AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0628440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0628440 MtrunA17_Chr4g0004251 95.686 255 11 0 1 255 1 255 4.02e-178 489
Msa0628440 MtrunA17_Chr2g0323811 32.547 212 134 3 43 251 55 260 2.66e-37 132
Msa0628440 MtrunA17_Chr5g0407481 34.351 131 83 1 124 251 2 132 1.52e-22 90.1
Msa0628440 MtrunA17_Chr2g0323801 31.538 130 82 2 124 251 2 126 1.14e-19 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0628440 AT1G04940.1 63.750 240 80 2 22 255 36 274 1.78e-105 307
Msa0628440 AT1G04945.3 60.633 221 80 2 22 236 36 255 6.78e-86 268
Msa0628440 AT4G03320.1 35.000 220 130 5 38 251 59 271 3.67e-40 140

Find 80 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAAATTGGAATGCATTTC+TGG 0.102228 4_3:-9094476 Msa0628440:CDS
TTCACCCTTCATATGGTATT+TGG 0.132090 4_3:+9094349 None:intergenic
TCTCAAGTTTCCGAAGTTTA+TGG 0.173905 4_3:-9096922 Msa0628440:CDS
GATGCCACTGGGGTTCTATT+GGG 0.221927 4_3:-9094499 Msa0628440:CDS
GGATGCCACTGGGGTTCTAT+TGG 0.233429 4_3:-9094500 Msa0628440:CDS
TCAAATTTGTGTCATTATTC+AGG 0.234665 4_3:-9097149 Msa0628440:intron
GGGTTCTATTGGGGTAAAAT+TGG 0.263490 4_3:-9094489 Msa0628440:CDS
GAGATAGCCTTGCAAGTTAC+AGG 0.289946 4_3:-9094537 Msa0628440:CDS
CTTCGCTGCGCAAGTCTTGT+AGG 0.317793 4_3:-9094884 Msa0628440:CDS
CAAACTGATTAGCCATTCTA+TGG 0.327158 4_3:+9094256 None:intergenic
CTCAAGTTTCCGAAGTTTAT+GGG 0.327570 4_3:-9096921 Msa0628440:CDS
TGCGTTAGGTGTGCCCTTAC+TGG 0.339865 4_3:-9094414 Msa0628440:CDS
ACTAGTGATTCAAGCATGAT+TGG 0.342277 4_3:-9097013 Msa0628440:intron
ATCAAATTTATCTGTATTCT+CGG 0.358270 4_3:-9094167 Msa0628440:three_prime_UTR
GGCACACCTAACGCACTCTA+TGG 0.372183 4_3:+9094422 None:intergenic
CTATGGAAGTAAAGAGATAA+AGG 0.374679 4_3:+9094439 None:intergenic
AACTCGAATGCCTCAATAAA+CGG 0.375295 4_3:+9094705 None:intergenic
TACATATTTCACCCTTCATA+TGG 0.376846 4_3:+9094342 None:intergenic
TGTGAGCCGTTGGATGCCAC+TGG 0.406570 4_3:-9094511 Msa0628440:CDS
AGTGTTCTCCACCACCATCT+TGG 0.422947 4_3:+9094798 None:intergenic
TTACTTCCATAGAGTGCGTT+AGG 0.425451 4_3:-9094428 Msa0628440:CDS
TTATCTCTTGCCTATCCATC+AGG 0.444896 4_3:-9094763 Msa0628440:CDS
GATGGATAGGCAAGAGATAA+GGG 0.454516 4_3:+9094766 None:intergenic
CGCTTGTCAAATGCCTGCTA+AGG 0.455039 4_3:-9096951 Msa0628440:CDS
ATGCCACTGGGGTTCTATTG+GGG 0.470377 4_3:-9094498 Msa0628440:CDS
GTGAGCCGTTGGATGCCACT+GGG 0.473897 4_3:-9094510 Msa0628440:CDS
CAATCTTCACCCGTTTATTG+AGG 0.476868 4_3:-9094715 Msa0628440:CDS
ACTCGAATGCCTCAATAAAC+GGG 0.477425 4_3:+9094706 None:intergenic
TCAAATTTATCTGTATTCTC+GGG 0.482206 4_3:-9094166 Msa0628440:three_prime_UTR
TATGCTGCATCACAGACAAA+AGG 0.482262 4_3:+9094375 None:intergenic
TGATGGATAGGCAAGAGATA+AGG 0.482592 4_3:+9094765 None:intergenic
TTCGCTGCGCAAGTCTTGTA+GGG 0.489910 4_3:-9094883 Msa0628440:CDS
TATGAAGGGTGAAATATGTA+AGG 0.493929 4_3:-9094339 Msa0628440:exon
TATATCCAAATACCATATGA+AGG 0.493979 4_3:-9094354 Msa0628440:CDS
ATGAAGGAAGGCTCATCTGC+TGG 0.500226 4_3:-9094849 Msa0628440:CDS
TTCAGATTTCACGTTGCCGT+CGG 0.502375 4_3:-9094570 Msa0628440:CDS
ATATAACTAAAATGTACTCA+AGG 0.510206 4_3:+9094194 None:intergenic
TAGGGCCCCTCGAGCAATGA+AGG 0.513500 4_3:-9094865 Msa0628440:CDS
TGTTAAGCAGAACCATAGAA+TGG 0.514387 4_3:-9094268 Msa0628440:three_prime_UTR
CAATTGGCAGTCTACCTAGA+TGG 0.514868 4_3:-9094659 Msa0628440:CDS
GAGCCTTCCTTCATTGCTCG+AGG 0.525595 4_3:+9094858 None:intergenic
TCAAGCATGATTGGAAATGT+TGG 0.526715 4_3:-9097004 Msa0628440:exon
TATCCGCATACATACCAGTA+AGG 0.527566 4_3:+9094400 None:intergenic
AAGGGTGAAATATGTAAGGA+AGG 0.534388 4_3:-9094335 Msa0628440:exon
GTAACACAAAACAGAACCTT+GGG 0.535984 4_3:+9096973 None:intergenic
AGCCTTCCTTCATTGCTCGA+GGG 0.536520 4_3:+9094859 None:intergenic
ATGCTGCATCACAGACAAAA+GGG 0.543856 4_3:+9094376 None:intergenic
CTACAAGACTTGCGCAGCGA+AGG 0.549633 4_3:+9094885 None:intergenic
TTACAGGGCTTGTGAGCCGT+TGG 0.554372 4_3:-9094521 Msa0628440:CDS
TAGCATACATCCACACCTGA+TGG 0.557726 4_3:+9094748 None:intergenic
CGTAACACAAAACAGAACCT+TGG 0.561329 4_3:+9096972 None:intergenic
CTTGAGACAGAAACCTTAGC+AGG 0.566926 4_3:+9096938 None:intergenic
AGATAGCCTTGCAAGTTACA+GGG 0.572582 4_3:-9094536 Msa0628440:CDS
AAGTATGTCCCCATAAACTT+CGG 0.579692 4_3:+9096912 None:intergenic
TACATCCACACCTGATGGAT+AGG 0.579710 4_3:+9094753 None:intergenic
CCAGAAAACCAAGATGGTGG+TGG 0.582114 4_3:-9094806 Msa0628440:CDS
TATGCTATGAGAGACCATCT+AGG 0.591244 4_3:+9094645 None:intergenic
CACAAGCCCTGTAACTTGCA+AGG 0.594415 4_3:+9094530 None:intergenic
TCAAGTTTCCGAAGTTTATG+GGG 0.594717 4_3:-9096920 Msa0628440:CDS
ACGTGAAATCTGAAGAAATG+AGG 0.595610 4_3:+9094579 None:intergenic
TTGCGCAGCGAAGGTAACAC+AGG 0.597116 4_3:+9094894 None:intergenic
TTGCGTATCTTACCATTGTG+AGG 0.599587 4_3:-9094614 Msa0628440:CDS
GCCTTCCTTCATTGCTCGAG+GGG 0.601540 4_3:+9094860 None:intergenic
TCTTGCCTATCCATCAGGTG+TGG 0.604602 4_3:-9094758 Msa0628440:CDS
TATAACTAAAATGTACTCAA+GGG 0.614178 4_3:+9094195 None:intergenic
GCCCCTCGAGCAATGAAGGA+AGG 0.617175 4_3:-9094861 Msa0628440:CDS
AATGTTGGCACTATATCCCA+AGG 0.625899 4_3:-9096989 Msa0628440:CDS
ATATCCAAATACCATATGAA+GGG 0.626189 4_3:-9094353 Msa0628440:CDS
CGATGACCAGAAAACCAAGA+TGG 0.627736 4_3:-9094812 Msa0628440:CDS
CTCAAGGGAAAATATCAAAG+AGG 0.636624 4_3:+9094210 None:intergenic
AGAACCCCAGTGGCATCCAA+CGG 0.641127 4_3:+9094505 None:intergenic
CCATTGTGAGGAGAAAAGAA+TGG 0.645047 4_3:-9094602 Msa0628440:CDS
TGCCCTTACTGGTATGTATG+CGG 0.645316 4_3:-9094403 Msa0628440:CDS
ATCCGCATACATACCAGTAA+GGG 0.651307 4_3:+9094401 None:intergenic
TGACCAGAAAACCAAGATGG+TGG 0.673799 4_3:-9094809 Msa0628440:CDS
ACTTTAGAGATTAAACCAAG+AGG 0.685569 4_3:-9096893 Msa0628440:intron
TGCGCAGCGAAGGTAACACA+GGG 0.711989 4_3:+9094895 None:intergenic
TATCTCGATTAACATTCCGA+CGG 0.723472 4_3:+9094554 None:intergenic
TGAGCCGTTGGATGCCACTG+GGG 0.729430 4_3:-9094509 Msa0628440:CDS
TTACCCCAATAGAACCCCAG+TGG 0.740833 4_3:+9094495 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGAATAATAAAAAAAC+TGG - chr4_3:9094330-9094349 Msa0628440:three_prime_UTR 10.0%
!!! TTTTGAATAATAAAAAAACT+GGG - chr4_3:9094331-9094350 Msa0628440:exon 10.0%
!!! TTTTTTTTTCATATGTTTTA+TGG - chr4_3:9095658-9095677 Msa0628440:intron 10.0%
!!! TTTTTTTTCATATGTTTTAT+GGG - chr4_3:9095659-9095678 Msa0628440:intron 10.0%
!! AATACAATTCATAGAAAAAT+GGG + chr4_3:9094277-9094296 None:intergenic 15.0%
!! AAATACAATTCATAGAAAAA+TGG + chr4_3:9094278-9094297 None:intergenic 15.0%
!! TCAATTTCTCAAATTAATAT+CGG - chr4_3:9094757-9094776 Msa0628440:CDS 15.0%
!! CATAGATATATTAATTAACT+AGG + chr4_3:9095397-9095416 None:intergenic 15.0%
!! TTTACTAAATATGATACATA+AGG - chr4_3:9095821-9095840 Msa0628440:intron 15.0%
!! TTACTAAATATGATACATAA+GGG - chr4_3:9095822-9095841 Msa0628440:intron 15.0%
!! ATAAGTTGTTTATCCAAATA+GGG - chr4_3:9095085-9095104 Msa0628440:intron 20.0%
!!! CCATTTTCTCAAATTATTAT+CGG - chr4_3:9095327-9095346 Msa0628440:intron 20.0%
!! ACATACTTTATGTACTAATT+AGG + chr4_3:9095486-9095505 None:intergenic 20.0%
!! TATTTAGTAAAATTACACCA+AGG + chr4_3:9095812-9095831 None:intergenic 20.0%
!! TACTAAATATGATACATAAG+GGG - chr4_3:9095823-9095842 Msa0628440:intron 20.0%
!! CAAAGATAGTAATATTACAT+AGG + chr4_3:9095926-9095945 None:intergenic 20.0%
!! TATAACTAAAATGTACTCAA+GGG + chr4_3:9097185-9097204 None:intergenic 20.0%
!! ATATAACTAAAATGTACTCA+AGG + chr4_3:9097186-9097205 None:intergenic 20.0%
!! ATCAAATTTATCTGTATTCT+CGG - chr4_3:9097210-9097229 Msa0628440:five_prime_UTR 20.0%
!! TCAAATTTGTGTCATTATTC+AGG - chr4_3:9094228-9094247 Msa0628440:three_prime_UTR 25.0%
!! GGATTTTGTAAAAACAATCA+TGG + chr4_3:9094256-9094275 None:intergenic 25.0%
! GATAAGTTGTTTATCCAAAT+AGG - chr4_3:9095084-9095103 Msa0628440:intron 25.0%
! CGAAAAATTGTCATATACTT+CGG + chr4_3:9095181-9095200 None:intergenic 25.0%
! CCGATAATAATTTGAGAAAA+TGG + chr4_3:9095330-9095349 None:intergenic 25.0%
! ATACTTGAGATTTACTTGAA+TGG + chr4_3:9095453-9095472 None:intergenic 25.0%
!! AGACGAATTTTCATATACTT+CGG + chr4_3:9095561-9095580 None:intergenic 25.0%
!!! GTTAGTTCTTAGGATTTTAA+CGG - chr4_3:9095582-9095601 Msa0628440:intron 25.0%
! AGTAATATTACATAGGAACT+TGG + chr4_3:9095919-9095938 None:intergenic 25.0%
!! CAATTTTCTCAATCTATTAG+TGG + chr4_3:9096101-9096120 None:intergenic 25.0%
!! CATCCTTGAAAAATTTGTTT+CGG - chr4_3:9096350-9096369 Msa0628440:intron 25.0%
! ATTATCAATCTTTCTGTGAT+AGG - chr4_3:9096384-9096403 Msa0628440:intron 25.0%
!!! TACCCTTTTTTTATGTCAAT+TGG - chr4_3:9096702-9096721 Msa0628440:intron 25.0%
! TGCCAATTGACATAAAAAAA+GGG + chr4_3:9096707-9096726 None:intergenic 25.0%
! TATATCCAAATACCATATGA+AGG - chr4_3:9097023-9097042 Msa0628440:intron 25.0%
! ATATCCAAATACCATATGAA+GGG - chr4_3:9097024-9097043 Msa0628440:intron 25.0%
! ACTTTAGAGATTAAACCAAG+AGG - chr4_3:9094484-9094503 Msa0628440:CDS 30.0%
GTATCTTAACATGTAACTAG+TGG - chr4_3:9095211-9095230 Msa0628440:intron 30.0%
GTATGGTGTTTGGTAAAAAA+TGG - chr4_3:9095786-9095805 Msa0628440:intron 30.0%
!!! TGTCACTTTTTAGACTTTTG+AGG - chr4_3:9095876-9095895 Msa0628440:intron 30.0%
!!! CGAAACAAATTTTTCAAGGA+TGG + chr4_3:9096352-9096371 None:intergenic 30.0%
! AAGCCGAAACAAATTTTTCA+AGG + chr4_3:9096356-9096375 None:intergenic 30.0%
CTGCCAATTGACATAAAAAA+AGG + chr4_3:9096708-9096727 None:intergenic 30.0%
GTAAAATTGGAATGCATTTC+TGG - chr4_3:9096901-9096920 Msa0628440:CDS 30.0%
CTATGGAAGTAAAGAGATAA+AGG + chr4_3:9096941-9096960 None:intergenic 30.0%
TACATATTTCACCCTTCATA+TGG + chr4_3:9097038-9097057 None:intergenic 30.0%
TATGAAGGGTGAAATATGTA+AGG - chr4_3:9097038-9097057 Msa0628440:intron 30.0%
CACGAGTAGCAAAAATATAA+AGG + chr4_3:9097073-9097092 None:intergenic 30.0%
! ATTGTTCTGTGAGTTTTCAG+AGG + chr4_3:9094209-9094228 None:intergenic 35.0%
ACTAGTGATTCAAGCATGAT+TGG - chr4_3:9094364-9094383 Msa0628440:CDS 35.0%
TCAAGCATGATTGGAAATGT+TGG - chr4_3:9094373-9094392 Msa0628440:CDS 35.0%
GTAACACAAAACAGAACCTT+GGG + chr4_3:9094407-9094426 None:intergenic 35.0%
TCTCAAGTTTCCGAAGTTTA+TGG - chr4_3:9094455-9094474 Msa0628440:CDS 35.0%
CTCAAGTTTCCGAAGTTTAT+GGG - chr4_3:9094456-9094475 Msa0628440:CDS 35.0%
TCAAGTTTCCGAAGTTTATG+GGG - chr4_3:9094457-9094476 Msa0628440:CDS 35.0%
AAGTATGTCCCCATAAACTT+CGG + chr4_3:9094468-9094487 None:intergenic 35.0%
! ACTTCTTCGATTTGAAGCAT+TGG + chr4_3:9094675-9094694 None:intergenic 35.0%
ATACTTGAGATTTACTCGCA+CGG + chr4_3:9094861-9094880 None:intergenic 35.0%
! TTGTGTGAGCTTCTTTTGAA+GGG - chr4_3:9094944-9094963 Msa0628440:CDS 35.0%
TTAGAGACTAAGTCCCTATT+TGG + chr4_3:9095101-9095120 None:intergenic 35.0%
! AATTCGTCTCGTTAGTTCTT+AGG - chr4_3:9095572-9095591 Msa0628440:intron 35.0%
!! GTTCTTAGGATTTTAACGGT+AGG - chr4_3:9095586-9095605 Msa0628440:intron 35.0%
TAGGCTAGGGATTAATATGA+TGG - chr4_3:9095605-9095624 Msa0628440:intron 35.0%
!! TTTTATGGGCTAAGTAAGTG+AGG - chr4_3:9095673-9095692 Msa0628440:intron 35.0%
ATATTCGAGGAACTAAATCG+AGG - chr4_3:9095701-9095720 Msa0628440:intron 35.0%
TATTCGAGGAACTAAATCGA+GGG - chr4_3:9095702-9095721 Msa0628440:intron 35.0%
! TTTTACCAAACACCATACAC+AGG + chr4_3:9095784-9095803 None:intergenic 35.0%
TGTTTGGTAAAAAATGGCCT+TGG - chr4_3:9095792-9095811 Msa0628440:intron 35.0%
AAGTCAAGCTCTCCTTAAAT+GGG - chr4_3:9095997-9096016 Msa0628440:intron 35.0%
CTGAAATCCATTCCCATTTA+AGG + chr4_3:9096012-9096031 None:intergenic 35.0%
AATCACTACCTATGAAGCAT+TGG - chr4_3:9096041-9096060 Msa0628440:intron 35.0%
ACTATGACAGATCAGATACT+GGG + chr4_3:9096232-9096251 None:intergenic 35.0%
CAATCTTTCTGTGATAGGAA+TGG - chr4_3:9096389-9096408 Msa0628440:intron 35.0%
!! CATCAAGCCTACTTTTAAGT+GGG - chr4_3:9096433-9096452 Msa0628440:intron 35.0%
!! ATCAAGCCTACTTTTAAGTG+GGG - chr4_3:9096434-9096453 Msa0628440:intron 35.0%
AACTCGAATGCCTCAATAAA+CGG + chr4_3:9096675-9096694 None:intergenic 35.0%
ACGTGAAATCTGAAGAAATG+AGG + chr4_3:9096801-9096820 None:intergenic 35.0%
TATCTCGATTAACATTCCGA+CGG + chr4_3:9096826-9096845 None:intergenic 35.0%
TTCACCCTTCATATGGTATT+TGG + chr4_3:9097031-9097050 None:intergenic 35.0%
AAGGGTGAAATATGTAAGGA+AGG - chr4_3:9097042-9097061 Msa0628440:intron 35.0%
TGTTAAGCAGAACCATAGAA+TGG - chr4_3:9097109-9097128 Msa0628440:intron 35.0%
! CAAACTGATTAGCCATTCTA+TGG + chr4_3:9097124-9097143 None:intergenic 35.0%
CTCAAGGGAAAATATCAAAG+AGG + chr4_3:9097170-9097189 None:intergenic 35.0%
AATGTTGGCACTATATCCCA+AGG - chr4_3:9094388-9094407 Msa0628440:CDS 40.0%
CGTAACACAAAACAGAACCT+TGG + chr4_3:9094408-9094427 None:intergenic 40.0%
! AAACCAAGAGGTATGTTGCT+TGG - chr4_3:9094496-9094515 Msa0628440:CDS 40.0%
! ACACCTTCGATCTGAAATGT+CGG + chr4_3:9094575-9094594 None:intergenic 40.0%
TTAACTACATGTGCCAGTGT+CGG + chr4_3:9094721-9094740 None:intergenic 40.0%
TATCACTCAGTCTCCTACTT+AGG - chr4_3:9094878-9094897 Msa0628440:CDS 40.0%
ATCACTCAGTCTCCTACTTA+GGG - chr4_3:9094879-9094898 Msa0628440:CDS 40.0%
ACTACAAAGAGACCCTAAGT+AGG + chr4_3:9094894-9094913 None:intergenic 40.0%
! GTTGTGTGAGCTTCTTTTGA+AGG - chr4_3:9094943-9094962 Msa0628440:CDS 40.0%
GTGGACTTCAGATAGATAGA+AGG - chr4_3:9095230-9095249 Msa0628440:intron 40.0%
!! TAGGATTTTAACGGTAGGCT+AGG - chr4_3:9095591-9095610 Msa0628440:intron 40.0%
!! AGGATTTTAACGGTAGGCTA+GGG - chr4_3:9095592-9095611 Msa0628440:intron 40.0%
CTAAATGTCATTGCAGAGCA+TGG + chr4_3:9095739-9095758 None:intergenic 40.0%
GACCATTGTTTACCTGTGTA+TGG - chr4_3:9095769-9095788 Msa0628440:intron 40.0%
CACCATACACAGGTAAACAA+TGG + chr4_3:9095774-9095793 None:intergenic 40.0%
GTTTACCTGTGTATGGTGTT+TGG - chr4_3:9095776-9095795 Msa0628440:intron 40.0%
! ATATGATACATAAGGGGCAC+TGG - chr4_3:9095829-9095848 Msa0628440:intron 40.0%
ATTATATATCCGTGCCTCTG+GGG + chr4_3:9095964-9095983 None:intergenic 40.0%
CATTATATATCCGTGCCTCT+GGG + chr4_3:9095965-9095984 None:intergenic 40.0%
ACATTATATATCCGTGCCTC+TGG + chr4_3:9095966-9095985 None:intergenic 40.0%
GAAGTCAAGCTCTCCTTAAA+TGG - chr4_3:9095996-9096015 Msa0628440:intron 40.0%
AAGCTCTCCTTAAATGGGAA+TGG - chr4_3:9096002-9096021 Msa0628440:intron 40.0%
TCTCTATGCCAATGCTTCAT+AGG + chr4_3:9096052-9096071 None:intergenic 40.0%
CTATAGCGAACTACATGCAT+CGG - chr4_3:9096131-9096150 Msa0628440:intron 40.0%
GACTATGACAGATCAGATAC+TGG + chr4_3:9096233-9096252 None:intergenic 40.0%
! ACTGTAGGAATTGTTGACTG+CGG - chr4_3:9096307-9096326 Msa0628440:intron 40.0%
TTGACTGCGGTGCTTATATT+TGG - chr4_3:9096320-9096339 Msa0628440:intron 40.0%
!! GCATCAAGCCTACTTTTAAG+TGG - chr4_3:9096432-9096451 Msa0628440:intron 40.0%
!! TCAAGCCTACTTTTAAGTGG+GGG - chr4_3:9096435-9096454 Msa0628440:intron 40.0%
TTTGACCCCCACTTAAAAGT+AGG + chr4_3:9096443-9096462 None:intergenic 40.0%
!! CATCTTGGTTTTCTGGTCAT+CGG + chr4_3:9096567-9096586 None:intergenic 40.0%
GATGGATAGGCAAGAGATAA+GGG + chr4_3:9096614-9096633 None:intergenic 40.0%
! TGATGGATAGGCAAGAGATA+AGG + chr4_3:9096615-9096634 None:intergenic 40.0%
TTATCTCTTGCCTATCCATC+AGG - chr4_3:9096614-9096633 Msa0628440:intron 40.0%
CAATCTTCACCCGTTTATTG+AGG - chr4_3:9096662-9096681 Msa0628440:intron 40.0%
ACTCGAATGCCTCAATAAAC+GGG + chr4_3:9096674-9096693 None:intergenic 40.0%
TATGCTATGAGAGACCATCT+AGG + chr4_3:9096735-9096754 None:intergenic 40.0%
TTGCGTATCTTACCATTGTG+AGG - chr4_3:9096763-9096782 Msa0628440:intron 40.0%
! CCATTCTTTTCTCCTCACAA+TGG + chr4_3:9096778-9096797 None:intergenic 40.0%
CCATTGTGAGGAGAAAAGAA+TGG - chr4_3:9096775-9096794 Msa0628440:intron 40.0%
! AGATAGCCTTGCAAGTTACA+GGG - chr4_3:9096841-9096860 Msa0628440:intron 40.0%
GGGTTCTATTGGGGTAAAAT+TGG - chr4_3:9096888-9096907 Msa0628440:intron 40.0%
TTACTTCCATAGAGTGCGTT+AGG - chr4_3:9096949-9096968 Msa0628440:CDS 40.0%
ATCCGCATACATACCAGTAA+GGG + chr4_3:9096979-9096998 None:intergenic 40.0%
TATCCGCATACATACCAGTA+AGG + chr4_3:9096980-9096999 None:intergenic 40.0%
ATGCTGCATCACAGACAAAA+GGG + chr4_3:9097004-9097023 None:intergenic 40.0%
TATGCTGCATCACAGACAAA+AGG + chr4_3:9097005-9097024 None:intergenic 40.0%
CTTGAGACAGAAACCTTAGC+AGG + chr4_3:9094442-9094461 None:intergenic 45.0%
CAACCAAGCAACATACCTCT+TGG + chr4_3:9094502-9094521 None:intergenic 45.0%
AGTGTCTGATGTCTGAGTGT+CGG - chr4_3:9094692-9094711 Msa0628440:CDS 45.0%
! ATCGGTGTTCATGTGAGTGT+TGG - chr4_3:9094775-9094794 Msa0628440:CDS 45.0%
CTCGCACGGTAAATCTAGTA+TGG + chr4_3:9094847-9094866 None:intergenic 45.0%
!! GTCAGTGTAGTGTTGATGTC+CGG + chr4_3:9095275-9095294 None:intergenic 45.0%
! CGAAGTGTGAGTGTTGTGTT+TGG - chr4_3:9095354-9095373 Msa0628440:intron 45.0%
AAGTGAGGAAGCGATATTCG+AGG - chr4_3:9095688-9095707 Msa0628440:intron 45.0%
!! ATCGGTGTCTTCTGAAGTGT+CGG - chr4_3:9096149-9096168 Msa0628440:intron 45.0%
AGTCAGCTGATCAAAGTCGT+TGG + chr4_3:9096281-9096300 None:intergenic 45.0%
CGATGACCAGAAAACCAAGA+TGG - chr4_3:9096565-9096584 Msa0628440:intron 45.0%
TGACCAGAAAACCAAGATGG+TGG - chr4_3:9096568-9096587 Msa0628440:intron 45.0%
! TACATCCACACCTGATGGAT+AGG + chr4_3:9096627-9096646 None:intergenic 45.0%
TAGCATACATCCACACCTGA+TGG + chr4_3:9096632-9096651 None:intergenic 45.0%
CAATTGGCAGTCTACCTAGA+TGG - chr4_3:9096718-9096737 Msa0628440:intron 45.0%
TTCAGATTTCACGTTGCCGT+CGG - chr4_3:9096807-9096826 Msa0628440:intron 45.0%
! GAGATAGCCTTGCAAGTTAC+AGG - chr4_3:9096840-9096859 Msa0628440:intron 45.0%
TGCCCTTACTGGTATGTATG+CGG - chr4_3:9096974-9096993 Msa0628440:CDS 45.0%
CGCTTGTCAAATGCCTGCTA+AGG - chr4_3:9094426-9094445 Msa0628440:CDS 50.0%
! GCACCGACATTTCAGATCGA+AGG - chr4_3:9094569-9094588 Msa0628440:CDS 50.0%
TTCCTTAACCAATGCCCCAG+AGG - chr4_3:9095947-9095966 Msa0628440:intron 50.0%
CAGCTGACTGTAGTGACTGT+AGG - chr4_3:9096292-9096311 Msa0628440:intron 50.0%
! TTCGCTGCGCAAGTCTTGTA+GGG - chr4_3:9096494-9096513 Msa0628440:intron 50.0%
AGCCTTCCTTCATTGCTCGA+GGG + chr4_3:9096521-9096540 None:intergenic 50.0%
ATGAAGGAAGGCTCATCTGC+TGG - chr4_3:9096528-9096547 Msa0628440:intron 50.0%
!! CTTGGTTTTCTGGTCATCGG+AGG + chr4_3:9096564-9096583 None:intergenic 50.0%
!! CCACCACCATCTTGGTTTTC+TGG + chr4_3:9096574-9096593 None:intergenic 50.0%
! CCAGAAAACCAAGATGGTGG+TGG - chr4_3:9096571-9096590 Msa0628440:intron 50.0%
AGTGTTCTCCACCACCATCT+TGG + chr4_3:9096582-9096601 None:intergenic 50.0%
TCTTGCCTATCCATCAGGTG+TGG - chr4_3:9096619-9096638 Msa0628440:intron 50.0%
! CACAAGCCCTGTAACTTGCA+AGG + chr4_3:9096850-9096869 None:intergenic 50.0%
GATGCCACTGGGGTTCTATT+GGG - chr4_3:9096878-9096897 Msa0628440:intron 50.0%
ATGCCACTGGGGTTCTATTG+GGG - chr4_3:9096879-9096898 Msa0628440:intron 50.0%
TTACCCCAATAGAACCCCAG+TGG + chr4_3:9096885-9096904 None:intergenic 50.0%
!! TGCCTCTGGGGCATTGGTTA+AGG + chr4_3:9095952-9095971 None:intergenic 55.0%
TAACCAATGCCCCAGAGGCA+CGG - chr4_3:9095952-9095971 Msa0628440:intron 55.0%
TGCGCAGCGAAGGTAACACA+GGG + chr4_3:9096485-9096504 None:intergenic 55.0%
TTGCGCAGCGAAGGTAACAC+AGG + chr4_3:9096486-9096505 None:intergenic 55.0%
CTACAAGACTTGCGCAGCGA+AGG + chr4_3:9096495-9096514 None:intergenic 55.0%
! CTTCGCTGCGCAAGTCTTGT+AGG - chr4_3:9096493-9096512 Msa0628440:intron 55.0%
GCCTTCCTTCATTGCTCGAG+GGG + chr4_3:9096520-9096539 None:intergenic 55.0%
GAGCCTTCCTTCATTGCTCG+AGG + chr4_3:9096522-9096541 None:intergenic 55.0%
TTACAGGGCTTGTGAGCCGT+TGG - chr4_3:9096856-9096875 Msa0628440:intron 55.0%
AGAACCCCAGTGGCATCCAA+CGG + chr4_3:9096875-9096894 None:intergenic 55.0%
GGATGCCACTGGGGTTCTAT+TGG - chr4_3:9096877-9096896 Msa0628440:intron 55.0%
GGCACACCTAACGCACTCTA+TGG + chr4_3:9096958-9096977 None:intergenic 55.0%
TGCGTTAGGTGTGCCCTTAC+TGG - chr4_3:9096963-9096982 Msa0628440:CDS 55.0%
!! TGAGTGTCGGACACCGACAC+TGG - chr4_3:9094705-9094724 Msa0628440:CDS 60.0%
CGTGTCCTGTGTCTGAGTGC+CGG - chr4_3:9095253-9095272 Msa0628440:intron 60.0%
GATGTCCGGCACTCAGACAC+AGG + chr4_3:9095261-9095280 None:intergenic 60.0%
!! TATCCGTGCCTCTGGGGCAT+TGG + chr4_3:9095958-9095977 None:intergenic 60.0%
TAGGGCCCCTCGAGCAATGA+AGG - chr4_3:9096512-9096531 Msa0628440:intron 60.0%
GCCCCTCGAGCAATGAAGGA+AGG - chr4_3:9096516-9096535 Msa0628440:intron 60.0%
TGTGAGCCGTTGGATGCCAC+TGG - chr4_3:9096866-9096885 Msa0628440:intron 60.0%
GTGAGCCGTTGGATGCCACT+GGG - chr4_3:9096867-9096886 Msa0628440:intron 60.0%
TGAGCCGTTGGATGCCACTG+GGG - chr4_3:9096868-9096887 Msa0628440:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 9094166 9097233 9094166 ID=Msa0628440;Name=Msa0628440
chr4_3 mRNA 9094166 9097233 9094166 ID=Msa0628440-mRNA-1;Parent=Msa0628440;Name=Msa0628440-mRNA-1;_AED=0.35;_eAED=0.35;_QI=94|1|1|1|0.5|0.66|3|184|256
chr4_3 exon 9094166 9094993 9094166 ID=Msa0628440-mRNA-1:exon:2764;Parent=Msa0628440-mRNA-1
chr4_3 exon 9096894 9097030 9096894 ID=Msa0628440-mRNA-1:exon:2763;Parent=Msa0628440-mRNA-1
chr4_3 exon 9097150 9097233 9097150 ID=Msa0628440-mRNA-1:exon:2762;Parent=Msa0628440-mRNA-1
chr4_3 five_prime_UTR 9097150 9097233 9097150 ID=Msa0628440-mRNA-1:five_prime_utr;Parent=Msa0628440-mRNA-1
chr4_3 five_prime_UTR 9097021 9097030 9097021 ID=Msa0628440-mRNA-1:five_prime_utr;Parent=Msa0628440-mRNA-1
chr4_3 CDS 9096894 9097020 9096894 ID=Msa0628440-mRNA-1:cds;Parent=Msa0628440-mRNA-1
chr4_3 CDS 9094350 9094993 9094350 ID=Msa0628440-mRNA-1:cds;Parent=Msa0628440-mRNA-1
chr4_3 three_prime_UTR 9094166 9094349 9094166 ID=Msa0628440-mRNA-1:three_prime_utr;Parent=Msa0628440-mRNA-1
Gene Sequence

>Msa0628440

ATGATTGGAAATGTTGGCACTATATCCCAAGGTTCTGTTTTGTGTTACGCTTGTCAAATGCCTGCTAAGGTTTCTGTCTCAAGTTTCCGAAGTTTATGGGGACATACTTTAGAGATTAAACCAAGAGGAATGGCATACACAGACATGTCTTCTGCATCAAGCCTACTTTTAAGTGGGGGTCAAAATCTTCTATCTCGTACTATCCCTGTGTTACCTTCGCTGCGCAAGTCTTGTAGGGCCCCTCGAGCAATGAAGGAAGGCTCATCTGCTGGCTTTAAGTTTCCTCCGATGACCAGAAAACCAAGATGGTGGTGGAGAACACTAGCATGCATCCCTTATCTCTTGCCTATCCATCAGGTGTGGATGTATGCTAAGACAGCATACAATCTTCACCCGTTTATTGAGGCATTCGAGTTCTTAACGTACCCTTTTTTTATGTCAATTGGCAGTCTACCTAGATGGTCTCTCATAGCATACTTCTTGATTGCGTATCTTACCATTGTGAGGAGAAAAGAATGGCCTCATTTCTTCAGATTTCACGTTGCCGTCGGAATGTTAATCGAGATAGCCTTGCAAGTTACAGGGCTTGTGAGCCGTTGGATGCCACTGGGGTTCTATTGGGGTAAAATTGGAATGCATTTCTGGACTACTGCATTTTTCCTTTATCTCTTTACTTCCATAGAGTGCGTTAGGTGTGCCCTTACTGGTATGTATGCGGATATCCCTTTTGTCTGTGATGCAGCATATATCCAAATACCATATGAAGGGTGA

Protein sequence

>Msa0628440

MIGNVGTISQGSVLCYACQMPAKVSVSSFRSLWGHTLEIKPRGMAYTDMSSASSLLLSGGQNLLSRTIPVLPSLRKSCRAPRAMKEGSSAGFKFPPMTRKPRWWWRTLACIPYLLPIHQVWMYAKTAYNLHPFIEAFEFLTYPFFMSIGSLPRWSLIAYFLIAYLTIVRRKEWPHFFRFHVAVGMLIEIALQVTGLVSRWMPLGFYWGKIGMHFWTTAFFLYLFTSIECVRCALTGMYADIPFVCDAAYIQIPYEG*