AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0029280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0029280 MtrunA17_Chr1g0186021 85.149 505 45 4 1 476 1 504 0.0 846
Msa0029280 MtrunA17_Chr1g0173891 36.890 328 186 5 129 439 1 324 5.52e-63 209
Msa0029280 MtrunA17_Chr8g0380251 35.795 352 201 6 106 439 98 442 9.42e-60 203
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0029280 AT4G17740.1 76.276 392 77 2 99 476 126 515 0.0 617
Msa0029280 AT4G17740.2 76.276 392 77 2 99 476 116 505 0.0 617
Msa0029280 AT3G57680.1 37.183 355 196 7 107 439 121 470 3.46e-69 229
Msa0029280 AT3G57680.3 38.006 321 173 6 140 439 6 321 6.39e-62 206
Msa0029280 AT3G57680.2 38.006 321 173 6 140 439 6 321 6.39e-62 206
Msa0029280 AT5G46390.2 35.593 354 193 8 109 439 125 466 4.41e-53 186
Msa0029280 AT5G46390.1 31.760 233 138 7 109 332 125 345 2.25e-25 108

Find 122 sgRNAs with CRISPR-Local

Find 481 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACAAAACAAAATTATTT+TGG 0.166886 1_1:-54573879 Msa0029280:three_prime_UTR
GGAAGAGAATCTCCTCTTTC+TGG 0.228002 1_1:-54579672 Msa0029280:CDS
ACAACTTACGAGATGCATTT+TGG 0.229630 1_1:+54576844 None:intergenic
TTCTGGCAGGTTTATTTGTT+TGG 0.248338 1_1:+54573742 None:intergenic
TAATGTAAATGCATTTGTTT+TGG 0.265017 1_1:-54575939 Msa0029280:CDS
AAACAAACGTTGTTTACTTT+TGG 0.274441 1_1:+54580730 None:intergenic
CTGTTTGTGCGGTTGGTTGC+TGG 0.295497 1_1:-54580634 Msa0029280:CDS
TGTCTCTTCACGGTTGTTCA+TGG 0.323178 1_1:+54579556 None:intergenic
TTCTTTACTGTTTGTGCGGT+TGG 0.354326 1_1:-54580641 Msa0029280:CDS
ATTGTGAACAATCCCCATTC+TGG 0.356722 1_1:+54573725 None:intergenic
TAGTGAGTGGTTTGAGGCAG+AGG 0.361449 1_1:-54581022 Msa0029280:five_prime_UTR
GGAACTAAAGGCGCTCTAAC+TGG 0.372863 1_1:-54578296 Msa0029280:CDS
ACAAATAAACCTGCCAGAAT+GGG 0.376363 1_1:-54573738 Msa0029280:three_prime_UTR
CAAAATGCATCTTCATCCTT+AGG 0.378658 1_1:+54574005 None:intergenic
TGTTGGCTCTCCGTACAATA+TGG 0.382476 1_1:+54574336 None:intergenic
AACAAATAAACCTGCCAGAA+TGG 0.385953 1_1:-54573739 Msa0029280:three_prime_UTR
TTAATGGACAGAGTTGGTTT+AGG 0.396696 1_1:-54579607 Msa0029280:CDS
TCGTGGGGTTCGAGATATAC+TGG 0.396807 1_1:-54575395 Msa0029280:CDS
TCCTTCGCAGAAGGAGGAAA+TGG 0.400373 1_1:-54580690 Msa0029280:CDS
TTATGCTGCAGGTTTCAAAC+TGG 0.418269 1_1:-54580840 Msa0029280:intron
ATCGGATGGCATGTCTGCTT+TGG 0.427225 1_1:+54578247 None:intergenic
GCTCTATATGCAGGACCTCC+TGG 0.429225 1_1:+54578200 None:intergenic
TTGTACGGAGAGCCAACATT+TGG 0.429603 1_1:-54574331 Msa0029280:CDS
TTCTGAACCTCTGGCTGTGC+TGG 0.435964 1_1:-54575344 Msa0029280:intron
CTGAGAGCTCAAATACTGAT+TGG 0.437609 1_1:+54574216 None:intergenic
GATGTTGGTAGAGGATGGTC+AGG 0.439793 1_1:+54574032 None:intergenic
TTCTGTGCTCATATCATCAA+TGG 0.441209 1_1:+54578148 None:intergenic
GTTGTCATTTCAGCTTCTCC+AGG 0.446510 1_1:-54578218 Msa0029280:CDS
CCTAGCAACTTCTGAACCTC+TGG 0.447872 1_1:-54575353 Msa0029280:CDS
ACTGGAGTGGGGATATCAAT+AGG 0.449955 1_1:-54578278 Msa0029280:CDS
AGAGGAGATTCTCTTCCGTC+AGG 0.456230 1_1:+54579678 None:intergenic
TTGCACAGTCTTGACTTCAC+TGG 0.459820 1_1:+54576927 None:intergenic
TGATATGAGCACAGAAAAGT+TGG 0.461597 1_1:-54578141 Msa0029280:CDS
GTCTCTTCACGGTTGTTCAT+GGG 0.462782 1_1:+54579557 None:intergenic
CTCAAACTTCTGAACTTCTC+AGG 0.466160 1_1:+54578431 None:intergenic
CCAGAGGTTCAGAAGTTGCT+AGG 0.467344 1_1:+54575353 None:intergenic
GGAGAGCCAACATTTGGAAA+AGG 0.469937 1_1:-54574325 Msa0029280:CDS
AAGAAGCAATCAATACGTTC+AGG 0.477783 1_1:-54575967 Msa0029280:CDS
TTCTCCACGCCTCCAGAAAG+AGG 0.478035 1_1:+54579660 None:intergenic
GGGGAATTATTTCCTGCAGC+AGG 0.481562 1_1:+54576900 None:intergenic
TGCTCATATCATCAATGGCC+AGG 0.482743 1_1:+54578153 None:intergenic
TGAGAAGTTCAGAAGTTTGA+GGG 0.485226 1_1:-54578429 Msa0029280:intron
TGTATATTTGTGATAGTCGT+GGG 0.489052 1_1:-54575411 Msa0029280:CDS
CATATGTATCCAGAGGTTTG+TGG 0.494939 1_1:+54573826 None:intergenic
GATGGCATGTCTGCTTTGGT+AGG 0.496814 1_1:+54578251 None:intergenic
AAGTCATACATGTCTCTTCA+CGG 0.503051 1_1:+54579546 None:intergenic
AAGAAAGATGCTTGCCACAT+TGG 0.503483 1_1:-54578480 Msa0029280:CDS
CTTGTTATCTTTCAATGCAC+CGG 0.503714 1_1:+54574363 None:intergenic
TGAACAATCCCCATTCTGGC+AGG 0.504596 1_1:+54573729 None:intergenic
GTTCTGCCTTCACTCTTCCA+TGG 0.505286 1_1:-54580993 Msa0029280:exon
ACAATGTTGCCACAAACCTC+TGG 0.505687 1_1:-54573835 Msa0029280:three_prime_UTR
TGAGTGGTTTGAGGCAGAGG+TGG 0.512701 1_1:-54581019 Msa0029280:five_prime_UTR
TTTGTCTGGAGATGTTATCC+TGG 0.515590 1_1:-54578171 Msa0029280:CDS
GGAAATTACAGAGGACCTGA+TGG 0.515701 1_1:-54577342 Msa0029280:intron
CTGTGCAAGTTACCTGCTGC+AGG 0.516744 1_1:-54576912 Msa0029280:CDS
ACAAGATAGTGAGTGGTTTG+AGG 0.519579 1_1:-54581028 Msa0029280:five_prime_UTR
TGGAGTTATGTTGGTTGTGT+CGG 0.520837 1_1:-54580614 Msa0029280:intron
AAAGGCGCTCTAACTGGAGT+GGG 0.521920 1_1:-54578290 Msa0029280:CDS
GAGAGCCAACATTTGGAAAA+GGG 0.523087 1_1:-54574324 Msa0029280:intron
GGAAATAATTCCCCAACAGT+TGG 0.525940 1_1:-54576891 Msa0029280:CDS
GTTGGTTGCTGGAGTTATGT+TGG 0.526117 1_1:-54580623 Msa0029280:CDS
CAGAGGTTCAGAAGTTGCTA+GGG 0.526166 1_1:+54575354 None:intergenic
TGGTTTGAGGCAGAGGTGGT+AGG 0.527360 1_1:-54581015 Msa0029280:five_prime_UTR
AATGCAACAGAGCTTCCATC+AGG 0.527673 1_1:+54577327 None:intergenic
GTCCCTTGAAGGGGCCCTGA+CGG 0.534821 1_1:-54579693 Msa0029280:intron
CTGAGAAGTTCAGAAGTTTG+AGG 0.536007 1_1:-54578430 Msa0029280:CDS
TTATTATTACACGAAGAAGC+AGG 0.538054 1_1:+54573966 None:intergenic
GTGTATATTTGTGATAGTCG+TGG 0.539212 1_1:-54575412 Msa0029280:CDS
TGAAAACCTTGATTCTACTA+CGG 0.541823 1_1:+54580807 None:intergenic
ATCTCCTCTTTCTGGAGGCG+TGG 0.545789 1_1:-54579664 Msa0029280:CDS
TGAAGGCAGTCTGGAACTAA+AGG 0.547910 1_1:-54578308 Msa0029280:intron
GTTGGAGTTTCCTTCGCAGA+AGG 0.548560 1_1:-54580699 Msa0029280:CDS
TTTGAGCTCTCAGATGGCTC+AGG 0.548752 1_1:-54574206 Msa0029280:CDS
ACGAAGAAGCAGGATCCTGC+AGG 0.552016 1_1:+54573976 None:intergenic
AGAGCTAGCAATGATCTCCA+TGG 0.553066 1_1:+54580976 None:intergenic
GAAATGATGTTGGTAGAGGA+TGG 0.553668 1_1:+54574027 None:intergenic
GGGTAACGAAGAGGGAAAGA+AGG 0.553709 1_1:+54580944 None:intergenic
TTAGGAAATGATGTTGGTAG+AGG 0.554141 1_1:+54574023 None:intergenic
TCCATTTCCTCCTTCTGCGA+AGG 0.555474 1_1:+54580689 None:intergenic
GTCATTTCAGCTTCTCCAGG+AGG 0.556960 1_1:-54578215 Msa0029280:CDS
AACAAGCGGGCCATATTGTA+CGG 0.558030 1_1:-54574346 Msa0029280:CDS
AATTCTTGTCGATATATGCT+CGG 0.570307 1_1:+54579630 None:intergenic
GGAGGTCCTGCATATAGAGC+TGG 0.574441 1_1:-54578197 Msa0029280:CDS
TACGTCAGAACCACTACGTA+TGG 0.575100 1_1:+54577302 None:intergenic
GGAGTTTCCTTCGCAGAAGG+AGG 0.575657 1_1:-54580696 Msa0029280:CDS
TCTACCAACATCATTTCCTA+AGG 0.576557 1_1:-54574021 Msa0029280:CDS
AAAACACCAGCTCTATATGC+AGG 0.578644 1_1:+54578191 None:intergenic
TCAGTATTTGAGCTCTCAGA+TGG 0.579199 1_1:-54574212 Msa0029280:CDS
TGAGCCTAATCAGGTAAACA+AGG 0.584513 1_1:-54574413 Msa0029280:intron
ATGGCATGTCTGCTTTGGTA+GGG 0.587538 1_1:+54578252 None:intergenic
CAGAAGGAGGAAATGGAACA+AGG 0.588765 1_1:-54580683 Msa0029280:CDS
AGTGCCAGCGAAATATTAGC+CGG 0.591253 1_1:-54574382 Msa0029280:CDS
TGCACCGGCTAATATTTCGC+TGG 0.596104 1_1:+54574378 None:intergenic
GATATGAGCACAGAAAAGTT+GGG 0.598281 1_1:-54578140 Msa0029280:CDS
CAAATAAACCTGCCAGAATG+GGG 0.598520 1_1:-54573737 Msa0029280:three_prime_UTR
GAGGAGATTCTCTTCCGTCA+GGG 0.599213 1_1:+54579679 None:intergenic
TGCATTGAAAGATAACAAGC+GGG 0.604470 1_1:-54574359 Msa0029280:CDS
CGAGATATACTGGATACAGA+TGG 0.605141 1_1:-54575385 Msa0029280:CDS
TCATCCTTAGGAAATGATGT+TGG 0.609434 1_1:+54574017 None:intergenic
TAAAGGCGCTCTAACTGGAG+TGG 0.610725 1_1:-54578291 Msa0029280:CDS
GTGCATTGAAAGATAACAAG+CGG 0.614192 1_1:-54574360 Msa0029280:CDS
ATGCTTCTTTACTGTTTGTG+CGG 0.614941 1_1:-54580645 Msa0029280:CDS
TACCAACTTACGTTAGAGCT+AGG 0.615400 1_1:+54577274 None:intergenic
AAAGCAGACATGCCATCCGA+TGG 0.615475 1_1:-54578245 Msa0029280:CDS
TGAAATGACAACAAGTCCAT+CGG 0.616320 1_1:+54578229 None:intergenic
TCCCGAAAATTGAACTAACT+AGG 0.617585 1_1:-54573775 Msa0029280:three_prime_UTR
AGATTGTTGGGTAACGAAGA+GGG 0.618034 1_1:+54580936 None:intergenic
TGATCTCCATGGAAGAGTGA+AGG 0.622114 1_1:+54580987 None:intergenic
TTGTCAATATCTGTGTGCGC+AGG 0.623787 1_1:+54574152 None:intergenic
AAAAGAAACAAGATAGTGAG+TGG 0.624117 1_1:-54581035 Msa0029280:five_prime_UTR
AGAGAATCTCCTCTTTCTGG+AGG 0.626964 1_1:-54579669 Msa0029280:CDS
GAGATTGTTGGGTAACGAAG+AGG 0.630735 1_1:+54580935 None:intergenic
TAAATCACCTATTATCTCTG+AGG 0.651600 1_1:+54575915 None:intergenic
ATGACAACAAGTCCATCGGA+TGG 0.653408 1_1:+54578233 None:intergenic
AAAATTACCAGCACAGCCAG+AGG 0.668041 1_1:+54575337 None:intergenic
GAGCCTAATCAGGTAAACAA+GGG 0.673106 1_1:-54574412 Msa0029280:intron
GTTGCATTGACCATACGTAG+TGG 0.683901 1_1:-54577312 Msa0029280:CDS
CTATCAATTAGGTTGGACAA+AGG 0.690063 1_1:-54575442 Msa0029280:intron
AAGGCGCTCTAACTGGAGTG+GGG 0.697650 1_1:-54578289 Msa0029280:CDS
GTATATTTGTGATAGTCGTG+GGG 0.714608 1_1:-54575410 Msa0029280:CDS
TGCGCACACAGATATTGACA+AGG 0.734805 1_1:-54574150 Msa0029280:intron
AGTGAAGGGATCATCCAATG+TGG 0.753176 1_1:+54578466 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAATTAAATAAAAT+AGG + chr1_1:54573767-54573786 None:intergenic 0.0%
!!! TGAATGTTTTTAAATTTTTA+TGG - chr1_1:54578245-54578264 Msa0029280:CDS 10.0%
!! AAAAAATACAAAAAATTAGT+TGG - chr1_1:54578583-54578602 Msa0029280:intron 10.0%
!! TAAAAACAAGAAAAAAAATA+AGG + chr1_1:54579334-54579353 None:intergenic 10.0%
!!! TATTTTCAAAATGATTTTTT+TGG - chr1_1:54580910-54580929 Msa0029280:intron 10.0%
!!! ATTTTCAAAATGATTTTTTT+GGG - chr1_1:54580911-54580930 Msa0029280:intron 10.0%
!!! TTAACAAAACAAAATTATTT+TGG - chr1_1:54580957-54580976 Msa0029280:CDS 10.0%
!!! ATAAATATTGTTATTTTACG+CGG + chr1_1:54573980-54573999 None:intergenic 15.0%
!!! AAAGTTACTAAATTTTCAAT+TGG - chr1_1:54574076-54574095 Msa0029280:intron 15.0%
!!! AAGTTACTAAATTTTCAATT+GGG - chr1_1:54574077-54574096 Msa0029280:intron 15.0%
!!! AAAGTATTAACTATTGAATA+TGG - chr1_1:54574958-54574977 Msa0029280:intron 15.0%
!!! ACTCTTTATTTTCTTATTAA+TGG - chr1_1:54574994-54575013 Msa0029280:intron 15.0%
!! TTAAACTTTAAGTATCAAAA+TGG - chr1_1:54576141-54576160 Msa0029280:intron 15.0%
!!! TTCAACAAAATTTTAGTTTT+TGG + chr1_1:54576512-54576531 None:intergenic 15.0%
!!! AAAAACTAAAATTTTGTTGA+AGG - chr1_1:54576511-54576530 Msa0029280:intron 15.0%
!! TGATAACTTGATATAAATAT+TGG - chr1_1:54576924-54576943 Msa0029280:CDS 15.0%
!!! ATAAAATTTGGTCTTTTAAA+TGG + chr1_1:54577419-54577438 None:intergenic 15.0%
!!! ATTTTCTTTGTAAAAGAAAA+AGG + chr1_1:54577791-54577810 None:intergenic 15.0%
!!! TCTTTAAAATATTCATTAAC+TGG + chr1_1:54578217-54578236 None:intergenic 15.0%
!!! AATTTTTTATCTTATCATTC+CGG - chr1_1:54579130-54579149 Msa0029280:intron 15.0%
!! AGAAATTAAATAATTGTAAC+CGG + chr1_1:54579152-54579171 None:intergenic 15.0%
!! AATCAATTTAATTGTGATTA+TGG - chr1_1:54580257-54580276 Msa0029280:intron 15.0%
!! ATCAATTTAATTGTGATTAT+GGG - chr1_1:54580258-54580277 Msa0029280:intron 15.0%
!! GTGTAATAATAATAATAACA+GGG - chr1_1:54580881-54580900 Msa0029280:intron 15.0%
!!! AAAATCATTTTGAAAATAAC+TGG + chr1_1:54580908-54580927 None:intergenic 15.0%
!!! AGTTACTAAATTTTCAATTG+GGG - chr1_1:54574078-54574097 Msa0029280:intron 20.0%
!! TCTTTATAATGAATTTGTGT+TGG - chr1_1:54574299-54574318 Msa0029280:intron 20.0%
!! CTGAATATTCAATACTAAAA+TGG - chr1_1:54574837-54574856 Msa0029280:intron 20.0%
!!! TATTTTCTTATTAATGGTTG+AGG - chr1_1:54575000-54575019 Msa0029280:intron 20.0%
!!! TATATCGACAAGAATTTTAA+TGG - chr1_1:54575213-54575232 Msa0029280:intron 20.0%
!!! GTTGATAAAAAAAAAGTAAG+AGG + chr1_1:54575326-54575345 None:intergenic 20.0%
!! TAAAATGGTTTAACTGAAAT+CGG - chr1_1:54575486-54575505 Msa0029280:intron 20.0%
!! TTATCATTGTTAATTATGAG+AGG - chr1_1:54575994-54576013 Msa0029280:intron 20.0%
!! CTATATGTGAAATAAACTAA+GGG + chr1_1:54576459-54576478 None:intergenic 20.0%
!! ACTATATGTGAAATAAACTA+AGG + chr1_1:54576460-54576479 None:intergenic 20.0%
!! AAAAGAGACTTAGAATTAAA+TGG - chr1_1:54577194-54577213 Msa0029280:intron 20.0%
!! AATGGTCTATCTATTATATA+TGG - chr1_1:54577212-54577231 Msa0029280:intron 20.0%
!!! GAAAAAGGTATCAATTAATT+AGG + chr1_1:54577776-54577795 None:intergenic 20.0%
!!! ATTTTATATAACCAACTGTT+GGG + chr1_1:54577959-54577978 None:intergenic 20.0%
!!! AATTTTATATAACCAACTGT+TGG + chr1_1:54577960-54577979 None:intergenic 20.0%
!! TTCTATGTACTAACTAAAAA+AGG - chr1_1:54578045-54578064 Msa0029280:intron 20.0%
!! TCTATGTACTAACTAAAAAA+GGG - chr1_1:54578046-54578065 Msa0029280:intron 20.0%
!! ATTATAGCAAGTAAGAATTA+TGG + chr1_1:54578139-54578158 None:intergenic 20.0%
!!! GATTGTTTCTCTTTATATTT+AGG - chr1_1:54578356-54578375 Msa0029280:intron 20.0%
!! TGAAAAGTAAAATGTGATAT+TGG + chr1_1:54578452-54578471 None:intergenic 20.0%
!!! TAATGTAAATGCATTTGTTT+TGG - chr1_1:54578897-54578916 Msa0029280:intron 20.0%
!! ATCTATTTCAAAATGGTAAA+AGG + chr1_1:54579244-54579263 None:intergenic 20.0%
!! ATGAGAAAATATGTTATCTA+CGG + chr1_1:54579896-54579915 None:intergenic 20.0%
!!! ATATTTTCTCATCTAATTCA+TGG - chr1_1:54579904-54579923 Msa0029280:intron 20.0%
!! CCAAATATACAAAGTATAAA+CGG + chr1_1:54579955-54579974 None:intergenic 20.0%
!!! ATCACAATTAAATTGATTCA+TGG + chr1_1:54580255-54580274 None:intergenic 20.0%
!! TCAATTTAATTGTGATTATG+GGG - chr1_1:54580259-54580278 Msa0029280:intron 20.0%
!! CGTGTAATAATAATAATAAC+AGG - chr1_1:54580880-54580899 Msa0029280:intron 20.0%
! ATAATCAGAATGATGAAGAA+GGG + chr1_1:54573954-54573973 None:intergenic 25.0%
! AATAATCAGAATGATGAAGA+AGG + chr1_1:54573955-54573974 None:intergenic 25.0%
! AATAACAATATTTATGCTGC+AGG - chr1_1:54573985-54574004 Msa0029280:CDS 25.0%
!! AAACAAACGTTGTTTACTTT+TGG + chr1_1:54574109-54574128 None:intergenic 25.0%
! AGAGATAAAACTTACAAGAA+GGG + chr1_1:54574267-54574286 None:intergenic 25.0%
! TAGAGATAAAACTTACAAGA+AGG + chr1_1:54574268-54574287 None:intergenic 25.0%
! AATGAATTTGTGTTGGAATT+TGG - chr1_1:54574306-54574325 Msa0029280:intron 25.0%
! ATGAATTTGTGTTGGAATTT+GGG - chr1_1:54574307-54574326 Msa0029280:intron 25.0%
! TCAGAATGAATTACAAAGAT+AGG + chr1_1:54574821-54574840 None:intergenic 25.0%
! CAAGAGTAAGAGATAAATTT+CGG + chr1_1:54574886-54574905 None:intergenic 25.0%
! ATATAGTACTAGGTAGATTT+GGG + chr1_1:54575043-54575062 None:intergenic 25.0%
! TATATAGTACTAGGTAGATT+TGG + chr1_1:54575044-54575063 None:intergenic 25.0%
!! GCTGAACAAAAACAATTTTA+TGG - chr1_1:54575348-54575367 Msa0029280:CDS 25.0%
! TTAACTATATCAGATAGTTC+TGG + chr1_1:54575595-54575614 None:intergenic 25.0%
! TATCTGATATAGTTAAATGC+TGG - chr1_1:54575599-54575618 Msa0029280:intron 25.0%
! TAATCTACAACAAATTGCTT+TGG - chr1_1:54575637-54575656 Msa0029280:intron 25.0%
! TCAAATTTGTGAAGATAAGT+AGG - chr1_1:54575710-54575729 Msa0029280:intron 25.0%
!!! CAGGAAAGTTTTTTTTAAGT+AGG - chr1_1:54576254-54576273 Msa0029280:intron 25.0%
! TAGTAATACTTTCAACTTGT+TGG + chr1_1:54576895-54576914 None:intergenic 25.0%
! TTCCATTGTTGTAGATAAAA+AGG - chr1_1:54577084-54577103 Msa0029280:intron 25.0%
!! TACCTTTTTATCTACAACAA+TGG + chr1_1:54577089-54577108 None:intergenic 25.0%
!! CTAAGTCTCTTTTCATAATT+CGG + chr1_1:54577187-54577206 None:intergenic 25.0%
!! TATTGACTACATGGATTTAA+CGG + chr1_1:54577260-54577279 None:intergenic 25.0%
! GTAATTAAGAACCTCATAAA+TGG + chr1_1:54577376-54577395 None:intergenic 25.0%
!! ATGAGAAGTGCAATAAAATT+TGG + chr1_1:54577431-54577450 None:intergenic 25.0%
! TATTATTACCATTACTTGAG+AGG - chr1_1:54577750-54577769 Msa0029280:intron 25.0%
!! TTTTATATAACCAACTGTTG+GGG + chr1_1:54577958-54577977 None:intergenic 25.0%
! ATCACATGATTAATGCATAT+TGG + chr1_1:54578084-54578103 None:intergenic 25.0%
!!! ATGTATTGATGCCTTTTTTT+TGG - chr1_1:54578483-54578502 Msa0029280:CDS 25.0%
! AACACTATTCACCAAAAAAA+AGG + chr1_1:54578497-54578516 None:intergenic 25.0%
! GAGGAATAGAAAATTGTTAT+CGG + chr1_1:54578549-54578568 None:intergenic 25.0%
! TATTAAATTCGGTCATTAGT+TGG - chr1_1:54578709-54578728 Msa0029280:intron 25.0%
!! TAGTGATTGAAAGTATATAG+AGG + chr1_1:54578961-54578980 None:intergenic 25.0%
!! ATTATTTAATTTCTGCAGCA+TGG - chr1_1:54579158-54579177 Msa0029280:intron 25.0%
! CAATGCAATCTATTTCAAAA+TGG + chr1_1:54579251-54579270 None:intergenic 25.0%
! AATAGATTGCATTGCAAAAT+TGG - chr1_1:54579257-54579276 Msa0029280:intron 25.0%
! ATAGATTGCATTGCAAAATT+GGG - chr1_1:54579258-54579277 Msa0029280:intron 25.0%
! GAAAAAAAATAAGGTATGAC+TGG + chr1_1:54579325-54579344 None:intergenic 25.0%
! TCTAACAGATACTATCAATT+AGG - chr1_1:54579383-54579402 Msa0029280:intron 25.0%
! CCGTTTATACTTTGTATATT+TGG - chr1_1:54579952-54579971 Msa0029280:intron 25.0%
! CATTTCTTAATAAACTGTCA+TGG - chr1_1:54580033-54580052 Msa0029280:intron 25.0%
! TTAATAAACTGTCATGGATT+TGG - chr1_1:54580039-54580058 Msa0029280:intron 25.0%
! CTCTCATTTCATAGTTATTT+AGG - chr1_1:54580098-54580117 Msa0029280:intron 25.0%
!!! TAAGTGAAACTACTAGTTTT+AGG - chr1_1:54580132-54580151 Msa0029280:intron 25.0%
! TTACCATACAATTGACAAAT+TGG + chr1_1:54580383-54580402 None:intergenic 25.0%
AAAAGAAACAAGATAGTGAG+TGG - chr1_1:54573801-54573820 Msa0029280:three_prime_UTR 30.0%
TAATCAGAATGATGAAGAAG+GGG + chr1_1:54573953-54573972 None:intergenic 30.0%
TGAAAACCTTGATTCTACTA+CGG + chr1_1:54574032-54574051 None:intergenic 30.0%
! TACTAAATTTTCAATTGGGG+TGG - chr1_1:54574081-54574100 Msa0029280:intron 30.0%
TCATGTTTGTATCAGACTTT+CGG - chr1_1:54574435-54574454 Msa0029280:intron 30.0%
!! TTAGAAGTTTGTTATGCCAT+CGG - chr1_1:54574574-54574593 Msa0029280:intron 30.0%
TGAGTATCTCTATTTCATGT+GGG - chr1_1:54574706-54574725 Msa0029280:intron 30.0%
TCGATAAGTGAAATGAATGT+AGG + chr1_1:54574733-54574752 None:intergenic 30.0%
TAATCTACACAATCCATGAA+AGG + chr1_1:54574915-54574934 None:intergenic 30.0%
CACTACTAGTATATAGTACT+AGG + chr1_1:54575053-54575072 None:intergenic 30.0%
CTAGTACTATATACTAGTAG+TGG - chr1_1:54575051-54575070 Msa0029280:intron 30.0%
!!! ATTCTTTTTTGTCCCTTGAA+GGG - chr1_1:54575133-54575152 Msa0029280:intron 30.0%
AATTCTTGTCGATATATGCT+CGG + chr1_1:54575209-54575228 None:intergenic 30.0%
!! AGAATTTTAATGGACAGAGT+TGG - chr1_1:54575223-54575242 Msa0029280:intron 30.0%
ATCATTTATGATTGCCTTCT+AGG - chr1_1:54575398-54575417 Msa0029280:CDS 30.0%
TCATTTATGATTGCCTTCTA+GGG - chr1_1:54575399-54575418 Msa0029280:CDS 30.0%
TAGAGAGAACTTATGTTTGA+TGG - chr1_1:54575527-54575546 Msa0029280:intron 30.0%
!! ACAAATTGCTTTGGATTAGT+TGG - chr1_1:54575646-54575665 Msa0029280:intron 30.0%
TATGCATGATAACATCTTCA+TGG - chr1_1:54575772-54575791 Msa0029280:intron 30.0%
ATGCATGATAACATCTTCAT+GGG - chr1_1:54575773-54575792 Msa0029280:intron 30.0%
TCCACAGAATAAAAATGGAA+TGG - chr1_1:54575878-54575897 Msa0029280:intron 30.0%
!! ACCATTCCATTTTTATTCTG+TGG + chr1_1:54575882-54575901 None:intergenic 30.0%
TCACATAGATCAGATATATG+TGG + chr1_1:54576030-54576049 None:intergenic 30.0%
CTTTAAGTATCAAAATGGAG+TGG - chr1_1:54576146-54576165 Msa0029280:intron 30.0%
!! TTGTAAACTTTTGACTGCAT+AGG + chr1_1:54576289-54576308 None:intergenic 30.0%
ATGCAACTTTACAGTTCTTA+AGG + chr1_1:54576966-54576985 None:intergenic 30.0%
! CTGAGATGAGAATTTTATGT+TGG - chr1_1:54577000-54577019 Msa0029280:intron 30.0%
! ATGAGAATTTTATGTTGGAC+AGG - chr1_1:54577005-54577024 Msa0029280:intron 30.0%
ACAGGTAGTCATACTAAAAT+AGG - chr1_1:54577023-54577042 Msa0029280:intron 30.0%
GAGAAATAGTTAGAGGAAAA+GGG - chr1_1:54577141-54577160 Msa0029280:intron 30.0%
GTAACAAAGCATATTCTCTA+AGG + chr1_1:54577622-54577641 None:intergenic 30.0%
AAGATGAATCAATGCATTTC+AGG - chr1_1:54577865-54577884 Msa0029280:intron 30.0%
!!! ACTTGCTATAATCCTCATTT+TGG - chr1_1:54578147-54578166 Msa0029280:CDS 30.0%
CTCTTTACTATACCAAAATG+AGG + chr1_1:54578162-54578181 None:intergenic 30.0%
TTAACTGGTCAAACTTCATA+TGG + chr1_1:54578202-54578221 None:intergenic 30.0%
AATAAATAAGACAGCTGCAA+GGG + chr1_1:54578417-54578436 None:intergenic 30.0%
AAATAAATAAGACAGCTGCA+AGG + chr1_1:54578418-54578437 None:intergenic 30.0%
!! AATAGTGTTTTTCGATGTCT+AGG - chr1_1:54578508-54578527 Msa0029280:intron 30.0%
!! ATAGTGTTTTTCGATGTCTA+GGG - chr1_1:54578509-54578528 Msa0029280:intron 30.0%
! TTTTTGCAACTATCATTCAG+AGG + chr1_1:54578568-54578587 None:intergenic 30.0%
TTAGTTGGATTGATGCTTAA+TGG - chr1_1:54578598-54578617 Msa0029280:intron 30.0%
TAAATCACCTATTATCTCTG+AGG + chr1_1:54578924-54578943 None:intergenic 30.0%
! CATCCATTGCATATCAATTT+TGG - chr1_1:54579084-54579103 Msa0029280:intron 30.0%
AAAAAATAAGGTATGACTGG+AGG + chr1_1:54579322-54579341 None:intergenic 30.0%
ACAGATACTATCAATTAGGT+TGG - chr1_1:54579387-54579406 Msa0029280:intron 30.0%
TGTATATTTGTGATAGTCGT+GGG - chr1_1:54579425-54579444 Msa0029280:intron 30.0%
! TGTTTTCTTCATGTACTAGT+TGG - chr1_1:54579617-54579636 Msa0029280:CDS 30.0%
TTGGGTAGATAATAGATATG+TGG - chr1_1:54579740-54579759 Msa0029280:intron 30.0%
TGGGTAGATAATAGATATGT+GGG - chr1_1:54579741-54579760 Msa0029280:intron 30.0%
ATTGTGATTATGGGGAAAAT+AGG - chr1_1:54580267-54580286 Msa0029280:intron 30.0%
TTGTGATTATGGGGAAAATA+GGG - chr1_1:54580268-54580287 Msa0029280:intron 30.0%
ACAATTGACAAATTGGAACT+CGG + chr1_1:54580376-54580395 None:intergenic 30.0%
GTTCCAATTTGTCAATTGTA+TGG - chr1_1:54580377-54580396 Msa0029280:intron 30.0%
TAAATATCTTGAGCCTAATC+AGG - chr1_1:54580414-54580433 Msa0029280:intron 30.0%
! ATTTACCCTTTTCCAAATGT+TGG + chr1_1:54580520-54580539 None:intergenic 30.0%
! GGAAAAGGGTAAATTACTTT+TGG - chr1_1:54580526-54580545 Msa0029280:intron 30.0%
!! AGGGTAAATTACTTTTGGTT+TGG - chr1_1:54580531-54580550 Msa0029280:intron 30.0%
TTATTATTACACGAAGAAGC+AGG + chr1_1:54580873-54580892 None:intergenic 30.0%
! TAGTTTTCATATGTATCCAG+AGG + chr1_1:54581020-54581039 None:intergenic 30.0%
! TCCTAGTTAGTTCAATTTTC+GGG + chr1_1:54581065-54581084 None:intergenic 30.0%
! GTCCTAGTTAGTTCAATTTT+CGG + chr1_1:54581066-54581085 None:intergenic 30.0%
! GTTTTTCCGTAGTAGAATCA+AGG - chr1_1:54574023-54574042 Msa0029280:CDS 35.0%
! CATTTTCACTCACACATAAG+AGG - chr1_1:54574050-54574069 Msa0029280:intron 35.0%
!! ACGTTTGTTTTCCTCAAAGT+TGG - chr1_1:54574119-54574138 Msa0029280:intron 35.0%
ATGCTTCTTTACTGTTTGTG+CGG - chr1_1:54574191-54574210 Msa0029280:CDS 35.0%
TCTGATACAAACATGAACAC+CGG + chr1_1:54574431-54574450 None:intergenic 35.0%
TGATTAAGTAACTAGACCGA+TGG + chr1_1:54574593-54574612 None:intergenic 35.0%
! CAGTTATGTCTCTCATTTTG+AGG - chr1_1:54574618-54574637 Msa0029280:intron 35.0%
GTGAGTATCTCTATTTCATG+TGG - chr1_1:54574705-54574724 Msa0029280:intron 35.0%
TACTTCTCCCATTGTAGATA+AGG - chr1_1:54574788-54574807 Msa0029280:intron 35.0%
TGAATTACAAAGATAGGCAC+TGG + chr1_1:54574815-54574834 None:intergenic 35.0%
! ACTCTTGCATTTTCCTTTCA+TGG - chr1_1:54574899-54574918 Msa0029280:intron 35.0%
! CATGGATTGTGTAGATTAAG+AGG - chr1_1:54574917-54574936 Msa0029280:intron 35.0%
ACTATATACTAGTAGTGGCT+TGG - chr1_1:54575056-54575075 Msa0029280:intron 35.0%
!!! GATTCTTTTTTGTCCCTTGA+AGG - chr1_1:54575132-54575151 Msa0029280:intron 35.0%
!!! TTCTTTTTTGTCCCTTGAAG+GGG - chr1_1:54575134-54575153 Msa0029280:intron 35.0%
! TTAATGGACAGAGTTGGTTT+AGG - chr1_1:54575229-54575248 Msa0029280:intron 35.0%
AAGTCATACATGTCTCTTCA+CGG + chr1_1:54575293-54575312 None:intergenic 35.0%
TTGCTTGATGAGGAGTAAAA+TGG - chr1_1:54575471-54575490 Msa0029280:intron 35.0%
!! ATATCAGATAGTTCTGGTTC+TGG + chr1_1:54575589-54575608 None:intergenic 35.0%
AGCTCTCCACAGAATAAAAA+TGG - chr1_1:54575873-54575892 Msa0029280:intron 35.0%
AATGGTTGAAAGCTTGACTT+TGG - chr1_1:54575896-54575915 Msa0029280:intron 35.0%
ATGGTTGAAAGCTTGACTTT+GGG - chr1_1:54575897-54575916 Msa0029280:intron 35.0%
TGGAGTCTCGACATAATAAT+GGG - chr1_1:54575938-54575957 Msa0029280:CDS 35.0%
TAGATCAGATATATGTGGTG+TGG + chr1_1:54576025-54576044 None:intergenic 35.0%
AAATTGCCAACTTATTCACC+AGG - chr1_1:54576202-54576221 Msa0029280:intron 35.0%
ATTTAGCCTGGTGAATAAGT+TGG + chr1_1:54576211-54576230 None:intergenic 35.0%
CTGAATCATAAAGTTCCATC+TGG + chr1_1:54576237-54576256 None:intergenic 35.0%
CAGATGGAACTTTATGATTC+AGG - chr1_1:54576235-54576254 Msa0029280:intron 35.0%
!! GGCTCTAAAAATCTAGTGAA+GGG + chr1_1:54576387-54576406 None:intergenic 35.0%
!! AGGCTCTAAAAATCTAGTGA+AGG + chr1_1:54576388-54576407 None:intergenic 35.0%
TGAGAAGTTCAGAAGTTTGA+GGG - chr1_1:54576407-54576426 Msa0029280:intron 35.0%
! AAATTTTGTTGAAGGCAGTC+TGG - chr1_1:54576519-54576538 Msa0029280:intron 35.0%
TGAAATGACAACAAGTCCAT+CGG + chr1_1:54576610-54576629 None:intergenic 35.0%
TTCTGTGCTCATATCATCAA+TGG + chr1_1:54576691-54576710 None:intergenic 35.0%
TGATATGAGCACAGAAAAGT+TGG - chr1_1:54576695-54576714 Msa0029280:intron 35.0%
GATATGAGCACAGAAAAGTT+GGG - chr1_1:54576696-54576715 Msa0029280:intron 35.0%
!! TATTGATTCGAAAGCACAAG+TGG + chr1_1:54576773-54576792 None:intergenic 35.0%
ACTGTAAAGTTGCATACAAC+TGG - chr1_1:54576971-54576990 Msa0029280:intron 35.0%
ATACGTGGAGAAATAGTTAG+AGG - chr1_1:54577134-54577153 Msa0029280:intron 35.0%
GGAGAAATAGTTAGAGGAAA+AGG - chr1_1:54577140-54577159 Msa0029280:intron 35.0%
! ATTCGGCCTATAGTTTTCTA+TGG + chr1_1:54577170-54577189 None:intergenic 35.0%
GGCACAATAATACTTTGTCT+TGG + chr1_1:54577239-54577258 None:intergenic 35.0%
AATGGCTCATACTAGAGTAA+CGG + chr1_1:54577358-54577377 None:intergenic 35.0%
TCTAGTATGAGCCATTTATG+AGG - chr1_1:54577362-54577381 Msa0029280:intron 35.0%
! GTAATTTCCTTTAGAAGGTC+AGG + chr1_1:54577483-54577502 None:intergenic 35.0%
CCTCTGTAATTTCCTTTAGA+AGG + chr1_1:54577488-54577507 None:intergenic 35.0%
! CCTTCTAAAGGAAATTACAG+AGG - chr1_1:54577485-54577504 Msa0029280:intron 35.0%
! GAGAATATGCTTTGTTACCT+AGG - chr1_1:54577624-54577643 Msa0029280:intron 35.0%
GACTAAATCAGCAGAGTTAA+CGG + chr1_1:54577725-54577744 None:intergenic 35.0%
TAATTAGGCCTCTCAAGTAA+TGG + chr1_1:54577761-54577780 None:intergenic 35.0%
! ACAACTTACGAGATGCATTT+TGG + chr1_1:54577995-54578014 None:intergenic 35.0%
ATCTCGTAAGTTGTGATTGA+TGG - chr1_1:54578001-54578020 Msa0029280:intron 35.0%
TCTCGTAAGTTGTGATTGAT+GGG - chr1_1:54578002-54578021 Msa0029280:intron 35.0%
AGCAAGTAAGAATTATGGCT+TGG + chr1_1:54578134-54578153 None:intergenic 35.0%
TCAAACTTCATATGGTCATC+GGG + chr1_1:54578194-54578213 None:intergenic 35.0%
GTCAAACTTCATATGGTCAT+CGG + chr1_1:54578195-54578214 None:intergenic 35.0%
ATACTTAGTGTGGATGTATC+TGG + chr1_1:54578301-54578320 None:intergenic 35.0%
AAAGAGAAACAATCCCAACA+AGG + chr1_1:54578350-54578369 None:intergenic 35.0%
GATTGATGCTTAATGGAGAT+GGG - chr1_1:54578605-54578624 Msa0029280:intron 35.0%
CTTAATGGAGATGGGAATTT+GGG - chr1_1:54578613-54578632 Msa0029280:intron 35.0%
ATACTTCTTTATGAACCTCG+TGG - chr1_1:54578686-54578705 Msa0029280:intron 35.0%
GAACCTCGTGGTATTAAATT+CGG - chr1_1:54578698-54578717 Msa0029280:intron 35.0%
AAGAAGCAATCAATACGTTC+AGG - chr1_1:54578869-54578888 Msa0029280:intron 35.0%
! TTTTGGACCTCAGAGATAAT+AGG - chr1_1:54578914-54578933 Msa0029280:intron 35.0%
! GAAGCTTATATTTGTTGCAG+TGG - chr1_1:54578988-54579007 Msa0029280:intron 35.0%
AGACATATCTTACCAAAGCT+TGG + chr1_1:54579043-54579062 None:intergenic 35.0%
CAGCCAAAATTGATATGCAA+TGG + chr1_1:54579090-54579109 None:intergenic 35.0%
!! CATTGCATATCAATTTTGGC+TGG - chr1_1:54579088-54579107 Msa0029280:intron 35.0%
! ACCAGTATTCTCACCTTTTA+TGG - chr1_1:54579187-54579206 Msa0029280:intron 35.0%
TCCATAAAAGGTGAGAATAC+TGG + chr1_1:54579191-54579210 None:intergenic 35.0%
TAGCACTTGTGATCCATAAA+AGG + chr1_1:54579203-54579222 None:intergenic 35.0%
!! AAAAGGTGTTTCTGACTGTA+TGG + chr1_1:54579227-54579246 None:intergenic 35.0%
TATCTGTTAGAACTTGAAGC+TGG + chr1_1:54579374-54579393 None:intergenic 35.0%
!! CTATCAATTAGGTTGGACAA+AGG - chr1_1:54579394-54579413 Msa0029280:intron 35.0%
GTGTATATTTGTGATAGTCG+TGG - chr1_1:54579424-54579443 Msa0029280:intron 35.0%
GTATATTTGTGATAGTCGTG+GGG - chr1_1:54579426-54579445 Msa0029280:intron 35.0%
!! ATTGGTGTCATATATCGTGT+CGG - chr1_1:54579548-54579567 Msa0029280:intron 35.0%
! CTAGTTGGTTTCGCAAAAAT+AGG - chr1_1:54579632-54579651 Msa0029280:CDS 35.0%
TTCGCAAAAATAGGATTTGC+AGG - chr1_1:54579641-54579660 Msa0029280:CDS 35.0%
CATTGAGGGATACTTGTATT+GGG - chr1_1:54579673-54579692 Msa0029280:CDS 35.0%
AGAATCGCAAACTCTGTATT+GGG - chr1_1:54579722-54579741 Msa0029280:intron 35.0%
GGGTAGATAATAGATATGTG+GGG - chr1_1:54579742-54579761 Msa0029280:intron 35.0%
TAGTAAGCAGTTATTGGGTA+AGG - chr1_1:54579766-54579785 Msa0029280:intron 35.0%
AGTAAGCAGTTATTGGGTAA+GGG - chr1_1:54579767-54579786 Msa0029280:intron 35.0%
TAGTAAGCAGTTATTGGGTA+AGG - chr1_1:54579766-54579785 Msa0029280:intron 35.0%
AGTAAGCAGTTATTGGGTAA+GGG - chr1_1:54579767-54579786 Msa0029280:intron 35.0%
TTGCAACATCTCAACTATTG+AGG + chr1_1:54580072-54580091 None:intergenic 35.0%
AGTAGTTTCACTTACATCAC+AGG + chr1_1:54580126-54580145 None:intergenic 35.0%
! CTTGTTATCTTTCAATGCAC+CGG + chr1_1:54580476-54580495 None:intergenic 35.0%
GTGCATTGAAAGATAACAAG+CGG - chr1_1:54580476-54580495 Msa0029280:intron 35.0%
TGCATTGAAAGATAACAAGC+GGG - chr1_1:54580477-54580496 Msa0029280:intron 35.0%
CAAGATGTGTAGCTCATATT+AGG + chr1_1:54580591-54580610 None:intergenic 35.0%
! CCAAATGCAAGGTGTTAAAA+GGG + chr1_1:54580766-54580785 None:intergenic 35.0%
! TCCAAATGCAAGGTGTTAAA+AGG + chr1_1:54580767-54580786 None:intergenic 35.0%
! TTAGGAAATGATGTTGGTAG+AGG + chr1_1:54580816-54580835 None:intergenic 35.0%
TCTACCAACATCATTTCCTA+AGG - chr1_1:54580815-54580834 Msa0029280:CDS 35.0%
TCATCCTTAGGAAATGATGT+TGG + chr1_1:54580822-54580841 None:intergenic 35.0%
CAAAATGCATCTTCATCCTT+AGG + chr1_1:54580834-54580853 None:intergenic 35.0%
TCCCGAAAATTGAACTAACT+AGG - chr1_1:54581061-54581080 Msa0029280:five_prime_UTR 35.0%
TTCTGGCAGGTTTATTTGTT+TGG + chr1_1:54581097-54581116 None:intergenic 35.0%
AACAAATAAACCTGCCAGAA+TGG - chr1_1:54581097-54581116 Msa0029280:five_prime_UTR 35.0%
ACAAATAAACCTGCCAGAAT+GGG - chr1_1:54581098-54581117 Msa0029280:five_prime_UTR 35.0%
ACAAGATAGTGAGTGGTTTG+AGG - chr1_1:54573808-54573827 Msa0029280:three_prime_UTR 40.0%
AGATTGTTGGGTAACGAAGA+GGG + chr1_1:54573903-54573922 None:intergenic 40.0%
CCTGAAAAACGGAGATTGTT+GGG + chr1_1:54573915-54573934 None:intergenic 40.0%
ACCTGAAAAACGGAGATTGT+TGG + chr1_1:54573916-54573935 None:intergenic 40.0%
TGAGAAGGGAACCTGAAAAA+CGG + chr1_1:54573926-54573945 None:intergenic 40.0%
GAAGAAGGGGAAATTGAGAA+GGG + chr1_1:54573940-54573959 None:intergenic 40.0%
TGAAGAAGGGGAAATTGAGA+AGG + chr1_1:54573941-54573960 None:intergenic 40.0%
TTATGCTGCAGGTTTCAAAC+TGG - chr1_1:54573996-54574015 Msa0029280:CDS 40.0%
TTCTTTACTGTTTGTGCGGT+TGG - chr1_1:54574195-54574214 Msa0029280:CDS 40.0%
! TGGAGTTATGTTGGTTGTGT+CGG - chr1_1:54574222-54574241 Msa0029280:CDS 40.0%
! GGAATTTGGGTTAGATTACG+TGG - chr1_1:54574320-54574339 Msa0029280:intron 40.0%
GTCTGTGTAAGTGTTATGTC+CGG - chr1_1:54574409-54574428 Msa0029280:intron 40.0%
CACTGGACCTTATCTACAAT+GGG + chr1_1:54574798-54574817 None:intergenic 40.0%
!! GTTGAGGTTGTTGACTTTAG+AGG - chr1_1:54575016-54575035 Msa0029280:intron 40.0%
TGTTTCATGCTTGCTTGATG+AGG - chr1_1:54575461-54575480 Msa0029280:intron 40.0%
! GTTGGTTTCAGATAGAAGTG+TGG - chr1_1:54575664-54575683 Msa0029280:intron 40.0%
AGAGTCAAGAGGACAGAAAA+AGG + chr1_1:54575749-54575768 None:intergenic 40.0%
! TTTTCTGTCCTCTTGACTCT+TGG - chr1_1:54575749-54575768 Msa0029280:intron 40.0%
CATGATAACATCTTCATGGG+TGG - chr1_1:54575776-54575795 Msa0029280:intron 40.0%
!!! ATGGGTGGTGGTTTTAAACA+TGG - chr1_1:54575791-54575810 Msa0029280:intron 40.0%
CTGGAGTCTCGACATAATAA+TGG - chr1_1:54575937-54575956 Msa0029280:CDS 40.0%
ATAAATCAGCGAGAATGACC+TGG - chr1_1:54576070-54576089 Msa0029280:intron 40.0%
TAAATCAGCGAGAATGACCT+GGG - chr1_1:54576071-54576090 Msa0029280:intron 40.0%
AATCATTCTTCAATCTGCCC+AGG + chr1_1:54576091-54576110 None:intergenic 40.0%
GCTGCATTTGTTCTCAGATA+TGG - chr1_1:54576329-54576348 Msa0029280:intron 40.0%
AAGAAAGATGCTTGCCACAT+TGG - chr1_1:54576356-54576375 Msa0029280:intron 40.0%
CTCAAACTTCTGAACTTCTC+AGG + chr1_1:54576408-54576427 None:intergenic 40.0%
CTGAGAAGTTCAGAAGTTTG+AGG - chr1_1:54576406-54576425 Msa0029280:intron 40.0%
CCAATATGCATTACACAGTC+AGG + chr1_1:54576483-54576502 None:intergenic 40.0%
CCTGACTGTGTAATGCATAT+TGG - chr1_1:54576480-54576499 Msa0029280:intron 40.0%
AAAACACCAGCTCTATATGC+AGG + chr1_1:54576648-54576667 None:intergenic 40.0%
! TATAGAGCTGGTGTTTTGTC+TGG - chr1_1:54576651-54576670 Msa0029280:intron 40.0%
TTTGTCTGGAGATGTTATCC+TGG - chr1_1:54576665-54576684 Msa0029280:intron 40.0%
GATGAAGAAAAACCCACTGT+AGG + chr1_1:54576743-54576762 None:intergenic 40.0%
! TCAGTTGGTTCAAACATACG+TGG - chr1_1:54577119-54577138 Msa0029280:intron 40.0%
GGGAGACCATAGAAAACTAT+AGG - chr1_1:54577161-54577180 Msa0029280:intron 40.0%
! TATCAAAGTGTTCTTCCACC+AGG + chr1_1:54577286-54577305 None:intergenic 40.0%
TTGATTGCCTGACCTTCTAA+AGG - chr1_1:54577473-54577492 Msa0029280:intron 40.0%
TACCAACTTACGTTAGAGCT+AGG + chr1_1:54577565-54577584 None:intergenic 40.0%
! GCAAGTTTTTGCATCATCCT+AGG + chr1_1:54577644-54577663 None:intergenic 40.0%
TAAATCAGCAGAGTTAACGG+TGG + chr1_1:54577722-54577741 None:intergenic 40.0%
GGAAATAATTCCCCAACAGT+TGG - chr1_1:54577945-54577964 Msa0029280:intron 40.0%
GAAGCAAGAAAAGTTCTGCT+TGG + chr1_1:54578028-54578047 None:intergenic 40.0%
! GAATTATGGCTTGGAGTACT+AGG + chr1_1:54578125-54578144 None:intergenic 40.0%
!! TTTTTCGATGTCTAGGGTTG+TGG - chr1_1:54578515-54578534 Msa0029280:intron 40.0%
GGATTGATGCTTAATGGAGA+TGG - chr1_1:54578604-54578623 Msa0029280:intron 40.0%
GCTTAATGGAGATGGGAATT+TGG - chr1_1:54578612-54578631 Msa0029280:intron 40.0%
TGACCGAATTTAATACCACG+AGG + chr1_1:54578704-54578723 None:intergenic 40.0%
! GCTTATATTTGTTGCAGTGG+TGG - chr1_1:54578991-54579010 Msa0029280:intron 40.0%
TGGCAATCTCAATTCCTTCT+GGG + chr1_1:54579023-54579042 None:intergenic 40.0%
TTGGCAATCTCAATTCCTTC+TGG + chr1_1:54579024-54579043 None:intergenic 40.0%
GAATTGAGATTGCCAAGCTT+TGG - chr1_1:54579028-54579047 Msa0029280:intron 40.0%
!!! TGCATATCAATTTTGGCTGG+TGG - chr1_1:54579091-54579110 Msa0029280:intron 40.0%
!!! GCATATCAATTTTGGCTGGT+GGG - chr1_1:54579092-54579111 Msa0029280:intron 40.0%
AAAAGGTGAGAATACTGGTG+TGG + chr1_1:54579186-54579205 None:intergenic 40.0%
! TGACTGGAGGAGTTCATTTT+TGG + chr1_1:54579309-54579328 None:intergenic 40.0%
CGAGATATACTGGATACAGA+TGG - chr1_1:54579451-54579470 Msa0029280:intron 40.0%
TATGACACCAATGCAATGAG+AGG + chr1_1:54579540-54579559 None:intergenic 40.0%
!! TTGGTGTCATATATCGTGTC+GGG - chr1_1:54579549-54579568 Msa0029280:intron 40.0%
GCATTGAGGGATACTTGTAT+TGG - chr1_1:54579672-54579691 Msa0029280:CDS 40.0%
AGGGATACTTGTATTGGGTT+TGG - chr1_1:54579678-54579697 Msa0029280:CDS 40.0%
GGGATACTTGTATTGGGTTT+GGG - chr1_1:54579679-54579698 Msa0029280:CDS 40.0%
GAGAATCGCAAACTCTGTAT+TGG - chr1_1:54579721-54579740 Msa0029280:intron 40.0%
TGGGGATAGTAAGCAGTTAT+TGG - chr1_1:54579760-54579779 Msa0029280:intron 40.0%
GGGGATAGTAAGCAGTTATT+GGG - chr1_1:54579761-54579780 Msa0029280:intron 40.0%
GTAAGCAGTTATTGGGTAAG+GGG - chr1_1:54579768-54579787 Msa0029280:intron 40.0%
!! AAGAGTTCTATTGACTCCTG+TGG - chr1_1:54579796-54579815 Msa0029280:intron 40.0%
!! AGAGTTCTATTGACTCCTGT+GGG - chr1_1:54579797-54579816 Msa0029280:intron 40.0%
TGGGGATAGTAAGCAGTTAT+TGG - chr1_1:54579760-54579779 Msa0029280:intron 40.0%
GGGGATAGTAAGCAGTTATT+GGG - chr1_1:54579761-54579780 Msa0029280:intron 40.0%
GTAAGCAGTTATTGGGTAAG+GGG - chr1_1:54579768-54579787 Msa0029280:intron 40.0%
TGTTTACCAGACACACCTTT+CGG - chr1_1:54580223-54580242 Msa0029280:intron 40.0%
TTGACAAATTGGAACTCGGA+AGG + chr1_1:54580372-54580391 None:intergenic 40.0%
TGAGCCTAATCAGGTAAACA+AGG - chr1_1:54580423-54580442 Msa0029280:intron 40.0%
GAGCCTAATCAGGTAAACAA+GGG - chr1_1:54580424-54580443 Msa0029280:intron 40.0%
! GTTCCCTTGTTTACCTGATT+AGG + chr1_1:54580430-54580449 None:intergenic 40.0%
GAGAGCCAACATTTGGAAAA+GGG - chr1_1:54580512-54580531 Msa0029280:intron 40.0%
ATATGAGCTACACATCTTGC+AGG - chr1_1:54580592-54580611 Msa0029280:intron 40.0%
CTGAGAGCTCAAATACTGAT+TGG + chr1_1:54580623-54580642 None:intergenic 40.0%
TCAGTATTTGAGCTCTCAGA+TGG - chr1_1:54580624-54580643 Msa0029280:CDS 40.0%
! CCCTTTTAACACCTTGCATT+TGG - chr1_1:54580763-54580782 Msa0029280:CDS 40.0%
AACACCTTGCATTTGGATGT+AGG - chr1_1:54580770-54580789 Msa0029280:CDS 40.0%
! GAAATGATGTTGGTAGAGGA+TGG + chr1_1:54580812-54580831 None:intergenic 40.0%
CATATGTATCCAGAGGTTTG+TGG + chr1_1:54581013-54581032 None:intergenic 40.0%
!! AGTTCAATTTTCGGGAACAC+AGG + chr1_1:54581057-54581076 None:intergenic 40.0%
TGATCTCCATGGAAGAGTGA+AGG + chr1_1:54573852-54573871 None:intergenic 45.0%
AGAGCTAGCAATGATCTCCA+TGG + chr1_1:54573863-54573882 None:intergenic 45.0%
GAGATTGTTGGGTAACGAAG+AGG + chr1_1:54573904-54573923 None:intergenic 45.0%
!! CCCAACAATCTCCGTTTTTC+AGG - chr1_1:54573912-54573931 Msa0029280:three_prime_UTR 45.0%
CGAAGGAAACTCCAACTTTG+AGG + chr1_1:54574133-54574152 None:intergenic 45.0%
CAGAAGGAGGAAATGGAACA+AGG - chr1_1:54574153-54574172 Msa0029280:CDS 45.0%
GTTGGTTGCTGGAGTTATGT+TGG - chr1_1:54574213-54574232 Msa0029280:CDS 45.0%
! GCACTGACACTTCAAATCGA+AGG - chr1_1:54574342-54574361 Msa0029280:CDS 45.0%
GTGAGTGTCAAGGTGAATGT+TGG + chr1_1:54574663-54574682 None:intergenic 45.0%
TTGACACTCACTCACTCGAT+GGG - chr1_1:54574672-54574691 Msa0029280:intron 45.0%
CAATGGGAGAAGTAGTGCTA+GGG + chr1_1:54574782-54574801 None:intergenic 45.0%
ACAATGGGAGAAGTAGTGCT+AGG + chr1_1:54574783-54574802 None:intergenic 45.0%
GCACTGGACCTTATCTACAA+TGG + chr1_1:54574799-54574818 None:intergenic 45.0%
GGAAGAGAATCTCCTCTTTC+TGG - chr1_1:54575164-54575183 Msa0029280:intron 45.0%
AGAGAATCTCCTCTTTCTGG+AGG - chr1_1:54575167-54575186 Msa0029280:intron 45.0%
GTCTCTTCACGGTTGTTCAT+GGG + chr1_1:54575282-54575301 None:intergenic 45.0%
TGTCTCTTCACGGTTGTTCA+TGG + chr1_1:54575283-54575302 None:intergenic 45.0%
! TGATTGCCTTCTAGGGATTG+AGG - chr1_1:54575406-54575425 Msa0029280:CDS 45.0%
CATGCATACCAAGAGTCAAG+AGG + chr1_1:54575760-54575779 None:intergenic 45.0%
GATAACATCTTCATGGGTGG+TGG - chr1_1:54575779-54575798 Msa0029280:intron 45.0%
!! GCTTGACTTTGGGTTGTCAT+CGG - chr1_1:54575907-54575926 Msa0029280:intron 45.0%
ACCAGGCTAAATTGTCCAGA+TGG - chr1_1:54576219-54576238 Msa0029280:intron 45.0%
TCCATCTGGACAATTTAGCC+TGG + chr1_1:54576223-54576242 None:intergenic 45.0%
AGTGAAGGGATCATCCAATG+TGG + chr1_1:54576373-54576392 None:intergenic 45.0%
! TGAAGGCAGTCTGGAACTAA+AGG - chr1_1:54576528-54576547 Msa0029280:intron 45.0%
ACTGGAGTGGGGATATCAAT+AGG - chr1_1:54576558-54576577 Msa0029280:intron 45.0%
ATGGCATGTCTGCTTTGGTA+GGG + chr1_1:54576587-54576606 None:intergenic 45.0%
ATGACAACAAGTCCATCGGA+TGG + chr1_1:54576606-54576625 None:intergenic 45.0%
! GTTGTCATTTCAGCTTCTCC+AGG - chr1_1:54576618-54576637 Msa0029280:intron 45.0%
TGCTCATATCATCAATGGCC+AGG + chr1_1:54576686-54576705 None:intergenic 45.0%
GGAAATTACAGAGGACCTGA+TGG - chr1_1:54577494-54577513 Msa0029280:intron 45.0%
AATGCAACAGAGCTTCCATC+AGG + chr1_1:54577512-54577531 None:intergenic 45.0%
! GTTGCATTGACCATACGTAG+TGG - chr1_1:54577524-54577543 Msa0029280:intron 45.0%
TACGTCAGAACCACTACGTA+TGG + chr1_1:54577537-54577556 None:intergenic 45.0%
!! CACCTAGCTCTAACGTAAGT+TGG - chr1_1:54577560-54577579 Msa0029280:intron 45.0%
TTGCACAGTCTTGACTTCAC+TGG + chr1_1:54577912-54577931 None:intergenic 45.0%
GAAACAATCCCAACAAGGCA+GGG + chr1_1:54578345-54578364 None:intergenic 45.0%
AGAAACAATCCCAACAAGGC+AGG + chr1_1:54578346-54578365 None:intergenic 45.0%
CCTGCAAGGATGACAGATTA+CGG + chr1_1:54578841-54578860 None:intergenic 45.0%
! CTTCTTTGATAGCACCTGCA+AGG + chr1_1:54578855-54578874 None:intergenic 45.0%
CAGAGGTTCAGAAGTTGCTA+GGG + chr1_1:54579485-54579504 None:intergenic 45.0%
AAAATTACCAGCACAGCCAG+AGG + chr1_1:54579502-54579521 None:intergenic 45.0%
GCTTTCTCCTCTCATTGCAT+TGG - chr1_1:54579530-54579549 Msa0029280:intron 45.0%
!! GAGTTCTATTGACTCCTGTG+GGG - chr1_1:54579798-54579817 Msa0029280:intron 45.0%
TAACTGCTTACTATCCCCAC+AGG + chr1_1:54579759-54579778 None:intergenic 45.0%
AGTGCCAGCGAAATATTAGC+CGG - chr1_1:54580454-54580473 Msa0029280:intron 45.0%
AACAAGCGGGCCATATTGTA+CGG - chr1_1:54580490-54580509 Msa0029280:intron 45.0%
!! TGTTGGCTCTCCGTACAATA+TGG + chr1_1:54580503-54580522 None:intergenic 45.0%
TTGTACGGAGAGCCAACATT+TGG - chr1_1:54580505-54580524 Msa0029280:intron 45.0%
GGAGAGCCAACATTTGGAAA+AGG - chr1_1:54580511-54580530 Msa0029280:intron 45.0%
TTGTCAATATCTGTGTGCGC+AGG + chr1_1:54580687-54580706 None:intergenic 45.0%
TGCGCACACAGATATTGACA+AGG - chr1_1:54580686-54580705 Msa0029280:CDS 45.0%
CCAACCTACATCCAAATGCA+AGG + chr1_1:54580777-54580796 None:intergenic 45.0%
CCTTGCATTTGGATGTAGGT+TGG - chr1_1:54580774-54580793 Msa0029280:CDS 45.0%
! TGCATTTTGCAATTGCCTGC+AGG - chr1_1:54580845-54580864 Msa0029280:intron 45.0%
ACAATGTTGCCACAAACCTC+TGG - chr1_1:54581001-54581020 Msa0029280:five_prime_UTR 45.0%
!! TTTAAAAAAAAAAAAAAAAC+TGG + chr1_1:54580727-54580746 None:intergenic 5.0%
! TAGTGAGTGGTTTGAGGCAG+AGG - chr1_1:54573814-54573833 Msa0029280:three_prime_UTR 50.0%
GTTCTGCCTTCACTCTTCCA+TGG - chr1_1:54573843-54573862 Msa0029280:three_prime_UTR 50.0%
GGGTAACGAAGAGGGAAAGA+AGG + chr1_1:54573895-54573914 None:intergenic 50.0%
GTTGGAGTTTCCTTCGCAGA+AGG - chr1_1:54574137-54574156 Msa0029280:intron 50.0%
TCCTTCGCAGAAGGAGGAAA+TGG - chr1_1:54574146-54574165 Msa0029280:intron 50.0%
TCCATTTCCTCCTTCTGCGA+AGG + chr1_1:54574150-54574169 None:intergenic 50.0%
CATCGAGTGAGTGAGTGTCA+AGG + chr1_1:54574673-54574692 None:intergenic 50.0%
CTTGACACTCACTCACTCGA+TGG - chr1_1:54574671-54574690 Msa0029280:intron 50.0%
GAGGAGATTCTCTTCCGTCA+GGG + chr1_1:54575160-54575179 None:intergenic 50.0%
AGAGGAGATTCTCTTCCGTC+AGG + chr1_1:54575161-54575180 None:intergenic 50.0%
TCCACTCCTCAATCCCTAGA+AGG + chr1_1:54575415-54575434 None:intergenic 50.0%
GGTTGTCATCGGTGATTGTC+TGG - chr1_1:54575918-54575937 Msa0029280:intron 50.0%
!! GGAACTAAAGGCGCTCTAAC+TGG - chr1_1:54576540-54576559 Msa0029280:intron 50.0%
!! TAAAGGCGCTCTAACTGGAG+TGG - chr1_1:54576545-54576564 Msa0029280:intron 50.0%
!! AAAGGCGCTCTAACTGGAGT+GGG - chr1_1:54576546-54576565 Msa0029280:intron 50.0%
GATGGCATGTCTGCTTTGGT+AGG + chr1_1:54576588-54576607 None:intergenic 50.0%
ATCGGATGGCATGTCTGCTT+TGG + chr1_1:54576592-54576611 None:intergenic 50.0%
AAAGCAGACATGCCATCCGA+TGG - chr1_1:54576591-54576610 Msa0029280:intron 50.0%
GTCATTTCAGCTTCTCCAGG+AGG - chr1_1:54576621-54576640 Msa0029280:intron 50.0%
! CGAAAGCACAAGTGGCATGT+AGG + chr1_1:54576765-54576784 None:intergenic 50.0%
AGGTAGAGTCTCGTCTCAGT+TGG - chr1_1:54577104-54577123 Msa0029280:intron 50.0%
TCCATGTAGTCAATACCGCC+TGG - chr1_1:54577265-54577284 Msa0029280:intron 50.0%
!! ACCAGGCGGTATTGACTACA+TGG + chr1_1:54577269-54577288 None:intergenic 50.0%
ATGTAGTCAATACCGCCTGG+TGG - chr1_1:54577268-54577287 Msa0029280:intron 50.0%
! CAAAGTGTTCTTCCACCAGG+CGG + chr1_1:54577283-54577302 None:intergenic 50.0%
GGGGAATTATTTCCTGCAGC+AGG + chr1_1:54577939-54577958 None:intergenic 50.0%
AGCGCGCTCAATACTTAGTG+TGG + chr1_1:54578311-54578330 None:intergenic 50.0%
ACATGACTTCCCTGCCTTGT+TGG - chr1_1:54578333-54578352 Msa0029280:intron 50.0%
! CATGACTTCCCTGCCTTGTT+GGG - chr1_1:54578334-54578353 Msa0029280:intron 50.0%
AGGAACCTGCTTACTGCAGA+CGG - chr1_1:54578376-54578395 Msa0029280:intron 50.0%
CTTACTGCAGACGGGCATTT+GGG - chr1_1:54578385-54578404 Msa0029280:intron 50.0%
! TTCGATGTCTAGGGTTGTGG+TGG - chr1_1:54578518-54578537 Msa0029280:intron 50.0%
CCGTAATCTGTCATCCTTGC+AGG - chr1_1:54578838-54578857 Msa0029280:intron 50.0%
! AGTGGTGGTCTTTTCCCAGA+AGG - chr1_1:54579006-54579025 Msa0029280:intron 50.0%
TCGTGGGGTTCGAGATATAC+TGG - chr1_1:54579441-54579460 Msa0029280:intron 50.0%
CCAGAGGTTCAGAAGTTGCT+AGG + chr1_1:54579486-54579505 None:intergenic 50.0%
CCTAGCAACTTCTGAACCTC+TGG - chr1_1:54579483-54579502 Msa0029280:intron 50.0%
TGCAGGACATGCATGCATTG+AGG - chr1_1:54579658-54579677 Msa0029280:CDS 50.0%
GCAGGACATGCATGCATTGA+GGG - chr1_1:54579659-54579678 Msa0029280:CDS 50.0%
TTGGGTTTGGGCAGTTCGTA+CGG - chr1_1:54579691-54579710 Msa0029280:intron 50.0%
GTTATCTACGGTACCGCTGT+GGG + chr1_1:54579884-54579903 None:intergenic 50.0%
TGTTATCTACGGTACCGCTG+TGG + chr1_1:54579885-54579904 None:intergenic 50.0%
TGCAGTCCAGCAAAAACTCG+AGG - chr1_1:54580195-54580214 Msa0029280:intron 50.0%
GCAGTCCAGCAAAAACTCGA+GGG - chr1_1:54580196-54580215 Msa0029280:intron 50.0%
! AACCACCCTCGAGTTTTTGC+TGG + chr1_1:54580204-54580223 None:intergenic 50.0%
GATTCATGGACCTGACCGAA+AGG + chr1_1:54580241-54580260 None:intergenic 50.0%
!! TGCACCGGCTAATATTTCGC+TGG + chr1_1:54580461-54580480 None:intergenic 50.0%
TTTGAGCTCTCAGATGGCTC+AGG - chr1_1:54580630-54580649 Msa0029280:CDS 50.0%
! GATGTTGGTAGAGGATGGTC+AGG + chr1_1:54580807-54580826 None:intergenic 50.0%
! TGAGTGGTTTGAGGCAGAGG+TGG - chr1_1:54573817-54573836 Msa0029280:three_prime_UTR 55.0%
! TGGTTTGAGGCAGAGGTGGT+AGG - chr1_1:54573821-54573840 Msa0029280:three_prime_UTR 55.0%
GGAGTTTCCTTCGCAGAAGG+AGG - chr1_1:54574140-54574159 Msa0029280:intron 55.0%
! CTGTTTGTGCGGTTGGTTGC+TGG - chr1_1:54574202-54574221 Msa0029280:CDS 55.0%
ACACTCACTCACTCGATGGG+TGG - chr1_1:54574675-54574694 Msa0029280:intron 55.0%
! ATCTCCTCTTTCTGGAGGCG+TGG - chr1_1:54575172-54575191 Msa0029280:intron 55.0%
TTCTCCACGCCTCCAGAAAG+AGG + chr1_1:54575179-54575198 None:intergenic 55.0%
! GCCTTCTAGGGATTGAGGAG+TGG - chr1_1:54575411-54575430 Msa0029280:CDS 55.0%
! AAGGCGCTCTAACTGGAGTG+GGG - chr1_1:54576547-54576566 Msa0029280:intron 55.0%
GCTCTATATGCAGGACCTCC+TGG + chr1_1:54576639-54576658 None:intergenic 55.0%
GGAGGTCCTGCATATAGAGC+TGG - chr1_1:54576639-54576658 Msa0029280:intron 55.0%
ATGCAGCTGAACGCCTACAG+TGG - chr1_1:54576727-54576746 Msa0029280:intron 55.0%
TGCAGCTGAACGCCTACAGT+GGG - chr1_1:54576728-54576747 Msa0029280:intron 55.0%
CTGTGCAAGTTACCTGCTGC+AGG - chr1_1:54577924-54577943 Msa0029280:intron 55.0%
GGAACCTGCTTACTGCAGAC+GGG - chr1_1:54578377-54578396 Msa0029280:intron 55.0%
AATGCCCGTCTGCAGTAAGC+AGG + chr1_1:54578384-54578403 None:intergenic 55.0%
GCTTACTGCAGACGGGCATT+TGG - chr1_1:54578384-54578403 Msa0029280:intron 55.0%
TTCTGAACCTCTGGCTGTGC+TGG - chr1_1:54579492-54579511 Msa0029280:intron 55.0%
TGGGTTTGGGCAGTTCGTAC+GGG - chr1_1:54579692-54579711 Msa0029280:intron 55.0%
CCTTTCCTGTGATCCCACAG+CGG - chr1_1:54579868-54579887 Msa0029280:intron 55.0%
GTCCAGCAAAAACTCGAGGG+TGG - chr1_1:54580199-54580218 Msa0029280:intron 55.0%
ACCAGACACACCTTTCGGTC+AGG - chr1_1:54580228-54580247 Msa0029280:intron 55.0%
! ACCTGACCGAAAGGTGTGTC+TGG + chr1_1:54580232-54580251 None:intergenic 55.0%
ACGAAGAAGCAGGATCCTGC+AGG + chr1_1:54580863-54580882 None:intergenic 55.0%
TTCCGTCAGGGCCCCTTCAA+GGG + chr1_1:54575148-54575167 None:intergenic 60.0%
CCGCTGTGGGATCACAGGAA+AGG + chr1_1:54579871-54579890 None:intergenic 60.0%
GTCCCTTGAAGGGGCCCTGA+CGG - chr1_1:54575143-54575162 Msa0029280:intron 65.0%
CTTCCGTCAGGGCCCCTTCA+AGG + chr1_1:54575149-54575168 None:intergenic 65.0%
CGGTACCGCTGTGGGATCAC+AGG + chr1_1:54579876-54579895 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 54573737 54581121 54573737 ID=Msa0029280;Name=Msa0029280
chr1_1 mRNA 54573737 54581121 54573737 ID=Msa0029280-mRNA-1;Parent=Msa0029280;Name=Msa0029280-mRNA-1;_AED=0.12;_eAED=0.12;_QI=125|0.75|0.84|1|0.83|0.76|13|198|476
chr1_1 exon 54573737 54574066 54573737 ID=Msa0029280-mRNA-1:exon:16271;Parent=Msa0029280-mRNA-1
chr1_1 exon 54574151 54574244 54574151 ID=Msa0029280-mRNA-1:exon:16270;Parent=Msa0029280-mRNA-1
chr1_1 exon 54574325 54574422 54574325 ID=Msa0029280-mRNA-1:exon:16269;Parent=Msa0029280-mRNA-1
chr1_1 exon 54575345 54575453 54575345 ID=Msa0029280-mRNA-1:exon:16268;Parent=Msa0029280-mRNA-1
chr1_1 exon 54575923 54575998 54575923 ID=Msa0029280-mRNA-1:exon:16267;Parent=Msa0029280-mRNA-1
chr1_1 exon 54576853 54576971 54576853 ID=Msa0029280-mRNA-1:exon:16266;Parent=Msa0029280-mRNA-1
chr1_1 exon 54577285 54577353 54577285 ID=Msa0029280-mRNA-1:exon:16265;Parent=Msa0029280-mRNA-1
chr1_1 exon 54578113 54578321 54578113 ID=Msa0029280-mRNA-1:exon:16264;Parent=Msa0029280-mRNA-1
chr1_1 exon 54578430 54578512 54578430 ID=Msa0029280-mRNA-1:exon:16263;Parent=Msa0029280-mRNA-1
chr1_1 exon 54579555 54579704 54579555 ID=Msa0029280-mRNA-1:exon:16262;Parent=Msa0029280-mRNA-1
chr1_1 exon 54580615 54580720 54580615 ID=Msa0029280-mRNA-1:exon:16261;Parent=Msa0029280-mRNA-1
chr1_1 exon 54580738 54580851 54580738 ID=Msa0029280-mRNA-1:exon:16260;Parent=Msa0029280-mRNA-1
chr1_1 exon 54580925 54581121 54580925 ID=Msa0029280-mRNA-1:exon:16259;Parent=Msa0029280-mRNA-1
chr1_1 five_prime_UTR 54580997 54581121 54580997 ID=Msa0029280-mRNA-1:five_prime_utr;Parent=Msa0029280-mRNA-1
chr1_1 CDS 54580925 54580996 54580925 ID=Msa0029280-mRNA-1:cds;Parent=Msa0029280-mRNA-1
chr1_1 CDS 54580738 54580851 54580738 ID=Msa0029280-mRNA-1:cds;Parent=Msa0029280-mRNA-1
chr1_1 CDS 54580615 54580720 54580615 ID=Msa0029280-mRNA-1:cds;Parent=Msa0029280-mRNA-1
chr1_1 CDS 54579555 54579704 54579555 ID=Msa0029280-mRNA-1:cds;Parent=Msa0029280-mRNA-1
chr1_1 CDS 54578430 54578512 54578430 ID=Msa0029280-mRNA-1:cds;Parent=Msa0029280-mRNA-1
chr1_1 CDS 54578113 54578321 54578113 ID=Msa0029280-mRNA-1:cds;Parent=Msa0029280-mRNA-1
chr1_1 CDS 54577285 54577353 54577285 ID=Msa0029280-mRNA-1:cds;Parent=Msa0029280-mRNA-1
chr1_1 CDS 54576853 54576971 54576853 ID=Msa0029280-mRNA-1:cds;Parent=Msa0029280-mRNA-1
chr1_1 CDS 54575923 54575998 54575923 ID=Msa0029280-mRNA-1:cds;Parent=Msa0029280-mRNA-1
chr1_1 CDS 54575345 54575453 54575345 ID=Msa0029280-mRNA-1:cds;Parent=Msa0029280-mRNA-1
chr1_1 CDS 54574325 54574422 54574325 ID=Msa0029280-mRNA-1:cds;Parent=Msa0029280-mRNA-1
chr1_1 CDS 54574151 54574244 54574151 ID=Msa0029280-mRNA-1:cds;Parent=Msa0029280-mRNA-1
chr1_1 CDS 54573935 54574066 54573935 ID=Msa0029280-mRNA-1:cds;Parent=Msa0029280-mRNA-1
chr1_1 three_prime_UTR 54573737 54573934 54573737 ID=Msa0029280-mRNA-1:three_prime_utr;Parent=Msa0029280-mRNA-1
Gene Sequence

>Msa0029280

ATGGAGATCATTGCTAGCTCTGTAATCAATCCTTCTTTCCCTCTTCGTTACCCAACAATCTCCGTTTTTCAGGTTTCAAACTGGAACTGTTTTTCCGTAGTAGAATCAAGGTTTTCATTTTCACTCACACATAAGAGGAAGAAAGTTACTAAATTTTCAATTGGGGTGGTGCCAAAAGTAAACAACTTGGAGTTTCCTTCGCAGAAGGAGGAAATGGAACAAGGATTCTTCTGTGAAGCATGCTTCTTTACTGTTTGTGCGGTTGGTTGCTGGAGTTATGTTGGTTGTGTCGGGGCCCTGACGGAAGAGAATCTCCTCTTTCTGGAGGCGTGGAGAACAATTGACCGAGCATATATCGACAAGAATTTTAATGGACAGAGTTGGTTTAGGTATAGAGAAAATGCATTGCGCAACGAACCCATGAACAACCGTGAAGAGACATATATGGCGATAAGAAAGATGCTTGCCACATTGGATGATCCCTTCACTAGATTTTTAGAGCCTGAGAAGTTCAGAAGTTTGAGGTCTGGAACTAAAGGCGCTCTAACTGGAGTGGGGATATCAATAGGCTACCCTACCAAAGCAGACATGCCATCCGATGGACTTGTTGTCATTTCAGCTTCTCCAGGAGGTCCTGCATATAGAGCTGGTGTTTTGTCTGGAGATGTTATCCTGGCCATTGATGATATGAGCACAGAAAAGTTGGGTCTGTATGATGCAGCTGAACGCCTACAAGGACCTGATGGAAGCTCTGTTGCATTGACCATACGTAGTGGTTCTGACGTAAAGCACCTAGCTCTAACGCGAGAGAAAGTTACAGTCAATCCAGTGAAGTCAAGACTGTGCAAGTTACCTGCTGCAGGAAATAATTCCCCAACAGTTGGTTATATAAAATTAACATCGTTCAACCAAAATGCATCTCGTGCTATCAAAGAAGCAATCAATACGTTCAGGAGTAATAATGTAAATGCATTTGTTTTGGACCTCAGAGATAATAGGTTGGACAAAGGTGTGATTGTGTATATTTGTGATAGTCGTGGGGTTCGAGATATACTGGATACAGATGGAAGTAGTGCCCTAGCAACTTCTGAACCTCTGGCTGTGCTGGTAAACAAGGGAACTGCAAGTGCCAGCGAAATATTAGCCGGTGCATTGAAAGATAACAAGCGGGCCATATTGTACGGAGAGCCAACATTTGGAAAAGGGAAGATCCAATCAGTATTTGAGCTCTCAGATGGCTCAGGACTAGTTGTTACAGTTGCTCGCTACGAGACACCTGCGCACACAGATATTGACAAGGTTGGTGTCATTCCTGACCATCCTCTACCAACATCATTTCCTAAGGATGAAGATGCATTTTGCAATTGCCTGCAGGATCCTGCTTCTTCGTGTAATAATAATAATAACAGGGTCCAGTTATTTTCAAAATGA

Protein sequence

>Msa0029280

MEIIASSVINPSFPLRYPTISVFQVSNWNCFSVVESRFSFSLTHKRKKVTKFSIGVVPKVNNLEFPSQKEEMEQGFFCEACFFTVCAVGCWSYVGCVGALTEENLLFLEAWRTIDRAYIDKNFNGQSWFRYRENALRNEPMNNREETYMAIRKMLATLDDPFTRFLEPEKFRSLRSGTKGALTGVGISIGYPTKADMPSDGLVVISASPGGPAYRAGVLSGDVILAIDDMSTEKLGLYDAAERLQGPDGSSVALTIRSGSDVKHLALTREKVTVNPVKSRLCKLPAAGNNSPTVGYIKLTSFNQNASRAIKEAINTFRSNNVNAFVLDLRDNRLDKGVIVYICDSRGVRDILDTDGSSALATSEPLAVLVNKGTASASEILAGALKDNKRAILYGEPTFGKGKIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPLPTSFPKDEDAFCNCLQDPASSCNNNNNRVQLFSK*