AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1373570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373570 MtrunA17_Chr4g0065081 96.694 242 8 0 2 243 4 245 1.68e-174 479
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373570 AT2G47910.1 64.435 239 75 3 10 238 7 245 3.20e-110 317
Msa1373570 AT2G47910.2 73.333 180 45 1 62 238 18 197 1.16e-98 286

Find 72 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACTGTATTAACCGTTTC+TGG 0.145020 tig0019439:+178442 Msa1373570:five_prime_UTR
CATACATTGGATCATATATT+AGG 0.194530 tig0019439:-180652 None:intergenic
CATTCCCAAACCTGAATTAA+AGG 0.229005 tig0019439:+180184 Msa1373570:CDS
CCACGTTGATGACGAGAAAT+TGG 0.265812 tig0019439:-178584 None:intergenic
GTTGCAGATGAATATGAAAA+TGG 0.279549 tig0019439:+180079 Msa1373570:intron
ATGGCAAGAATGCTTGGTTT+TGG 0.299846 tig0019439:+180215 Msa1373570:CDS
CTATATTCCAAAACGATCTA+TGG 0.300602 tig0019439:-180507 None:intergenic
GAAGCAATGGTCTGAATCTA+AGG 0.301805 tig0019439:-178502 None:intergenic
TGAATTAAAGGCAAATAATA+TGG 0.311105 tig0019439:+180196 Msa1373570:CDS
AGAGGGGAAGTGGTTTGTTT+TGG 0.313531 tig0019439:-178542 None:intergenic
ATATTATTTGCCTTTAATTC+AGG 0.322155 tig0019439:-180194 None:intergenic
TTTGCCTTTAATTCAGGTTT+GGG 0.337376 tig0019439:-180188 None:intergenic
ACTCTCCGATCTATCATAGA+AGG 0.340744 tig0019439:+180573 Msa1373570:three_prime_UTR
ATTTGCCTTTAATTCAGGTT+TGG 0.341208 tig0019439:-180189 None:intergenic
AAAGTGTAGAAACAAATTAA+TGG 0.343866 tig0019439:+178472 Msa1373570:exon
TTGCGATCCATAGATCGTTT+TGG 0.361984 tig0019439:+180481 Msa1373570:three_prime_UTR
GAATTTCTTGAGCGCTCAAT+TGG 0.362235 tig0019439:+179612 Msa1373570:CDS
AGTATCCTGATATTAGACTA+TGG 0.405584 tig0019439:+179688 Msa1373570:CDS
ACAAACCATAGTCTAATATC+AGG 0.408448 tig0019439:-179693 None:intergenic
AGGGAAAAGCATGAAGTTAG+AGG 0.409056 tig0019439:-178560 None:intergenic
ATACATTGGATCATATATTA+GGG 0.410650 tig0019439:-180651 None:intergenic
ATGCCAGTTGCAGCTTGAAA+AGG 0.412295 tig0019439:-179454 None:intergenic
GATACAACCCTACAACTTCA+AGG 0.417218 tig0019439:+180533 Msa1373570:three_prime_UTR
AATGTATGTCGAAGTGTATC+AGG 0.419732 tig0019439:+180648 Msa1373570:three_prime_UTR
GCTCTCCAATCCAATAAAAC+TGG 0.419972 tig0019439:-179744 None:intergenic
TGCCAGTTGCAGCTTGAAAA+GGG 0.422401 tig0019439:-179453 None:intergenic
ATGATTTGCGTACCAGATAA+GGG 0.429757 tig0019439:-179484 None:intergenic
AATAATATGGCAAGAATGCT+TGG 0.429980 tig0019439:+180209 Msa1373570:CDS
AATGATTTGCGTACCAGATA+AGG 0.441596 tig0019439:-179485 None:intergenic
TGCTATGTTAGTTCCGCATC+AGG 0.443793 tig0019439:+179788 Msa1373570:CDS
GAAGTTTCCTTGTGGGTTGA+AGG 0.453295 tig0019439:-178627 None:intergenic
TGGAATATAGATAATATATG+AGG 0.454585 tig0019439:+180501 Msa1373570:three_prime_UTR
GTCTCTTTATTTGATGATGA+TGG 0.456703 tig0019439:+178653 Msa1373570:CDS
GCATGAAGTTAGAGGGGAAG+TGG 0.457683 tig0019439:-178552 None:intergenic
TCGAATCGGCCTTCAGTTGG+AGG 0.473327 tig0019439:-179388 None:intergenic
ATCTTGTCGTGTATAGTTGA+TGG 0.474003 tig0019439:-179640 None:intergenic
TCCAATAAAACTGGCAACCA+TGG 0.487310 tig0019439:-179735 None:intergenic
ACAAACAGTTCCAATGCCTC+TGG 0.491209 tig0019439:-180116 None:intergenic
GACTTGATGCTGCTTATCCA+TGG 0.492069 tig0019439:+179718 Msa1373570:CDS
ACAACTTCAAGGACAAAACT+TGG 0.492128 tig0019439:+180544 Msa1373570:three_prime_UTR
CGGCCTTCAGTTGGAGGCAT+AGG 0.503641 tig0019439:-179382 None:intergenic
TATTCGTGATAGATAACATA+AGG 0.506430 tig0019439:+178389 Msa1373570:five_prime_UTR
GGTATTTACTCTAGATCAAG+TGG 0.510971 tig0019439:-180275 None:intergenic
ATATTGAGTTGGCAATATCA+TGG 0.512468 tig0019439:+180427 Msa1373570:three_prime_UTR
TATCAATTACAACTTCGAAT+CGG 0.519861 tig0019439:-179402 None:intergenic
GGACTAGAATGATATTGAGT+TGG 0.523066 tig0019439:+180416 Msa1373570:exon
AGACATCGAAGTTTCCTTGT+GGG 0.528434 tig0019439:-178634 None:intergenic
ACTTCGAATCGGCCTTCAGT+TGG 0.531614 tig0019439:-179391 None:intergenic
TTTGGCAAAGGAGATGAAAG+TGG 0.539719 tig0019439:-178524 None:intergenic
GGGAAAAGCATGAAGTTAGA+GGG 0.542061 tig0019439:-178559 None:intergenic
CCTTCAGTTGGAGGCATAGG+AGG 0.545720 tig0019439:-179379 None:intergenic
TTGCAGATGAATATGAAAAT+GGG 0.546953 tig0019439:+180080 Msa1373570:intron
GGAATATAGATAATATATGA+GGG 0.554599 tig0019439:+180502 Msa1373570:three_prime_UTR
TGATACACTTCGACATACAT+TGG 0.558435 tig0019439:-180665 None:intergenic
GGAGAGCTGGAGAGCTAGCT+CGG 0.572069 tig0019439:+179760 Msa1373570:CDS
ATTTATTGTATTACCTGATG+CGG 0.574151 tig0019439:-179801 None:intergenic
GGAAAAGCATGAAGTTAGAG+GGG 0.574365 tig0019439:-178558 None:intergenic
GATACCCTTCTATGATAGAT+CGG 0.575721 tig0019439:-180597 None:intergenic
AGGGTACTAATGTGTCAAGC+TGG 0.576485 tig0019439:-180632 None:intergenic
GGAGATGAAAGTGGAAGCAA+TGG 0.582269 tig0019439:-178515 None:intergenic
CTCTCCGATCTATCATAGAA+GGG 0.591302 tig0019439:+180574 Msa1373570:three_prime_UTR
CCTCCTATGCCTCCAACTGA+AGG 0.594495 tig0019439:+179379 Msa1373570:CDS
GTTGATGACGAGAAATTGGA+AGG 0.599353 tig0019439:-178580 None:intergenic
GCCAGTTGCAGCTTGAAAAG+GGG 0.608468 tig0019439:-179452 None:intergenic
GAGACATCGAAGTTTCCTTG+TGG 0.622426 tig0019439:-178635 None:intergenic
CTTGAAAAGGGGTTAAGTCA+AGG 0.630683 tig0019439:-179441 None:intergenic
GAGCGCTCAAGAAATTCTTG+TGG 0.636416 tig0019439:-179606 None:intergenic
TTGATGACGAGAAATTGGAA+GGG 0.641000 tig0019439:-178579 None:intergenic
AAGCAATGGTCTGAATCTAA+GGG 0.645376 tig0019439:-178501 None:intergenic
GGATACTCTGATAATTCTCG+AGG 0.647549 tig0019439:-179672 None:intergenic
TCTGTTGCCTTCAACCCACA+AGG 0.648907 tig0019439:+178620 Msa1373570:CDS
CCAATTTCTCGTCATCAACG+TGG 0.655284 tig0019439:+178584 Msa1373570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATGATAAATGATATAAAAA+AGG - tig0019439:178701-178720 None:intergenic 15.0%
!!! AAGTTTTTATTGTATATTCA+TGG + tig0019439:180147-180166 Msa1373570:CDS 15.0%
!! TTGAAATATCAATAATGTAA+GGG - tig0019439:180339-180358 None:intergenic 15.0%
!!! TTTGAAATATCAATAATGTA+AGG - tig0019439:180340-180359 None:intergenic 15.0%
!! AAAGTGTAGAAACAAATTAA+TGG + tig0019439:178472-178491 Msa1373570:exon 20.0%
!!! TTCAATTTTATTCCTGTATT+TGG + tig0019439:178819-178838 Msa1373570:intron 20.0%
!!! TTAGATAAAAGTGTTCAAAT+TGG - tig0019439:178880-178899 None:intergenic 20.0%
!! TTCATTAACCTATAAGTATT+CGG + tig0019439:178949-178968 Msa1373570:intron 20.0%
!!! AAAAGATTAGTTCATTATGT+GGG + tig0019439:179073-179092 Msa1373570:intron 20.0%
!!! TGTACTAACTTTTACAATAA+AGG - tig0019439:179165-179184 None:intergenic 20.0%
!!! TGTCTTAATTGCTTTAATTT+TGG + tig0019439:179521-179540 Msa1373570:intron 20.0%
!!! AGTACTATGGTTTTAAATTA+CGG + tig0019439:179842-179861 Msa1373570:intron 20.0%
!! ACTTTATATAGGAAAATAAG+AGG + tig0019439:180017-180036 Msa1373570:intron 20.0%
!! CTTTATATAGGAAAATAAGA+GGG + tig0019439:180018-180037 Msa1373570:intron 20.0%
!! ATATTATTTGCCTTTAATTC+AGG - tig0019439:180197-180216 None:intergenic 20.0%
!! TGAATTAAAGGCAAATAATA+TGG + tig0019439:180196-180215 Msa1373570:CDS 20.0%
!! TGGAATATAGATAATATATG+AGG + tig0019439:180501-180520 Msa1373570:three_prime_UTR 20.0%
!! GGAATATAGATAATATATGA+GGG + tig0019439:180502-180521 Msa1373570:three_prime_UTR 20.0%
!! ATACATTGGATCATATATTA+GGG - tig0019439:180635-180654 None:intergenic 20.0%
! TATTCGTGATAGATAACATA+AGG + tig0019439:178389-178408 Msa1373570:five_prime_UTR 25.0%
!! TGAACACTTTTATCTAAATG+TGG + tig0019439:178883-178902 Msa1373570:intron 25.0%
! TAACAATTACGGATTTCATT+GGG - tig0019439:179023-179042 None:intergenic 25.0%
!! CAAAAGATTAGTTCATTATG+TGG + tig0019439:179072-179091 Msa1373570:intron 25.0%
! TATCAATTACAACTTCGAAT+CGG - tig0019439:179405-179424 None:intergenic 25.0%
! ATTTATTGTATTACCTGATG+CGG - tig0019439:179804-179823 None:intergenic 25.0%
!!! ATGGTTTTAAATTACGGTTA+TGG + tig0019439:179848-179867 Msa1373570:intron 25.0%
! TTAAATTACGGTTATGGTTA+TGG + tig0019439:179854-179873 Msa1373570:intron 25.0%
!!! ACCTCTAAAATCTTTGTATT+AGG + tig0019439:179952-179971 Msa1373570:intron 25.0%
!!! CCTCTAAAATCTTTGTATTA+GGG + tig0019439:179953-179972 Msa1373570:intron 25.0%
! AACTCAGTAGTACTTTATAT+AGG + tig0019439:180006-180025 Msa1373570:intron 25.0%
! TTGCAGATGAATATGAAAAT+GGG + tig0019439:180080-180099 Msa1373570:intron 25.0%
! ACAATTTCAGGAATCAATTT+AGG - tig0019439:180299-180318 None:intergenic 25.0%
!! AAATTGATTCCTGAAATTGT+AGG + tig0019439:180299-180318 Msa1373570:intron 25.0%
! CATACATTGGATCATATATT+AGG - tig0019439:180636-180655 None:intergenic 25.0%
!! GTCTCTTTATTTGATGATGA+TGG + tig0019439:178653-178672 Msa1373570:CDS 30.0%
TACTATAGTGTTCGATATGT+TGG + tig0019439:178784-178803 Msa1373570:intron 30.0%
ACAAACATTCATCCAAATAC+AGG - tig0019439:178834-178853 None:intergenic 30.0%
TGTTTGTCAAACATACCTTA+TGG + tig0019439:178847-178866 Msa1373570:intron 30.0%
CAAATTGGTATTAAGCCATA+AGG - tig0019439:178865-178884 None:intergenic 30.0%
ATTAACCTATAAGTATTCGG+TGG + tig0019439:178952-178971 Msa1373570:intron 30.0%
AGTACTTTAATTCAGCCTAT+AGG + tig0019439:178975-178994 Msa1373570:intron 30.0%
CTAACAATTACGGATTTCAT+TGG - tig0019439:179024-179043 None:intergenic 30.0%
CAATGAAATCCGTAATTGTT+AGG + tig0019439:179022-179041 Msa1373570:intron 30.0%
AGACACAATCAATTTGACAA+TGG + tig0019439:179287-179306 Msa1373570:intron 30.0%
GTAATTCTCTCTGCATTTAA+TGG + tig0019439:179309-179328 Msa1373570:intron 30.0%
GAGCTTATTATACTAAACGA+TGG + tig0019439:179331-179350 Msa1373570:intron 30.0%
AGTATCCTGATATTAGACTA+TGG + tig0019439:179688-179707 Msa1373570:CDS 30.0%
ACAAACCATAGTCTAATATC+AGG - tig0019439:179696-179715 None:intergenic 30.0%
TTTGTGTATGAGTAGTACTA+TGG + tig0019439:179829-179848 Msa1373570:intron 30.0%
! CCCTAATACAAAGATTTTAG+AGG - tig0019439:179956-179975 None:intergenic 30.0%
GTTGCAGATGAATATGAAAA+TGG + tig0019439:180079-180098 Msa1373570:intron 30.0%
! TTTGCCTTTAATTCAGGTTT+GGG - tig0019439:180191-180210 None:intergenic 30.0%
! ATTTGCCTTTAATTCAGGTT+TGG - tig0019439:180192-180211 None:intergenic 30.0%
AATAATATGGCAAGAATGCT+TGG + tig0019439:180209-180228 Msa1373570:CDS 30.0%
! TTTGATAGTCCTACAATTTC+AGG - tig0019439:180311-180330 None:intergenic 30.0%
TAATCAAATTTGTCCCTTGT+TGG + tig0019439:180384-180403 Msa1373570:intron 30.0%
!! ATATTGAGTTGGCAATATCA+TGG + tig0019439:180427-180446 Msa1373570:three_prime_UTR 30.0%
CTATATTCCAAAACGATCTA+TGG - tig0019439:180491-180510 None:intergenic 30.0%
GAAACTGTATTAACCGTTTC+TGG + tig0019439:178442-178461 Msa1373570:five_prime_UTR 35.0%
AAGCAATGGTCTGAATCTAA+GGG - tig0019439:178504-178523 None:intergenic 35.0%
!! TTGATGACGAGAAATTGGAA+GGG - tig0019439:178582-178601 None:intergenic 35.0%
!!! CTAAATGTGGATTTTTAGCC+TGG + tig0019439:178896-178915 Msa1373570:intron 35.0%
AGCTTCAGTCCTAACAATTA+CGG - tig0019439:179034-179053 None:intergenic 35.0%
! AGGTTAGAATTAGTCTCACA+AGG - tig0019439:179145-179164 None:intergenic 35.0%
! TTGACTCGATGTGAAAAAAG+TGG - tig0019439:179212-179231 None:intergenic 35.0%
TTTCACTGCTGAGATAACTT+AGG - tig0019439:179236-179255 None:intergenic 35.0%
! ATGATTTGCGTACCAGATAA+GGG - tig0019439:179487-179506 None:intergenic 35.0%
! AATGATTTGCGTACCAGATA+AGG - tig0019439:179488-179507 None:intergenic 35.0%
AAATGAACTTAGATGCTTCC+TGG + tig0019439:179561-179580 Msa1373570:intron 35.0%
ACTGTAGTAATGATAACACC+AGG - tig0019439:179582-179601 None:intergenic 35.0%
ATCTTGTCGTGTATAGTTGA+TGG - tig0019439:179643-179662 None:intergenic 35.0%
!! TACTACTGAGTTCTGAATTG+TGG - tig0019439:179998-180017 None:intergenic 35.0%
!! TGTTTTTAATCCAGAGGCAT+TGG + tig0019439:180106-180125 Msa1373570:CDS 35.0%
CATTCCCAAACCTGAATTAA+AGG + tig0019439:180184-180203 Msa1373570:CDS 35.0%
!!! AGAATGCTTGGTTTTGGAAT+TGG + tig0019439:180221-180240 Msa1373570:CDS 35.0%
GGTATTTACTCTAGATCAAG+TGG - tig0019439:180278-180297 None:intergenic 35.0%
GGACTAGAATGATATTGAGT+TGG + tig0019439:180416-180435 Msa1373570:exon 35.0%
! GTTTTGTCCTTGAAGTTGTA+GGG - tig0019439:180543-180562 None:intergenic 35.0%
!! AGTTTTGTCCTTGAAGTTGT+AGG - tig0019439:180544-180563 None:intergenic 35.0%
ACAACTTCAAGGACAAAACT+TGG + tig0019439:180544-180563 Msa1373570:three_prime_UTR 35.0%
GATACCCTTCTATGATAGAT+CGG - tig0019439:180581-180600 None:intergenic 35.0%
TGATACACTTCGACATACAT+TGG - tig0019439:180649-180668 None:intergenic 35.0%
AATGTATGTCGAAGTGTATC+AGG + tig0019439:180648-180667 Msa1373570:three_prime_UTR 35.0%
GAAGCAATGGTCTGAATCTA+AGG - tig0019439:178505-178524 None:intergenic 40.0%
TTTGGCAAAGGAGATGAAAG+TGG - tig0019439:178527-178546 None:intergenic 40.0%
!!! GAAGTGGTTTGTTTTGGCAA+AGG - tig0019439:178539-178558 None:intergenic 40.0%
! GGAAAAGCATGAAGTTAGAG+GGG - tig0019439:178561-178580 None:intergenic 40.0%
! GGGAAAAGCATGAAGTTAGA+GGG - tig0019439:178562-178581 None:intergenic 40.0%
! AGGGAAAAGCATGAAGTTAG+AGG - tig0019439:178563-178582 None:intergenic 40.0%
!! GTTGATGACGAGAAATTGGA+AGG - tig0019439:178583-178602 None:intergenic 40.0%
AGACATCGAAGTTTCCTTGT+GGG - tig0019439:178637-178656 None:intergenic 40.0%
! AGTGTTCGATATGTTGGTCT+TGG + tig0019439:178790-178809 Msa1373570:intron 40.0%
ATGAAGCCGCCAAAAGAAAA+GGG - tig0019439:178934-178953 None:intergenic 40.0%
AATGAAGCCGCCAAAAGAAA+AGG - tig0019439:178935-178954 None:intergenic 40.0%
GTACTCCACCGAATACTTAT+AGG - tig0019439:178960-178979 None:intergenic 40.0%
CCACAAAAATGGCTACCTAT+AGG - tig0019439:178993-179012 None:intergenic 40.0%
!!! CCTATAGGTAGCCATTTTTG+TGG + tig0019439:178990-179009 Msa1373570:intron 40.0%
TGGGAATTGTGCCACAAAAA+TGG - tig0019439:179004-179023 None:intergenic 40.0%
CTTGAAAAGGGGTTAAGTCA+AGG - tig0019439:179444-179463 None:intergenic 40.0%
GGCATGAAAAATCCCTTATC+TGG + tig0019439:179472-179491 Msa1373570:CDS 40.0%
GAATTTCTTGAGCGCTCAAT+TGG + tig0019439:179612-179631 Msa1373570:CDS 40.0%
GGATACTCTGATAATTCTCG+AGG - tig0019439:179675-179694 None:intergenic 40.0%
!! TCCATGGTTGCCAGTTTTAT+TGG + tig0019439:179734-179753 Msa1373570:CDS 40.0%
TCCAATAAAACTGGCAACCA+TGG - tig0019439:179738-179757 None:intergenic 40.0%
!!! GGTTGCCAGTTTTATTGGAT+TGG + tig0019439:179739-179758 Msa1373570:CDS 40.0%
GCTCTCCAATCCAATAAAAC+TGG - tig0019439:179747-179766 None:intergenic 40.0%
!! GTTTTATTGGATTGGAGAGC+TGG + tig0019439:179747-179766 Msa1373570:CDS 40.0%
CGTTATCACAATCGCAATTG+TGG - tig0019439:179924-179943 None:intergenic 40.0%
!!! GGGAGTTGTTTTTAATCCAG+AGG + tig0019439:180100-180119 Msa1373570:CDS 40.0%
! ATGGCAAGAATGCTTGGTTT+TGG + tig0019439:180215-180234 Msa1373570:CDS 40.0%
TGTCCCTTGTTGGTATTTGT+AGG + tig0019439:180394-180413 Msa1373570:intron 40.0%
GTCCCTTGTTGGTATTTGTA+GGG + tig0019439:180395-180414 Msa1373570:intron 40.0%
GTCCCTACAAATACCAACAA+GGG - tig0019439:180400-180419 None:intergenic 40.0%
AGTCCCTACAAATACCAACA+AGG - tig0019439:180401-180420 None:intergenic 40.0%
! TTGCGATCCATAGATCGTTT+TGG + tig0019439:180481-180500 Msa1373570:three_prime_UTR 40.0%
GATACAACCCTACAACTTCA+AGG + tig0019439:180533-180552 Msa1373570:three_prime_UTR 40.0%
ACTCTCCGATCTATCATAGA+AGG + tig0019439:180573-180592 Msa1373570:three_prime_UTR 40.0%
CTCTCCGATCTATCATAGAA+GGG + tig0019439:180574-180593 Msa1373570:three_prime_UTR 40.0%
! CACTTTTCAGCTGCCAGAAA+CGG - tig0019439:178458-178477 None:intergenic 45.0%
GGAGATGAAAGTGGAAGCAA+TGG - tig0019439:178518-178537 None:intergenic 45.0%
!!! AGAGGGGAAGTGGTTTGTTT+TGG - tig0019439:178545-178564 None:intergenic 45.0%
!! CCACGTTGATGACGAGAAAT+TGG - tig0019439:178587-178606 None:intergenic 45.0%
CCAATTTCTCGTCATCAACG+TGG + tig0019439:178584-178603 Msa1373570:CDS 45.0%
! GAAGTTTCCTTGTGGGTTGA+AGG - tig0019439:178630-178649 None:intergenic 45.0%
GAGACATCGAAGTTTCCTTG+TGG - tig0019439:178638-178657 None:intergenic 45.0%
!!! GTGGATTTTTAGCCTGGACT+TGG + tig0019439:178902-178921 Msa1373570:intron 45.0%
!!! GATTTTTAGCCTGGACTTGG+TGG + tig0019439:178905-178924 Msa1373570:intron 45.0%
! TGGTGGTAGCCCTTTTCTTT+TGG + tig0019439:178922-178941 Msa1373570:intron 45.0%
! TGGTAGCCCTTTTCTTTTGG+CGG + tig0019439:178925-178944 Msa1373570:intron 45.0%
TGCCAGTTGCAGCTTGAAAA+GGG - tig0019439:179456-179475 None:intergenic 45.0%
ATGCCAGTTGCAGCTTGAAA+AGG - tig0019439:179457-179476 None:intergenic 45.0%
GAGCGCTCAAGAAATTCTTG+TGG - tig0019439:179609-179628 None:intergenic 45.0%
! GACTTGATGCTGCTTATCCA+TGG + tig0019439:179718-179737 Msa1373570:CDS 45.0%
TGCTATGTTAGTTCCGCATC+AGG + tig0019439:179788-179807 Msa1373570:CDS 45.0%
ACAAACAGTTCCAATGCCTC+TGG - tig0019439:180119-180138 None:intergenic 45.0%
! AGGGTACTAATGTGTCAAGC+TGG - tig0019439:180616-180635 None:intergenic 45.0%
GCATGAAGTTAGAGGGGAAG+TGG - tig0019439:178555-178574 None:intergenic 50.0%
TCTGTTGCCTTCAACCCACA+AGG + tig0019439:178620-178639 Msa1373570:CDS 50.0%
ACTTCGAATCGGCCTTCAGT+TGG - tig0019439:179394-179413 None:intergenic 50.0%
!! ACCCCTTTTCAAGCTGCAAC+TGG + tig0019439:179451-179470 Msa1373570:CDS 50.0%
GCCAGTTGCAGCTTGAAAAG+GGG - tig0019439:179455-179474 None:intergenic 50.0%
GATAATTCTCGAGGATCGCG+AGG - tig0019439:179666-179685 None:intergenic 50.0%
AAAGGGCTACCACCAAGTCC+AGG - tig0019439:178917-178936 None:intergenic 55.0%
! CCTTCAGTTGGAGGCATAGG+AGG - tig0019439:179382-179401 None:intergenic 55.0%
CCTCCTATGCCTCCAACTGA+AGG + tig0019439:179379-179398 Msa1373570:CDS 55.0%
TCGAATCGGCCTTCAGTTGG+AGG - tig0019439:179391-179410 None:intergenic 55.0%
TAGGGCCGCAATTGCGATTG+CGG + tig0019439:179971-179990 Msa1373570:intron 55.0%
GTGGTCCGCAATCGCAATTG+CGG - tig0019439:179979-179998 None:intergenic 55.0%
! CGGCCTTCAGTTGGAGGCAT+AGG - tig0019439:179385-179404 None:intergenic 60.0%
GGAGAGCTGGAGAGCTAGCT+CGG + tig0019439:179760-179779 Msa1373570:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0019439 gene 178377 180686 178377 ID=Msa1373570;Name=Msa1373570
tig0019439 mRNA 178377 180686 178377 ID=Msa1373570-mRNA-1;Parent=Msa1373570;Name=Msa1373570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=114|1|1|1|0.75|0.6|5|264|244
tig0019439 exon 178377 178674 178377 ID=Msa1373570-mRNA-1:exon:3357;Parent=Msa1373570-mRNA-1
tig0019439 exon 179362 179493 179362 ID=Msa1373570-mRNA-1:exon:3358;Parent=Msa1373570-mRNA-1
tig0019439 exon 179601 179809 179601 ID=Msa1373570-mRNA-1:exon:3359;Parent=Msa1373570-mRNA-1
tig0019439 exon 180086 180288 180086 ID=Msa1373570-mRNA-1:exon:3360;Parent=Msa1373570-mRNA-1
tig0019439 exon 180416 180686 180416 ID=Msa1373570-mRNA-1:exon:3361;Parent=Msa1373570-mRNA-1
tig0019439 five_prime_UTR 178377 178490 178377 ID=Msa1373570-mRNA-1:five_prime_utr;Parent=Msa1373570-mRNA-1
tig0019439 CDS 178491 178674 178491 ID=Msa1373570-mRNA-1:cds;Parent=Msa1373570-mRNA-1
tig0019439 CDS 179362 179493 179362 ID=Msa1373570-mRNA-1:cds;Parent=Msa1373570-mRNA-1
tig0019439 CDS 179601 179809 179601 ID=Msa1373570-mRNA-1:cds;Parent=Msa1373570-mRNA-1
tig0019439 CDS 180086 180288 180086 ID=Msa1373570-mRNA-1:cds;Parent=Msa1373570-mRNA-1
tig0019439 CDS 180416 180422 180416 ID=Msa1373570-mRNA-1:cds;Parent=Msa1373570-mRNA-1
tig0019439 three_prime_UTR 180423 180686 180423 ID=Msa1373570-mRNA-1:three_prime_utr;Parent=Msa1373570-mRNA-1
Gene Sequence

>Msa1373570

ATGGCTACTACCCTTAGATTCAGACCATTGCTTCCACTTTCATCTCCTTTGCCAAAACAAACCACTTCCCCTCTAACTTCATGCTTTTCCCTTCCAATTTCTCGTCATCAACGTGGAAATGTTGCTGTCTCTGTTGCCTTCAACCCACAAGGAAACTTCGATGTCTCTTTATTTGATGATGATGATGAGTCTAAAGTTTCACCTCCTATGCCTCCAACTGAAGGCCGATTCGAAGTTGTAATTGATAATGATGCTATTAGTCGCCTTGACTTAACCCCTTTTCAAGCTGCAACTGGCATGAAAAATCCCTTATCTGTTGAACCACAAGAATTTCTTGAGCGCTCAATTGGATTTACCATCAACTATACACGACAAGATCCTCGCGATCCTCGAGAATTATCAGAGTATCCTGATATTAGACTATGGTTTGTTAGACTTGATGCTGCTTATCCATGGTTGCCAGTTTTATTGGATTGGAGAGCTGGAGAGCTAGCTCGGTATGCTGCTATGTTAGTTCCGCATCAGATGAATATGAAAATGGGAGTTGTTTTTAATCCAGAGGCATTGGAACTGTTTGTTATGAATAAAGTTTTTATTGTATATTCATGGTTGAAGCATCACAACATTCCCAAACCTGAATTAAAGGCAAATAATATGGCAAGAATGCTTGGTTTTGGAATTGGAAGTGAACTATACGACTTAGTTGAGAATCATCCACTTGATCTAGAGGACTAG

Protein sequence

>Msa1373570

MATTLRFRPLLPLSSPLPKQTTSPLTSCFSLPISRHQRGNVAVSVAFNPQGNFDVSLFDDDDESKVSPPMPPTEGRFEVVIDNDAISRLDLTPFQAATGMKNPLSVEPQEFLERSIGFTINYTRQDPRDPRELSEYPDIRLWFVRLDAAYPWLPVLLDWRAGELARYAAMLVPHQMNMKMGVVFNPEALELFVMNKVFIVYSWLKHHNIPKPELKANNMARMLGFGIGSELYDLVENHPLDLED*