AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0027030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027030 MtrunA17_Chr1g0182941 91.592 333 15 3 1 320 1 333 0.0 585
Msa0027030 MtrunA17_Chr7g0269121 32.824 262 143 5 84 312 183 444 8.03e-35 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027030 AT4G28740.1 61.438 306 94 8 29 320 52 347 7.54e-123 356
Msa0027030 AT1G02910.1 31.298 262 147 4 84 312 190 451 4.35e-25 105
Msa0027030 AT1G02910.2 34.932 146 83 2 84 217 190 335 1.08e-11 65.5

Find 104 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAGCCTCTTGTGCATTCT+TGG 0.158034 1_1:+51227498 None:intergenic
AATCTAATTCTTCTCAAATT+AGG 0.208211 1_1:-51228680 Msa0027030:intron
TCTCCTTAGTTGGATGATTA+TGG 0.247045 1_1:+51229001 None:intergenic
AGAAGAATTAGATTGTTTAT+TGG 0.275303 1_1:+51228689 None:intergenic
GGATGGAAATTTGCCTGCTT+TGG 0.289463 1_1:-51227275 Msa0027030:CDS
AGGGCTGAACTCCTTGTATA+AGG 0.300210 1_1:+51226530 None:intergenic
TGAGGTTCTATCTCCCTTTC+GGG 0.303519 1_1:-51227713 Msa0027030:CDS
ATAGCAATCTCACAACTAAT+TGG 0.308590 1_1:-51227634 Msa0027030:CDS
CTGCCATAGTCTCTTCCTTC+TGG 0.310842 1_1:+51227210 None:intergenic
GTGAGGTTCTATCTCCCTTT+CGG 0.318617 1_1:-51227714 Msa0027030:CDS
TAAAATCATATATTTAGTTT+AGG 0.319874 1_1:-51226427 Msa0027030:three_prime_UTR
TGAGGAACTGAACATAAAAT+TGG 0.327285 1_1:+51228791 None:intergenic
GCCGAGACCCTTGAGAATTT+CGG 0.328655 1_1:+51227576 None:intergenic
AGTTTCACTTTCTTTGCATA+TGG 0.343844 1_1:-51228945 Msa0027030:five_prime_UTR
ACCATGACATTAACAACGTT+TGG 0.352424 1_1:-51228891 Msa0027030:CDS
ACATTTCACAGAAAGTCTTT+TGG 0.354924 1_1:-51227329 Msa0027030:CDS
GAGATGATCCTTCAAGAGTA+TGG 0.355797 1_1:+51226572 None:intergenic
GACCACTCGGAGGTGATAAC+TGG 0.362239 1_1:+51227181 None:intergenic
TATCTCCCTTTCGGGCAGTT+AGG 0.390845 1_1:-51227705 Msa0027030:CDS
AAATTTCCATCCGTTACTAA+TGG 0.393889 1_1:+51227286 None:intergenic
CCAGTCCAGATTCCCTTTAC+CGG 0.394427 1_1:+51226636 None:intergenic
TGCACAATTACCGCCGGTAA+AGG 0.394914 1_1:-51226649 Msa0027030:CDS
CGCTTGGATGGTCGAGTTCG+TGG 0.397559 1_1:-51226708 Msa0027030:CDS
GGGCTGAACTCCTTGTATAA+GGG 0.402759 1_1:+51226531 None:intergenic
TACCGCCGGTAAAGGGAATC+TGG 0.408305 1_1:-51226641 Msa0027030:CDS
CCACCAGAAGGAAGAGACTA+TGG 0.419742 1_1:-51227213 Msa0027030:CDS
TTTGTTGCAAGTGCTTCTCT+CGG 0.428816 1_1:-51227664 Msa0027030:CDS
GCACAATTACCGCCGGTAAA+GGG 0.429086 1_1:-51226648 Msa0027030:CDS
ATGAAACATGGAGGTGGTGT+TGG 0.435397 1_1:+51228828 None:intergenic
AACTACTGAAACATTCACTT+TGG 0.441246 1_1:-51228920 Msa0027030:five_prime_UTR
TAGTGGGAACAGAAGATCTT+TGG 0.442205 1_1:+51228727 None:intergenic
GACTCGGTTATGAAGGATGC+TGG 0.449765 1_1:+51227367 None:intergenic
ATCTGGACTGGCCTACTAGA+TGG 0.452164 1_1:-51226624 Msa0027030:CDS
TCCGAAATTCTCAAGGGTCT+CGG 0.462525 1_1:-51227577 Msa0027030:CDS
TGAAACATGGAGGTGGTGTT+GGG 0.464979 1_1:+51228829 None:intergenic
CACACATCTATCTCCTTAGT+TGG 0.466055 1_1:+51228991 None:intergenic
GGAAGCAGAACAAACAATAG+TGG 0.475113 1_1:+51228710 None:intergenic
TCAGCTCTACAGCCAGGATA+AGG 0.479607 1_1:-51227738 Msa0027030:intron
AGGTGTATCCTCTGAGTCTC+CGG 0.484946 1_1:-51227043 Msa0027030:CDS
CTTAAAAGACTCGGTTATGA+AGG 0.489119 1_1:+51227360 None:intergenic
TTGTTGCAAGTGCTTCTCTC+GGG 0.495810 1_1:-51227663 Msa0027030:CDS
ACGTTGTTAATGTCATGGTT+TGG 0.496411 1_1:+51228895 None:intergenic
TTTGATAGAATATGCACTGT+AGG 0.500953 1_1:+51226469 None:intergenic
TGTTCTTCAGCTCTACAGCC+AGG 0.501870 1_1:-51227744 Msa0027030:intron
GGTTATGAAGGATGCTGGGC+CGG 0.510643 1_1:+51227372 None:intergenic
ACCAAACGTTGTTAATGTCA+TGG 0.511914 1_1:+51228890 None:intergenic
CGAGTTCGTGGAAGTGGTGT+TGG 0.518858 1_1:-51226696 Msa0027030:CDS
GAGAATTTCGGAAACTTCTG+AGG 0.522492 1_1:+51227588 None:intergenic
TAGGTATCTATCTCTACGCT+TGG 0.524939 1_1:-51226724 Msa0027030:CDS
ATACCATAATCATCCAACTA+AGG 0.525161 1_1:-51229004 Msa0027030:five_prime_UTR
TCAGTCTCAAATTCCAAAGC+AGG 0.526917 1_1:+51227262 None:intergenic
TAGAACCTCACTCCTTATCC+TGG 0.528279 1_1:+51227726 None:intergenic
AAAATAAAAGAAATAAACCT+AGG 0.529090 1_1:+51226510 None:intergenic
AAGGGTCTCGGCATTGACAT+TGG 0.530691 1_1:-51227565 Msa0027030:CDS
GGAGATAGATGTGTGACCTC+AGG 0.532806 1_1:-51228983 Msa0027030:five_prime_UTR
GTTGTTCCATTAGTAACGGA+TGG 0.533720 1_1:-51227292 Msa0027030:CDS
GAACATCCTAACTGCCCGAA+AGG 0.535459 1_1:+51227699 None:intergenic
GGCCTACTAGATGGCATGGA+TGG 0.537031 1_1:-51226615 Msa0027030:CDS
AACATCCTAACTGCCCGAAA+GGG 0.537118 1_1:+51227700 None:intergenic
AGTTCCTCAAGACTCAGTTA+TGG 0.539436 1_1:-51228777 Msa0027030:CDS
GATGGTCGAGTTCGTGGAAG+TGG 0.539978 1_1:-51226702 Msa0027030:CDS
GAAACTTCTGAGGCTCGTGA+TGG 0.541777 1_1:+51227598 None:intergenic
TGCCATCCATGCCATCTAGT+AGG 0.546029 1_1:+51226613 None:intergenic
CCAAGAATGCACAAGAGGCT+CGG 0.547108 1_1:-51227498 Msa0027030:CDS
CCATAGTCTCTTCCTTCTGG+TGG 0.547663 1_1:+51227213 None:intergenic
CCGGTAAAGGGAATCTGGAC+TGG 0.548399 1_1:-51226636 Msa0027030:CDS
TCTTGTTGTTCCATTAGTAA+CGG 0.550298 1_1:-51227296 Msa0027030:CDS
TTGATAGAATATGCACTGTA+GGG 0.557054 1_1:+51226470 None:intergenic
GACTGGCCTACTAGATGGCA+TGG 0.557924 1_1:-51226619 Msa0027030:CDS
CAAAGCCAAGAATGCACAAG+AGG 0.560157 1_1:-51227503 Msa0027030:CDS
GGCTGAACTCCTTGTATAAG+GGG 0.560264 1_1:+51226532 None:intergenic
GCTCGACTTGTAATATGTGC+CGG 0.560267 1_1:-51227391 Msa0027030:CDS
AAGGAAGAGACTATGGCAGC+TGG 0.561092 1_1:-51227206 Msa0027030:CDS
AGAAGTTTCCGAAATTCTCA+AGG 0.563263 1_1:-51227584 Msa0027030:CDS
TATCTATCTCTACGCTTGGA+TGG 0.570017 1_1:-51226720 Msa0027030:CDS
CGATGATTGTGGATGAAACA+TGG 0.572334 1_1:+51228816 None:intergenic
TATACAAGGAGTTCAGCCCT+AGG 0.577639 1_1:-51226527 Msa0027030:three_prime_UTR
GAAGCAGAACAAACAATAGT+GGG 0.578711 1_1:+51228711 None:intergenic
TAAAATTGGTACGATGATTG+TGG 0.584880 1_1:+51228805 None:intergenic
GTGGTGTTGGTTATCCACCT+TGG 0.585801 1_1:-51226683 Msa0027030:CDS
CAAAGCAACTTGCCACCAGA+AGG 0.586550 1_1:-51227225 Msa0027030:CDS
ATTACTGTTAACTCATTGAG+AGG 0.589948 1_1:-51227418 Msa0027030:CDS
ACTCGGTTATGAAGGATGCT+GGG 0.605181 1_1:+51227368 None:intergenic
AGAGGCTCGGCTCTCAAGAG+AGG 0.606803 1_1:-51227485 Msa0027030:CDS
AAATAAAAGAAATAAACCTA+GGG 0.617898 1_1:+51226511 None:intergenic
GAAGTTTCCGAAATTCTCAA+GGG 0.624267 1_1:-51227583 Msa0027030:CDS
GTCCAGATTCCCTTTACCGG+CGG 0.627179 1_1:+51226639 None:intergenic
AGAAGCACTTGCAACAAAAG+CGG 0.630503 1_1:+51227669 None:intergenic
TGAGACTGAAGAGACTGATG+AGG 0.632957 1_1:-51227248 Msa0027030:CDS
GAGGTGGTGTTGGGAGAGTG+AGG 0.635330 1_1:+51228838 None:intergenic
TTTCGTTGCACAATTACCGC+CGG 0.637674 1_1:-51226655 Msa0027030:CDS
TACTTACACCGGAGACTCAG+AGG 0.639799 1_1:+51227035 None:intergenic
ATAGACATACTCGGACCACT+CGG 0.641066 1_1:+51227168 None:intergenic
TTGTGGATGAAACATGGAGG+TGG 0.644703 1_1:+51228822 None:intergenic
TACAGCCAGGATAAGGAGTG+AGG 0.659492 1_1:-51227731 Msa0027030:CDS
TGTGCAACGAAAGCATTCCA+AGG 0.663502 1_1:+51226666 None:intergenic
GACATACTCGGACCACTCGG+AGG 0.696435 1_1:+51227171 None:intergenic
TGAACTAACTGATCATCCTG+AGG 0.696649 1_1:+51228967 None:intergenic
CTGTAGGGAAACAAAACCAG+AGG 0.697117 1_1:+51226485 None:intergenic
GCTGAACTCCTTGTATAAGG+GGG 0.708386 1_1:+51226533 None:intergenic
GTGACCATAACTGAGTCTTG+AGG 0.719771 1_1:+51228773 None:intergenic
CTCCAGTTATCACCTCCGAG+TGG 0.727203 1_1:-51227183 Msa0027030:CDS
GCAACGAAAGCATTCCAAGG+TGG 0.729632 1_1:+51226669 None:intergenic
TGATTGTGGATGAAACATGG+AGG 0.830631 1_1:+51228819 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATCATATATTTAGTTT+AGG - chr1_1:51228880-51228899 Msa0027030:CDS 10.0%
!!! ACTAAAATTTAGTTGATTTT+TGG + chr1_1:51226988-51227007 None:intergenic 15.0%
!!! ATTTTCTATTATTCAAACTT+AGG + chr1_1:51228426-51228445 None:intergenic 15.0%
!! AAATAAAAGAAATAAACCTA+GGG + chr1_1:51228799-51228818 None:intergenic 15.0%
!! AAAATAAAAGAAATAAACCT+AGG + chr1_1:51228800-51228819 None:intergenic 15.0%
!! AGAAGAATTAGATTGTTTAT+TGG + chr1_1:51226621-51226640 None:intergenic 20.0%
!! AATCTAATTCTTCTCAAATT+AGG - chr1_1:51226627-51226646 Msa0027030:CDS 20.0%
!!! ATTTTTCACAAAACAAAAAG+AGG + chr1_1:51226667-51226686 None:intergenic 20.0%
!!! TTGAGGTAATTGTTTTAATA+TGG - chr1_1:51226737-51226756 Msa0027030:intron 20.0%
!!! AAAATTTAGTTGATTTTTGG+TGG + chr1_1:51226985-51227004 None:intergenic 20.0%
!! GAGGAAAAAATTAAAACAAT+TGG + chr1_1:51228203-51228222 None:intergenic 20.0%
!!! TTAACATTTTAGCACTAATA+TGG + chr1_1:51228302-51228321 None:intergenic 20.0%
!! TGTTTTGTGAAAAATGCTTT+TGG - chr1_1:51226672-51226691 Msa0027030:CDS 25.0%
! AGTGCAAATAATGTTATGTA+TGG + chr1_1:51226885-51226904 None:intergenic 25.0%
!!! AGAAGCATTGTTTTTTTCAT+TGG - chr1_1:51227100-51227119 Msa0027030:intron 25.0%
!!! CATGTTTTAGATTTAGTTTG+TGG - chr1_1:51227152-51227171 Msa0027030:intron 25.0%
! AAAGATATGAAAATCGCAAA+CGG - chr1_1:51227241-51227260 Msa0027030:CDS 25.0%
!! TTTATATCTGCAATTTTGCT+TGG - chr1_1:51227366-51227385 Msa0027030:intron 25.0%
! GTTAGATGAACAAAAAAAGA+TGG - chr1_1:51228240-51228259 Msa0027030:intron 25.0%
! TTCTTTAGCTGAAAAATTAG+AGG + chr1_1:51228339-51228358 None:intergenic 25.0%
! AAGAAAACAGATACGAAAAA+CGG + chr1_1:51228527-51228546 None:intergenic 25.0%
!! TATCTGTTTTCTTTCAAACA+AGG - chr1_1:51228534-51228553 Msa0027030:intron 25.0%
!! ATCTGTTTTCTTTCAAACAA+GGG - chr1_1:51228535-51228554 Msa0027030:intron 25.0%
!!! ATTTCTTTTATTTTTGCCTC+TGG - chr1_1:51228806-51228825 Msa0027030:CDS 25.0%
ATACCATAATCATCCAACTA+AGG - chr1_1:51226303-51226322 Msa0027030:three_prime_UTR 30.0%
AGTTTCACTTTCTTTGCATA+TGG - chr1_1:51226362-51226381 Msa0027030:three_prime_UTR 30.0%
AACTACTGAAACATTCACTT+TGG - chr1_1:51226387-51226406 Msa0027030:three_prime_UTR 30.0%
TAAAATTGGTACGATGATTG+TGG + chr1_1:51226505-51226524 None:intergenic 30.0%
TGAGGAACTGAACATAAAAT+TGG + chr1_1:51226519-51226538 None:intergenic 30.0%
! TTTTATCAGAATTCGAACCT+CGG + chr1_1:51226803-51226822 None:intergenic 30.0%
CTAGAGTAGCATTCAATTAA+TGG - chr1_1:51226959-51226978 Msa0027030:intron 30.0%
GGTAACACATAAAATGTAGT+AGG + chr1_1:51227030-51227049 None:intergenic 30.0%
! ATCTAAAACATGTACACCAA+TGG + chr1_1:51227144-51227163 None:intergenic 30.0%
! CTGCATTCATTTGATTTCAA+AGG + chr1_1:51227434-51227453 None:intergenic 30.0%
AAAGAAGCTTTGCATAAAGA+GGG + chr1_1:51227488-51227507 None:intergenic 30.0%
ATAGCAATCTCACAACTAAT+TGG - chr1_1:51227673-51227692 Msa0027030:CDS 30.0%
!! CTTTGTTGTCTCTAAAGTAT+AGG + chr1_1:51227789-51227808 None:intergenic 30.0%
ATTACTGTTAACTCATTGAG+AGG - chr1_1:51227889-51227908 Msa0027030:intron 30.0%
! ACATTTCACAGAAAGTCTTT+TGG - chr1_1:51227978-51227997 Msa0027030:intron 30.0%
!! TCTTGTTGTTCCATTAGTAA+CGG - chr1_1:51228011-51228030 Msa0027030:intron 30.0%
AAATTTCCATCCGTTACTAA+TGG + chr1_1:51228024-51228043 None:intergenic 30.0%
!!! TTTTCCTCGTCTTGTTTAAT+AGG - chr1_1:51228215-51228234 Msa0027030:intron 30.0%
AATATGGATAGTACTTACAC+CGG + chr1_1:51228286-51228305 None:intergenic 30.0%
GAATACACAAGATTTGACAA+CGG + chr1_1:51228497-51228516 None:intergenic 30.0%
TTCTAACAGTTTCAATGTGT+AGG - chr1_1:51228564-51228583 Msa0027030:intron 30.0%
TTGATAGAATATGCACTGTA+GGG + chr1_1:51228840-51228859 None:intergenic 30.0%
TTTGATAGAATATGCACTGT+AGG + chr1_1:51228841-51228860 None:intergenic 30.0%
TCTCCTTAGTTGGATGATTA+TGG + chr1_1:51226309-51226328 None:intergenic 35.0%
ACGTTGTTAATGTCATGGTT+TGG + chr1_1:51226415-51226434 None:intergenic 35.0%
ACCATGACATTAACAACGTT+TGG - chr1_1:51226416-51226435 Msa0027030:three_prime_UTR 35.0%
ACCAAACGTTGTTAATGTCA+TGG + chr1_1:51226420-51226439 None:intergenic 35.0%
GAAGCAGAACAAACAATAGT+GGG + chr1_1:51226599-51226618 None:intergenic 35.0%
TTTGTTACACTGAACTGTTG+AGG - chr1_1:51226720-51226739 Msa0027030:CDS 35.0%
TTAATATGGTTCCATTGACG+AGG - chr1_1:51226751-51226770 Msa0027030:intron 35.0%
TAATATGGTTCCATTGACGA+GGG - chr1_1:51226752-51226771 Msa0027030:intron 35.0%
AGACATGAGAACCATAAGAA+GGG + chr1_1:51227056-51227075 None:intergenic 35.0%
TAACACACGGTATTTGATCA+CGG - chr1_1:51227265-51227284 Msa0027030:CDS 35.0%
AAGAAGCTTTGCATAAAGAG+GGG + chr1_1:51227487-51227506 None:intergenic 35.0%
GAAAGAAGCTTTGCATAAAG+AGG + chr1_1:51227489-51227508 None:intergenic 35.0%
AGAAGTTTCCGAAATTCTCA+AGG - chr1_1:51227723-51227742 Msa0027030:CDS 35.0%
GAAGTTTCCGAAATTCTCAA+GGG - chr1_1:51227724-51227743 Msa0027030:CDS 35.0%
ATTGGAGCAGTATCTTTGTT+TGG - chr1_1:51227760-51227779 Msa0027030:intron 35.0%
! CTTAAAAGACTCGGTTATGA+AGG + chr1_1:51227950-51227969 None:intergenic 35.0%
TGTGTTGTCATAGACATACT+CGG + chr1_1:51228151-51228170 None:intergenic 35.0%
GATGAACAAAAAAAGATGGC+AGG - chr1_1:51228244-51228263 Msa0027030:intron 35.0%
! GTTCTTTTCCATACTCTTGA+AGG - chr1_1:51228727-51228746 Msa0027030:CDS 35.0%
CACACATCTATCTCCTTAGT+TGG + chr1_1:51226319-51226338 None:intergenic 40.0%
TGAACTAACTGATCATCCTG+AGG + chr1_1:51226343-51226362 None:intergenic 40.0%
TGATTGTGGATGAAACATGG+AGG + chr1_1:51226491-51226510 None:intergenic 40.0%
CGATGATTGTGGATGAAACA+TGG + chr1_1:51226494-51226513 None:intergenic 40.0%
AGTTCCTCAAGACTCAGTTA+TGG - chr1_1:51226530-51226549 Msa0027030:three_prime_UTR 40.0%
TAGTGGGAACAGAAGATCTT+TGG + chr1_1:51226583-51226602 None:intergenic 40.0%
GGAAGCAGAACAAACAATAG+TGG + chr1_1:51226600-51226619 None:intergenic 40.0%
TGGATAGCTCAATTGGTTGA+AGG - chr1_1:51226776-51226795 Msa0027030:intron 40.0%
GGATAGCTCAATTGGTTGAA+GGG - chr1_1:51226777-51226796 Msa0027030:intron 40.0%
CAGACATGAGAACCATAAGA+AGG + chr1_1:51227057-51227076 None:intergenic 40.0%
CTTCTTATGGTTCTCATGTC+TGG - chr1_1:51227055-51227074 Msa0027030:CDS 40.0%
GTCTGGCAAAGAATGAGATT+AGG - chr1_1:51227072-51227091 Msa0027030:CDS 40.0%
CCAATGGTAAGAGAACAAGA+TGG + chr1_1:51227128-51227147 None:intergenic 40.0%
CCATCTTGTTCTCTTACCAT+TGG - chr1_1:51227125-51227144 Msa0027030:intron 40.0%
AATCGCAAACGGATAACACA+CGG - chr1_1:51227252-51227271 Msa0027030:CDS 40.0%
!! AGAAGCACTTGCAACAAAAG+CGG + chr1_1:51227641-51227660 None:intergenic 40.0%
TTTGTTGCAAGTGCTTCTCT+CGG - chr1_1:51227643-51227662 Msa0027030:CDS 40.0%
GAGAATTTCGGAAACTTCTG+AGG + chr1_1:51227722-51227741 None:intergenic 40.0%
TTCACTGCGCTTAAAAGACT+CGG + chr1_1:51227959-51227978 None:intergenic 40.0%
! ACAGAAAGTCTTTTGGACAG+AGG - chr1_1:51227985-51228004 Msa0027030:intron 40.0%
! GTTGTTCCATTAGTAACGGA+TGG - chr1_1:51228015-51228034 Msa0027030:intron 40.0%
TCAGTCTCAAATTCCAAAGC+AGG + chr1_1:51228048-51228067 None:intergenic 40.0%
!! TCCTCGTCTTGTTTAATAGG+TGG - chr1_1:51228218-51228237 Msa0027030:intron 40.0%
ACCACCTATTAAACAAGACG+AGG + chr1_1:51228222-51228241 None:intergenic 40.0%
TAGGTATCTATCTCTACGCT+TGG - chr1_1:51228583-51228602 Msa0027030:intron 40.0%
TATCTATCTCTACGCTTGGA+TGG - chr1_1:51228587-51228606 Msa0027030:intron 40.0%
GAGATGATCCTTCAAGAGTA+TGG + chr1_1:51228738-51228757 None:intergenic 40.0%
TGAAACATGGAGGTGGTGTT+GGG + chr1_1:51226481-51226500 None:intergenic 45.0%
ATGAAACATGGAGGTGGTGT+TGG + chr1_1:51226482-51226501 None:intergenic 45.0%
TTGTGGATGAAACATGGAGG+TGG + chr1_1:51226488-51226507 None:intergenic 45.0%
GTGACCATAACTGAGTCTTG+AGG + chr1_1:51226537-51226556 None:intergenic 45.0%
GTGTTACCTCACCCTTCTTA+TGG - chr1_1:51227042-51227061 Msa0027030:CDS 45.0%
TGAGAACCATAAGAAGGGTG+AGG + chr1_1:51227051-51227070 None:intergenic 45.0%
ACGGTATTTGATCACGGAGT+TGG - chr1_1:51227271-51227290 Msa0027030:CDS 45.0%
CGGTATTTGATCACGGAGTT+GGG - chr1_1:51227272-51227291 Msa0027030:CDS 45.0%
! TCCCCTTCCTTTTCTGCTTT+TGG - chr1_1:51227397-51227416 Msa0027030:CDS 45.0%
CCCAAAAGCAGAAAAGGAAG+GGG + chr1_1:51227401-51227420 None:intergenic 45.0%
!! CCCCTTCCTTTTCTGCTTTT+GGG - chr1_1:51227398-51227417 Msa0027030:CDS 45.0%
CCCCAAAAGCAGAAAAGGAA+GGG + chr1_1:51227402-51227421 None:intergenic 45.0%
!! CCCTTCCTTTTCTGCTTTTG+GGG - chr1_1:51227399-51227418 Msa0027030:CDS 45.0%
CTTTGCCCCAAAAGCAGAAA+AGG + chr1_1:51227407-51227426 None:intergenic 45.0%
! GATTGATGAAGCATCACTGC+AGG + chr1_1:51227527-51227546 None:intergenic 45.0%
TAGAACCTCACTCCTTATCC+TGG + chr1_1:51227584-51227603 None:intergenic 45.0%
GTGAGGTTCTATCTCCCTTT+CGG - chr1_1:51227593-51227612 Msa0027030:CDS 45.0%
TGAGGTTCTATCTCCCTTTC+GGG - chr1_1:51227594-51227613 Msa0027030:CDS 45.0%
AACATCCTAACTGCCCGAAA+GGG + chr1_1:51227610-51227629 None:intergenic 45.0%
TTGTTGCAAGTGCTTCTCTC+GGG - chr1_1:51227644-51227663 Msa0027030:CDS 45.0%
TCCGAAATTCTCAAGGGTCT+CGG - chr1_1:51227730-51227749 Msa0027030:CDS 45.0%
CAAAGCCAAGAATGCACAAG+AGG - chr1_1:51227804-51227823 Msa0027030:intron 45.0%
! GCTCGACTTGTAATATGTGC+CGG - chr1_1:51227916-51227935 Msa0027030:intron 45.0%
ACTCGGTTATGAAGGATGCT+GGG + chr1_1:51227942-51227961 None:intergenic 45.0%
GGATGGAAATTTGCCTGCTT+TGG - chr1_1:51228032-51228051 Msa0027030:intron 45.0%
TGAGACTGAAGAGACTGATG+AGG - chr1_1:51228059-51228078 Msa0027030:intron 45.0%
ATAGACATACTCGGACCACT+CGG + chr1_1:51228142-51228161 None:intergenic 45.0%
!! TGTGCAACGAAAGCATTCCA+AGG + chr1_1:51228644-51228663 None:intergenic 45.0%
TTTCGTTGCACAATTACCGC+CGG - chr1_1:51228652-51228671 Msa0027030:intron 45.0%
ATACTCCTCCCCCTTATACA+AGG - chr1_1:51228766-51228785 Msa0027030:CDS 45.0%
GCTGAACTCCTTGTATAAGG+GGG + chr1_1:51228777-51228796 None:intergenic 45.0%
GGCTGAACTCCTTGTATAAG+GGG + chr1_1:51228778-51228797 None:intergenic 45.0%
GGGCTGAACTCCTTGTATAA+GGG + chr1_1:51228779-51228798 None:intergenic 45.0%
AGGGCTGAACTCCTTGTATA+AGG + chr1_1:51228780-51228799 None:intergenic 45.0%
TATACAAGGAGTTCAGCCCT+AGG - chr1_1:51228780-51228799 Msa0027030:CDS 45.0%
CTGTAGGGAAACAAAACCAG+AGG + chr1_1:51228825-51228844 None:intergenic 45.0%
GGAGATAGATGTGTGACCTC+AGG - chr1_1:51226324-51226343 Msa0027030:three_prime_UTR 50.0%
ATGGTTCCATTGACGAGGGT+TGG - chr1_1:51226756-51226775 Msa0027030:intron 50.0%
AGCTATCCAACCCTCGTCAA+TGG + chr1_1:51226765-51226784 None:intergenic 50.0%
CGAGGGTTGGATAGCTCAAT+TGG - chr1_1:51226769-51226788 Msa0027030:intron 50.0%
TGTGCTCAAATCTCCGACTG+CGG - chr1_1:51227300-51227319 Msa0027030:CDS 50.0%
GCCCCAAAAGCAGAAAAGGA+AGG + chr1_1:51227403-51227422 None:intergenic 50.0%
TGTTCTTCAGCTCTACAGCC+AGG - chr1_1:51227563-51227582 Msa0027030:CDS 50.0%
TCAGCTCTACAGCCAGGATA+AGG - chr1_1:51227569-51227588 Msa0027030:CDS 50.0%
TACAGCCAGGATAAGGAGTG+AGG - chr1_1:51227576-51227595 Msa0027030:CDS 50.0%
TATCTCCCTTTCGGGCAGTT+AGG - chr1_1:51227602-51227621 Msa0027030:CDS 50.0%
GAACATCCTAACTGCCCGAA+AGG + chr1_1:51227611-51227630 None:intergenic 50.0%
!! GAAACTTCTGAGGCTCGTGA+TGG + chr1_1:51227712-51227731 None:intergenic 50.0%
GCCGAGACCCTTGAGAATTT+CGG + chr1_1:51227734-51227753 None:intergenic 50.0%
!! AAGGGTCTCGGCATTGACAT+TGG - chr1_1:51227742-51227761 Msa0027030:intron 50.0%
CCAAGAATGCACAAGAGGCT+CGG - chr1_1:51227809-51227828 Msa0027030:intron 50.0%
! GACTCGGTTATGAAGGATGC+TGG + chr1_1:51227943-51227962 None:intergenic 50.0%
CAAAGCAACTTGCCACCAGA+AGG - chr1_1:51228082-51228101 Msa0027030:intron 50.0%
CCATAGTCTCTTCCTTCTGG+TGG + chr1_1:51228097-51228116 None:intergenic 50.0%
CCACCAGAAGGAAGAGACTA+TGG - chr1_1:51228094-51228113 Msa0027030:intron 50.0%
CTGCCATAGTCTCTTCCTTC+TGG + chr1_1:51228100-51228119 None:intergenic 50.0%
AAGGAAGAGACTATGGCAGC+TGG - chr1_1:51228101-51228120 Msa0027030:intron 50.0%
AGGTGTATCCTCTGAGTCTC+CGG - chr1_1:51228264-51228283 Msa0027030:intron 50.0%
TACTTACACCGGAGACTCAG+AGG + chr1_1:51228275-51228294 None:intergenic 50.0%
CACTGCAGCCACTATGTAGT+CGG - chr1_1:51228446-51228465 Msa0027030:intron 50.0%
CTTCGTCTCCGACTACATAG+TGG + chr1_1:51228457-51228476 None:intergenic 50.0%
!! GTGGTGTTGGTTATCCACCT+TGG - chr1_1:51228624-51228643 Msa0027030:intron 50.0%
!! GCAACGAAAGCATTCCAAGG+TGG + chr1_1:51228641-51228660 None:intergenic 50.0%
TGCACAATTACCGCCGGTAA+AGG - chr1_1:51228658-51228677 Msa0027030:intron 50.0%
GCACAATTACCGCCGGTAAA+GGG - chr1_1:51228659-51228678 Msa0027030:intron 50.0%
CCAGTCCAGATTCCCTTTAC+CGG + chr1_1:51228674-51228693 None:intergenic 50.0%
!! ATCTGGACTGGCCTACTAGA+TGG - chr1_1:51228683-51228702 Msa0027030:CDS 50.0%
TGCCATCCATGCCATCTAGT+AGG + chr1_1:51228697-51228716 None:intergenic 50.0%
GAACTCCTTGTATAAGGGGG+AGG + chr1_1:51228774-51228793 None:intergenic 50.0%
CTCAATTGGTTGAAGGGCCG+AGG - chr1_1:51226783-51226802 Msa0027030:intron 55.0%
TCAAATCTCCGACTGCGGAG+CGG - chr1_1:51227305-51227324 Msa0027030:CDS 55.0%
CCGAGCCTCTTGTGCATTCT+TGG + chr1_1:51227812-51227831 None:intergenic 55.0%
GGTTATGAAGGATGCTGGGC+CGG + chr1_1:51227938-51227957 None:intergenic 55.0%
CTCCAGTTATCACCTCCGAG+TGG - chr1_1:51228124-51228143 Msa0027030:intron 55.0%
GACCACTCGGAGGTGATAAC+TGG + chr1_1:51228129-51228148 None:intergenic 55.0%
GTCGGAGACGAAGACACAGT+TGG - chr1_1:51228464-51228483 Msa0027030:intron 55.0%
GATGGTCGAGTTCGTGGAAG+TGG - chr1_1:51228605-51228624 Msa0027030:intron 55.0%
CGAGTTCGTGGAAGTGGTGT+TGG - chr1_1:51228611-51228630 Msa0027030:intron 55.0%
TACCGCCGGTAAAGGGAATC+TGG - chr1_1:51228666-51228685 Msa0027030:intron 55.0%
GTCCAGATTCCCTTTACCGG+CGG + chr1_1:51228671-51228690 None:intergenic 55.0%
CCGGTAAAGGGAATCTGGAC+TGG - chr1_1:51228671-51228690 Msa0027030:intron 55.0%
!! GACTGGCCTACTAGATGGCA+TGG - chr1_1:51228688-51228707 Msa0027030:CDS 55.0%
GGCCTACTAGATGGCATGGA+TGG - chr1_1:51228692-51228711 Msa0027030:CDS 55.0%
! GAGGTGGTGTTGGGAGAGTG+AGG + chr1_1:51226472-51226491 None:intergenic 60.0%
CAAATCTCCGACTGCGGAGC+GGG - chr1_1:51227306-51227325 Msa0027030:CDS 60.0%
AGAGGCTCGGCTCTCAAGAG+AGG - chr1_1:51227822-51227841 Msa0027030:intron 60.0%
GACATACTCGGACCACTCGG+AGG + chr1_1:51228139-51228158 None:intergenic 60.0%
CGCTTGGATGGTCGAGTTCG+TGG - chr1_1:51228599-51228618 Msa0027030:intron 60.0%
TATGCAGCCCGCTCCGCAGT+CGG + chr1_1:51227316-51227335 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 51226295 51229034 51226295 ID=Msa0027030;Name=Msa0027030
chr1_1 mRNA 51226295 51229034 51226295 ID=Msa0027030-mRNA-1;Parent=Msa0027030;Name=Msa0027030-mRNA-1;_AED=0.04;_eAED=0.04;_QI=124|0.6|0.5|1|0.4|0.33|6|310|320
chr1_1 exon 51226295 51226743 51226295 ID=Msa0027030-mRNA-1:exon:14944;Parent=Msa0027030-mRNA-1
chr1_1 exon 51227042 51227092 51227042 ID=Msa0027030-mRNA-1:exon:14943;Parent=Msa0027030-mRNA-1
chr1_1 exon 51227178 51227354 51227178 ID=Msa0027030-mRNA-1:exon:14942;Parent=Msa0027030-mRNA-1
chr1_1 exon 51227370 51227531 51227370 ID=Msa0027030-mRNA-1:exon:14941;Parent=Msa0027030-mRNA-1
chr1_1 exon 51227553 51227756 51227553 ID=Msa0027030-mRNA-1:exon:14940;Parent=Msa0027030-mRNA-1
chr1_1 exon 51228681 51229034 51228681 ID=Msa0027030-mRNA-1:exon:14939;Parent=Msa0027030-mRNA-1
chr1_1 five_prime_UTR 51228911 51229034 51228911 ID=Msa0027030-mRNA-1:five_prime_utr;Parent=Msa0027030-mRNA-1
chr1_1 CDS 51228681 51228910 51228681 ID=Msa0027030-mRNA-1:cds;Parent=Msa0027030-mRNA-1
chr1_1 CDS 51227553 51227756 51227553 ID=Msa0027030-mRNA-1:cds;Parent=Msa0027030-mRNA-1
chr1_1 CDS 51227370 51227531 51227370 ID=Msa0027030-mRNA-1:cds;Parent=Msa0027030-mRNA-1
chr1_1 CDS 51227178 51227354 51227178 ID=Msa0027030-mRNA-1:cds;Parent=Msa0027030-mRNA-1
chr1_1 CDS 51227042 51227092 51227042 ID=Msa0027030-mRNA-1:cds;Parent=Msa0027030-mRNA-1
chr1_1 CDS 51226605 51226743 51226605 ID=Msa0027030-mRNA-1:cds;Parent=Msa0027030-mRNA-1
chr1_1 three_prime_UTR 51226295 51226604 51226295 ID=Msa0027030-mRNA-1:three_prime_utr;Parent=Msa0027030-mRNA-1
Gene Sequence

>Msa0027030

ATGACATTAACAACGTTTGGTTCTACTTCTGCTAACTCTAACACTTTGTTCCTCACTCTCCCAACACCACCTCCATGTTTCATCCACAATCATCGTACCAATTTTATGTTCAGTTCCTCAAGACTCAGTTATGGTCACACTCACACTCTTTACTATTCTCACCAAAGATCTTCTGTTCCCACTATTGTTTGTTCTGCTTCCAATAAACAATCTAATTCTTCTCAAATTAGCTCTACAGCCAGGATAAGGAGTGAGGTTCTATCTCCCTTTCGGGCAGTTAGGATGTTCTTTTACACCGCTTTTGTTGCAAGTGCTTCTCTCGGGACACTCATAGCAATCTCACAACTAATTGGTGCACTGTCTAATCCATCACGAGCCTCAGAAGTTTCCGAAATTCTCAAGGGTCTCGGCATTGACATTGGAGCAGTATCTTTAGACAACAAAGCCAAGAATGCACAAGAGGCTCGGCTCTCAAGAGAGGAATTTTTGTCAAATCTTAAGCTACGTGTGAGCGAGAAGAAGATCATTACTGTTAACTCATTGAGAGGAATTGCTCGACTTGTAATATGTGCCGGCCCAGCATCCTTCATAACCGATGAACATTTCACAGAAAGTCTTTTGGACAGAGGAGTTCTTGTTGTTCCATTAGTAACGGATGGAAATTTGCCTGCTTTGGAATTTGAGACTGAAGAGACTGATGAGGCAAAGCAACTTGCCACCAGAAGGAAGAGACTATGGCAGCTGGCTCCAGTTATCACCTCCGAGTGGTCCGAGTGGTTAGATGAACAAAAAAAGATGGCAGGTGTATCCTCTGAGTCTCCGGTGTATCTATCTCTACGCTTGGATGGTCGAGTTCGTGGAAGTGGTGTTGGTTATCCACCTTGGAATGCTTTCGTTGCACAATTACCGCCGGTAAAGGGAATCTGGACTGGCCTACTAGATGGCATGGATGGCAGAGTTTAG

Protein sequence

>Msa0027030

MTLTTFGSTSANSNTLFLTLPTPPPCFIHNHRTNFMFSSSRLSYGHTHTLYYSHQRSSVPTIVCSASNKQSNSSQISSTARIRSEVLSPFRAVRMFFYTAFVASASLGTLIAISQLIGALSNPSRASEVSEILKGLGIDIGAVSLDNKAKNAQEARLSREEFLSNLKLRVSEKKIITVNSLRGIARLVICAGPASFITDEHFTESLLDRGVLVVPLVTDGNLPALEFETEETDEAKQLATRRKRLWQLAPVITSEWSEWLDEQKKMAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWTGLLDGMDGRV*