Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434200 | XP_003605651.1 | 93.548 | 186 | 11 | 1 | 1 | 185 | 1 | 186 | 4.21e-125 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434200 | sp|Q9FVV7|RD521_ARATH | 79.104 | 134 | 27 | 1 | 51 | 184 | 43 | 175 | 1.19e-78 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434200 | G7JRC9 | 93.548 | 186 | 11 | 1 | 1 | 185 | 1 | 186 | 2.01e-125 | 360 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1434200 | 0.839323 | 1.696878e-57 | -8.615850e-47 |
| Msa0028640 | Msa1434200 | 0.804833 | 1.786641e-49 | -8.615850e-47 |
| Msa0075220 | Msa1434200 | 0.802892 | 4.522483e-49 | -8.615850e-47 |
| Msa0110970 | Msa1434200 | 0.800428 | 1.448155e-48 | -8.615850e-47 |
| Msa1372760 | Msa1434200 | 0.811568 | 6.560824e-51 | -8.615850e-47 |
| Msa1434200 | Msa1459690 | 0.805529 | 1.277663e-49 | -8.615850e-47 |
| Msa1434200 | Msa1464810 | 0.800409 | 1.460697e-48 | -8.615850e-47 |
| Msa0657970 | Msa1434200 | 0.803325 | 3.679807e-49 | -8.615850e-47 |
| Msa0674580 | Msa1434200 | 0.937990 | 1.407164e-98 | -8.615850e-47 |
| Msa0157290 | Msa1434200 | 0.838874 | 2.219154e-57 | -8.615850e-47 |
| Msa0160550 | Msa1434200 | 0.804352 | 2.251285e-49 | -8.615850e-47 |
| Msa0200260 | Msa1434200 | 0.813890 | 2.035506e-51 | -8.615850e-47 |
| Msa1283860 | Msa1434200 | 0.822601 | 2.171473e-53 | -8.615850e-47 |
| Msa1284550 | Msa1434200 | 0.802232 | 6.184692e-49 | -8.615850e-47 |
| Msa0398710 | Msa1434200 | 0.809042 | 2.300922e-50 | -8.615850e-47 |
| Msa0410650 | Msa1434200 | 0.819044 | 1.428174e-52 | -8.615850e-47 |
| Msa0428590 | Msa1434200 | 0.806915 | 6.521688e-50 | -8.615850e-47 |
| Msa0993290 | Msa1434200 | 0.812393 | 4.337318e-51 | -8.615850e-47 |
| Msa0993600 | Msa1434200 | 0.811190 | 7.924306e-51 | -8.615850e-47 |
| Msa1082500 | Msa1434200 | 0.800114 | 1.677136e-48 | -8.615850e-47 |
| Msa1085200 | Msa1434200 | 0.820331 | 7.259300e-53 | -8.615850e-47 |
| Msa0243100 | Msa1434200 | 0.813701 | 2.240823e-51 | -8.615850e-47 |
| Msa0244860 | Msa1434200 | 0.801784 | 7.646892e-49 | -8.615850e-47 |
| Msa1121440 | Msa1434200 | 0.800023 | 1.750138e-48 | -8.615850e-47 |
| Msa1189070 | Msa1434200 | 0.802328 | 5.911533e-49 | -8.615850e-47 |
| Msa1209460 | Msa1434200 | 0.813546 | 2.423197e-51 | -8.615850e-47 |
| Msa0507680 | Msa1434200 | 0.816412 | 5.604976e-52 | -8.615850e-47 |
| Msa0523460 | Msa1434200 | 0.806223 | 9.132271e-50 | -8.615850e-47 |
| Msa0569200 | Msa1434200 | 0.805471 | 1.313915e-49 | -8.615850e-47 |
| Msa0602240 | Msa1434200 | 0.802415 | 5.672072e-49 | -8.615850e-47 |
| Msa0602250 | Msa1434200 | 0.805237 | 1.470789e-49 | -8.615850e-47 |
| Msa0861870 | Msa1434200 | 0.808816 | 2.572246e-50 | -8.615850e-47 |
| Msa0880140 | Msa1434200 | 0.834958 | 2.217410e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434200 | MtrunA17_Chr4g0017421 | 93.548 | 186 | 11 | 1 | 1 | 185 | 1 | 186 | 3.87e-129 | 360 |
| Msa1434200 | MtrunA17_Chr6g0449001 | 50.000 | 130 | 62 | 2 | 58 | 185 | 81 | 209 | 1.18e-39 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434200 | AT1G71310.2 | 79.104 | 134 | 27 | 1 | 51 | 184 | 43 | 175 | 1.21e-79 | 234 |
| Msa1434200 | AT1G71310.1 | 79.104 | 134 | 27 | 1 | 51 | 184 | 43 | 175 | 1.21e-79 | 234 |
| Msa1434200 | AT1G71310.3 | 74.444 | 90 | 22 | 1 | 51 | 140 | 43 | 131 | 1.63e-47 | 153 |
| Msa1434200 | AT5G47870.1 | 52.985 | 134 | 52 | 3 | 55 | 182 | 71 | 199 | 4.33e-43 | 142 |
Find 41 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTATTTCTCTAGATATTT+AGG | 0.082156 | tig0027488:+28617 | Msa1434200:intron |
| GTTTACCGAGTTACTCTTTA+TGG | 0.205215 | tig0027488:+26245 | Msa1434200:CDS |
| GATATGAAACAGTTAAATTA+TGG | 0.240393 | tig0027488:+29059 | Msa1434200:three_prime_UTR |
| ATTATTTCTCTAGATATTTA+GGG | 0.255978 | tig0027488:+28618 | Msa1434200:intron |
| AGCTTGCGCACGCTTTGGAC+TGG | 0.266868 | tig0027488:+28720 | Msa1434200:CDS |
| TCAACAGATGATACAAATTA+TGG | 0.311066 | tig0027488:+28658 | Msa1434200:CDS |
| TCATTTCGTTTCCTACTAGA+TGG | 0.325041 | tig0027488:-28987 | None:intergenic |
| GCTTGCGCACGCTTTGGACT+GGG | 0.330431 | tig0027488:+28721 | Msa1434200:CDS |
| ATGGTTAGTTACCACTTAAA+AGG | 0.340122 | tig0027488:+28860 | Msa1434200:three_prime_UTR |
| TTCTCTGTTTGGTTCATGAT+AGG | 0.341734 | tig0027488:+28926 | Msa1434200:three_prime_UTR |
| ATGACGCTTCTTCATGATAA+AGG | 0.341813 | tig0027488:-28750 | None:intergenic |
| TGGTTCATGATAGGACATTA+AGG | 0.344878 | tig0027488:+28935 | Msa1434200:three_prime_UTR |
| GTTGTAGTTATCTGACTCTA+TGG | 0.353068 | tig0027488:+29015 | Msa1434200:three_prime_UTR |
| GATGGACGTAAGCAACAAAA+TGG | 0.355547 | tig0027488:-28969 | None:intergenic |
| CGAAGAGCTTGCGCACGCTT+TGG | 0.355572 | tig0027488:+28715 | Msa1434200:CDS |
| GCAGATGATGTACCGACTTC+AGG | 0.367871 | tig0027488:+24960 | Msa1434200:CDS |
| TTTACCGAGTTACTCTTTAT+GGG | 0.370557 | tig0027488:+26246 | Msa1434200:CDS |
| TTTCAGAGTAACGTAATCAT+AGG | 0.380196 | tig0027488:-28828 | None:intergenic |
| TTCATATTCGATACATTCCT+TGG | 0.402001 | tig0027488:+25072 | Msa1434200:CDS |
| ATTGCTTCTGCCTTCTGTAC+AGG | 0.413988 | tig0027488:-28685 | None:intergenic |
| AAAACTCGTGTTGAGAAAGA+TGG | 0.424041 | tig0027488:+25047 | Msa1434200:CDS |
| GTAAACAACAGAAACAGATT+TGG | 0.429859 | tig0027488:-26228 | None:intergenic |
| GTTGCTTACGTCCATCTAGT+AGG | 0.451835 | tig0027488:+28976 | Msa1434200:three_prime_UTR |
| AGATTTGGCATCAGCAGAAT+AGG | 0.453804 | tig0027488:-26213 | None:intergenic |
| CTTGCGCACGCTTTGGACTG+GGG | 0.493438 | tig0027488:+28722 | Msa1434200:CDS |
| TAGAGTGGTCTGGTGAGGTT+CGG | 0.494657 | tig0027488:+26183 | Msa1434200:intron |
| AAACTCGTGTTGAGAAAGAT+GGG | 0.521709 | tig0027488:+25048 | Msa1434200:CDS |
| TAGATATTTAGGGAATCAAC+TGG | 0.527816 | tig0027488:+28628 | Msa1434200:intron |
| TACTCTGAAACAAGATCGTA+TGG | 0.546972 | tig0027488:+28841 | Msa1434200:three_prime_UTR |
| TCTTTCAGTATTTCAGACAA+AGG | 0.552005 | tig0027488:-24993 | None:intergenic |
| TTTGCTAGAGTGGTCTGGTG+AGG | 0.565278 | tig0027488:+26178 | Msa1434200:intron |
| TCATATCAAAAGACATACAA+TGG | 0.572361 | tig0027488:-29043 | None:intergenic |
| TTATGGAGATCCTGTACAGA+AGG | 0.579974 | tig0027488:+28675 | Msa1434200:CDS |
| GTGTTGAACTTACACGCCCC+AGG | 0.580269 | tig0027488:+26066 | Msa1434200:CDS |
| TGTACAGAAGGCAGAAGCAA+TGG | 0.585197 | tig0027488:+28687 | Msa1434200:CDS |
| CAGTCCCATAAAGAGTAACT+CGG | 0.599594 | tig0027488:-26250 | None:intergenic |
| AGTAGGAAACGAAATGACTT+CGG | 0.620522 | tig0027488:+28993 | Msa1434200:three_prime_UTR |
| TCTTTATGGGACTGATGCTG+AGG | 0.623906 | tig0027488:+26259 | Msa1434200:CDS |
| ACGCTTCTTCATGATAAAGG+TGG | 0.638320 | tig0027488:-28747 | None:intergenic |
| GGTCTACAGATTCCTGAAGT+CGG | 0.641126 | tig0027488:-24972 | None:intergenic |
| GGGCGTGTAAGTTCAACACG+CGG | 0.764490 | tig0027488:-26062 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGATATTTTTTATAAAAC+AGG | - | tig0027488:27149-27168 | None:intergenic | 10.0% |
| !! | TAGTTTATTAATTAAGTTTA+AGG | - | tig0027488:27856-27875 | None:intergenic | 10.0% |
| !! | GATAATAAAGTAGTTTATTA+GGG | - | tig0027488:25117-25136 | None:intergenic | 15.0% |
| !! | AATAGCAAAATTAATCAAAA+GGG | - | tig0027488:26122-26141 | None:intergenic | 15.0% |
| !! | AAATAGCAAAATTAATCAAA+AGG | - | tig0027488:26123-26142 | None:intergenic | 15.0% |
| !! | TAATGATTTACTTAGAATTT+GGG | - | tig0027488:26471-26490 | None:intergenic | 15.0% |
| !! | ATAATGATTTACTTAGAATT+TGG | - | tig0027488:26472-26491 | None:intergenic | 15.0% |
| !! | TACGAACAAAAAAAATTAAA+AGG | - | tig0027488:26495-26514 | None:intergenic | 15.0% |
| !!! | ATTTTCAAATGACTAAATAT+AGG | + | tig0027488:27311-27330 | Msa1434200:intron | 15.0% |
| !! | TTTGAAAATTGAAAAAACTT+AGG | - | tig0027488:27492-27511 | None:intergenic | 15.0% |
| !!! | TTTTCAATTTTCAAATTACT+AGG | + | tig0027488:27497-27516 | Msa1434200:intron | 15.0% |
| !!! | TTTCAATTTTCAAATTACTA+GGG | + | tig0027488:27498-27517 | Msa1434200:intron | 15.0% |
| !! | AACTTAATTAATAAACTAGA+TGG | + | tig0027488:27858-27877 | Msa1434200:intron | 15.0% |
| !!! | ATTATTTCTCTAGATATTTA+GGG | + | tig0027488:28618-28637 | Msa1434200:intron | 15.0% |
| !! | GGATAATAAAGTAGTTTATT+AGG | - | tig0027488:25118-25137 | None:intergenic | 20.0% |
| !!! | AAAAGTTTTTCAAATTCGTA+GGG | - | tig0027488:25241-25260 | None:intergenic | 20.0% |
| !!! | AAAAAGTTTTTCAAATTCGT+AGG | - | tig0027488:25242-25261 | None:intergenic | 20.0% |
| !!! | ACGAATTTGAAAAACTTTTT+TGG | + | tig0027488:25242-25261 | Msa1434200:intron | 20.0% |
| !! | AAATAGGCTGAATAAAAATT+TGG | + | tig0027488:25318-25337 | Msa1434200:intron | 20.0% |
| !! | AATAGGCTGAATAAAAATTT+GGG | + | tig0027488:25319-25338 | Msa1434200:intron | 20.0% |
| !! | TTATAGAGTTTAACATATAC+TGG | - | tig0027488:26394-26413 | None:intergenic | 20.0% |
| !! | AATTTACTTAGAAAATGTGT+GGG | + | tig0027488:26430-26449 | Msa1434200:intron | 20.0% |
| !!! | TATTTTTATTTCTCCCTTTA+AGG | + | tig0027488:26522-26541 | Msa1434200:intron | 20.0% |
| !!! | TTTTTGAGACTATAAAATGT+TGG | - | tig0027488:26675-26694 | None:intergenic | 20.0% |
| !! | TATTTACTACTTATATGTCT+CGG | + | tig0027488:26720-26739 | Msa1434200:intron | 20.0% |
| !!! | ATTGATAATTACTGTGATAT+TGG | + | tig0027488:26921-26940 | Msa1434200:intron | 20.0% |
| !!! | AAATATAGGTGCATTATTTT+TGG | + | tig0027488:27325-27344 | Msa1434200:intron | 20.0% |
| !!! | AATATAGGTGCATTATTTTT+GGG | + | tig0027488:27326-27345 | Msa1434200:intron | 20.0% |
| !!! | TTCAATTTTCAAATTACTAG+GGG | + | tig0027488:27499-27518 | Msa1434200:intron | 20.0% |
| !!! | AGGCATATAAATGAAAATTT+TGG | - | tig0027488:28371-28390 | None:intergenic | 20.0% |
| !! | ATGTAGATATAATATAGCTA+CGG | + | tig0027488:28495-28514 | Msa1434200:intron | 20.0% |
| !! | CTAAATATCTAGAGAAATAA+TGG | - | tig0027488:28619-28638 | None:intergenic | 20.0% |
| !!! | CATTATTTCTCTAGATATTT+AGG | + | tig0027488:28617-28636 | Msa1434200:intron | 20.0% |
| !! | TAAATGCCAAAAATATACAA+TGG | - | tig0027488:28807-28826 | None:intergenic | 20.0% |
| !! | GATATGAAACAGTTAAATTA+TGG | + | tig0027488:29059-29078 | Msa1434200:three_prime_UTR | 20.0% |
| !!! | ATTTTTGATGAAGTGTCAAA+CGG | - | tig0027488:24795-24814 | None:intergenic | 25.0% |
| !! | TCTCAGATTATTCAGTTTTA+GGG | - | tig0027488:24844-24863 | None:intergenic | 25.0% |
| !! | TTCTCAGATTATTCAGTTTT+AGG | - | tig0027488:24845-24864 | None:intergenic | 25.0% |
| ! | AAAGTAGTTTATTAGGGTTA+GGG | - | tig0027488:25111-25130 | None:intergenic | 25.0% |
| ! | TAAAGTAGTTTATTAGGGTT+AGG | - | tig0027488:25112-25131 | None:intergenic | 25.0% |
| ! | AATGTTATTACAAGAATACG+AGG | - | tig0027488:25139-25158 | None:intergenic | 25.0% |
| !! | TAACCAGTTTAGTAATTTGT+TGG | + | tig0027488:25268-25287 | Msa1434200:intron | 25.0% |
| ! | TTTGGATAAACGACTTAAAT+AGG | + | tig0027488:25302-25321 | Msa1434200:intron | 25.0% |
| ! | CCCAATATACTTATTTATTG+CGG | - | tig0027488:25468-25487 | None:intergenic | 25.0% |
| ! | CCGCAATAAATAAGTATATT+GGG | + | tig0027488:25465-25484 | Msa1434200:intron | 25.0% |
| ! | CGCAATAAATAAGTATATTG+GGG | + | tig0027488:25466-25485 | Msa1434200:intron | 25.0% |
| ! | GCAATAAATAAGTATATTGG+GGG | + | tig0027488:25467-25486 | Msa1434200:intron | 25.0% |
| ! | CAATAAATAAGTATATTGGG+GGG | + | tig0027488:25468-25487 | Msa1434200:intron | 25.0% |
| ! | TTGACTAACATAATACAATC+AGG | + | tig0027488:25535-25554 | Msa1434200:intron | 25.0% |
| ! | TGACTAACATAATACAATCA+GGG | + | tig0027488:25536-25555 | Msa1434200:intron | 25.0% |
| !! | GACTTATTTGAGTTTATCTT+TGG | + | tig0027488:25682-25701 | Msa1434200:intron | 25.0% |
| !!! | ATGACATAAGCTATTTCTAT+AGG | + | tig0027488:25747-25766 | Msa1434200:intron | 25.0% |
| !! | ACAATTTTCGTAAGTTATCT+TGG | - | tig0027488:25777-25796 | None:intergenic | 25.0% |
| !!! | TATTTGAGTTTAGCTTTGTT+TGG | - | tig0027488:25917-25936 | None:intergenic | 25.0% |
| ! | ACAACATTCATAATAACAGA+GGG | - | tig0027488:26025-26044 | None:intergenic | 25.0% |
| ! | AACAACATTCATAATAACAG+AGG | - | tig0027488:26026-26045 | None:intergenic | 25.0% |
| ! | TCGGACAAAAATACAAATAT+GGG | - | tig0027488:26363-26382 | None:intergenic | 25.0% |
| ! | ACATATACTGGTAAATATCT+CGG | - | tig0027488:26382-26401 | None:intergenic | 25.0% |
| ! | GAATTTACTTAGAAAATGTG+TGG | + | tig0027488:26429-26448 | Msa1434200:intron | 25.0% |
| ! | ATTTACTTAGAAAATGTGTG+GGG | + | tig0027488:26431-26450 | Msa1434200:intron | 25.0% |
| ! | ACGAAAACATAAACCTTAAA+GGG | - | tig0027488:26538-26557 | None:intergenic | 25.0% |
| ! | TTTGAAAATTACAGTCAAGA+TGG | - | tig0027488:27300-27319 | None:intergenic | 25.0% |
| ! | TTTGAGAAAATTATTGCTTG+AGG | + | tig0027488:27402-27421 | Msa1434200:intron | 25.0% |
| !!! | GTTATGTGTATTTTAAGTGA+AGG | + | tig0027488:27437-27456 | Msa1434200:intron | 25.0% |
| ! | TTATTAGTGTGTGTTTAGAT+GGG | - | tig0027488:27786-27805 | None:intergenic | 25.0% |
| ! | TTTATTAGTGTGTGTTTAGA+TGG | - | tig0027488:27787-27806 | None:intergenic | 25.0% |
| ! | AATCAAAGATTCAATGTGTT+AGG | - | tig0027488:27888-27907 | None:intergenic | 25.0% |
| !! | GATTTTGTTCTATATACTGA+TGG | - | tig0027488:28047-28066 | None:intergenic | 25.0% |
| ! | TCAACAGATGATACAAATTA+TGG | + | tig0027488:28658-28677 | Msa1434200:CDS | 25.0% |
| !! | TAACTGCCATTGTATATTTT+TGG | + | tig0027488:28798-28817 | Msa1434200:three_prime_UTR | 25.0% |
| ! | TCATATCAAAAGACATACAA+TGG | - | tig0027488:29046-29065 | None:intergenic | 25.0% |
| GTTTGACACTTCATCAAAAA+TGG | + | tig0027488:24794-24813 | Msa1434200:exon | 30.0% | |
| !!! | ATTATTCAGTTTTAGGGTAG+AGG | - | tig0027488:24838-24857 | None:intergenic | 30.0% |
| ! | TCGATTTTGCTTCAGAAAAT+AGG | - | tig0027488:24877-24896 | None:intergenic | 30.0% |
| !! | ATAATGATGATGCTTTTGCA+TGG | - | tig0027488:24917-24936 | None:intergenic | 30.0% |
| TCTTTCAGTATTTCAGACAA+AGG | - | tig0027488:24996-25015 | None:intergenic | 30.0% | |
| TTCATATTCGATACATTCCT+TGG | + | tig0027488:25072-25091 | Msa1434200:CDS | 30.0% | |
| AAATTCGTAGGGACTAAAAA+GGG | - | tig0027488:25230-25249 | None:intergenic | 30.0% | |
| !! | TTTAGTAATTTGTTGGACCT+AGG | + | tig0027488:25275-25294 | Msa1434200:intron | 30.0% |
| ACTAACATAATGCATAGTCA+GGG | - | tig0027488:25421-25440 | None:intergenic | 30.0% | |
| GCCGCAATAAATAAGTATAT+TGG | + | tig0027488:25464-25483 | Msa1434200:intron | 30.0% | |
| TTGACTAACATAATGCAATC+AGG | + | tig0027488:25565-25584 | Msa1434200:intron | 30.0% | |
| TGACTAACATAATGCAATCA+GGG | + | tig0027488:25566-25585 | Msa1434200:intron | 30.0% | |
| ! | TATAGAAGCAACTTTTACAG+AGG | + | tig0027488:25841-25860 | Msa1434200:intron | 30.0% |
| GACTCTTAAAAGTAGATACA+TGG | + | tig0027488:25951-25970 | Msa1434200:intron | 30.0% | |
| GTTATTATGAATGTTGTTGC+AGG | + | tig0027488:26028-26047 | Msa1434200:intron | 30.0% | |
| GTAAACAACAGAAACAGATT+TGG | - | tig0027488:26231-26250 | None:intergenic | 30.0% | |
| TTTACCGAGTTACTCTTTAT+GGG | + | tig0027488:26246-26265 | Msa1434200:CDS | 30.0% | |
| GGACAAAAATACAAATATGG+GGG | - | tig0027488:26361-26380 | None:intergenic | 30.0% | |
| CGGACAAAAATACAAATATG+GGG | - | tig0027488:26362-26381 | None:intergenic | 30.0% | |
| CTCGGACAAAAATACAAATA+TGG | - | tig0027488:26364-26383 | None:intergenic | 30.0% | |
| GATTTACTTAGAATTTGGGT+TGG | - | tig0027488:26467-26486 | None:intergenic | 30.0% | |
| GACGAAAACATAAACCTTAA+AGG | - | tig0027488:26539-26558 | None:intergenic | 30.0% | |
| ! | GTTGGTGAGTTTATTATAGA+TGG | - | tig0027488:26657-26676 | None:intergenic | 30.0% |
| TTCCTTTCATCTAATCTACA+GGG | - | tig0027488:26843-26862 | None:intergenic | 30.0% | |
| TTTCCTTTCATCTAATCTAC+AGG | - | tig0027488:26844-26863 | None:intergenic | 30.0% | |
| AGATGAAAGGAAAATTAGAG+AGG | + | tig0027488:26851-26870 | Msa1434200:intron | 30.0% | |
| GATGAAAGGAAAATTAGAGA+GGG | + | tig0027488:26852-26871 | Msa1434200:intron | 30.0% | |
| ATCCTTGCATTCTTGAAAAT+AGG | + | tig0027488:27200-27219 | Msa1434200:intron | 30.0% | |
| ATTCTTGAAAATAGGTCTCT+TGG | + | tig0027488:27208-27227 | Msa1434200:intron | 30.0% | |
| ATTATTGCTTGAGGAAATCA+TGG | + | tig0027488:27411-27430 | Msa1434200:intron | 30.0% | |
| TTATTGCTTGAGGAAATCAT+GGG | + | tig0027488:27412-27431 | Msa1434200:intron | 30.0% | |
| GAAAAGAAATTCTGTACTTG+AGG | + | tig0027488:27525-27544 | Msa1434200:intron | 30.0% | |
| TTCTGTACTTGAGGTATAAA+AGG | + | tig0027488:27534-27553 | Msa1434200:intron | 30.0% | |
| !! | AAGGAATTTTTCAAAGCTCT+CGG | + | tig0027488:27553-27572 | Msa1434200:intron | 30.0% |
| !! | AGCTCTCGGTTTTATATATT+AGG | + | tig0027488:27567-27586 | Msa1434200:intron | 30.0% |
| ! | AAATAGCAGAAGCTATTTCA+AGG | - | tig0027488:27725-27744 | None:intergenic | 30.0% |
| TATTAGTGTGTGTTTAGATG+GGG | - | tig0027488:27785-27804 | None:intergenic | 30.0% | |
| ! | CTTTTAACCAACACAATACT+AGG | - | tig0027488:27966-27985 | None:intergenic | 30.0% |
| !! | CTAGTATTGTGTTGGTTAAA+AGG | + | tig0027488:27964-27983 | Msa1434200:intron | 30.0% |
| ! | TTGTTATTGTGTCTAGAAAG+TGG | - | tig0027488:28012-28031 | None:intergenic | 30.0% |
| CAGTATATAGAACAAAATCC+TGG | + | tig0027488:28048-28067 | Msa1434200:intron | 30.0% | |
| !! | TGATTGTTGATTCACTTTCT+TGG | - | tig0027488:28213-28232 | None:intergenic | 30.0% |
| TTGAGTCAGAAAATGAAACA+AGG | + | tig0027488:28521-28540 | Msa1434200:intron | 30.0% | |
| TAGATATTTAGGGAATCAAC+TGG | + | tig0027488:28628-28647 | Msa1434200:intron | 30.0% | |
| TTTCAGAGTAACGTAATCAT+AGG | - | tig0027488:28831-28850 | None:intergenic | 30.0% | |
| ! | ATGGTTAGTTACCACTTAAA+AGG | + | tig0027488:28860-28879 | Msa1434200:three_prime_UTR | 30.0% |
| ! | ACAAAATGCTACCTTTTAAG+TGG | - | tig0027488:28874-28893 | None:intergenic | 30.0% |
| !!! | TCTTTTTTGAGTTCTCTGTT+TGG | + | tig0027488:28915-28934 | Msa1434200:three_prime_UTR | 30.0% |
| !! | ATCAGCAGATTTTGAGAAAG+TGG | + | tig0027488:24938-24957 | Msa1434200:CDS | 35.0% |
| !! | CGAGTTTTAACAAGAGAATC+AGG | - | tig0027488:25035-25054 | None:intergenic | 35.0% |
| AAAACTCGTGTTGAGAAAGA+TGG | + | tig0027488:25047-25066 | Msa1434200:CDS | 35.0% | |
| AAACTCGTGTTGAGAAAGAT+GGG | + | tig0027488:25048-25067 | Msa1434200:CDS | 35.0% | |
| GTTTATTAGGGTTAGGGTTA+AGG | - | tig0027488:25105-25124 | None:intergenic | 35.0% | |
| CAAATTCGTAGGGACTAAAA+AGG | - | tig0027488:25231-25250 | None:intergenic | 35.0% | |
| GGTCCAACAAATTACTAAAC+TGG | - | tig0027488:25274-25293 | None:intergenic | 35.0% | |
| GACTAACATAATGCATAGTC+AGG | - | tig0027488:25422-25441 | None:intergenic | 35.0% | |
| AACATAGTCCCTAACGTAAT+AGG | + | tig0027488:25442-25461 | Msa1434200:intron | 35.0% | |
| ! | AATGCAATCAGGGACTATTT+TGG | + | tig0027488:25576-25595 | Msa1434200:intron | 35.0% |
| ! | TAAATAGTCCTTTTCGTAGC+TGG | - | tig0027488:25646-25665 | None:intergenic | 35.0% |
| GGACTATTTACGCAAATGTT+TGG | + | tig0027488:25656-25675 | Msa1434200:intron | 35.0% | |
| !! | CTGTTTTTCTTTTGCTAGAG+TGG | + | tig0027488:26168-26187 | Msa1434200:intron | 35.0% |
| GTTTACCGAGTTACTCTTTA+TGG | + | tig0027488:26245-26264 | Msa1434200:CDS | 35.0% | |
| ! | AAGTTTTCCGTTAATGCACT+TGG | + | tig0027488:26305-26324 | Msa1434200:intron | 35.0% |
| GATAACACCAAGTGCATTAA+CGG | - | tig0027488:26315-26334 | None:intergenic | 35.0% | |
| TCAGCACTAGAAATGAGAAT+TGG | - | tig0027488:26611-26630 | None:intergenic | 35.0% | |
| !! | AATTCTCATTTCTAGTGCTG+AGG | + | tig0027488:26610-26629 | Msa1434200:intron | 35.0% |
| TATATGTCTCGGTATGAGAT+TGG | + | tig0027488:26731-26750 | Msa1434200:intron | 35.0% | |
| ! | AAGACTGTCATTTAGTGAAG+CGG | - | tig0027488:26787-26806 | None:intergenic | 35.0% |
| GAATGAGATTTCAACTAAGG+GGG | - | tig0027488:26821-26840 | None:intergenic | 35.0% | |
| GGAATGAGATTTCAACTAAG+GGG | - | tig0027488:26822-26841 | None:intergenic | 35.0% | |
| GGGAATGAGATTTCAACTAA+GGG | - | tig0027488:26823-26842 | None:intergenic | 35.0% | |
| AGGGAATGAGATTTCAACTA+AGG | - | tig0027488:26824-26843 | None:intergenic | 35.0% | |
| TTCCCTGTAGATTAGATGAA+AGG | + | tig0027488:26838-26857 | Msa1434200:intron | 35.0% | |
| ACAGATACGGAGTAATGATT+CGG | - | tig0027488:27174-27193 | None:intergenic | 35.0% | |
| !! | GACCTATTTTCAAGAATGCA+AGG | - | tig0027488:27205-27224 | None:intergenic | 35.0% |
| TTAGGAGCAGAAGTTTAACT+TGG | + | tig0027488:27585-27604 | Msa1434200:intron | 35.0% | |
| ! | TAGGAGCAGAAGTTTAACTT+GGG | + | tig0027488:27586-27605 | Msa1434200:intron | 35.0% |
| CTTGATGTCTCTATCAAGAA+AGG | - | tig0027488:27617-27636 | None:intergenic | 35.0% | |
| ACTACTTATACGACGTTTGT+TGG | + | tig0027488:27809-27828 | Msa1434200:intron | 35.0% | |
| CTACTTATACGACGTTTGTT+GGG | + | tig0027488:27810-27829 | Msa1434200:intron | 35.0% | |
| CAAAGGTCAACACTATCAAA+AGG | - | tig0027488:27943-27962 | None:intergenic | 35.0% | |
| GCATGTTTACAATACTCCAA+GGG | - | tig0027488:28261-28280 | None:intergenic | 35.0% | |
| !! | ACATGCGAAAGTGTTTAACT+AGG | + | tig0027488:28275-28294 | Msa1434200:intron | 35.0% |
| AATATGCAAAAGCAATCTGC+AGG | - | tig0027488:28391-28410 | None:intergenic | 35.0% | |
| !!! | GCTATTGCTTTTGAAGTCTT+TGG | + | tig0027488:28453-28472 | Msa1434200:intron | 35.0% |
| AATCTGTAGACAGAAAGAAC+AGG | - | tig0027488:28564-28583 | None:intergenic | 35.0% | |
| ATGACGCTTCTTCATGATAA+AGG | - | tig0027488:28753-28772 | None:intergenic | 35.0% | |
| !!! | AACAAGCGTTTTTTCATGTC+TGG | + | tig0027488:28774-28793 | Msa1434200:exon | 35.0% |
| !! | TACTCTGAAACAAGATCGTA+TGG | + | tig0027488:28841-28860 | Msa1434200:three_prime_UTR | 35.0% |
| ! | TTCTCTGTTTGGTTCATGAT+AGG | + | tig0027488:28926-28945 | Msa1434200:three_prime_UTR | 35.0% |
| TGGTTCATGATAGGACATTA+AGG | + | tig0027488:28935-28954 | Msa1434200:three_prime_UTR | 35.0% | |
| TCATTTCGTTTCCTACTAGA+TGG | - | tig0027488:28990-29009 | None:intergenic | 35.0% | |
| AGTAGGAAACGAAATGACTT+CGG | + | tig0027488:28993-29012 | Msa1434200:three_prime_UTR | 35.0% | |
| GTTGTAGTTATCTGACTCTA+TGG | + | tig0027488:29015-29034 | Msa1434200:three_prime_UTR | 35.0% | |
| ! | TTCAACTGCTAGATGTTTTG+AGG | + | tig0027488:29082-29101 | Msa1434200:three_prime_UTR | 35.0% |
| !!! | GATGTTTTGAGGAGAATTGA+TGG | + | tig0027488:29093-29112 | Msa1434200:three_prime_UTR | 35.0% |
| !! | AGGGTTAAGGAAAAGTACCA+AGG | - | tig0027488:25092-25111 | None:intergenic | 40.0% |
| TCGTTTATCCAAACAAGCCT+AGG | - | tig0027488:25295-25314 | None:intergenic | 40.0% | |
| TATTGCGGCCTATTACGTTA+GGG | - | tig0027488:25453-25472 | None:intergenic | 40.0% | |
| TTATTGCGGCCTATTACGTT+AGG | - | tig0027488:25454-25473 | None:intergenic | 40.0% | |
| TTTCGTAGCTGGATGTGTTA+CGG | - | tig0027488:25635-25654 | None:intergenic | 40.0% | |
| TAACACATCCAGCTACGAAA+AGG | + | tig0027488:25635-25654 | Msa1434200:intron | 40.0% | |
| ACGTGTGTGTGTATATACCT+GGG | - | tig0027488:26086-26105 | None:intergenic | 40.0% | |
| TACGTGTGTGTGTATATACC+TGG | - | tig0027488:26087-26106 | None:intergenic | 40.0% | |
| ! | TTTCTTTTGCTAGAGTGGTC+TGG | + | tig0027488:26173-26192 | Msa1434200:intron | 40.0% |
| AGATTTGGCATCAGCAGAAT+AGG | - | tig0027488:26216-26235 | None:intergenic | 40.0% | |
| CAGTCCCATAAAGAGTAACT+CGG | - | tig0027488:26253-26272 | None:intergenic | 40.0% | |
| !! | GGCTGTCTTTGATTTTGAAG+AGG | + | tig0027488:26873-26892 | Msa1434200:intron | 40.0% |
| CAGATACGGAGTAATGATTC+GGG | - | tig0027488:27173-27192 | None:intergenic | 40.0% | |
| TCATTACTCCGTATCTGTAC+TGG | + | tig0027488:27176-27195 | Msa1434200:intron | 40.0% | |
| CAAGGATACCAGTACAGATA+CGG | - | tig0027488:27187-27206 | None:intergenic | 40.0% | |
| ACAGTCAAGATGGTAGATAC+TGG | - | tig0027488:27290-27309 | None:intergenic | 40.0% | |
| AGCAATTAGAACTACCGATG+AGG | + | tig0027488:27680-27699 | Msa1434200:intron | 40.0% | |
| ! | TAGAACTACCGATGAGGTTT+TGG | + | tig0027488:27686-27705 | Msa1434200:intron | 40.0% |
| ACCTTTGCCTAGTATTGTGT+TGG | + | tig0027488:27956-27975 | Msa1434200:intron | 40.0% | |
| ACCAACACAATACTAGGCAA+AGG | - | tig0027488:27960-27979 | None:intergenic | 40.0% | |
| TATATACTGATGGCTCGTGA+AGG | - | tig0027488:28037-28056 | None:intergenic | 40.0% | |
| ! | TGTGTCTAGTTCAACTTTCC+AGG | - | tig0027488:28069-28088 | None:intergenic | 40.0% |
| ! | AGTCAGCTGTGTGACTTTTA+AGG | + | tig0027488:28114-28133 | Msa1434200:intron | 40.0% |
| CGCATGTTTACAATACTCCA+AGG | - | tig0027488:28262-28281 | None:intergenic | 40.0% | |
| TTGTTCAGCTTTCTTGACAG+TGG | + | tig0027488:28305-28324 | Msa1434200:intron | 40.0% | |
| TTATGGAGATCCTGTACAGA+AGG | + | tig0027488:28675-28694 | Msa1434200:CDS | 40.0% | |
| ACGCTTCTTCATGATAAAGG+TGG | - | tig0027488:28750-28769 | None:intergenic | 40.0% | |
| GATGGACGTAAGCAACAAAA+TGG | - | tig0027488:28972-28991 | None:intergenic | 40.0% | |
| GGTCTACAGATTCCTGAAGT+CGG | - | tig0027488:24975-24994 | None:intergenic | 45.0% | |
| ! | TTGTTGGACCTAGGCTTGTT+TGG | + | tig0027488:25284-25303 | Msa1434200:intron | 45.0% |
| TGCATAGTCAGGGACTATCT+TGG | - | tig0027488:25411-25430 | None:intergenic | 45.0% | |
| TTCGTAGCTGGATGTGTTAC+GGG | - | tig0027488:25634-25653 | None:intergenic | 45.0% | |
| CGTGTGTGTGTATATACCTG+GGG | - | tig0027488:26085-26104 | None:intergenic | 45.0% | |
| TCTTTATGGGACTGATGCTG+AGG | + | tig0027488:26259-26278 | Msa1434200:CDS | 45.0% | |
| CTGCAGAACCAAAACCTCAT+CGG | - | tig0027488:27697-27716 | None:intergenic | 45.0% | |
| GTTTAGATGGGGAATGGAAG+AGG | - | tig0027488:27774-27793 | None:intergenic | 45.0% | |
| GTGTGTGTTTAGATGGGGAA+TGG | - | tig0027488:27780-27799 | None:intergenic | 45.0% | |
| AATCTTGCTAGCTATGCCCT+TGG | + | tig0027488:28242-28261 | Msa1434200:intron | 45.0% | |
| ATTGCTTCTGCCTTCTGTAC+AGG | - | tig0027488:28688-28707 | None:intergenic | 45.0% | |
| TGTACAGAAGGCAGAAGCAA+TGG | + | tig0027488:28687-28706 | Msa1434200:CDS | 45.0% | |
| GTTGCTTACGTCCATCTAGT+AGG | + | tig0027488:28976-28995 | Msa1434200:three_prime_UTR | 45.0% | |
| !! | GCAGATGATGTACCGACTTC+AGG | + | tig0027488:24960-24979 | Msa1434200:CDS | 50.0% |
| TTTGCTAGAGTGGTCTGGTG+AGG | + | tig0027488:26178-26197 | Msa1434200:intron | 50.0% | |
| TAGAGTGGTCTGGTGAGGTT+CGG | + | tig0027488:26183-26202 | Msa1434200:intron | 50.0% | |
| ! | GTCTCGGTATGAGATTGGTC+TGG | + | tig0027488:26736-26755 | Msa1434200:intron | 50.0% |
| GGGCGTGTAAGTTCAACACG+CGG | - | tig0027488:26065-26084 | None:intergenic | 55.0% | |
| GTGTTGAACTTACACGCCCC+AGG | + | tig0027488:26066-26085 | Msa1434200:CDS | 55.0% | |
| CGAAGAGCTTGCGCACGCTT+TGG | + | tig0027488:28715-28734 | Msa1434200:CDS | 60.0% | |
| ! | AGCTTGCGCACGCTTTGGAC+TGG | + | tig0027488:28720-28739 | Msa1434200:CDS | 60.0% |
| ! | GCTTGCGCACGCTTTGGACT+GGG | + | tig0027488:28721-28740 | Msa1434200:CDS | 60.0% |
| ! | CTTGCGCACGCTTTGGACTG+GGG | + | tig0027488:28722-28741 | Msa1434200:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027488 | gene | 24786 | 29122 | 24786 | ID=Msa1434200;Name=Msa1434200 |
| tig0027488 | mRNA | 24786 | 29122 | 24786 | ID=Msa1434200-mRNA-1;Parent=Msa1434200;Name=Msa1434200-mRNA-1;_AED=0.01;_eAED=0.01;_QI=27|1|1|1|1|1|4|348|185 |
| tig0027488 | exon | 24786 | 25093 | 24786 | ID=Msa1434200-mRNA-1:exon:9026;Parent=Msa1434200-mRNA-1 |
| tig0027488 | exon | 26050 | 26087 | 26050 | ID=Msa1434200-mRNA-1:exon:9027;Parent=Msa1434200-mRNA-1 |
| tig0027488 | exon | 26186 | 26280 | 26186 | ID=Msa1434200-mRNA-1:exon:9028;Parent=Msa1434200-mRNA-1 |
| tig0027488 | exon | 28631 | 29122 | 28631 | ID=Msa1434200-mRNA-1:exon:9029;Parent=Msa1434200-mRNA-1 |
| tig0027488 | five_prime_UTR | 24786 | 24812 | 24786 | ID=Msa1434200-mRNA-1:five_prime_utr;Parent=Msa1434200-mRNA-1 |
| tig0027488 | CDS | 24813 | 25093 | 24813 | ID=Msa1434200-mRNA-1:cds;Parent=Msa1434200-mRNA-1 |
| tig0027488 | CDS | 26050 | 26087 | 26050 | ID=Msa1434200-mRNA-1:cds;Parent=Msa1434200-mRNA-1 |
| tig0027488 | CDS | 26186 | 26280 | 26186 | ID=Msa1434200-mRNA-1:cds;Parent=Msa1434200-mRNA-1 |
| tig0027488 | CDS | 28631 | 28774 | 28631 | ID=Msa1434200-mRNA-1:cds;Parent=Msa1434200-mRNA-1 |
| tig0027488 | three_prime_UTR | 28775 | 29122 | 28775 | ID=Msa1434200-mRNA-1:three_prime_utr;Parent=Msa1434200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
