AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1056790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1056790 MtrunA17_Chr7g0228371 91.732 254 20 1 1 254 1 253 7.37e-166 458
Msa1056790 MtrunA17_Chr4g0003601 31.953 169 98 2 65 216 82 250 1.66e-23 95.9
Msa1056790 MtrunA17_Chr2g0332821 28.571 210 132 3 26 218 33 241 9.26e-21 88.2
Msa1056790 MtrunA17_Chr2g0332811 32.515 163 93 2 64 209 81 243 1.48e-19 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1056790 AT5G14660.1 66.949 236 73 2 18 253 42 272 6.05e-111 320
Msa1056790 AT5G14660.3 66.949 236 73 2 18 253 42 272 6.05e-111 320
Msa1056790 AT5G14660.2 66.949 236 73 2 18 253 42 272 6.05e-111 320
Msa1056790 AT1G15390.1 33.918 171 96 3 63 216 82 252 8.04e-24 97.1

Find 75 sgRNAs with CRISPR-Local

Find 466 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAGGTCCCTTCTGGTTT+TGG 0.217039 7_2:-35627741 Msa1056790:CDS
TCATCACTTAGCGGAATTTC+TGG 0.218170 7_2:-35627598 Msa1056790:three_prime_UTR
AGGAATTAATGTTCAACTTA+TGG 0.242265 7_2:-35631255 Msa1056790:CDS
CATCATTAACAAACTCAAAA+TGG 0.289466 7_2:+35627287 None:intergenic
TAGTATTCGTGGACAGTTAC+AGG 0.295514 7_2:-35629089 Msa1056790:intron
GCATCAATCTTCACAGATTC+TGG 0.306156 7_2:+35630433 None:intergenic
CATTACCCGTTCACAATTTG+TGG 0.347278 7_2:-35633803 Msa1056790:five_prime_UTR
AGAGCAATCGTCATTTATTC+AGG 0.352566 7_2:-35627348 Msa1056790:three_prime_UTR
ATTGAGTATTTACTAACTCT+TGG 0.377226 7_2:+35631179 None:intergenic
TTCTACAGAACTGATGGTAT+TGG 0.377239 7_2:-35631296 Msa1056790:intron
TTTCCTCATACTTCATTTCA+AGG 0.393212 7_2:+35627808 None:intergenic
ATGACGATTGCTCTGATCAT+AGG 0.408582 7_2:+35627357 None:intergenic
TTGAGTATTTACTAACTCTT+GGG 0.412246 7_2:+35631180 None:intergenic
GGCTGGAGGAGGAGAGAGTC+AGG 0.424664 7_2:+35633689 None:intergenic
GTCAGGTGGAAGAAGCGGTT+TGG 0.434099 7_2:+35633706 None:intergenic
TAACAAACTCAAAATGGAAA+TGG 0.439330 7_2:+35627293 None:intergenic
TTGAACATTAATTCCTACTT+GGG 0.445401 7_2:+35631262 None:intergenic
ATTTATTCAGGTTGCTCTGA+AGG 0.454735 7_2:-35627336 Msa1056790:three_prime_UTR
AACCCTCATTGAAGAGTGTT+CGG 0.455481 7_2:+35631153 None:intergenic
GTTGAACATTAATTCCTACT+TGG 0.459640 7_2:+35631261 None:intergenic
TTGGGAAATCATGATCTTCA+AGG 0.467476 7_2:-35627722 Msa1056790:intron
CAAGTGCAGAACAGCGGTGG+TGG 0.467569 7_2:+35633737 None:intergenic
AATATCCAGACCCCAAGTTA+AGG 0.468504 7_2:-35633492 Msa1056790:CDS
GGACTTGGTGCGGCTGGAGG+AGG 0.469407 7_2:+35633678 None:intergenic
CCTTCACCACGTTCGCCTAC+CGG 0.476721 7_2:+35631224 None:intergenic
CAGTCATTCTCTCAAAGAAA+AGG 0.478584 7_2:+35629125 None:intergenic
TATAAGTTTGTAACTAGTAG+TGG 0.480122 7_2:-35627399 Msa1056790:three_prime_UTR
GAAGTTCTTGATAGTATTCG+TGG 0.485870 7_2:-35629100 Msa1056790:CDS
CCGTTCACAATTTGTGGCGA+TGG 0.494050 7_2:-35633797 Msa1056790:exon
TCATGTTGAAATATCCGTGC+TGG 0.495228 7_2:+35630364 None:intergenic
CATCGCCACAAATTGTGAAC+GGG 0.503371 7_2:+35633798 None:intergenic
GTGCAGAACAGCGGTGGTGG+TGG 0.507025 7_2:+35633740 None:intergenic
AGAACAAGAAAGGTCCCTTC+TGG 0.507355 7_2:-35627747 Msa1056790:CDS
TTTACGTCAGCATTAATGCC+GGG 0.511687 7_2:+35631119 None:intergenic
GGCCCTTGAAATGAAGTATG+AGG 0.512810 7_2:-35627811 Msa1056790:CDS
TTCCTCATACTTCATTTCAA+GGG 0.514907 7_2:+35627809 None:intergenic
AGAAAGTCGCAGAACAAGAA+AGG 0.519818 7_2:-35627757 Msa1056790:CDS
TTTATTCAGGTTGCTCTGAA+GGG 0.520496 7_2:-35627335 Msa1056790:three_prime_UTR
ACATGAATTTGACCATCTAC+AGG 0.526666 7_2:-35630347 Msa1056790:intron
CAAAATGGAAATGGTCACTA+AGG 0.530817 7_2:+35627302 None:intergenic
ATTGTCAGAGATGCTGAATA+TGG 0.532713 7_2:-35627549 Msa1056790:three_prime_UTR
TTTCTTAAGATTATCATCAA+AGG 0.537118 7_2:+35633447 None:intergenic
TAATGATGAAGAAGATGACT+TGG 0.540318 7_2:+35633763 None:intergenic
CTTTACGTCAGCATTAATGC+CGG 0.542608 7_2:+35631118 None:intergenic
AGCGGACTTGGTGCGGCTGG+AGG 0.547910 7_2:+35633675 None:intergenic
ATGAAGTATGAGGAAATGAC+TGG 0.549132 7_2:-35627801 Msa1056790:CDS
CCGGTAGGCGAACGTGGTGA+AGG 0.552415 7_2:-35631224 Msa1056790:CDS
GAGGGTTGTCTATCTTTCCC+CGG 0.565473 7_2:-35631137 Msa1056790:CDS
TTCAATCCGGTAGGCGAACG+TGG 0.572000 7_2:-35631230 Msa1056790:CDS
GTGGAAGAAGCGGTTTGGAA+TGG 0.573783 7_2:+35633711 None:intergenic
AGAGAGTCAGGTGGAAGAAG+CGG 0.574880 7_2:+35633701 None:intergenic
TCAGAGATGCTGAATATGGT+TGG 0.579427 7_2:-35627545 Msa1056790:three_prime_UTR
ATATTAGGCTCATCACTTAG+CGG 0.587915 7_2:-35627607 Msa1056790:three_prime_UTR
GATTGATGCACGTGATGTCA+AGG 0.593167 7_2:-35630419 Msa1056790:CDS
GGTCTTTCAGCACCCCAAGT+AGG 0.597078 7_2:-35631275 Msa1056790:CDS
CATGATTTCCCAAAACCAGA+AGG 0.597253 7_2:+35627732 None:intergenic
ATTCAGGTTGCTCTGAAGGG+TGG 0.600084 7_2:-35627332 Msa1056790:three_prime_UTR
CACGTGATGTCAAGGGAACA+CGG 0.600242 7_2:-35630411 Msa1056790:CDS
GTTTGTCTGGCCTTCCAGCA+CGG 0.600965 7_2:-35630378 Msa1056790:CDS
CTAGTAGTGGATAGTCATCA+AGG 0.604478 7_2:-35627386 Msa1056790:three_prime_UTR
CCATCGCCACAAATTGTGAA+CGG 0.606144 7_2:+35633797 None:intergenic
CAGCAAGTGCAGAACAGCGG+TGG 0.606678 7_2:+35633734 None:intergenic
GTTGAAATATCCGTGCTGGA+AGG 0.611276 7_2:+35630368 None:intergenic
TGAACATTAATTCCTACTTG+GGG 0.618628 7_2:+35631263 None:intergenic
AATGATGAAGAAGATGACTT+GGG 0.622365 7_2:+35633764 None:intergenic
AACCGAACACTCTTCAATGA+GGG 0.628227 7_2:-35631155 Msa1056790:CDS
AAATCATCTCCAAATCACAC+TGG 0.629947 7_2:+35627238 None:intergenic
ATTGATGCACGTGATGTCAA+GGG 0.634587 7_2:-35630418 Msa1056790:CDS
GATGAAGAAGATGACTTGGG+AGG 0.636397 7_2:+35633767 None:intergenic
GAACCGAACACTCTTCAATG+AGG 0.639867 7_2:-35631156 Msa1056790:CDS
TTACGTCAGCATTAATGCCG+GGG 0.640683 7_2:+35631120 None:intergenic
ATATATAGAAGAAAAGTGAA+AGG 0.642680 7_2:-35627509 Msa1056790:three_prime_UTR
ATGATTTCCCAAAACCAGAA+GGG 0.648338 7_2:+35627733 None:intergenic
TGGCAGCAAGTGCAGAACAG+CGG 0.685500 7_2:+35633731 None:intergenic
TGGAGGAGGAGAGAGTCAGG+TGG 0.687629 7_2:+35633692 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTTATTAAGATTAAA+GGG + chr7_2:35628230-35628249 None:intergenic 10.0%
!!! ATTTTTCTTATTAAGATTAA+AGG + chr7_2:35628231-35628250 None:intergenic 10.0%
!! ATTTACAAAATAAATCAAAA+AGG + chr7_2:35630289-35630308 None:intergenic 10.0%
!!! TTCTAATTTTGTATTAATTA+GGG + chr7_2:35631696-35631715 None:intergenic 10.0%
!!! AATTGTAAAAATCTTATTTT+TGG + chr7_2:35632929-35632948 None:intergenic 10.0%
!!! TTTTCTTATTAAGATTAAAG+GGG + chr7_2:35628229-35628248 None:intergenic 15.0%
!! GTCAAAATAAATTGTTAATA+AGG + chr7_2:35628649-35628668 None:intergenic 15.0%
!!! TACTTTTACTATTAGAATAA+GGG + chr7_2:35628801-35628820 None:intergenic 15.0%
!!! ATGTTTTTATAAAACAAGAT+TGG - chr7_2:35628835-35628854 Msa1056790:intron 15.0%
!! TTTATTGAATGTTACATTAA+CGG - chr7_2:35629644-35629663 Msa1056790:intron 15.0%
!! AAATTGCAAATATAATAGAT+GGG + chr7_2:35629987-35630006 None:intergenic 15.0%
!! AAAATTGCAAATATAATAGA+TGG + chr7_2:35629988-35630007 None:intergenic 15.0%
!! AAATATTTAATGAACCTAAA+AGG + chr7_2:35630180-35630199 None:intergenic 15.0%
!! TACATAAACAAAAAAAACTT+CGG + chr7_2:35630372-35630391 None:intergenic 15.0%
!! ACATGAAAAGAAAAAAAAAA+GGG + chr7_2:35631247-35631266 None:intergenic 15.0%
!! TTGAGTTATTTATAAACTTA+TGG - chr7_2:35631364-35631383 Msa1056790:intron 15.0%
!!! GTTCTAATTTTGTATTAATT+AGG + chr7_2:35631697-35631716 None:intergenic 15.0%
!! TATATAATTGTTATATCTAC+AGG - chr7_2:35631823-35631842 Msa1056790:intron 15.0%
!! ATATAATTGTTATATCTACA+GGG - chr7_2:35631824-35631843 Msa1056790:intron 15.0%
!! AACATAAATCATAAATCAAA+AGG - chr7_2:35632504-35632523 Msa1056790:intron 15.0%
!! ACATAAATCATAAATCAAAA+GGG - chr7_2:35632505-35632524 Msa1056790:intron 15.0%
!!! CACATTTTTTTTTCTTTTTT+TGG - chr7_2:35632608-35632627 Msa1056790:intron 15.0%
!!! TATTTTTGGTATGAATTTTA+TGG + chr7_2:35632915-35632934 None:intergenic 15.0%
!!! AATTAAACCATCTATTTTTA+AGG - chr7_2:35632945-35632964 Msa1056790:intron 15.0%
!!! AATTTTTAACTTATCTATGA+GGG + chr7_2:35633074-35633093 None:intergenic 15.0%
!!! TAATTTTTAACTTATCTATG+AGG + chr7_2:35633075-35633094 None:intergenic 15.0%
!! GATAAGTTAAAAATTATTAC+AGG - chr7_2:35633079-35633098 Msa1056790:intron 15.0%
!!! TTGTTTTTTTTGAATGAAGT+TGG - chr7_2:35627425-35627444 Msa1056790:three_prime_UTR 20.0%
!!! TTATTCTTTTTCCTTAACTT+GGG + chr7_2:35627497-35627516 None:intergenic 20.0%
!!! TTTATTCTTTTTCCTTAACT+TGG + chr7_2:35627498-35627517 None:intergenic 20.0%
!! TTTCTTAAGATTATCATCAA+AGG + chr7_2:35627531-35627550 None:intergenic 20.0%
!! TTATAACTTCATTTCATCTT+TGG + chr7_2:35627613-35627632 None:intergenic 20.0%
!!! AATAAGTTGAAAATAGCTTA+TGG - chr7_2:35627656-35627675 Msa1056790:intron 20.0%
!! TATGATTTAAGCATTCAATT+AGG - chr7_2:35628588-35628607 Msa1056790:intron 20.0%
!!! ATTTTTTAAAGTTGTTGAGA+TGG - chr7_2:35628687-35628706 Msa1056790:intron 20.0%
!!! TTTTTTAAAGTTGTTGAGAT+GGG - chr7_2:35628688-35628707 Msa1056790:intron 20.0%
!!! GAGCTAATTTTAAAATCATA+GGG + chr7_2:35628752-35628771 None:intergenic 20.0%
!!! TGAGCTAATTTTAAAATCAT+AGG + chr7_2:35628753-35628772 None:intergenic 20.0%
!!! GTACTTTTACTATTAGAATA+AGG + chr7_2:35628802-35628821 None:intergenic 20.0%
!!! TAATTTCTTGTTATAGTTCT+TGG - chr7_2:35629010-35629029 Msa1056790:intron 20.0%
!!! TCAACTTTTTTCTGTTATAT+TGG + chr7_2:35629218-35629237 None:intergenic 20.0%
!! ATTAAGAAGAGAAAAAGATA+AGG + chr7_2:35629346-35629365 None:intergenic 20.0%
!! AAAACAATAGAGAAACAAAA+AGG - chr7_2:35629371-35629390 Msa1056790:intron 20.0%
!!! ATTTTGAATCTAGCTTTTTT+TGG - chr7_2:35629914-35629933 Msa1056790:intron 20.0%
!!! TTTTGAATCTAGCTTTTTTT+GGG - chr7_2:35629915-35629934 Msa1056790:intron 20.0%
!! TTCATACTAAGTTCAAAAAT+TGG + chr7_2:35629958-35629977 None:intergenic 20.0%
!!! ATTTTTGAACTTAGTATGAA+TGG - chr7_2:35629958-35629977 Msa1056790:intron 20.0%
!!! CGTGTTTTATTTTCTTTTAT+TGG - chr7_2:35630395-35630414 Msa1056790:CDS 20.0%
!! ATTCAAACCTATAAATAGAA+AGG - chr7_2:35630824-35630843 Msa1056790:intron 20.0%
!!! AAAGAAAGTGTTTAAAAACA+CGG + chr7_2:35631035-35631054 None:intergenic 20.0%
!! CACATGAAAAGAAAAAAAAA+AGG + chr7_2:35631248-35631267 None:intergenic 20.0%
!!! CTTTTTTTTTTCTTTTCATG+TGG - chr7_2:35631246-35631265 Msa1056790:CDS 20.0%
!!! TTTATAAACTTATGGATTGA+TGG - chr7_2:35631372-35631391 Msa1056790:intron 20.0%
!!! AGTTTAATGTTTTGATTTAG+AGG - chr7_2:35631416-35631435 Msa1056790:intron 20.0%
!! ATCTATATGTGATCTTAATA+TGG + chr7_2:35631719-35631738 None:intergenic 20.0%
!! AACAGTCTTAATTATATGAA+AGG + chr7_2:35631759-35631778 None:intergenic 20.0%
!!! GTTTTTTCAAGAGTTATTTA+TGG + chr7_2:35632046-35632065 None:intergenic 20.0%
!! GCATAAATATTTAGCAATTA+TGG - chr7_2:35632342-35632361 Msa1056790:intron 20.0%
!! ATTAATTGGTAAGATTAAAC+AGG + chr7_2:35632377-35632396 None:intergenic 20.0%
!! TTGTAAAATCATCTACTTAA+AGG - chr7_2:35632428-35632447 Msa1056790:intron 20.0%
!! AACTTCATTAAAGAAGAAAA+AGG - chr7_2:35632667-35632686 Msa1056790:intron 20.0%
!!! TTAGGTTTGTTAATTATTGA+GGG + chr7_2:35632748-35632767 None:intergenic 20.0%
!!! TTTAGGTTTGTTAATTATTG+AGG + chr7_2:35632749-35632768 None:intergenic 20.0%
!! TAATTAACAAACCTAAAACT+TGG - chr7_2:35632752-35632771 Msa1056790:intron 20.0%
!! ACCAAAACTTATCTATAATT+GGG + chr7_2:35633132-35633151 None:intergenic 20.0%
!! AACCAAAACTTATCTATAAT+TGG + chr7_2:35633133-35633152 None:intergenic 20.0%
!!! AGTTTTGGTTAAATTATTAC+AGG - chr7_2:35633143-35633162 Msa1056790:intron 20.0%
!!! TTATTTTACAGGTCAATATT+AGG - chr7_2:35633353-35633372 Msa1056790:intron 20.0%
!! ATATATAGAAGAAAAGTGAA+AGG - chr7_2:35633466-35633485 Msa1056790:CDS 20.0%
! AAGTCATAGATAGATACTTA+TGG + chr7_2:35627375-35627394 None:intergenic 25.0%
!!! TATTCTTTTTCCTTAACTTG+GGG + chr7_2:35627496-35627515 None:intergenic 25.0%
!!! GCTACAAGCTTTTTTTTTTA+TGG - chr7_2:35627633-35627652 Msa1056790:intron 25.0%
! ATAGCTTATGGATATTTCAT+AGG - chr7_2:35627668-35627687 Msa1056790:intron 25.0%
! AAGATAGTTGTAAGACTATT+TGG + chr7_2:35627712-35627731 None:intergenic 25.0%
! AGTCTTACAACTATCTTATA+AGG - chr7_2:35627715-35627734 Msa1056790:intron 25.0%
! GTCTTACAACTATCTTATAA+GGG - chr7_2:35627716-35627735 Msa1056790:intron 25.0%
! TTGACTAGGAAATATTTGTT+TGG - chr7_2:35627792-35627811 Msa1056790:CDS 25.0%
! TGACTAGGAAATATTTGTTT+GGG - chr7_2:35627793-35627812 Msa1056790:CDS 25.0%
! TTTGTAATTTATCTGCATTC+AGG - chr7_2:35628028-35628047 Msa1056790:intron 25.0%
! TTGTAATTTATCTGCATTCA+GGG - chr7_2:35628029-35628048 Msa1056790:intron 25.0%
! TGACAATTACCAAACAAATA+GGG + chr7_2:35628103-35628122 None:intergenic 25.0%
! AAGATTAAAGGGGTAAAATT+TGG + chr7_2:35628219-35628238 None:intergenic 25.0%
!!! TTATCTACAGAAAAGTACTT+AGG + chr7_2:35628410-35628429 None:intergenic 25.0%
! TGTTATAGTTCTTGGATATT+AGG - chr7_2:35629018-35629037 Msa1056790:intron 25.0%
! GTTATAGTTCTTGGATATTA+GGG - chr7_2:35629019-35629038 Msa1056790:intron 25.0%
!!! CTATTTCTACCAACAAAATA+GGG + chr7_2:35629053-35629072 None:intergenic 25.0%
!!! ATATCAGTGTTCTGAAAAAA+TGG + chr7_2:35629289-35629308 None:intergenic 25.0%
!!! TATTTTTAATCATGTAAGCC+AGG - chr7_2:35629481-35629500 Msa1056790:intron 25.0%
!! ATTTTTAATCATGTAAGCCA+GGG - chr7_2:35629482-35629501 Msa1056790:intron 25.0%
! CATGATTCAAATAACATTGA+GGG - chr7_2:35629523-35629542 Msa1056790:intron 25.0%
! AAATGTTGTAAGACAATACA+AGG + chr7_2:35629569-35629588 None:intergenic 25.0%
! TTGTATTGTCTTACAACATT+TGG - chr7_2:35629568-35629587 Msa1056790:intron 25.0%
! TTGAACATTAATTCCTACTT+GGG + chr7_2:35629716-35629735 None:intergenic 25.0%
! AGGAATTAATGTTCAACTTA+TGG - chr7_2:35629720-35629739 Msa1056790:intron 25.0%
! TTGAGTATTTACTAACTCTT+GGG + chr7_2:35629798-35629817 None:intergenic 25.0%
! ATTGAGTATTTACTAACTCT+TGG + chr7_2:35629799-35629818 None:intergenic 25.0%
! AGAAGAGGATAACAAAATAA+GGG + chr7_2:35630035-35630054 None:intergenic 25.0%
! ATTTAATGAACCTAAAAGGA+TGG + chr7_2:35630176-35630195 None:intergenic 25.0%
! AAGGAACTCAAATAAATTAC+AGG + chr7_2:35630203-35630222 None:intergenic 25.0%
! ACTTAACAATTCTTTCAGAA+AGG + chr7_2:35630222-35630241 None:intergenic 25.0%
!! TTTCTGAAAGAATTGTTAAG+TGG - chr7_2:35630221-35630240 Msa1056790:intron 25.0%
!! CAAGCAATTTTTCTTTAGTT+GGG + chr7_2:35630435-35630454 None:intergenic 25.0%
!! ACAAGCAATTTTTCTTTAGT+TGG + chr7_2:35630436-35630455 None:intergenic 25.0%
!! TAATAAGACTTGTTTGAGTA+GGG + chr7_2:35630508-35630527 None:intergenic 25.0%
!! ATAATAAGACTTGTTTGAGT+AGG + chr7_2:35630509-35630528 None:intergenic 25.0%
!!! TCAAACAAGTCTTATTATTG+CGG - chr7_2:35630511-35630530 Msa1056790:intron 25.0%
!!! ATGGTATTTTTATGAACCTT+TGG - chr7_2:35630731-35630750 Msa1056790:intron 25.0%
! CATATAACAAGTGTTATGAT+AGG - chr7_2:35630765-35630784 Msa1056790:intron 25.0%
! CTATAAATAGAAAGGATCTA+GGG - chr7_2:35630832-35630851 Msa1056790:intron 25.0%
! TATAAATAGAAAGGATCTAG+GGG - chr7_2:35630833-35630852 Msa1056790:intron 25.0%
!!! TAAGTTATTTTTACACGACA+CGG + chr7_2:35631343-35631362 None:intergenic 25.0%
! TATATATAACCAACAAGTAG+TGG + chr7_2:35631786-35631805 None:intergenic 25.0%
! AATATAAGAGACCTATTTAG+AGG - chr7_2:35632148-35632167 Msa1056790:intron 25.0%
! TCAATCGTCAACAATTATAT+TGG + chr7_2:35632259-35632278 None:intergenic 25.0%
! TAATTTATTAACAGACCTGT+CGG + chr7_2:35632400-35632419 None:intergenic 25.0%
! ACAGGTCTGTTAATAAATTA+TGG - chr7_2:35632400-35632419 Msa1056790:intron 25.0%
!!! TCTTTTTTTGGCAAAAAAAG+AGG - chr7_2:35632620-35632639 Msa1056790:intron 25.0%
! TCTTCTTTAATGAAGTTTAG+AGG + chr7_2:35632664-35632683 None:intergenic 25.0%
! AGAAAAAGGAAACAAGAAAA+AGG - chr7_2:35632681-35632700 Msa1056790:intron 25.0%
!! TTGTTAATTATTGAGGGTTT+TGG + chr7_2:35632742-35632761 None:intergenic 25.0%
!!! TTTACATGGTTTGTTTGTTT+GGG + chr7_2:35632831-35632850 None:intergenic 25.0%
!! AAAGAAATTGGACCAATTTT+TGG + chr7_2:35633033-35633052 None:intergenic 25.0%
! AGATAGCTAATGAAAGAAAT+TGG + chr7_2:35633045-35633064 None:intergenic 25.0%
! ACTTATCTATAATTGGGTTT+CGG + chr7_2:35633126-35633145 None:intergenic 25.0%
!! ACCCAATTATAGATAAGTTT+TGG - chr7_2:35633128-35633147 Msa1056790:intron 25.0%
! TATAAGTTTGTAACTAGTAG+TGG - chr7_2:35633576-35633595 Msa1056790:intron 25.0%
! TAACAAACTCAAAATGGAAA+TGG + chr7_2:35633685-35633704 None:intergenic 25.0%
! CATCATTAACAAACTCAAAA+TGG + chr7_2:35633691-35633710 None:intergenic 25.0%
AATGATGAAGAAGATGACTT+GGG + chr7_2:35627214-35627233 None:intergenic 30.0%
TAATGATGAAGAAGATGACT+TGG + chr7_2:35627215-35627234 None:intergenic 30.0%
! GGATATTTCACTATTTTCAG+CGG + chr7_2:35627470-35627489 None:intergenic 30.0%
AGGAAAAAGAATAAACGCAT+TGG - chr7_2:35627503-35627522 Msa1056790:three_prime_UTR 30.0%
ACTTCATTTCATCTTTGGAT+TGG + chr7_2:35627608-35627627 None:intergenic 30.0%
CATAAGCTATAAGCTCAAAA+AGG + chr7_2:35627758-35627777 None:intergenic 30.0%
TCTAATAAGCTCATTTGACT+AGG - chr7_2:35627778-35627797 Msa1056790:CDS 30.0%
GACTAGGAAATATTTGTTTG+GGG - chr7_2:35627794-35627813 Msa1056790:CDS 30.0%
GTGACAATTACCAAACAAAT+AGG + chr7_2:35628104-35628123 None:intergenic 30.0%
CTGATCGAATTTGTAATGTT+TGG + chr7_2:35628307-35628326 None:intergenic 30.0%
AATAGCATATGAGCTTATAG+AGG + chr7_2:35628346-35628365 None:intergenic 30.0%
! TTTATGATAGTGAAAGACAG+AGG + chr7_2:35628557-35628576 None:intergenic 30.0%
! TATTAGAATAAGGGTGTACT+CGG + chr7_2:35628792-35628811 None:intergenic 30.0%
!! GCTATTTCTACCAACAAAAT+AGG + chr7_2:35629054-35629073 None:intergenic 30.0%
!! TTTTGTTGGTAGAAATAGCT+AGG - chr7_2:35629055-35629074 Msa1056790:intron 30.0%
! TTTGTTGGTAGAAATAGCTA+GGG - chr7_2:35629056-35629075 Msa1056790:intron 30.0%
! AACCATTTTGTGACAACTTT+TGG - chr7_2:35629315-35629334 Msa1056790:intron 30.0%
! ACCATTTTGTGACAACTTTT+GGG - chr7_2:35629316-35629335 Msa1056790:intron 30.0%
GTTCAAAAGTTGTCACAAAA+TGG - chr7_2:35629438-35629457 Msa1056790:intron 30.0%
GCATGATTCAAATAACATTG+AGG - chr7_2:35629522-35629541 Msa1056790:intron 30.0%
ACTATGCTAGGTATTATTGA+TGG + chr7_2:35629601-35629620 None:intergenic 30.0%
GTAACATTCAATAAATCGCA+AGG + chr7_2:35629639-35629658 None:intergenic 30.0%
ATTGAATGTTACATTAACGG+TGG - chr7_2:35629647-35629666 Msa1056790:intron 30.0%
TGAACATTAATTCCTACTTG+GGG + chr7_2:35629715-35629734 None:intergenic 30.0%
GTTGAACATTAATTCCTACT+TGG + chr7_2:35629717-35629736 None:intergenic 30.0%
! TCAACTTATGGTTTTCAATC+CGG - chr7_2:35629732-35629751 Msa1056790:intron 30.0%
!!! GCTTTTTTTGGGCTAATTTA+TGG - chr7_2:35629926-35629945 Msa1056790:intron 30.0%
! CGTTTGAAGTTTGAAAATCT+TGG - chr7_2:35630008-35630027 Msa1056790:intron 30.0%
CAGAAGAGGATAACAAAATA+AGG + chr7_2:35630036-35630055 None:intergenic 30.0%
!!! CATTTTTCTGGTTTCATTCT+TGG + chr7_2:35630115-35630134 None:intergenic 30.0%
CAAGAATGAAACCAGAAAAA+TGG - chr7_2:35630113-35630132 Msa1056790:intron 30.0%
GGATGGTTATGCTATATATT+TGG + chr7_2:35630159-35630178 None:intergenic 30.0%
! TATAGCATAACCATCCTTTT+AGG - chr7_2:35630163-35630182 Msa1056790:intron 30.0%
AGATAGCAAACAGAACAAAA+TGG + chr7_2:35630346-35630365 None:intergenic 30.0%
TCAAAAAACTTACCTGTAGA+TGG + chr7_2:35630643-35630662 None:intergenic 30.0%
CCTAGATCCTTTCTATTTAT+AGG + chr7_2:35630834-35630853 None:intergenic 30.0%
CCTATAAATAGAAAGGATCT+AGG - chr7_2:35630831-35630850 Msa1056790:intron 30.0%
GAAAAGAAAAAAAAAAGGGC+AGG + chr7_2:35631243-35631262 None:intergenic 30.0%
TTCTATAAAACCAGAAACTG+AGG + chr7_2:35631281-35631300 None:intergenic 30.0%
!! AGAAGTACAATTTTTCCCTT+TGG - chr7_2:35631473-35631492 Msa1056790:intron 30.0%
TCAAATTCGAGATTCTACTA+TGG + chr7_2:35631558-35631577 None:intergenic 30.0%
GCTAGTGAATAGTATTAACA+GGG - chr7_2:35631663-35631682 Msa1056790:intron 30.0%
TGATGTATTTCTCATGTCAA+GGG + chr7_2:35631941-35631960 None:intergenic 30.0%
ATGATGTATTTCTCATGTCA+AGG + chr7_2:35631942-35631961 None:intergenic 30.0%
AACTCTTGAAAAAACATGTC+TGG - chr7_2:35632051-35632070 Msa1056790:intron 30.0%
ACTCTTGAAAAAACATGTCT+GGG - chr7_2:35632052-35632071 Msa1056790:intron 30.0%
GATTGCTTAATCAAGATTTG+AGG + chr7_2:35632100-35632119 None:intergenic 30.0%
AATCTTGATTAAGCAATCGA+TGG - chr7_2:35632102-35632121 Msa1056790:intron 30.0%
AACATCTTTCACCTCTAAAT+AGG + chr7_2:35632162-35632181 None:intergenic 30.0%
AAAATAATTGCCACAAAGCA+AGG - chr7_2:35632206-35632225 Msa1056790:intron 30.0%
ATATTTGTTTCCTTGCTTTG+TGG + chr7_2:35632219-35632238 None:intergenic 30.0%
TCGTCAACAATTATATTGGT+CGG + chr7_2:35632255-35632274 None:intergenic 30.0%
ACAATCTTTCTTCTGACTAA+TGG - chr7_2:35632278-35632297 Msa1056790:intron 30.0%
! TCTTTGTTTGAATCCCTATA+AGG + chr7_2:35632463-35632482 None:intergenic 30.0%
CAAGAAAAAGGAAACAACAA+AGG - chr7_2:35632693-35632712 Msa1056790:intron 30.0%
!! TATTTCTAGTCAGGTTGTTA+AGG + chr7_2:35632792-35632811 None:intergenic 30.0%
ACAACCTGACTAGAAATAAA+AGG - chr7_2:35632794-35632813 Msa1056790:intron 30.0%
!! CTTTACATGGTTTGTTTGTT+TGG + chr7_2:35632832-35632851 None:intergenic 30.0%
AACATAGGTTTGTCTTTACA+TGG + chr7_2:35632845-35632864 None:intergenic 30.0%
CTTGGAACCTTAAAAATAGA+TGG + chr7_2:35632955-35632974 None:intergenic 30.0%
!!! CATCTATTTTTAAGGTTCCA+AGG - chr7_2:35632953-35632972 Msa1056790:intron 30.0%
!!! AAATTGGACCAATTTTTGGT+TGG + chr7_2:35633029-35633048 None:intergenic 30.0%
TTCCTCATACTTCATTTCAA+GGG + chr7_2:35633169-35633188 None:intergenic 30.0%
TTTCCTCATACTTCATTTCA+AGG + chr7_2:35633170-35633189 None:intergenic 30.0%
!! TTTCTATCTTTTCAGGACTT+GGG + chr7_2:35633203-35633222 None:intergenic 30.0%
! GTTTTGTGAAGCTGAAAAAG+CGG + chr7_2:35627321-35627340 None:intergenic 35.0%
ATAGATACTTATGGTGAGAG+TGG + chr7_2:35627366-35627385 None:intergenic 35.0%
CTATCTTATAAGGGTCTGTT+TGG - chr7_2:35627725-35627744 Msa1056790:exon 35.0%
TTGCAATTTCTCTGCATTCA+GGG + chr7_2:35627867-35627886 None:intergenic 35.0%
TTTGCAATTTCTCTGCATTC+AGG + chr7_2:35627868-35627887 None:intergenic 35.0%
TCAGGGACTAAATTGACTAA+CGG - chr7_2:35627953-35627972 Msa1056790:intron 35.0%
GACTAATCTCCCTATTTGTT+TGG - chr7_2:35628091-35628110 Msa1056790:intron 35.0%
AACAAACAAAGGCAGACTAA+GGG + chr7_2:35628458-35628477 None:intergenic 35.0%
AAACAAACAAAGGCAGACTA+AGG + chr7_2:35628459-35628478 None:intergenic 35.0%
! TCTGCCTTTGTTTGTTTCAA+CGG - chr7_2:35628462-35628481 Msa1056790:intron 35.0%
TACTCCGTTGAAACAAACAA+AGG + chr7_2:35628469-35628488 None:intergenic 35.0%
CTGCACGATAAGAAATTTGA+AGG - chr7_2:35628516-35628535 Msa1056790:intron 35.0%
AGTTCTTGGATATTAGGGAA+TGG - chr7_2:35629024-35629043 Msa1056790:intron 35.0%
! TTGTTGGTAGAAATAGCTAG+GGG - chr7_2:35629057-35629076 Msa1056790:intron 35.0%
TGTAAGACCAGTAAATCACA+AGG + chr7_2:35629168-35629187 None:intergenic 35.0%
TCCCAAAAGTTGTCACAAAA+TGG + chr7_2:35629320-35629339 None:intergenic 35.0%
AGAGAATAAGAACACAACGT+GGG - chr7_2:35629399-35629418 Msa1056790:intron 35.0%
TATTGATATTTCCATCACCC+TGG + chr7_2:35629502-35629521 None:intergenic 35.0%
! TCCTTTTTCTACAGAACTGA+TGG - chr7_2:35629673-35629692 Msa1056790:intron 35.0%
ACCATCAGTTCTGTAGAAAA+AGG + chr7_2:35629677-35629696 None:intergenic 35.0%
TTCTACAGAACTGATGGTAT+TGG - chr7_2:35629679-35629698 Msa1056790:intron 35.0%
TTGCTAGAAAGAAAAAACCG+TGG + chr7_2:35630082-35630101 None:intergenic 35.0%
GAAACCAGAAAAATGGAACT+TGG - chr7_2:35630120-35630139 Msa1056790:intron 35.0%
!! GCTATATATTTGGTTCTTGC+TGG + chr7_2:35630149-35630168 None:intergenic 35.0%
! TCTAAAGTTCATGACTATGC+TGG - chr7_2:35630456-35630475 Msa1056790:intron 35.0%
ACATGAATTTGACCATCTAC+AGG - chr7_2:35630628-35630647 Msa1056790:intron 35.0%
TTAATTCCCCTTTCACCATT+GGG + chr7_2:35630793-35630812 None:intergenic 35.0%
ATTAATTCCCCTTTCACCAT+TGG + chr7_2:35630794-35630813 None:intergenic 35.0%
TGATACTCAGTAAACTTGTC+AGG - chr7_2:35630870-35630889 Msa1056790:intron 35.0%
AGAGAGTGAGAGAAAACTTA+GGG + chr7_2:35631098-35631117 None:intergenic 35.0%
! GTACAATTTTTCCCTTTGGT+AGG - chr7_2:35631477-35631496 Msa1056790:intron 35.0%
! TAATACTATTCACTAGCCTC+TGG + chr7_2:35631660-35631679 None:intergenic 35.0%
GGCTAGTGAATAGTATTAAC+AGG - chr7_2:35631662-35631681 Msa1056790:intron 35.0%
! TGAAAGGTGTAGATGTTTGT+GGG + chr7_2:35631743-35631762 None:intergenic 35.0%
! ATGAAAGGTGTAGATGTTTG+TGG + chr7_2:35631744-35631763 None:intergenic 35.0%
CAGTCATTCTCTCAAAGAAA+AGG + chr7_2:35631853-35631872 None:intergenic 35.0%
! GAAGTTCTTGATAGTATTCG+TGG - chr7_2:35631875-35631894 Msa1056790:intron 35.0%
ATGCGTATTAAAAGCTTAGC+TGG - chr7_2:35631973-35631992 Msa1056790:intron 35.0%
CTCGTGATACAATGAATCTA+AGG + chr7_2:35632000-35632019 None:intergenic 35.0%
CAAGAGTTATTTATGGATGC+AGG + chr7_2:35632039-35632058 None:intergenic 35.0%
! ATGGTGTCAAGTTCTTGATT+GGG - chr7_2:35632121-35632140 Msa1056790:intron 35.0%
TGTCTAAGTCTATGATGTGA+AGG - chr7_2:35632181-35632200 Msa1056790:intron 35.0%
ATTATCTTGCATGAGAGTGA+GGG + chr7_2:35632307-35632326 None:intergenic 35.0%
TATTATCTTGCATGAGAGTG+AGG + chr7_2:35632308-35632327 None:intergenic 35.0%
ATCTTACCAATTAATCCGAC+AGG - chr7_2:35632382-35632401 Msa1056790:intron 35.0%
! AAAGGCTAGTTATGCCTTAT+AGG - chr7_2:35632446-35632465 Msa1056790:intron 35.0%
! AAGGCTAGTTATGCCTTATA+GGG - chr7_2:35632447-35632466 Msa1056790:intron 35.0%
ACAACAAAGGAAACAAGATG+AGG - chr7_2:35632706-35632725 Msa1056790:intron 35.0%
CAACAAAGGAAACAAGATGA+GGG - chr7_2:35632707-35632726 Msa1056790:intron 35.0%
AACAAAGGAAACAAGATGAG+GGG - chr7_2:35632708-35632727 Msa1056790:intron 35.0%
ACCTGACTAGAAATAAAAGG+AGG - chr7_2:35632797-35632816 Msa1056790:intron 35.0%
!!! TCCTCCTTTTATTTCTAGTC+AGG + chr7_2:35632801-35632820 None:intergenic 35.0%
AAGACAAACCTATGTTTGCA+AGG - chr7_2:35632849-35632868 Msa1056790:intron 35.0%
AGACAAACCTATGTTTGCAA+GGG - chr7_2:35632850-35632869 Msa1056790:intron 35.0%
TTTCCCATGTGTATAGAGAA+GGG + chr7_2:35632892-35632911 None:intergenic 35.0%
ATCAGTCTCCAACCAAAAAT+TGG - chr7_2:35633018-35633037 Msa1056790:intron 35.0%
ATTATTACAGGCCCTTGAAA+TGG - chr7_2:35633091-35633110 Msa1056790:intron 35.0%
ATGAAGTATGAGGAAATGAC+TGG - chr7_2:35633174-35633193 Msa1056790:intron 35.0%
!! CTTTCTATCTTTTCAGGACT+TGG + chr7_2:35633204-35633223 None:intergenic 35.0%
ATGATTTCCCAAAACCAGAA+GGG + chr7_2:35633245-35633264 None:intergenic 35.0%
TTGGGAAATCATGATCTTCA+AGG - chr7_2:35633253-35633272 Msa1056790:intron 35.0%
ATCAATGCAAAAGACAAACG+TGG + chr7_2:35633296-35633315 None:intergenic 35.0%
ATATTAGGCTCATCACTTAG+CGG - chr7_2:35633368-35633387 Msa1056790:intron 35.0%
ATTGTCAGAGATGCTGAATA+TGG - chr7_2:35633426-35633445 Msa1056790:CDS 35.0%
AGAGCAATCGTCATTTATTC+AGG - chr7_2:35633627-35633646 Msa1056790:intron 35.0%
!! ATTTATTCAGGTTGCTCTGA+AGG - chr7_2:35633639-35633658 Msa1056790:intron 35.0%
!! TTTATTCAGGTTGCTCTGAA+GGG - chr7_2:35633640-35633659 Msa1056790:intron 35.0%
CAAAATGGAAATGGTCACTA+AGG + chr7_2:35633676-35633695 None:intergenic 35.0%
! CATTTTTCTCCAGTGTGATT+TGG - chr7_2:35633728-35633747 Msa1056790:CDS 35.0%
AAATCATCTCCAAATCACAC+TGG + chr7_2:35633740-35633759 None:intergenic 35.0%
CATTACCCGTTCACAATTTG+TGG - chr7_2:35627172-35627191 Msa1056790:three_prime_UTR 40.0%
AATATCCAGACCCCAAGTTA+AGG - chr7_2:35627483-35627502 Msa1056790:three_prime_UTR 40.0%
!! TTTTTCCTTAACTTGGGGTC+TGG + chr7_2:35627491-35627510 None:intergenic 40.0%
GACTACTCATTTCCCATTCA+GGG + chr7_2:35627836-35627855 None:intergenic 40.0%
TGACTACTCATTTCCCATTC+AGG + chr7_2:35627837-35627856 None:intergenic 40.0%
ACCAACAGAGTCTACATTCA+GGG + chr7_2:35627896-35627915 None:intergenic 40.0%
AGACTCTGTTGGTCAATTTC+AGG - chr7_2:35627903-35627922 Msa1056790:intron 40.0%
GACTCTGTTGGTCAATTTCA+GGG - chr7_2:35627904-35627923 Msa1056790:intron 40.0%
TCAGGGACTAAAGTGACTAA+CGG - chr7_2:35627921-35627940 Msa1056790:intron 40.0%
ACTAACGGAGTCTACATTCA+GGG - chr7_2:35627936-35627955 Msa1056790:intron 40.0%
ACTAACGGAGTATGCATTCA+GGG - chr7_2:35627968-35627987 Msa1056790:intron 40.0%
CTTTAGTCCCTGAATAGGAA+AGG + chr7_2:35628070-35628089 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+AGG + chr7_2:35627852-35627871 None:intergenic 40.0%
ATACACACTCATTCTGCGTT+TGG - chr7_2:35628619-35628638 Msa1056790:intron 40.0%
AATCAACAAACCAATCCCAG+AGG - chr7_2:35628898-35628917 Msa1056790:intron 40.0%
!!! CAGCTCATGCTATTTTGTCA+GGG + chr7_2:35628974-35628993 None:intergenic 40.0%
!!! TCAGCTCATGCTATTTTGTC+AGG + chr7_2:35628975-35628994 None:intergenic 40.0%
! GAATGGCTACCCTATTTTGT+TGG - chr7_2:35629041-35629060 Msa1056790:intron 40.0%
! TGTTGGTAGAAATAGCTAGG+GGG - chr7_2:35629058-35629077 Msa1056790:intron 40.0%
GGGGATAGAAATCATAGTCT+GGG - chr7_2:35629077-35629096 Msa1056790:intron 40.0%
TTCTGCAATTGAGTGAGTGT+AGG + chr7_2:35629116-35629135 None:intergenic 40.0%
GTCTTACACCCAAAGTTTGT+CGG - chr7_2:35629138-35629157 Msa1056790:intron 40.0%
AAGGTGAACCGACAAACTTT+GGG + chr7_2:35629149-35629168 None:intergenic 40.0%
GAGAGAATAAGAACACAACG+TGG - chr7_2:35629398-35629417 Msa1056790:intron 40.0%
CGTTAGAAAGCAACTATGCT+AGG + chr7_2:35629613-35629632 None:intergenic 40.0%
! CTTATGGTTTTCAATCCGGT+AGG - chr7_2:35629736-35629755 Msa1056790:intron 40.0%
AACCGAACACTCTTCAATGA+GGG - chr7_2:35629820-35629839 Msa1056790:intron 40.0%
!! AACCCTCATTGAAGAGTGTT+CGG + chr7_2:35629825-35629844 None:intergenic 40.0%
TTTACGTCAGCATTAATGCC+GGG + chr7_2:35629859-35629878 None:intergenic 40.0%
CTTTACGTCAGCATTAATGC+CGG + chr7_2:35629860-35629879 None:intergenic 40.0%
!! GATGCCAAGTTCCATTTTTC+TGG + chr7_2:35630127-35630146 None:intergenic 40.0%
GTTATCATGACGAGCTTCAA+TGG - chr7_2:35630243-35630262 Msa1056790:intron 40.0%
GTTCATGACTATGCTGGATA+TGG - chr7_2:35630462-35630481 Msa1056790:intron 40.0%
GCATCAATCTTCACAGATTC+TGG + chr7_2:35630545-35630564 None:intergenic 40.0%
ATTGATGCACGTGATGTCAA+GGG - chr7_2:35630557-35630576 Msa1056790:intron 40.0%
TCATGTTGAAATATCCGTGC+TGG + chr7_2:35630614-35630633 None:intergenic 40.0%
GCATTTCTGCTTGTAGAAGA+TGG - chr7_2:35630712-35630731 Msa1056790:intron 40.0%
ATATGCAGACGACATACCAA+AGG + chr7_2:35630750-35630769 None:intergenic 40.0%
TGGTGAAAGGGGAATTAATG+AGG - chr7_2:35630795-35630814 Msa1056790:intron 40.0%
AATAGAAAGGATCTAGGGGT+CGG - chr7_2:35630837-35630856 Msa1056790:intron 40.0%
TTGTAAGAACATCCCCAATG+AGG - chr7_2:35630924-35630943 Msa1056790:intron 40.0%
TGTAAGAACATCCCCAATGA+GGG - chr7_2:35630925-35630944 Msa1056790:intron 40.0%
! TTGGCTCAACTGTTTTGCAA+CGG - chr7_2:35630970-35630989 Msa1056790:intron 40.0%
CCACAAAATATGACCCACTT+CGG + chr7_2:35631002-35631021 None:intergenic 40.0%
! CGAAGTGGGTCATATTTTGT+GGG - chr7_2:35631000-35631019 Msa1056790:intron 40.0%
GAGAGAGTGAGAGAAAACTT+AGG + chr7_2:35631099-35631118 None:intergenic 40.0%
GAAAAAAAAAAGGGCAGGCA+GGG + chr7_2:35631238-35631257 None:intergenic 40.0%
AGAAAAAAAAAAGGGCAGGC+AGG + chr7_2:35631239-35631258 None:intergenic 40.0%
ACCAGAAACTGAGGAAGTAA+GGG + chr7_2:35631272-35631291 None:intergenic 40.0%
AACCAGAAACTGAGGAAGTA+AGG + chr7_2:35631273-35631292 None:intergenic 40.0%
GCTCATAAGATCCTACCAAA+GGG + chr7_2:35631491-35631510 None:intergenic 40.0%
ATGAGCCATGTTACAATCCT+CGG - chr7_2:35631505-35631524 Msa1056790:intron 40.0%
AGATTCTACTATGGATCTGG+AGG + chr7_2:35631549-35631568 None:intergenic 40.0%
TCGAGATTCTACTATGGATC+TGG + chr7_2:35631552-35631571 None:intergenic 40.0%
!! TTTCTGGTTACATTGACCAG+AGG - chr7_2:35631641-35631660 Msa1056790:intron 40.0%
TAGTATTCGTGGACAGTTAC+AGG - chr7_2:35631886-35631905 Msa1056790:intron 40.0%
TCTCATGTCAAGGGAAAGAA+TGG + chr7_2:35631932-35631951 None:intergenic 40.0%
! GATGGTGTCAAGTTCTTGAT+TGG - chr7_2:35632120-35632139 Msa1056790:intron 40.0%
AACAGACCTGTCGGATTAAT+TGG + chr7_2:35632391-35632410 None:intergenic 40.0%
TTGGCAAAAAAAGAGGTAGC+AGG - chr7_2:35632627-35632646 Msa1056790:intron 40.0%
TGGCAAAAAAAGAGGTAGCA+GGG - chr7_2:35632628-35632647 Msa1056790:intron 40.0%
ACAAAGGAAACAAGATGAGG+GGG - chr7_2:35632709-35632728 Msa1056790:intron 40.0%
! AGCTTGGTATGCCAAGTTTT+AGG + chr7_2:35632766-35632785 None:intergenic 40.0%
CAGGTTGTTAAGGAAAAGCT+TGG + chr7_2:35632782-35632801 None:intergenic 40.0%
GTTCCCTTCTCTATACACAT+GGG - chr7_2:35632886-35632905 Msa1056790:intron 40.0%
GTTTCCCATGTGTATAGAGA+AGG + chr7_2:35632893-35632912 None:intergenic 40.0%
GGTGTATGTGTCCATTTCAA+GGG + chr7_2:35633105-35633124 None:intergenic 40.0%
! CTGCGACTTTCTATCTTTTC+AGG + chr7_2:35633210-35633229 None:intergenic 40.0%
AGAAAGTCGCAGAACAAGAA+AGG - chr7_2:35633218-35633237 Msa1056790:intron 40.0%
CATGATTTCCCAAAACCAGA+AGG + chr7_2:35633246-35633265 None:intergenic 40.0%
!!! CTGCTTGCTGCTTATTTTAC+AGG - chr7_2:35633342-35633361 Msa1056790:intron 40.0%
TCATCACTTAGCGGAATTTC+TGG - chr7_2:35633377-35633396 Msa1056790:intron 40.0%
TCAGAGATGCTGAATATGGT+TGG - chr7_2:35633430-35633449 Msa1056790:CDS 40.0%
!! CTAGTAGTGGATAGTCATCA+AGG - chr7_2:35633589-35633608 Msa1056790:intron 40.0%
ATGACGATTGCTCTGATCAT+AGG + chr7_2:35633621-35633640 None:intergenic 40.0%
CATCGCCACAAATTGTGAAC+GGG + chr7_2:35627180-35627199 None:intergenic 45.0%
CCATCGCCACAAATTGTGAA+CGG + chr7_2:35627181-35627200 None:intergenic 45.0%
! GATGAAGAAGATGACTTGGG+AGG + chr7_2:35627211-35627230 None:intergenic 45.0%
! TGAAGCTGAAAAAGCGGACT+TGG + chr7_2:35627315-35627334 None:intergenic 45.0%
TAGTCACGTTAGTCCCTGAA+TGG - chr7_2:35627820-35627839 Msa1056790:intron 45.0%
AGTCACGTTAGTCCCTGAAT+GGG - chr7_2:35627821-35627840 Msa1056790:intron 45.0%
TCCCTGAATGTAGACTCTGT+TGG - chr7_2:35627892-35627911 Msa1056790:intron 45.0%
GACCAACAGAGTCTACATTC+AGG + chr7_2:35627897-35627916 None:intergenic 45.0%
GACTAACGGAGTCTACATTC+AGG - chr7_2:35627935-35627954 Msa1056790:intron 45.0%
GACTAACGGAGTATGCATTC+AGG - chr7_2:35627967-35627986 Msa1056790:intron 45.0%
TGACGACTCCTTTCCTATTC+AGG - chr7_2:35628059-35628078 Msa1056790:intron 45.0%
GACGACTCCTTTCCTATTCA+GGG - chr7_2:35628060-35628079 Msa1056790:intron 45.0%
TATAAAGCAGGGACACCTCT+GGG + chr7_2:35628916-35628935 None:intergenic 45.0%
TTATAAAGCAGGGACACCTC+TGG + chr7_2:35628917-35628936 None:intergenic 45.0%
GAGGACACGGTTATAAAGCA+GGG + chr7_2:35628927-35628946 None:intergenic 45.0%
AGAGGACACGGTTATAAAGC+AGG + chr7_2:35628928-35628947 None:intergenic 45.0%
TATAACCGTGTCCTCTGTTC+TGG - chr7_2:35628932-35628951 Msa1056790:intron 45.0%
ATAACCGTGTCCTCTGTTCT+GGG - chr7_2:35628933-35628952 Msa1056790:intron 45.0%
GGGGGATAGAAATCATAGTC+TGG - chr7_2:35629076-35629095 Msa1056790:intron 45.0%
CAAGGTGAACCGACAAACTT+TGG + chr7_2:35629150-35629169 None:intergenic 45.0%
CGGTTCACCTTGTGATTTAC+TGG - chr7_2:35629158-35629177 Msa1056790:intron 45.0%
AATCATGTAAGCCAGGGTGA+TGG - chr7_2:35629488-35629507 Msa1056790:intron 45.0%
GAACCGAACACTCTTCAATG+AGG - chr7_2:35629819-35629838 Msa1056790:intron 45.0%
TTACGTCAGCATTAATGCCG+GGG + chr7_2:35629858-35629877 None:intergenic 45.0%
CGGCATTAATGCTGACGTAA+AGG - chr7_2:35629858-35629877 Msa1056790:intron 45.0%
TTATCCTCTTCTGACCAACC+TGG - chr7_2:35630043-35630062 Msa1056790:intron 45.0%
GATTGATGCACGTGATGTCA+AGG - chr7_2:35630556-35630575 Msa1056790:intron 45.0%
! CGGTTTTCAGTCAGTTTGTC+TGG - chr7_2:35630584-35630603 Msa1056790:intron 45.0%
GTTGAAATATCCGTGCTGGA+AGG + chr7_2:35630610-35630629 None:intergenic 45.0%
GTGTTATGATAGGCACCCAA+TGG - chr7_2:35630775-35630794 Msa1056790:intron 45.0%
ATAGGCACCCAATGGTGAAA+GGG - chr7_2:35630783-35630802 Msa1056790:intron 45.0%
ATAGAAAGGATCTAGGGGTC+GGG - chr7_2:35630838-35630857 Msa1056790:intron 45.0%
GGGGATGTTCTTACAATGCA+AGG + chr7_2:35630920-35630939 None:intergenic 45.0%
TAGTCTACGATCCCTCATTG+GGG + chr7_2:35630939-35630958 None:intergenic 45.0%
CTAGTCTACGATCCCTCATT+GGG + chr7_2:35630940-35630959 None:intergenic 45.0%
AAATATGACCCACTTCGGCA+AGG + chr7_2:35630997-35631016 None:intergenic 45.0%
! CCGAAGTGGGTCATATTTTG+TGG - chr7_2:35630999-35631018 Msa1056790:intron 45.0%
CACTTTCTTTGATGAGACGC+AGG - chr7_2:35631045-35631064 Msa1056790:intron 45.0%
AGAGAATGCACAGACGAGAA+CGG + chr7_2:35631178-35631197 None:intergenic 45.0%
AAAGGTGGAGAACATGTTGC+AGG + chr7_2:35631215-35631234 None:intergenic 45.0%
TACACGACACGGTTCAAACA+GGG + chr7_2:35631332-35631351 None:intergenic 45.0%
TTACACGACACGGTTCAAAC+AGG + chr7_2:35631333-35631352 None:intergenic 45.0%
GGCTCATAAGATCCTACCAA+AGG + chr7_2:35631492-35631511 None:intergenic 45.0%
TGAGCCATGTTACAATCCTC+GGG - chr7_2:35631506-35631525 Msa1056790:intron 45.0%
GTAACCCGAGGATTGTAACA+TGG + chr7_2:35631513-35631532 None:intergenic 45.0%
GGATAAAAGATCGTAACCCG+AGG + chr7_2:35631525-35631544 None:intergenic 45.0%
TTCTACTATGGATCTGGAGG+AGG + chr7_2:35631546-35631565 None:intergenic 45.0%
AGAAAGCTGAGCATCTGCAA+TGG + chr7_2:35631626-35631645 None:intergenic 45.0%
ATTGCAGATGCTCAGCTTTC+TGG - chr7_2:35631625-35631644 Msa1056790:intron 45.0%
CTGTTCATGCCACTACTTGT+TGG - chr7_2:35631774-35631793 Msa1056790:intron 45.0%
TGTATCACGAGCTCCTATCT+AGG - chr7_2:35632009-35632028 Msa1056790:intron 45.0%
GTATCACGAGCTCCTATCTA+GGG - chr7_2:35632010-35632029 Msa1056790:intron 45.0%
CAAAAAAAGAGGTAGCAGGG+TGG - chr7_2:35632631-35632650 Msa1056790:intron 45.0%
CAAAGGAAACAAGATGAGGG+GGG - chr7_2:35632710-35632729 Msa1056790:intron 45.0%
! GCTGATTCCCTTGCAAACAT+AGG + chr7_2:35632860-35632879 None:intergenic 45.0%
TTGCAAGGGAATCAGCACAT+TGG - chr7_2:35632864-35632883 Msa1056790:intron 45.0%
GGTTCCCTTCTCTATACACA+TGG - chr7_2:35632885-35632904 Msa1056790:intron 45.0%
CGGTGTATGTGTCCATTTCA+AGG + chr7_2:35633106-35633125 None:intergenic 45.0%
GGCCCTTGAAATGAAGTATG+AGG - chr7_2:35633164-35633183 Msa1056790:intron 45.0%
AGAACAAGAAAGGTCCCTTC+TGG - chr7_2:35633228-35633247 Msa1056790:intron 45.0%
!!! AGAAAGGTCCCTTCTGGTTT+TGG - chr7_2:35633234-35633253 Msa1056790:intron 45.0%
!!! GAAAGGTCCCTTCTGGTTTT+GGG - chr7_2:35633235-35633254 Msa1056790:intron 45.0%
CCGTTCACAATTTGTGGCGA+TGG - chr7_2:35627178-35627197 Msa1056790:three_prime_UTR 50.0%
! GTGGAAGAAGCGGTTTGGAA+TGG + chr7_2:35627267-35627286 None:intergenic 50.0%
AGAGAGTCAGGTGGAAGAAG+CGG + chr7_2:35627277-35627296 None:intergenic 50.0%
!! CTGAAAAAGCGGACTTGGTG+CGG + chr7_2:35627310-35627329 None:intergenic 50.0%
AAGTCCCAGAACAGAGGACA+CGG + chr7_2:35628940-35628959 None:intergenic 50.0%
AGACAGAAGTCCCAGAACAG+AGG + chr7_2:35628946-35628965 None:intergenic 50.0%
GAGGGTTGTCTATCTTTCCC+CGG - chr7_2:35629838-35629857 Msa1056790:intron 50.0%
!! AAAGCCAGGTTGGTCAGAAG+AGG + chr7_2:35630050-35630069 None:intergenic 50.0%
!! CTTCTGACCAACCTGGCTTT+TGG - chr7_2:35630050-35630069 Msa1056790:intron 50.0%
CACGTGATGTCAAGGGAACA+CGG - chr7_2:35630564-35630583 Msa1056790:intron 50.0%
GATAGGCACCCAATGGTGAA+AGG - chr7_2:35630782-35630801 Msa1056790:intron 50.0%
TAGGCACCCAATGGTGAAAG+GGG - chr7_2:35630784-35630803 Msa1056790:intron 50.0%
CCTAGTCTACGATCCCTCAT+TGG + chr7_2:35630941-35630960 None:intergenic 50.0%
CCAATGAGGGATCGTAGACT+AGG - chr7_2:35630938-35630957 Msa1056790:intron 50.0%
GTAGACTAGGATCGCACGTT+TGG - chr7_2:35630951-35630970 Msa1056790:intron 50.0%
CAAGAAGGAGCAACATCGCA+GGG + chr7_2:35631135-35631154 None:intergenic 50.0%
AAAAAAGGGCAGGCAGGGAA+AGG + chr7_2:35631233-35631252 None:intergenic 50.0%
GCCCTTACTTCCTCAGTTTC+TGG - chr7_2:35631268-35631287 Msa1056790:CDS 50.0%
GACACGGTTCAAACAGGGTA+GGG + chr7_2:35631327-35631346 None:intergenic 50.0%
TTGAGCGCTTACCCCAAATG+AGG - chr7_2:35631594-35631613 Msa1056790:intron 50.0%
TGAGCGCTTACCCCAAATGA+GGG - chr7_2:35631595-35631614 Msa1056790:intron 50.0%
AATGGAGCTCCCCTCATTTG+GGG + chr7_2:35631608-35631627 None:intergenic 50.0%
CAATGGAGCTCCCCTCATTT+GGG + chr7_2:35631609-35631628 None:intergenic 50.0%
GGATGCAGGTTTCCCTAGAT+AGG + chr7_2:35632025-35632044 None:intergenic 50.0%
AAACAAGATGAGGGGGGACT+AGG - chr7_2:35632716-35632735 Msa1056790:intron 50.0%
CTAACGATGCTATCGTGCCT+TGG + chr7_2:35632973-35632992 None:intergenic 50.0%
! TGATTCTCAGCTGGTGGTGA+TGG + chr7_2:35633002-35633021 None:intergenic 50.0%
! GTTGGAGACTGATTCTCAGC+TGG + chr7_2:35633011-35633030 None:intergenic 50.0%
!! ATTCAGGTTGCTCTGAAGGG+TGG - chr7_2:35633643-35633662 Msa1056790:intron 50.0%
TGGCAGCAAGTGCAGAACAG+CGG + chr7_2:35627247-35627266 None:intergenic 55.0%
GTCAGGTGGAAGAAGCGGTT+TGG + chr7_2:35627272-35627291 None:intergenic 55.0%
GGTCTTTCAGCACCCCAAGT+AGG - chr7_2:35629700-35629719 Msa1056790:intron 55.0%
TTCAATCCGGTAGGCGAACG+TGG - chr7_2:35629745-35629764 Msa1056790:intron 55.0%
GCACTCACCAAAAGCCAGGT+TGG + chr7_2:35630060-35630079 None:intergenic 55.0%
!! CTGGCTTTTGGTGAGTGCCA+CGG - chr7_2:35630062-35630081 Msa1056790:intron 55.0%
! GTTTGTCTGGCCTTCCAGCA+CGG - chr7_2:35630597-35630616 Msa1056790:intron 55.0%
CAACATCGCAGGGAGGAGAT+GGG + chr7_2:35631125-35631144 None:intergenic 55.0%
GCAAGAAGGAGCAACATCGC+AGG + chr7_2:35631136-35631155 None:intergenic 55.0%
GGTGGAGAACATGTTGCAGG+CGG + chr7_2:35631212-35631231 None:intergenic 55.0%
TTCAAACAGGGTAGGGCAGG+GGG + chr7_2:35631320-35631339 None:intergenic 55.0%
GTTCAAACAGGGTAGGGCAG+GGG + chr7_2:35631321-35631340 None:intergenic 55.0%
GGTTCAAACAGGGTAGGGCA+GGG + chr7_2:35631322-35631341 None:intergenic 55.0%
CGACACGGTTCAAACAGGGT+AGG + chr7_2:35631328-35631347 None:intergenic 55.0%
GAGCGCTTACCCCAAATGAG+GGG - chr7_2:35631596-35631615 Msa1056790:intron 55.0%
GCAATGGAGCTCCCCTCATT+TGG + chr7_2:35631610-35631629 None:intergenic 55.0%
TGTGCGCGCGCTTATGTTTG+TGG + chr7_2:35632560-35632579 None:intergenic 55.0%
! GGAGACTGATTCTCAGCTGG+TGG + chr7_2:35633008-35633027 None:intergenic 55.0%
CAAGTGCAGAACAGCGGTGG+TGG + chr7_2:35627241-35627260 None:intergenic 60.0%
CAGCAAGTGCAGAACAGCGG+TGG + chr7_2:35627244-35627263 None:intergenic 60.0%
TGGAGGAGGAGAGAGTCAGG+TGG + chr7_2:35627286-35627305 None:intergenic 60.0%
!! AAAAGCGGACTTGGTGCGGC+TGG + chr7_2:35627306-35627325 None:intergenic 60.0%
!! AGCAGGGACACCTCTGGGAT+TGG + chr7_2:35628911-35628930 None:intergenic 60.0%
CCTTCACCACGTTCGCCTAC+CGG + chr7_2:35629754-35629773 None:intergenic 60.0%
CGTGGCACTCACCAAAAGCC+AGG + chr7_2:35630064-35630083 None:intergenic 60.0%
TGCAACGGACCTTGCCGAAG+TGG - chr7_2:35630985-35631004 Msa1056790:intron 60.0%
GCAACGGACCTTGCCGAAGT+GGG - chr7_2:35630986-35631005 Msa1056790:intron 60.0%
GCAACATCGCAGGGAGGAGA+TGG + chr7_2:35631126-35631145 None:intergenic 60.0%
GAAGGAGCAACATCGCAGGG+AGG + chr7_2:35631132-35631151 None:intergenic 60.0%
AAAGGGCAGGCAGGGAAAGG+TGG + chr7_2:35631230-35631249 None:intergenic 60.0%
CGGTTCAAACAGGGTAGGGC+AGG + chr7_2:35631323-35631342 None:intergenic 60.0%
! GTGCAGAACAGCGGTGGTGG+TGG + chr7_2:35627238-35627257 None:intergenic 65.0%
GGCTGGAGGAGGAGAGAGTC+AGG + chr7_2:35627289-35627308 None:intergenic 65.0%
CCGGTAGGCGAACGTGGTGA+AGG - chr7_2:35629751-35629770 Msa1056790:intron 65.0%
!! GGACTTGGTGCGGCTGGAGG+AGG + chr7_2:35627300-35627319 None:intergenic 70.0%
!! AGCGGACTTGGTGCGGCTGG+AGG + chr7_2:35627303-35627322 None:intergenic 70.0%
CGCGCTCGCACACACACGCA+TGG - chr7_2:35632584-35632603 Msa1056790:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 35627166 35633831 35627166 ID=Msa1056790;Name=Msa1056790
chr7_2 mRNA 35627166 35633831 35627166 ID=Msa1056790-mRNA-1;Parent=Msa1056790;Name=Msa1056790-mRNA-1;_AED=0.04;_eAED=0.04;_QI=31|1|1|1|0.83|0.71|7|476|254
chr7_2 exon 35627166 35627633 35627166 ID=Msa1056790-mRNA-1:exon:6919;Parent=Msa1056790-mRNA-1
chr7_2 exon 35627723 35627832 35627723 ID=Msa1056790-mRNA-1:exon:6918;Parent=Msa1056790-mRNA-1
chr7_2 exon 35629090 35629152 35629090 ID=Msa1056790-mRNA-1:exon:6917;Parent=Msa1056790-mRNA-1
chr7_2 exon 35630348 35630458 35630348 ID=Msa1056790-mRNA-1:exon:6916;Parent=Msa1056790-mRNA-1
chr7_2 exon 35631118 35631310 35631118 ID=Msa1056790-mRNA-1:exon:6915;Parent=Msa1056790-mRNA-1
chr7_2 exon 35633415 35633553 35633415 ID=Msa1056790-mRNA-1:exon:6914;Parent=Msa1056790-mRNA-1
chr7_2 exon 35633644 35633831 35633644 ID=Msa1056790-mRNA-1:exon:6913;Parent=Msa1056790-mRNA-1
chr7_2 five_prime_UTR 35633801 35633831 35633801 ID=Msa1056790-mRNA-1:five_prime_utr;Parent=Msa1056790-mRNA-1
chr7_2 CDS 35633644 35633800 35633644 ID=Msa1056790-mRNA-1:cds;Parent=Msa1056790-mRNA-1
chr7_2 CDS 35633415 35633553 35633415 ID=Msa1056790-mRNA-1:cds;Parent=Msa1056790-mRNA-1
chr7_2 CDS 35631118 35631310 35631118 ID=Msa1056790-mRNA-1:cds;Parent=Msa1056790-mRNA-1
chr7_2 CDS 35630348 35630458 35630348 ID=Msa1056790-mRNA-1:cds;Parent=Msa1056790-mRNA-1
chr7_2 CDS 35629090 35629152 35629090 ID=Msa1056790-mRNA-1:cds;Parent=Msa1056790-mRNA-1
chr7_2 CDS 35627731 35627832 35627731 ID=Msa1056790-mRNA-1:cds;Parent=Msa1056790-mRNA-1
chr7_2 three_prime_UTR 35627723 35627730 35627723 ID=Msa1056790-mRNA-1:three_prime_utr;Parent=Msa1056790-mRNA-1
chr7_2 three_prime_UTR 35627166 35627633 35627166 ID=Msa1056790-mRNA-1:three_prime_utr;Parent=Msa1056790-mRNA-1
Gene Sequence

>Msa1056790

ATGGCTTCACTCCTCCCAAGTCATCTTCTTCATCATTACCACCACCACCGCTGTTCTGCACTTGCTGCCATTCCAAACCGCTTCTTCCACCTGACTCTCTCCTCCTCCAGCCGCACCAAGTCCGCTTTTTCAGCTTCACAAAACGAACTCGCTTCTCTTGGTGATTTAGAATTTGAAGCGCCGCTGAAAATAGTGAAATATCCAGACCCCAAGTTAAGGAAAAAGAATAAACGCATTGGAACCTTTGATGATAATCTTAAGAAACTTGTAGATGAAATGTTCGACGTAATGTACAAAACTGATGGTATTGGTCTTTCAGCACCCCAAGTAGGAATTAATGTTCAACTTATGGTTTTCAATCCGGTAGGCGAACGTGGTGAAGGAGAAGAAATTGTTCTTGTAAACCCAAGAGTTAGTAAATACTCAATGAACCGAACACTCTTCAATGAGGGTTGTCTATCTTTCCCCGGCATTAATGCTGACGTAAAGAGACCAGAATCTGTGAAGATTGATGCACGTGATGTCAAGGGAACACGGTTTTCAGTCAGTTTGTCTGGCCTTCCAGCACGGATATTTCAACATGAATTTGACCATCTACAGGGAATCCTTTTCTTTGAGAGAATGACTGACGAAGTTCTTGATAGTATTCGTGGACAGTTACAGGCCCTTGAAATGAAGTATGAGGAAATGACTGGATTCCCAAGTCCTGAAAAGATAGAAAGTCGCAGAACAAGAAAGGTCCCTTCTGGTTTTGGGAAATCATGA

Protein sequence

>Msa1056790

MASLLPSHLLHHYHHHRCSALAAIPNRFFHLTLSSSSRTKSAFSASQNELASLGDLEFEAPLKIVKYPDPKLRKKNKRIGTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVSKYSMNRTLFNEGCLSFPGINADVKRPESVKIDARDVKGTRFSVSLSGLPARIFQHEFDHLQGILFFERMTDEVLDSIRGQLQALEMKYEEMTGFPSPEKIESRRTRKVPSGFGKS*