGTAGTTATTTTCACCTA+TGG + chr4_2:74821951-74821970 None:intergenic 35.0%
!! GACTTTTGATTGTTTTGTGC+AGG + chr4_2:74822022-74822041 None:intergenic 35.0%
ACTACTGGATAGTATACTAC+TGG - chr4_2:74822079-74822098 Msa0622390:intron 35.0%
CTACTGGATAGTATACTACT+GGG - chr4_2:74822080-74822099 Msa0622390:intron 35.0%
! ATATGTAATTTTACCAGGGC+CGG + chr4_2:74822178-74822197 None:intergenic 35.0%
!! AGAAATTTTGCTGTGACTTG+AGG - chr4_2:74822392-74822411 Msa0622390:intron 35.0%
ATATTTCTCATGGAATCAGG+TGG + chr4_2:74822694-74822713 None:intergenic 35.0%
! AACCATGTTTTTCTTCGATC+CGG + chr4_2:74822719-74822738 None:intergenic 35.0%
CATGGTTGATTATTCTAGTG+AGG - chr4_2:74822732-74822751 Msa0622390:intron 35.0%
! TGAGGATGATGATAATGATG+TGG - chr4_2:74822750-74822769 Msa0622390:intron 35.0%
! TTTTGTCTCCAAGAAGGATA+TGG - chr4_2:74822884-74822903 Msa0622390:intron 35.0%
AATAGTTCAGTTGGGCTATT+GGG - chr4_2:74823014-74823033 Msa0622390:intron 35.0%
! AAAATACGATTTTGCCCCCT+CGG + chr4_2:74818368-74818387 None:intergenic 40.0%
GTTGACACATTACATAAGGC+TGG + chr4_2:74818402-74818421 None:intergenic 40.0%
TATATGATCTCCTACGGTAG+GGG + chr4_2:74818532-74818551 None:intergenic 40.0%
GACAATCTTCTCTCATACTC+AGG - chr4_2:74818839-74818858 Msa0622390:intron 40.0%
TAAGATTGGCGATCAACAGT+TGG - chr4_2:74819366-74819385 Msa0622390:intron 40.0%
AAAGCACACATAGCATACCA+TGG - chr4_2:74819395-74819414 Msa0622390:intron 40.0%
CTTCAAGCAATGCAAGTGTT+TGG + chr4_2:74819865-74819884 None:intergenic 40.0%
ACTTGCATTGCTTGAAGCTA+AGG - chr4_2:74819868-74819887 Msa0622390:CDS 40.0%
TAAGGCGAATAGATATCAGC+AGG - chr4_2:74819886-74819905 Msa0622390:CDS 40.0%
ATCCTAAAAGCTGTGCTAGT+TGG - chr4_2:74819942-74819961 Msa0622390:intron 40.0%
TACCGCTAGGAAATTGTTTG+AGG - chr4_2:74820111-74820130 Msa0622390:intron 40.0%
TTGCTGAGTTCTATGAAGCA+AGG + chr4_2:74820181-74820200 None:intergenic 40.0%
GTCCTAAAAATAGGTTCGCT+TGG - chr4_2:74820284-74820303 Msa0622390:intron 40.0%
!! TGCCAAGCGAACCTATTTTT+AGG + chr4_2:74820289-74820308 None:intergenic 40.0%
!!! GGCATTTTTGAAGCTAACCT+GGG - chr4_2:74820316-74820335 Msa0622390:intron 40.0%
!! GTTCAAGAGAGCATCTGAAT+TGG - chr4_2:74820465-74820484 Msa0622390:intron 40.0%
!! CAACCTGTTTGGTTTGTAAG+TGG - chr4_2:74820499-74820518 Msa0622390:intron 40.0%
AAGCCACTTACAAACCAAAC+AGG + chr4_2:74820505-74820524 None:intergenic 40.0%
TTGTAAGTGGCTTACTCAGT+TGG - chr4_2:74820512-74820531 Msa0622390:intron 40.0%
AATGAGAAGTGAGCTTGACA+TGG - chr4_2:74820624-74820643 Msa0622390:intron 40.0%
CATCAATCAGAATCCAGAGA+AGG + chr4_2:74820805-74820824 None:intergenic 40.0%
TCAAATAAGTCAAGCCAACC+AGG + chr4_2:74820915-74820934 None:intergenic 40.0%
AAGCTGTTTGGGAGAGTTTA+TGG - chr4_2:74820960-74820979 Msa0622390:CDS 40.0%
CACTTAAATGTTGCAGGCTT+GGG - chr4_2:74821084-74821103 Msa0622390:intron 40.0%
ACTTAAATGTTGCAGGCTTG+GGG - chr4_2:74821085-74821104 Msa0622390:intron 40.0%
GTTATGTGACATGGATGACT+TGG - chr4_2:74821393-74821412 Msa0622390:CDS 40.0%
TAGTTACCTGCTGGAAGTAA+AGG + chr4_2:74821472-74821491 None:intergenic 40.0%
TTGTAGTCTAGGGGTGAAAA+AGG - chr4_2:74821616-74821635 Msa0622390:intron 40.0%
TGTAGTCTAGGGGTGAAAAA+GGG - chr4_2:74821617-74821636 Msa0622390:intron 40.0%
ACCTATAGTCAATCTACGTC+AGG - chr4_2:74821658-74821677 Msa0622390:intron 40.0%
CATTGGATAAGTTAGAGGGA+AGG - chr4_2:74821771-74821790 Msa0622390:intron 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG + chr4_2:74821988-74822007 None:intergenic 40.0%
!!! TTCCTCTTGCTTTTGGTGTT+AGG + chr4_2:74821992-74822011 None:intergenic 40.0%
!!! TTTTTTTTGAGGCCCATCCT+TGG - chr4_2:74822111-74822130 Msa0622390:intron 40.0%
!!! TTTTTTTGAGGCCCATCCTT+GGG - chr4_2:74822112-74822131 Msa0622390:intron 40.0%
GAAAGAAGTTGCTTGACCAT+TGG + chr4_2:74822226-74822245 None:intergenic 40.0%
AGGGCTGCTAACATTTGAAA+TGG - chr4_2:74822535-74822554 Msa0622390:intron 40.0%
AAGTTGTAGATGATGCTTCG+TGG - chr4_2:74822584-74822603 Msa0622390:intron 40.0%
AGTTGTAGATGATGCTTCGT+GGG - chr4_2:74822585-74822604 Msa0622390:intron 40.0%
GTGGCACATTGAACGAATTT+GGG + chr4_2:74822675-74822694 None:intergenic 40.0%
CGATCCGGTAATATTTCTCA+TGG + chr4_2:74822704-74822723 None:intergenic 40.0%
TACCGGATCGAAGAAAAACA+TGG - chr4_2:74822714-74822733 Msa0622390:intron 40.0%
TGGATGCTTTCATTATGGAC+AGG - chr4_2:74822794-74822813 Msa0622390:intron 40.0%
GAGCCTTGCATAGTACATAA+TGG - chr4_2:74822970-74822989 Msa0622390:intron 40.0%
GAATAGTTCAGTTGGGCTAT+TGG - chr4_2:74823013-74823032 Msa0622390:intron 40.0%
!!! ATGACTGTTTTTTGGGTCCA+AGG + chr4_2:74823071-74823090 None:intergenic 40.0%
TCTTGTCCTTGTTCAGCAAA+GGG + chr4_2:74823121-74823140 None:intergenic 40.0%
TTCTTGTCCTTGTTCAGCAA+AGG + chr4_2:74823122-74823141 None:intergenic 40.0%
AAGAGTCATAACCCAGTTGG+AGG - chr4_2:74818123-74818142 Msa0622390:CDS 45.0%
TCATAACCCAGTTGGAGGAA+GGG - chr4_2:74818128-74818147 Msa0622390:CDS 45.0%
CAGCCGGATTTCAAATTCCT+CGG - chr4_2:74818332-74818351 Msa0622390:CDS 45.0%
! CTGCCGAGGAATTTGAAATC+CGG + chr4_2:74818338-74818357 None:intergenic 45.0%
! CAATTTCGGTGGGTTTAGCA+TGG - chr4_2:74819545-74819564 Msa0622390:intron 45.0%
! AGGATAGTTGTTTCCCACCA+TGG - chr4_2:74819571-74819590 Msa0622390:intron 45.0%
GCAAGGAATCTGCTTTCGAA+AGG - chr4_2:74819806-74819825 Msa0622390:CDS 45.0%
! AGCCAACTAGCACAGCTTTT+AGG + chr4_2:74819947-74819966 None:intergenic 45.0%
AAACAATGTCGCTCGGTTGA+TGG + chr4_2:74819979-74819998 None:intergenic 45.0%
GATTCGGAAACAATGTCGCT+CGG + chr4_2:74819986-74820005 None:intergenic 45.0%
CTAATAGGCTTGGGCTCAAA+TGG - chr4_2:74820066-74820085 Msa0622390:intron 45.0%
TGCAGGCGAGTCCTAAAAAT+AGG - chr4_2:74820275-74820294 Msa0622390:intron 45.0%
!!! GGGCATTTTTGAAGCTAACC+TGG - chr4_2:74820315-74820334 Msa0622390:intron 45.0%
TAACCTGGGCAAGATTGACA+AGG - chr4_2:74820330-74820349 Msa0622390:intron 45.0%
AACCTGGGCAAGATTGACAA+GGG - chr4_2:74820331-74820350 Msa0622390:intron 45.0%
! TAGGCCATGCTCTAAATCCA+AGG - chr4_2:74820371-74820390 Msa0622390:intron 45.0%
! AGGCCATGCTCTAAATCCAA+GGG - chr4_2:74820372-74820391 Msa0622390:intron 45.0%
! CATCCCTTGGATTTAGAGCA+TGG + chr4_2:74820378-74820397 None:intergenic 45.0%
!! AACCAAACAGGTTGATGCCT+GGG + chr4_2:74820493-74820512 None:intergenic 45.0%
!! AAACCAAACAGGTTGATGCC+TGG + chr4_2:74820494-74820513 None:intergenic 45.0%
!! CACTGGTTCTTCCTTCAAGT+TGG + chr4_2:74820701-74820720 None:intergenic 45.0%
AAGGATGAGAGGAAAAGCCA+CGG + chr4_2:74820786-74820805 None:intergenic 45.0%
! CTTTTCCTCTCATCCTTCTC+TGG - chr4_2:74820789-74820808 Msa0622390:CDS 45.0%
AGAATCCAGAGAAGGATGAG+AGG + chr4_2:74820797-74820816 None:intergenic 45.0%
!!! AGCTTTTTCAGCTTCTCTCC+AGG - chr4_2:74820999-74821018 Msa0622390:intron 45.0%
GCACTTAAATGTTGCAGGCT+TGG - chr4_2:74821083-74821102 Msa0622390:intron 45.0%
TCATATGCATGCATGTCACC+TGG + chr4_2:74821210-74821229 None:intergenic 45.0%
TCGTAACCTTTACTTCCAGC+AGG - chr4_2:74821463-74821482 Msa0622390:intron 45.0%
GATTGACTATAGGTCCCCAT+CGG + chr4_2:74821652-74821671 None:intergenic 45.0%
GCCTGACGTAGATTGACTAT+AGG + chr4_2:74821662-74821681 None:intergenic 45.0%
GTGGGGATTCCTCATGTATA+CGG + chr4_2:74821970-74821989 None:intergenic 45.0%
!!! CTTGCTTTTGGTGTTAGGTG+GGG + chr4_2:74821987-74822006 None:intergenic 45.0%
!!! CTCTTGCTTTTGGTGTTAGG+TGG + chr4_2:74821989-74822008 None:intergenic 45.0%
CACCTAACACCAAAAGCAAG+AGG - chr4_2:74821987-74822006 Msa0622390:intron 45.0%
!!! TTTTTTGAGGCCCATCCTTG+GGG - chr4_2:74822113-74822132 Msa0622390:intron 45.0%
! AGATGATGCTTCGTGGGTTA+TGG - chr4_2:74822591-74822610 Msa0622390:intron 45.0%
! GATGATGCTTCGTGGGTTAT+GGG - chr4_2:74822592-74822611 Msa0622390:intron 45.0%
TCCTCAAACTGTCAATGGCA+GGG + chr4_2:74822636-74822655 None:intergenic 45.0%
GAGTCTCCTCAAACTGTCAA+TGG + chr4_2:74822641-74822660 None:intergenic 45.0%
TTTGAGGAGACTCCTGAAGA+TGG - chr4_2:74822648-74822667 Msa0622390:intron 45.0%
ACGAATTTGGGTCCATCTTC+AGG + chr4_2:74822663-74822682 None:intergenic 45.0%
GGTGGCACATTGAACGAATT+TGG + chr4_2:74822676-74822695 None:intergenic 45.0%
CGATGACAGCGAGTTTGATT+TGG - chr4_2:74822774-74822793 Msa0622390:intron 45.0%
ATCCATAGATGTGTCCAAGC+TGG - chr4_2:74822819-74822838 Msa0622390:intron 45.0%
TTCCAGCTTGGACACATCTA+TGG + chr4_2:74822824-74822843 None:intergenic 45.0%
TTCCAGTTGAACTTCCAGCT+TGG + chr4_2:74822836-74822855 None:intergenic 45.0%
TGGTTGGCAGTTCTACTACT+TGG + chr4_2:74822913-74822932 None:intergenic 45.0%
!! TTGAAGCTGTTTTGCAGCCT+TGG - chr4_2:74823051-74823070 Msa0622390:intron 45.0%
ATCTTGCCCTTTGCTGAACA+AGG - chr4_2:74823112-74823131 Msa0622390:intron 45.0%
!! NNNNNNNAAGAAAAAAAATA+TGG + chr4_2:74819659-74819678 None:intergenic 5.0%
GTCATAACCCAGTTGGAGGA+AGG - chr4_2:74818127-74818146 Msa0622390:CDS 50.0%
CTTCTTCCCTTCCTCCAACT+GGG + chr4_2:74818137-74818156 None:intergenic 50.0%
AAAAACATGGGCGGCGTCTA+CGG - chr4_2:74818488-74818507 Msa0622390:CDS 50.0%
! CGGTGGGTTTAGCATGGAAA+AGG - chr4_2:74819551-74819570 Msa0622390:intron 50.0%
ATAGGCTTGGGCTCAAATGG+AGG - chr4_2:74820069-74820088 Msa0622390:intron 50.0%
AGGAAAACTCTCGTACCGCT+AGG - chr4_2:74820098-74820117 Msa0622390:intron 50.0%
ATAGGTTCGCTTGGCATGTC+TGG - chr4_2:74820293-74820312 Msa0622390:intron 50.0%
TAGGTTCGCTTGGCATGTCT+GGG - chr4_2:74820294-74820313 Msa0622390:intron 50.0%
TTCCCTTGTCAATCTTGCCC+AGG + chr4_2:74820336-74820355 None:intergenic 50.0%
TGAAGGAGAACAGCATCCCT+TGG + chr4_2:74820391-74820410 None:intergenic 50.0%
GAGCATCTGAATTGGATCCC+AGG - chr4_2:74820473-74820492 Msa0622390:intron 50.0%
ATCCCAGGCATCAACCTGTT+TGG - chr4_2:74820488-74820507 Msa0622390:intron 50.0%
AAGGAGAATGACTTTGGGCC+TGG - chr4_2:74820894-74820913 Msa0622390:CDS 50.0%
AGAATGACTTTGGGCCTGGT+TGG - chr4_2:74820898-74820917 Msa0622390:CDS 50.0%
AAATGTTGCAGGCTTGGGGT+TGG - chr4_2:74821089-74821108 Msa0622390:intron 50.0%
TTGGGGTTGGATGGAATGGA+AGG - chr4_2:74821102-74821121 Msa0622390:intron 50.0%
GGTTGGATGGAATGGAAGGA+AGG - chr4_2:74821106-74821125 Msa0622390:intron 50.0%
! GCAGAGGGTTGGCAATCTTT+CGG - chr4_2:74821325-74821344 Msa0622390:CDS 50.0%
! ATGGATGACTTGGGCATCAC+TGG - chr4_2:74821403-74821422 Msa0622390:CDS 50.0%
GCATCACTGGAGGAAGATCA+AGG - chr4_2:74821416-74821435 Msa0622390:CDS 50.0%
CGAATTTCTTCAGCACGCAC+AGG + chr4_2:74821446-74821465 None:intergenic 50.0%
!! TCGGCTCTGGGAATGAAAAG+AGG - chr4_2:74821828-74821847 Msa0622390:intron 50.0%
GTTTGCACCCCCTTTATTGC+AGG - chr4_2:74822049-74822068 Msa0622390:intron 50.0%
!!! TTTTTGAGGCCCATCCTTGG+GGG - chr4_2:74822114-74822133 Msa0622390:intron 50.0%
ACCCTGCCATTGACAGTTTG+AGG - chr4_2:74822632-74822651 Msa0622390:intron 50.0%
CTCCTCAAACTGTCAATGGC+AGG + chr4_2:74822637-74822656 None:intergenic 50.0%
GTCCAAGCTGGAAGTTCAAC+TGG - chr4_2:74822831-74822850 Msa0622390:intron 50.0%
CTTGGTCGCCATATCCTTCT+TGG + chr4_2:74822895-74822914 None:intergenic 50.0%
CCTTCTTCCCTTCCTCCAAC+TGG + chr4_2:74818138-74818157 None:intergenic 55.0%
CCAGTTGGAGGAAGGGAAGA+AGG - chr4_2:74818135-74818154 Msa0622390:CDS 55.0%
CTACGGTAGGAGAGGGCAAT+AGG - chr4_2:74818505-74818524 Msa0622390:CDS 55.0%
GGCTCAAATGGAGGTGGAAC+AGG - chr4_2:74820078-74820097 Msa0622390:intron 55.0%
AGGTTCGCTTGGCATGTCTG+GGG - chr4_2:74820295-74820314 Msa0622390:intron 55.0%
AGGCTTGGGGTTGGATGGAA+TGG - chr4_2:74821098-74821117 Msa0622390:intron 55.0%
!! CGAACAGTGAGAGTGCTGCA+AGG - chr4_2:74821179-74821198 Msa0622390:intron 55.0%
! AATGCAGGCATGGGGTGTTC+TGG - chr4_2:74821301-74821320 Msa0622390:CDS 55.0%
!! ATGGGGTGTTCTGGAGCAGA+GGG - chr4_2:74821310-74821329 Msa0622390:CDS 55.0%
! GATGACTTGGGCATCACTGG+AGG - chr4_2:74821406-74821425 Msa0622390:CDS 55.0%
TGGTCTGCGAACAAGTCACG+AGG + chr4_2:74821587-74821606 None:intergenic 55.0%
AAAAGGGTCAGACCGACCGA+TGG - chr4_2:74821633-74821652 Msa0622390:intron 55.0%
AAAGGGTCAGACCGACCGAT+GGG - chr4_2:74821634-74821653 Msa0622390:intron 55.0%
GACTATAGGTCCCCATCGGT+CGG + chr4_2:74821648-74821667 None:intergenic 55.0%
AGCCTCCGAATTCTCAGGGA+CGG + chr4_2:74821809-74821828 None:intergenic 55.0%
TCCCTGAGAATTCGGAGGCT+CGG - chr4_2:74821809-74821828 Msa0622390:intron 55.0%
GCAAACAGCTCAACCGAGCT+GGG + chr4_2:74822143-74822162 None:intergenic 55.0%
TGCAAACAGCTCAACCGAGC+TGG + chr4_2:74822144-74822163 None:intergenic 55.0%
CGGCTGCAGTTAACTGCCGA+GGG + chr4_2:74818318-74818337 None:intergenic 60.0%
CCTCGGCAGTTAACTGCAGC+CGG - chr4_2:74818316-74818335 Msa0622390:intron 60.0%
TCCTCGGCAGTTAACTGCCG+AGG - chr4_2:74818348-74818367 Msa0622390:CDS 60.0%
CCTCGGCAGTTAACTGCCGA+GGG - chr4_2:74818349-74818368 Msa0622390:CDS 60.0%
CTCGGCAGTTAACTGCCGAG+GGG - chr4_2:74818350-74818369 Msa0622390:CDS 60.0%
TCGGCAGTTAACTGCCGAGG+GGG - chr4_2:74818351-74818370 Msa0622390:CDS 60.0%
GGCAATAGGTCCCCTACCGT+AGG - chr4_2:74818519-74818538 Msa0622390:CDS 60.0%
GGCTTGGGCTCAAATGGAGG+TGG - chr4_2:74820072-74820091 Msa0622390:intron 60.0%
GTTGCAGGCTTGGGGTTGGA+TGG - chr4_2:74821093-74821112 Msa0622390:intron 60.0%
! GAGTGCTGCAAGGTGTCTCC+AGG - chr4_2:74821189-74821208 Msa0622390:intron 60.0%
!! CATGGGGTGTTCTGGAGCAG+AGG - chr4_2:74821309-74821328 Msa0622390:CDS 60.0%
!! GGTGTTCTGGAGCAGAGGGT+TGG - chr4_2:74821314-74821333 Msa0622390:CDS 60.0%
AAGGGTCAGACCGACCGATG+GGG - chr4_2:74821635-74821654 Msa0622390:intron 60.0%
CAGGGCCGTCCCTGAGAATT+CGG - chr4_2:74821801-74821820 Msa0622390:intron 60.0%
GCCGAGCCTCCGAATTCTCA+GGG + chr4_2:74821813-74821832 None:intergenic 60.0%
AGCCGAGCCTCCGAATTCTC+AGG + chr4_2:74821814-74821833 None:intergenic 60.0%
AGAATTCGGAGGCTCGGCTC+TGG - chr4_2:74821815-74821834 Msa0622390:intron 60.0%
GAATTCGGAGGCTCGGCTCT+GGG - chr4_2:74821816-74821835 Msa0622390:intron 60.0%
GAGCTGTTTGCACCCCCTCA+AGG - chr4_2:74822152-74822171 Msa0622390:intron 60.0%
TGTTTGCACCCCCTCAAGGC+CGG - chr4_2:74822156-74822175 Msa0622390:intron 60.0%
TTTACCAGGGCCGGCCTTGA+GGG + chr4_2:74822169-74822188 None:intergenic 60.0%
! TTTTACCAGGGCCGGCCTTG+AGG + chr4_2:74822170-74822189 None:intergenic 60.0%
CCGGCTGCAGTTAACTGCCG+AGG + chr4_2:74818319-74818338 None:intergenic 65.0%
CCCTCGGCAGTTAACTGCCG+AGG + chr4_2:74818352-74818371 None:intergenic 65.0%
ACATGGGCGGCGTCTACGGT+AGG - chr4_2:74818492-74818511 Msa0622390:CDS 65.0%
GCGGCGTCTACGGTAGGAGA+GGG - chr4_2:74818498-74818517 Msa0622390:CDS 65.0%
GGCCGTCCCTGAGAATTCGG+AGG - chr4_2:74821804-74821823 Msa0622390:intron 65.0%
TTGAGGCCCATCCTTGGGGG+AGG - chr4_2:74822117-74822136 Msa0622390:intron 65.0%
TTACCAGGGCCGGCCTTGAG+GGG + chr4_2:74822168-74822187 None:intergenic 65.0%
GGCGGCGTCTACGGTAGGAG+AGG - chr4_2:74818497-74818516 Msa0622390:CDS 70.0%
GCTGGGCCTCCCCCAAGGAT+GGG + chr4_2:74822126-74822145 None:intergenic 70.0%
AGCTGGGCCTCCCCCAAGGA+TGG + chr4_2:74822127-74822146 None:intergenic 70.0%
TCCTTGGGGGAGGCCCAGCT+CGG - chr4_2:74822127-74822146 Msa0622390:intron 70.0%
TACCAGGGCCGGCCTTGAGG+GGG + chr4_2:74822167-74822186 None:intergenic 70.0%
ACCGAGCTGGGCCTCCCCCA+AGG + chr4_2:74822131-74822150 None:intergenic 75.0%
! CACCCCCTCAAGGCCGGCCC+TGG - chr4_2:74822162-74822181 Msa0622390:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 74818121 74823142 74818121 ID=Msa0622390;Name=Msa0622390
chr4_2 mRNA 74818121 74823142 74818121 ID=Msa0622390-mRNA-1;Parent=Msa0622390;Name=Msa0622390-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|0.87|0.57|0.37|8|0|352
chr4_2 exon 74823137 74823142 74823137 ID=Msa0622390-mRNA-1:exon:22696;Parent=Msa0622390-mRNA-1
chr4_2 exon 74821296 74821457 74821296 ID=Msa0622390-mRNA-1:exon:22695;Parent=Msa0622390-mRNA-1
chr4_2 exon 74821131 74821190 74821131 ID=Msa0622390-mRNA-1:exon:22694;Parent=Msa0622390-mRNA-1
chr4_2 exon 74820750 74820995 74820750 ID=Msa0622390-mRNA-1:exon:22693;Parent=Msa0622390-mRNA-1
chr4_2 exon 74819779 74819955 74819779 ID=Msa0622390-mRNA-1:exon:22692;Parent=Msa0622390-mRNA-1
chr4_2 exon 74818478 74818686 74818478 ID=Msa0622390-mRNA-1:exon:22691;Parent=Msa0622390-mRNA-1
chr4_2 exon 74818327 74818447 74818327 ID=Msa0622390-mRNA-1:exon:22690;Parent=Msa0622390-mRNA-1
chr4_2 exon 74818121 74818195 74818121 ID=Msa0622390-mRNA-1:exon:22689;Parent=Msa0622390-mRNA-1
chr4_2 CDS 74823137 74823142 74823137 ID=Msa0622390-mRNA-1:cds;Parent=Msa0622390-mRNA-1
chr4_2 CDS 74821296 74821457 74821296 ID=Msa0622390-mRNA-1:cds;Parent=Msa0622390-mRNA-1
chr4_2 CDS 74821131 74821190 74821131 ID=Msa0622390-mRNA-1:cds;Parent=Msa0622390-mRNA-1
chr4_2 CDS 74820750 74820995 74820750 ID=Msa0622390-mRNA-1:cds;Parent=Msa0622390-mRNA-1
chr4_2 CDS 74819779 74819955 74819779 ID=Msa0622390-mRNA-1:cds;Parent=Msa0622390-mRNA-1
chr4_2 CDS 74818478 74818686 74818478 ID=Msa0622390-mRNA-1:cds;Parent=Msa0622390-mRNA-1
chr4_2 CDS 74818327 74818447 74818327 ID=Msa0622390-mRNA-1:cds;Parent=Msa0622390-mRNA-1
chr4_2 CDS 74818121 74818195 74818121 ID=Msa0622390-mRNA-1:cds;Parent=Msa0622390-mRNA-1
Gene Sequence

>Msa0622390

AAAAGAGCAAGGAATCTGCTTTCGAAAGGTCTTCAATATTGTGGACAGAATGAGTACATATACCAAACACTTGCATTGCTTGAAGCTAAGGCGAATAGATATCAGCAGGCTCGATATTTATTCAATCAGGCCACAAAGTGTAATCCTAAAAGCTGTGCTAGTTGGCTTGCTTGGGCTCAAATGGAGGTGGAACAGGAAAACTCTCGTACCGCTAGGAAATTGTTTGAGAATGCAGTGCAGGCGAGTCCTAAAAATAGGTTCGCTTGGCATGTCTGGGGCATTTTTGAAGCTAACCTGGGCAAGATTGACAAGGGAAGAAAACTTCTAAAGATAGGCCATGCTCTAAATCCAAGGGATGCTGTTCTCCTTCAGTCTCTTGCATTAATAGAATACAAACACTCAAGTGCTAATCGTGCTCGTGTTTTGTTCAAGAGAGCATCTGAATTGGATCCCAGGCATCAACCTGTTTGGTTTGCATGGGGTGTTCTGGAGCAGAGGGTTGGCAATCTTTCGGCTGCTCGAAGATTGTTTAGATCCTCGTTGAATATAAATTCTCAGAGTTATGTGACATGGATGACTTGGGCATCACTGGAGGAAGATCAAGGAAATCCTGTGCGTGCTGAAGAAATTCGTAACCTTTACTTCCAGCAGCGCACAGAAGTTGTAGATGATGCTTCGTGGGTTATGGGATTCTTAGATATTTTAGACCCTGCCATTGACAGTTTGAGGAGACTCCTGAAGATGGACCCAAATTCGTTCAATGTGCCACCTGATTCCATGAGAAATATTACCGGATCGAAGAAAAACATGGTTGATTATTCTAGTGAGGATGATGATAATGATGTGGACGATGACAGCGAGTTATCCATAGATGTGTCCAAGCTGGAAGTTCAACTGGAAACGCCGAAATTTCCTTCTACGAACAAAATTTTGTCTCCAAGAAGGATATGGCGACCAAGTAGTAGAACTGCCAACCAAAGTCCTTGGACCCAAAAAACAGTCATATCAAATCGAACACATGAGATATCTTGCCCTTTGCTGAACAAGGACAAGAAA

Protein sequence

>Msa0622390

KRARNLLSKGLQYCGQNEYIYQTLALLEAKANRYQQARYLFNQATKCNPKSCASWLAWAQMEVEQENSRTARKLFENAVQASPKNRFAWHVWGIFEANLGKIDKGRKLLKIGHALNPRDAVLLQSLALIEYKHSSANRARVLFKRASELDPRHQPVWFAWGVLEQRVGNLSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNPVRAEEIRNLYFQQRTEVVDDASWVMGFLDILDPAIDSLRRLLKMDPNSFNVPPDSMRNITGSKKNMVDYSSEDDDNDVDDDSELSIDVSKLEVQLETPKFPSTNKILSPRRIWRPSSRTANQSPWTQKTVISNRTHEISCPLLNKDKK