Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459260 | KEH32916.1 | 92.328 | 378 | 9 | 1 | 39 | 396 | 2 | 379 | 0.0 | 705 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459260 | sp|Q9M2V1|NCA1_ARATH | 61.475 | 366 | 105 | 3 | 55 | 384 | 31 | 396 | 8.47e-155 | 445 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459260 | A0A072UUA0 | 92.328 | 378 | 9 | 1 | 39 | 396 | 2 | 379 | 0.0 | 705 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028950 | Msa1459260 | 0.817518 | 3.163268e-52 | -8.615850e-47 |
| Msa0042390 | Msa1459260 | 0.813236 | 2.834338e-51 | -8.615850e-47 |
| Msa0044320 | Msa1459260 | 0.805878 | 1.079330e-49 | -8.615850e-47 |
| Msa0066850 | Msa1459260 | 0.812492 | 4.126542e-51 | -8.615850e-47 |
| Msa0092390 | Msa1459260 | 0.801940 | 7.103124e-49 | -8.615850e-47 |
| Msa1405470 | Msa1459260 | 0.804935 | 1.701162e-49 | -8.615850e-47 |
| Msa1440180 | Msa1459260 | 0.807149 | 5.820005e-50 | -8.615850e-47 |
| Msa1449740 | Msa1459260 | 0.807212 | 5.643989e-50 | -8.615850e-47 |
| Msa0675790 | Msa1459260 | 0.812847 | 3.450715e-51 | -8.615850e-47 |
| Msa0130390 | Msa1459260 | 0.806606 | 7.582621e-50 | -8.615850e-47 |
| Msa0228080 | Msa1459260 | 0.804305 | 2.302682e-49 | -8.615850e-47 |
| Msa1238700 | Msa1459260 | 0.801382 | 9.244933e-49 | -8.615850e-47 |
| Msa1284390 | Msa1459260 | 0.813788 | 2.143664e-51 | -8.615850e-47 |
| Msa1309890 | Msa1459260 | 0.804648 | 1.952831e-49 | -8.615850e-47 |
| Msa0984860 | Msa1459260 | 0.821515 | 3.875574e-53 | -8.615850e-47 |
| Msa0985040 | Msa1459260 | 0.820532 | 6.527631e-53 | -8.615850e-47 |
| Msa0985430 | Msa1459260 | 0.806949 | 6.414813e-50 | -8.615850e-47 |
| Msa1047700 | Msa1459260 | 0.802815 | 4.689525e-49 | -8.615850e-47 |
| Msa1067920 | Msa1459260 | 0.801884 | 7.294060e-49 | -8.615850e-47 |
| Msa0311330 | Msa1459260 | 0.832422 | 9.539199e-56 | -8.615850e-47 |
| Msa1113210 | Msa1459260 | 0.807655 | 4.545200e-50 | -8.615850e-47 |
| Msa1117830 | Msa1459260 | 0.828614 | 8.152177e-55 | -8.615850e-47 |
| Msa1191390 | Msa1459260 | 0.811792 | 5.864891e-51 | -8.615850e-47 |
| Msa1192150 | Msa1459260 | 0.818998 | 1.462836e-52 | -8.615850e-47 |
| Msa1209790 | Msa1459260 | 0.801069 | 1.071467e-48 | -8.615850e-47 |
| Msa0534380 | Msa1459260 | 0.817389 | 3.383315e-52 | -8.615850e-47 |
| Msa0537290 | Msa1459260 | 0.803786 | 2.951527e-49 | -8.615850e-47 |
| Msa0549740 | Msa1459260 | 0.813293 | 2.754821e-51 | -8.615850e-47 |
| Msa0575460 | Msa1459260 | 0.801214 | 1.000896e-48 | -8.615850e-47 |
| Msa0883410 | Msa1459260 | 0.819530 | 1.106408e-52 | -8.615850e-47 |
| Msa0934830 | Msa1459260 | 0.808504 | 2.997896e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459260 | MtrunA17_Chr3g0080821 | 92.896 | 366 | 6 | 1 | 51 | 396 | 1 | 366 | 0.0 | 688 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459260 | AT3G54360.1 | 61.475 | 366 | 105 | 3 | 55 | 384 | 31 | 396 | 8.61e-156 | 445 |
| Msa1459260 | AT3G54360.2 | 61.475 | 366 | 105 | 3 | 55 | 384 | 31 | 396 | 8.61e-156 | 445 |
Find 100 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCATGTATATTGCGCTTTA+AGG | 0.157277 | tig0040164:-14242 | Msa1459260:CDS |
| TTCAACTTGTTCTTGTTTAT+CGG | 0.174396 | tig0040164:+10791 | Msa1459260:intergenic |
| AACATCACGGCGAACATTTA+AGG | 0.189458 | tig0040164:+12351 | Msa1459260:intergenic |
| TCCGTTTCGCTTAATAAAAT+TGG | 0.209504 | tig0040164:-12430 | Msa1459260:CDS |
| CAGCTCCTTCAGTACCTTAT+TGG | 0.211921 | tig0040164:-10498 | Msa1459260:three_prime_UTR |
| GAGAAATACAGTGAATAAAA+AGG | 0.264568 | tig0040164:+10558 | Msa1459260:intergenic |
| TGGTGACTATAACTTGTATT+TGG | 0.277482 | tig0040164:-10255 | Msa1459260:three_prime_UTR |
| TCTCTCCTACTAGAACTTTC+CGG | 0.289488 | tig0040164:-10537 | Msa1459260:three_prime_UTR |
| GTTCTTGTTTATCGGCCTTT+TGG | 0.296831 | tig0040164:+10799 | Msa1459260:intergenic |
| TAAATGTTTCTTTATGTGAT+TGG | 0.311694 | tig0040164:-10705 | Msa1459260:three_prime_UTR |
| GATTGGTCCTCTTAGTTGTA+TGG | 0.347050 | tig0040164:-14416 | Msa1459260:CDS |
| CAGTACCTTATTGGTGCATA+AGG | 0.355207 | tig0040164:-10489 | Msa1459260:three_prime_UTR |
| ACATAGGTTCAGTCTTGATT+TGG | 0.359386 | tig0040164:+13724 | Msa1459260:intergenic |
| TCAAGAAGCCATAGACTTGC+TGG | 0.365900 | tig0040164:-11131 | Msa1459260:CDS |
| TTTAAGGACTGTCCGTTATG+TGG | 0.380399 | tig0040164:-14226 | Msa1459260:CDS |
| TTAGAAACATTACTGTCATC+TGG | 0.393316 | tig0040164:+14562 | Msa1459260:intergenic |
| CAATTCAAATGTTTCATCTC+AGG | 0.394732 | tig0040164:-12320 | Msa1459260:intron |
| TTCACAACTTGGAGCAGTCT+TGG | 0.399825 | tig0040164:-13648 | Msa1459260:CDS |
| AAAGTTGCCAAAGGATGATA+TGG | 0.402202 | tig0040164:-12582 | Msa1459260:CDS |
| AAGAGATTCCAGCAAGTCTA+TGG | 0.406417 | tig0040164:+11123 | Msa1459260:intergenic |
| GTTGCCCTTATGCACCAATA+AGG | 0.420668 | tig0040164:+10484 | Msa1459260:intergenic |
| AGAACAAGGCACACATTTGC+TGG | 0.423636 | tig0040164:+14369 | Msa1459260:intergenic |
| GGTGATCTTAAATATTATGA+TGG | 0.426058 | tig0040164:-12409 | Msa1459260:CDS |
| TCTAGTCAAATGAGGTTTGA+AGG | 0.439020 | tig0040164:-10181 | Msa1459260:three_prime_UTR |
| TTAAGGACTGTCCGTTATGT+GGG | 0.440149 | tig0040164:-14225 | Msa1459260:CDS |
| TGGGTATGCTTGGTGACTGC+TGG | 0.442245 | tig0040164:-13628 | Msa1459260:intron |
| ATAACCTCCATATCATCCTT+TGG | 0.459438 | tig0040164:+12575 | Msa1459260:intergenic |
| GAGCCGGATGCTGATCTTCA+AGG | 0.462414 | tig0040164:-14184 | Msa1459260:CDS |
| AGTACCTTATTGGTGCATAA+GGG | 0.468990 | tig0040164:-10488 | Msa1459260:three_prime_UTR |
| TCACAACTTGGAGCAGTCTT+GGG | 0.474641 | tig0040164:-13647 | Msa1459260:CDS |
| GTAGTTGATCGCTTTATTGA+AGG | 0.475161 | tig0040164:-14160 | Msa1459260:CDS |
| TACTAGAACTTTCCGGTGAC+CGG | 0.478429 | tig0040164:-10530 | Msa1459260:three_prime_UTR |
| GTGATCTTAAATATTATGAT+GGG | 0.479498 | tig0040164:-12408 | Msa1459260:CDS |
| AACATTACTGTCATCTGGAC+GGG | 0.479601 | tig0040164:+14567 | Msa1459260:intergenic |
| AGTACGACCTTGCAGCTTGA+AGG | 0.480052 | tig0040164:+12383 | Msa1459260:intergenic |
| AGCCAGTGGACTTGAGCAAC+GGG | 0.481590 | tig0040164:-11086 | Msa1459260:intron |
| CAAAAGGAAAAGCATTGATT+CGG | 0.481931 | tig0040164:-10734 | Msa1459260:three_prime_UTR |
| GTCTCACCAAAGTGTCCGTT+GGG | 0.487973 | tig0040164:-14460 | Msa1459260:CDS |
| ACTTGCAAAAGTAGCGGATG+TGG | 0.490800 | tig0040164:-11194 | Msa1459260:CDS |
| TCATATCCCAACGGACACTT+TGG | 0.491316 | tig0040164:+14454 | Msa1459260:intergenic |
| TCATGTAGAGCATGAAAGTA+AGG | 0.493199 | tig0040164:-14512 | Msa1459260:CDS |
| GTCTTTGTAGGTTCTTGTTG+TGG | 0.496387 | tig0040164:-14630 | Msa1459260:intron |
| TACCCGTTGCTCAAGTCCAC+TGG | 0.497823 | tig0040164:+11084 | Msa1459260:intergenic |
| AAGGTCATGCCAGGATCAAA+AGG | 0.498126 | tig0040164:-14141 | Msa1459260:CDS |
| GAACAAAGGCATTATAATAG+AGG | 0.499392 | tig0040164:-10656 | Msa1459260:three_prime_UTR |
| AGACTTCCTAAGAAGCCAAA+AGG | 0.500285 | tig0040164:-10814 | Msa1459260:CDS |
| TCAGAGTTATGTTCACAACT+TGG | 0.500296 | tig0040164:-13659 | Msa1459260:CDS |
| CTGTGATCCTCTCCGGTCAC+CGG | 0.502610 | tig0040164:+10518 | Msa1459260:intergenic |
| CAAGTTGAACAAACAATATG+AGG | 0.503148 | tig0040164:-10777 | Msa1459260:exon |
| TCTTAGTTGTATGGTATGCC+AGG | 0.506853 | tig0040164:-14407 | Msa1459260:CDS |
| GGAGCAGTCTTGGGTATGCT+TGG | 0.510369 | tig0040164:-13638 | Msa1459260:CDS |
| TATAGAATATTCATAAATGT+TGG | 0.513127 | tig0040164:-10339 | Msa1459260:three_prime_UTR |
| TGAAAGTAAGGTGAAGAAAG+AGG | 0.514258 | tig0040164:-14500 | Msa1459260:CDS |
| GCGGATGTGGACAAAAGTCT+AGG | 0.516734 | tig0040164:-11181 | Msa1459260:CDS |
| TGTGTGATGATGCGGTTGGT+TGG | 0.518754 | tig0040164:+15464 | Msa1459260:intergenic |
| CACTTTCTAAATTCTGAGCA+CGG | 0.525130 | tig0040164:+13747 | Msa1459260:intergenic |
| TTATCATTTCTAGTCAAATG+AGG | 0.526336 | tig0040164:-10189 | Msa1459260:intron |
| CGGATGTGGACAAAAGTCTA+GGG | 0.527420 | tig0040164:-11180 | Msa1459260:CDS |
| ATTCAGAGTGATGGATATCT+CGG | 0.530218 | tig0040164:-10617 | Msa1459260:three_prime_UTR |
| ATACACGCCTTGCTAGCAAA+AGG | 0.544777 | tig0040164:-10750 | Msa1459260:three_prime_UTR |
| ACACCTTGAAGATCAGCATC+CGG | 0.549423 | tig0040164:+14181 | Msa1459260:intergenic |
| GAAGGAGCTGTGATCCTCTC+CGG | 0.553377 | tig0040164:+10511 | Msa1459260:intergenic |
| AACTGCTATCACCCATTGCT+CGG | 0.561570 | tig0040164:+12645 | Msa1459260:intergenic |
| TGTCTCACCAAAGTGTCCGT+TGG | 0.567664 | tig0040164:-14461 | Msa1459260:CDS |
| TCATGTGTAAAATAAAGCTC+AGG | 0.568004 | tig0040164:-10680 | Msa1459260:three_prime_UTR |
| TGGCATACCATACAACTAAG+AGG | 0.568439 | tig0040164:+14409 | Msa1459260:intergenic |
| GGATTGTGTGATGATGCGGT+TGG | 0.572386 | tig0040164:+15460 | Msa1459260:intergenic |
| GGTCACCGGAAAGTTCTAGT+AGG | 0.577461 | tig0040164:+10532 | Msa1459260:intergenic |
| AGGTCTGTTAATTTAGACAA+TGG | 0.578810 | tig0040164:-14121 | Msa1459260:CDS |
| ATTTCTGTCAAAGTTGCCAA+AGG | 0.579969 | tig0040164:-12591 | Msa1459260:CDS |
| GCTTTATTGAAGGTCATGCC+AGG | 0.582251 | tig0040164:-14150 | Msa1459260:CDS |
| TTGCAGAAAACGTGAGAACA+AGG | 0.583502 | tig0040164:+14355 | Msa1459260:intergenic |
| CGTTTCACTTGCAAAAGTAG+CGG | 0.585062 | tig0040164:-11200 | Msa1459260:CDS |
| TTGTGGATTGTGTGATGATG+CGG | 0.585635 | tig0040164:+15456 | Msa1459260:intergenic |
| AAGCCAGTGGACTTGAGCAA+CGG | 0.586144 | tig0040164:-11087 | Msa1459260:CDS |
| TCAATATCAGCCCCACATAA+CGG | 0.586338 | tig0040164:+14214 | Msa1459260:intergenic |
| ATGCACCAATAAGGTACTGA+AGG | 0.597825 | tig0040164:+10493 | Msa1459260:intergenic |
| TAAGGACTGTCCGTTATGTG+GGG | 0.607937 | tig0040164:-14224 | Msa1459260:CDS |
| GATGAATTCTGAGGAAATTG+TGG | 0.609327 | tig0040164:+15439 | Msa1459260:intergenic |
| TGGTGTCGAATAGAAGTGCC+TGG | 0.612439 | tig0040164:+14389 | Msa1459260:intergenic |
| ATGGGGACCTTCAAGCTGCA+AGG | 0.614405 | tig0040164:-12390 | Msa1459260:CDS |
| TTCTTGAAATCCATCACTAG+CGG | 0.615101 | tig0040164:+11147 | Msa1459260:intergenic |
| AAACATTACTGTCATCTGGA+CGG | 0.618781 | tig0040164:+14566 | Msa1459260:intergenic |
| AATAAAGCTCAGGTGAACAA+AGG | 0.621839 | tig0040164:-10670 | Msa1459260:three_prime_UTR |
| TGATATTGAGAAGATCGAGC+CGG | 0.626322 | tig0040164:-14200 | Msa1459260:CDS |
| AAACTAGAAATGAAGTAACA+TGG | 0.628201 | tig0040164:-10414 | Msa1459260:three_prime_UTR |
| AAAGACACTTGCAACAACGT+TGG | 0.629369 | tig0040164:-15397 | Msa1459260:CDS |
| GAAGTAACATGGATGTATGT+CGG | 0.632354 | tig0040164:-10403 | Msa1459260:three_prime_UTR |
| AATTGTTCTTGACAACATCA+CGG | 0.633322 | tig0040164:+12338 | Msa1459260:intergenic |
| GTTGCCAAAGGATGATATGG+AGG | 0.634024 | tig0040164:-12579 | Msa1459260:intron |
| AGACAATGGCGAAGAAGCAG+CGG | 0.639990 | tig0040164:-14107 | Msa1459260:CDS |
| TGATCTTAAATATTATGATG+GGG | 0.641979 | tig0040164:-12407 | Msa1459260:CDS |
| ATGTTACAGAATCAAGAGAG+AGG | 0.642492 | tig0040164:+15355 | Msa1459260:intergenic |
| GTCTGTGAGTCATATCCCAA+CGG | 0.646935 | tig0040164:+14445 | Msa1459260:intergenic |
| TGCGAACGTCTTCTGCACAT+AGG | 0.663682 | tig0040164:+13708 | Msa1459260:intergenic |
| ACATTACTGTCATCTGGACG+GGG | 0.667906 | tig0040164:+14568 | Msa1459260:intergenic |
| GAACTTTCCGGTGACCGGAG+AGG | 0.682585 | tig0040164:-10525 | Msa1459260:three_prime_UTR |
| GGATGTGGACAAAAGTCTAG+GGG | 0.700647 | tig0040164:-11179 | Msa1459260:CDS |
| GAATTGTGCGATGAATTCTG+AGG | 0.725423 | tig0040164:+15430 | Msa1459260:intergenic |
| ACATTGAAATCTGAAGCCAG+TGG | 0.739359 | tig0040164:-11100 | Msa1459260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAGATATAGATAAAAA+TGG | + | tig0040164:12570-12589 | Msa1459260:intergenic | 10.0% |
| !! | AAAAATTTAGTATTAATTGA+TGG | - | tig0040164:14612-14631 | Msa1459260:CDS | 10.0% |
| !!! | TATAATTCATTTTGTAAAAT+TGG | - | tig0040164:15351-15370 | Msa1459260:intron | 10.0% |
| !!! | AACATCATAAATTTTCAAAA+GGG | + | tig0040164:10355-10374 | Msa1459260:intergenic | 15.0% |
| !! | TTAGAATAAGCATTAATTAA+AGG | + | tig0040164:11630-11649 | Msa1459260:intergenic | 15.0% |
| !! | AGATATAATTCAAATATAAG+TGG | + | tig0040164:13351-13370 | Msa1459260:intergenic | 15.0% |
| !! | TTGAATTATATCTAATTGTA+AGG | - | tig0040164:13358-13377 | Msa1459260:intron | 15.0% |
| !!! | AATAAACTGAAAACATTTTT+TGG | + | tig0040164:13485-13504 | Msa1459260:intergenic | 15.0% |
| !!! | AAGCAAATTTTATTTTCAAA+CGG | + | tig0040164:13896-13915 | Msa1459260:intergenic | 15.0% |
| !!! | ATATGTTTTTATCATTTTCA+TGG | + | tig0040164:13992-14011 | Msa1459260:intergenic | 15.0% |
| !! | TATAGAATATTCATAAATGT+TGG | - | tig0040164:15292-15311 | Msa1459260:intron | 15.0% |
| !!! | TTGAATCTTGATGTTATTTT+CGG | - | tig0040164:10326-10345 | Msa1459260:three_prime_UTR | 20.0% |
| !!! | CAACATCATAAATTTTCAAA+AGG | + | tig0040164:10356-10375 | Msa1459260:intergenic | 20.0% |
| !!! | CTTTTGAAAATTTATGATGT+TGG | - | tig0040164:10354-10373 | Msa1459260:three_prime_UTR | 20.0% |
| !!! | AATTTGTTGTAATTCTATTC+TGG | - | tig0040164:10444-10463 | Msa1459260:three_prime_UTR | 20.0% |
| !!! | ATTTGTTGTAATTCTATTCT+GGG | - | tig0040164:10445-10464 | Msa1459260:three_prime_UTR | 20.0% |
| !! | TAAATTCGAGAAATAAACAT+GGG | + | tig0040164:11315-11334 | Msa1459260:intergenic | 20.0% |
| !! | ATAAATTCGAGAAATAAACA+TGG | + | tig0040164:11316-11335 | Msa1459260:intergenic | 20.0% |
| !! | GTGATCTTAAATATTATGAT+GGG | - | tig0040164:13223-13242 | Msa1459260:intron | 20.0% |
| !! | TGATCTTAAATATTATGATG+GGG | - | tig0040164:13224-13243 | Msa1459260:intron | 20.0% |
| !!! | TTCAAATGAAATTTAAAGCA+AGG | + | tig0040164:13391-13410 | Msa1459260:intergenic | 20.0% |
| !!! | AAATAAAATTTGCTTTGACA+AGG | - | tig0040164:13901-13920 | Msa1459260:intron | 20.0% |
| !! | TATTATAGAAAGAGAAAAGA+AGG | - | tig0040164:14009-14028 | Msa1459260:intron | 20.0% |
| !! | TTGATATAAACAACGAAAAA+AGG | + | tig0040164:14345-14364 | Msa1459260:intergenic | 20.0% |
| !!! | TTTTTCGTTGTTTATATCAA+TGG | - | tig0040164:14345-14364 | Msa1459260:intron | 20.0% |
| !! | TTGATATAAACAACGAAAAA+AGG | + | tig0040164:14345-14364 | Msa1459260:intergenic | 20.0% |
| !! | TTCGTTGTTTATATCAATTT+AGG | - | tig0040164:14395-14414 | Msa1459260:CDS | 20.0% |
| !! | TAAATGTTTCTTTATGTGAT+TGG | - | tig0040164:14926-14945 | Msa1459260:intron | 20.0% |
| !!! | TTCATTTTGTAAAATTGGTT+TGG | - | tig0040164:15356-15375 | Msa1459260:intron | 20.0% |
| ! | TATGATGTTGGAATAATTTG+TGG | - | tig0040164:10366-10385 | Msa1459260:three_prime_UTR | 25.0% |
| !! | AATGATACTTTTGTGTGTTT+TGG | - | tig0040164:10614-10633 | Msa1459260:three_prime_UTR | 25.0% |
| !! | GATTGATACTTTTCTGTTTT+TGG | - | tig0040164:10760-10779 | Msa1459260:exon | 25.0% |
| !!! | GTTGCACATTTTGTTTATAT+AGG | - | tig0040164:10782-10801 | Msa1459260:CDS | 25.0% |
| ! | ATTTGTGTCTCTAATTTATG+AGG | - | tig0040164:10890-10909 | Msa1459260:intron | 25.0% |
| !!! | TTACTACTTTTTCGTGTTTT+TGG | - | tig0040164:10921-10940 | Msa1459260:intron | 25.0% |
| !!! | ATTTTAACAAAAGGACATAC+TGG | + | tig0040164:11042-11061 | Msa1459260:intergenic | 25.0% |
| ! | TATCCAGATAAACAACTTAT+AGG | + | tig0040164:11738-11757 | Msa1459260:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCTGGATA+TGG | - | tig0040164:11738-11757 | Msa1459260:intron | 25.0% |
| !!! | CTACAGCTTTTTATTTTACT+AGG | - | tig0040164:11793-11812 | Msa1459260:intron | 25.0% |
| ! | AAATGTTATTATCAAGTGGT+CGG | + | tig0040164:11836-11855 | Msa1459260:intergenic | 25.0% |
| ! | GGTAAAATGTTATTATCAAG+TGG | + | tig0040164:11840-11859 | Msa1459260:intergenic | 25.0% |
| !!! | ACCATTTGTAATTCTAAAAC+AGG | - | tig0040164:11857-11876 | Msa1459260:intron | 25.0% |
| ! | CATAATAAACCGAGATATAA+AGG | - | tig0040164:12163-12182 | Msa1459260:intron | 25.0% |
| ! | GTGTTATAGCATAACAAAAT+TGG | - | tig0040164:12240-12259 | Msa1459260:intron | 25.0% |
| ! | AATGTTTAGATTAGAATCAG+TGG | - | tig0040164:12455-12474 | Msa1459260:intron | 25.0% |
| ! | GTTTGAATTCAAATCATCTT+TGG | - | tig0040164:12496-12515 | Msa1459260:intron | 25.0% |
| ! | AAACTAGCAAAAACTAATTC+CGG | + | tig0040164:12643-12662 | Msa1459260:intergenic | 25.0% |
| !!! | TCCTAAAGCATTAGTTTTTT+AGG | - | tig0040164:12690-12709 | Msa1459260:intron | 25.0% |
| !!! | CCTAAAGCATTAGTTTTTTA+GGG | - | tig0040164:12691-12710 | Msa1459260:intron | 25.0% |
| ! | ATGAATCATAACAGACTTAA+AGG | + | tig0040164:12785-12804 | Msa1459260:intergenic | 25.0% |
| ! | TTGTGAAACAATAAGAACTA+TGG | + | tig0040164:12890-12909 | Msa1459260:intergenic | 25.0% |
| !! | ACCAATTTTATTAAGCGAAA+CGG | + | tig0040164:13205-13224 | Msa1459260:intergenic | 25.0% |
| ! | GGTGATCTTAAATATTATGA+TGG | - | tig0040164:13222-13241 | Msa1459260:intron | 25.0% |
| !! | AAATGAAATTTAAAGCAAGG+CGG | + | tig0040164:13388-13407 | Msa1459260:intergenic | 25.0% |
| ! | AATTAGTTCATTATCGAAAC+AGG | - | tig0040164:13664-13683 | Msa1459260:CDS | 25.0% |
| ! | ATTAGTTCATTATCGAAACA+GGG | - | tig0040164:13665-13684 | Msa1459260:CDS | 25.0% |
| !! | AAATCACATCATGAAGTATT+TGG | + | tig0040164:13731-13750 | Msa1459260:intergenic | 25.0% |
| ! | ATGAATCTAACTAATGTGAT+TGG | + | tig0040164:13757-13776 | Msa1459260:intergenic | 25.0% |
| !! | TAGATTCATTTCTAGACATA+AGG | - | tig0040164:13768-13787 | Msa1459260:intron | 25.0% |
| ! | AATTAACCTAAGTGGTTAAT+GGG | + | tig0040164:14244-14263 | Msa1459260:intergenic | 25.0% |
| ! | AAAGATTCAATTAACCTAAG+TGG | + | tig0040164:14252-14271 | Msa1459260:intergenic | 25.0% |
| !! | TTCAACTTGTTCTTGTTTAT+CGG | + | tig0040164:14843-14862 | Msa1459260:intergenic | 25.0% |
| ! | GAGAAATACAGTGAATAAAA+AGG | + | tig0040164:15076-15095 | Msa1459260:intergenic | 25.0% |
| ! | AAACTAGAAATGAAGTAACA+TGG | - | tig0040164:15217-15236 | Msa1459260:intron | 25.0% |
| !!! | TTCATAAATGTTGGTGTTTT+TGG | - | tig0040164:15301-15320 | Msa1459260:intron | 25.0% |
| !!! | TCATAAATGTTGGTGTTTTT+GGG | - | tig0040164:15302-15321 | Msa1459260:intron | 25.0% |
| !!! | TTATCATTTCTAGTCAAATG+AGG | - | tig0040164:15442-15461 | Msa1459260:CDS | 25.0% |
| ! | TTGGAATAATTTGTGGTACT+TGG | - | tig0040164:10373-10392 | Msa1459260:three_prime_UTR | 30.0% |
| ! | TGGAATAATTTGTGGTACTT+GGG | - | tig0040164:10374-10393 | Msa1459260:three_prime_UTR | 30.0% |
| TTGTAATTCTATTCTGGGTA+TGG | - | tig0040164:10450-10469 | Msa1459260:three_prime_UTR | 30.0% | |
| TTAGAAACATTACTGTCATC+TGG | + | tig0040164:11072-11091 | Msa1459260:intergenic | 30.0% | |
| AGGTCTGTTAATTTAGACAA+TGG | - | tig0040164:11510-11529 | Msa1459260:intron | 30.0% | |
| CAACCTATAAGTTGTTTATC+TGG | - | tig0040164:11732-11751 | Msa1459260:intron | 30.0% | |
| !!! | GCCTGTTTTAGAATTACAAA+TGG | + | tig0040164:11861-11880 | Msa1459260:intergenic | 30.0% |
| TCAGACATTGTTTAGACATA+TGG | - | tig0040164:12059-12078 | Msa1459260:intron | 30.0% | |
| ACATTGTTTAGACATATGGT+TGG | - | tig0040164:12063-12082 | Msa1459260:intron | 30.0% | |
| CCAAGAAAGATAAAAGCAAA+CGG | - | tig0040164:12431-12450 | Msa1459260:CDS | 30.0% | |
| CAAGAAAGATAAAAGCAAAC+GGG | - | tig0040164:12432-12451 | Msa1459260:CDS | 30.0% | |
| TCAAATCATCTTTGGTATTG+AGG | - | tig0040164:12504-12523 | Msa1459260:intron | 30.0% | |
| ! | CAAATCATCTTTGGTATTGA+GGG | - | tig0040164:12505-12524 | Msa1459260:intron | 30.0% |
| CCCTAAAAAACTAATGCTTT+AGG | + | tig0040164:12694-12713 | Msa1459260:intergenic | 30.0% | |
| !!! | AGCATTAGTTTTTTAGGGAT+AGG | - | tig0040164:12696-12715 | Msa1459260:intron | 30.0% |
| AACAATAAGAACTATGGTTC+AGG | + | tig0040164:12884-12903 | Msa1459260:intergenic | 30.0% | |
| TCCGTTTCGCTTAATAAAAT+TGG | - | tig0040164:13201-13220 | Msa1459260:intron | 30.0% | |
| AATTGTTCTTGACAACATCA+CGG | + | tig0040164:13296-13315 | Msa1459260:intergenic | 30.0% | |
| CAATTCAAATGTTTCATCTC+AGG | - | tig0040164:13311-13330 | Msa1459260:intron | 30.0% | |
| ! | AATGAAATTTAAAGCAAGGC+GGG | + | tig0040164:13387-13406 | Msa1459260:intergenic | 30.0% |
| ! | TCTATTTTCTTAAGCCATAC+TGG | + | tig0040164:13520-13539 | Msa1459260:intergenic | 30.0% |
| TGATAAGCTCTTACATCTTA+TGG | - | tig0040164:13623-13642 | Msa1459260:intron | 30.0% | |
| CTCTTACATCTTATGGTATA+AGG | - | tig0040164:13630-13649 | Msa1459260:CDS | 30.0% | |
| ! | ATTCATTTCTAGACATAAGG+AGG | - | tig0040164:13771-13790 | Msa1459260:intron | 30.0% |
| ! | TTCATTTCTAGACATAAGGA+GGG | - | tig0040164:13772-13791 | Msa1459260:intron | 30.0% |
| ! | AAAATTTGCTTTGACAAGGT+TGG | - | tig0040164:13905-13924 | Msa1459260:intron | 30.0% |
| ! | AAATTTGCTTTGACAAGGTT+GGG | - | tig0040164:13906-13925 | Msa1459260:intron | 30.0% |
| TATAGAAAGAGAAAAGAAGG+CGG | - | tig0040164:14012-14031 | Msa1459260:intron | 30.0% | |
| TGCACTAGTGAAAACTAAAA+TGG | - | tig0040164:14086-14105 | Msa1459260:intron | 30.0% | |
| GGCAAGATAAATTGTACTTA+TGG | + | tig0040164:14223-14242 | Msa1459260:intergenic | 30.0% | |
| CAATTAACCTAAGTGGTTAA+TGG | + | tig0040164:14245-14264 | Msa1459260:intergenic | 30.0% | |
| ! | CAAGTTGAACAAACAATATG+AGG | - | tig0040164:14854-14873 | Msa1459260:intron | 30.0% |
| !! | CAAAAGGAAAAGCATTGATT+CGG | - | tig0040164:14897-14916 | Msa1459260:intron | 30.0% |
| TCATGTGTAAAATAAAGCTC+AGG | - | tig0040164:14951-14970 | Msa1459260:intron | 30.0% | |
| !! | GAACAAAGGCATTATAATAG+AGG | - | tig0040164:14975-14994 | Msa1459260:intron | 30.0% |
| ! | TGGTGACTATAACTTGTATT+TGG | - | tig0040164:15376-15395 | Msa1459260:CDS | 30.0% |
| ! | GATGAATTCTGAGGAAATTG+TGG | + | tig0040164:10195-10214 | None:intergenic | 35.0% |
| ATGTTACAGAATCAAGAGAG+AGG | + | tig0040164:10279-10298 | Msa1459260:intergenic | 35.0% | |
| AATTCTATTCTGGGTATGGT+TGG | - | tig0040164:10454-10473 | Msa1459260:three_prime_UTR | 35.0% | |
| TGCAAAGATGTTGCATTTGT+TGG | - | tig0040164:10669-10688 | Msa1459260:three_prime_UTR | 35.0% | |
| TGCAAATGTCTTGTCTTTGT+AGG | - | tig0040164:10989-11008 | Msa1459260:intron | 35.0% | |
| AAACATTACTGTCATCTGGA+CGG | + | tig0040164:11068-11087 | Msa1459260:intergenic | 35.0% | |
| TCATGTAGAGCATGAAAGTA+AGG | - | tig0040164:11119-11138 | Msa1459260:CDS | 35.0% | |
| TGAAAGTAAGGTGAAGAAAG+AGG | - | tig0040164:11131-11150 | Msa1459260:CDS | 35.0% | |
| !!! | GACTCACAGACTTTTAAGAT+TGG | - | tig0040164:11198-11217 | Msa1459260:CDS | 35.0% |
| ! | TTTTCTGCAAGTATGTATCG+CGG | - | tig0040164:11289-11308 | Msa1459260:intron | 35.0% |
| ! | GTAGTTGATCGCTTTATTGA+AGG | - | tig0040164:11471-11490 | Msa1459260:intron | 35.0% |
| ! | ATTAACAGACCTTTTGATCC+TGG | + | tig0040164:11502-11521 | Msa1459260:intergenic | 35.0% |
| TAATAAGCCTGTCATATACG+AGG | - | tig0040164:11551-11570 | Msa1459260:intron | 35.0% | |
| TTTGGAAAGAGGTTCTTTCT+TGG | - | tig0040164:11581-11600 | Msa1459260:intron | 35.0% | |
| AATTAAAGGACATACCCTCA+TGG | + | tig0040164:11616-11635 | Msa1459260:intergenic | 35.0% | |
| CACTTTCTAAATTCTGAGCA+CGG | + | tig0040164:11887-11906 | Msa1459260:intergenic | 35.0% | |
| ACATAGGTTCAGTCTTGATT+TGG | + | tig0040164:11910-11929 | Msa1459260:intergenic | 35.0% | |
| TCAGAGTTATGTTCACAACT+TGG | - | tig0040164:11972-11991 | Msa1459260:intron | 35.0% | |
| TAAACCGAGATATAAAGGCA+TGG | - | tig0040164:12168-12187 | Msa1459260:intron | 35.0% | |
| TTGACCATGCCTTTATATCT+CGG | + | tig0040164:12175-12194 | Msa1459260:intergenic | 35.0% | |
| TAACCAGTGTTGTCAAATAG+CGG | - | tig0040164:12212-12231 | Msa1459260:intron | 35.0% | |
| !! | CCGTTTGCTTTTATCTTTCT+TGG | + | tig0040164:12434-12453 | Msa1459260:intergenic | 35.0% |
| AGATTAGAATCAGTGGAGAT+TGG | - | tig0040164:12462-12481 | Msa1459260:intron | 35.0% | |
| AAAAGCAGTATTCGCCTTTA+TGG | - | tig0040164:12614-12633 | Msa1459260:CDS | 35.0% | |
| ! | TATTTGAAAGTGCGAGAGAA+CGG | + | tig0040164:12668-12687 | Msa1459260:intergenic | 35.0% |
| ! | GTTTGTATTTTCTCCTTCAC+CGG | - | tig0040164:12744-12763 | Msa1459260:intron | 35.0% |
| ! | TTTGTATTTTCTCCTTCACC+GGG | - | tig0040164:12745-12764 | Msa1459260:intron | 35.0% |
| ATGGTTCAGGATGAATGAAA+CGG | + | tig0040164:12871-12890 | Msa1459260:intergenic | 35.0% | |
| ATTTCTGTCAAAGTTGCCAA+AGG | - | tig0040164:13040-13059 | Msa1459260:intron | 35.0% | |
| AAAGTTGCCAAAGGATGATA+TGG | - | tig0040164:13049-13068 | Msa1459260:intron | 35.0% | |
| ATAACCTCCATATCATCCTT+TGG | + | tig0040164:13059-13078 | Msa1459260:intergenic | 35.0% | |
| !! | CATTAGAACCTTGCTTTTCT+TGG | - | tig0040164:13081-13100 | Msa1459260:intron | 35.0% |
| AAAGTGTGTGTGTAATCTGT+AGG | + | tig0040164:13182-13201 | Msa1459260:intergenic | 35.0% | |
| TCAAATGTTTCATCTCAGGT+TGG | - | tig0040164:13315-13334 | Msa1459260:intron | 35.0% | |
| TTTCCATTAGCTATCCAGTA+TGG | - | tig0040164:13503-13522 | Msa1459260:intron | 35.0% | |
| AAGCTAAAATCCACATACTG+AGG | + | tig0040164:13691-13710 | Msa1459260:intergenic | 35.0% | |
| ! | TCATTTCTAGACATAAGGAG+GGG | - | tig0040164:13773-13792 | Msa1459260:intron | 35.0% |
| AGTTAAGAAGCAGACTGATA+AGG | - | tig0040164:13826-13845 | Msa1459260:intron | 35.0% | |
| ATAGAAAGAGAAAAGAAGGC+GGG | - | tig0040164:14013-14032 | Msa1459260:intron | 35.0% | |
| ! | ATAACTTTTCCACTGATCAG+AGG | - | tig0040164:14113-14132 | Msa1459260:CDS | 35.0% |
| TTACAAGAACTCACGTAATG+AGG | + | tig0040164:14151-14170 | Msa1459260:intergenic | 35.0% | |
| CGTTGTTTATATCAATGGCA+TGG | - | tig0040164:14350-14369 | Msa1459260:intron | 35.0% | |
| TTCTTGAAATCCATCACTAG+CGG | + | tig0040164:14487-14506 | Msa1459260:intergenic | 35.0% | |
| CAATTTCCATCCTTCTATAG+CGG | - | tig0040164:14783-14802 | Msa1459260:intron | 35.0% | |
| AATAAAGCTCAGGTGAACAA+AGG | - | tig0040164:14961-14980 | Msa1459260:intron | 35.0% | |
| ! | AGACTTTTCATTCAGAGTGA+TGG | - | tig0040164:15005-15024 | Msa1459260:intron | 35.0% |
| !! | ATTCAGAGTGATGGATATCT+CGG | - | tig0040164:15014-15033 | Msa1459260:intron | 35.0% |
| !! | ATGGATATCTCGGTCATTTT+TGG | - | tig0040164:15024-15043 | Msa1459260:intron | 35.0% |
| AGTACCTTATTGGTGCATAA+GGG | - | tig0040164:15143-15162 | Msa1459260:intron | 35.0% | |
| GAAGTAACATGGATGTATGT+CGG | - | tig0040164:15228-15247 | Msa1459260:intron | 35.0% | |
| TCTAGTCAAATGAGGTTTGA+AGG | - | tig0040164:15450-15469 | Msa1459260:CDS | 35.0% | |
| ! | TTGTGGATTGTGTGATGATG+CGG | + | tig0040164:10178-10197 | None:intergenic | 40.0% |
| GAATTGTGCGATGAATTCTG+AGG | + | tig0040164:10204-10223 | None:intergenic | 40.0% | |
| AAAGACACTTGCAACAACGT+TGG | - | tig0040164:10234-10253 | Msa1459260:three_prime_UTR | 40.0% | |
| GTCTTTGTAGGTTCTTGTTG+TGG | - | tig0040164:11001-11020 | Msa1459260:intron | 40.0% | |
| !! | GGACGGGGAATTTTAACAAA+AGG | + | tig0040164:11051-11070 | Msa1459260:intergenic | 40.0% |
| AACATTACTGTCATCTGGAC+GGG | + | tig0040164:11067-11086 | Msa1459260:intergenic | 40.0% | |
| ! | GATTGGTCCTCTTAGTTGTA+TGG | - | tig0040164:11215-11234 | Msa1459260:CDS | 40.0% |
| TGGCATACCATACAACTAAG+AGG | + | tig0040164:11225-11244 | Msa1459260:intergenic | 40.0% | |
| TCTTAGTTGTATGGTATGCC+AGG | - | tig0040164:11224-11243 | Msa1459260:intron | 40.0% | |
| TTGCAGAAAACGTGAGAACA+AGG | + | tig0040164:11279-11298 | Msa1459260:intergenic | 40.0% | |
| TTTATGTCTGTCTGATGTGC+AGG | - | tig0040164:11367-11386 | Msa1459260:intron | 40.0% | |
| TTATGTCTGTCTGATGTGCA+GGG | - | tig0040164:11368-11387 | Msa1459260:intron | 40.0% | |
| GGCATGTATATTGCGCTTTA+AGG | - | tig0040164:11389-11408 | Msa1459260:intron | 40.0% | |
| TTTAAGGACTGTCCGTTATG+TGG | - | tig0040164:11405-11424 | Msa1459260:intron | 40.0% | |
| TTAAGGACTGTCCGTTATGT+GGG | - | tig0040164:11406-11425 | Msa1459260:intron | 40.0% | |
| TCAATATCAGCCCCACATAA+CGG | + | tig0040164:11420-11439 | Msa1459260:intergenic | 40.0% | |
| TGATATTGAGAAGATCGAGC+CGG | - | tig0040164:11431-11450 | Msa1459260:intron | 40.0% | |
| CATATACGAGGATGTGTCTT+TGG | - | tig0040164:11563-11582 | Msa1459260:intron | 40.0% | |
| TCTGGATATGGCATTGTTGA+TGG | - | tig0040164:11750-11769 | Msa1459260:intron | 40.0% | |
| CGCAGTCAGATAGAAAAAGT+CGG | - | tig0040164:11942-11961 | Msa1459260:intron | 40.0% | |
| CTAAGAGTAGTGTATCTGTG+AGG | - | tig0040164:12115-12134 | Msa1459260:intron | 40.0% | |
| TAGTGTATCTGTGAGGACTT+AGG | - | tig0040164:12122-12141 | Msa1459260:intron | 40.0% | |
| ! | TAAAGGCATGGTCAAAATGC+TGG | - | tig0040164:12180-12199 | Msa1459260:intron | 40.0% |
| ATGCTGTCAAATAGCAGCTA+TGG | - | tig0040164:12304-12323 | Msa1459260:intron | 40.0% | |
| !!! | GTATTGAGGGTGTTGAGTTT+TGG | - | tig0040164:12518-12537 | Msa1459260:intron | 40.0% |
| ACTAATTCCGGACACCATAA+AGG | + | tig0040164:12631-12650 | Msa1459260:intergenic | 40.0% | |
| GTTCTCTCGCACTTTCAAAT+AGG | - | tig0040164:12667-12686 | Msa1459260:intron | 40.0% | |
| ! | TTGTATTTTCTCCTTCACCG+GGG | - | tig0040164:12746-12765 | Msa1459260:intron | 40.0% |
| TGGTTCAGGATGAATGAAAC+GGG | + | tig0040164:12870-12889 | Msa1459260:intergenic | 40.0% | |
| AACATCACGGCGAACATTTA+AGG | + | tig0040164:13283-13302 | Msa1459260:intergenic | 40.0% | |
| GTTCTTGCAAACAGTCACAT+AGG | + | tig0040164:13438-13457 | Msa1459260:intergenic | 40.0% | |
| AAGCCATACTGGATAGCTAA+TGG | + | tig0040164:13509-13528 | Msa1459260:intergenic | 40.0% | |
| ATAAGGAGGGGATAGAATGA+TGG | - | tig0040164:13785-13804 | Msa1459260:intron | 40.0% | |
| TAAGAAGCAGACTGATAAGG+AGG | - | tig0040164:13829-13848 | Msa1459260:intron | 40.0% | |
| GTCCATGTCAGTATTATGCT+GGG | + | tig0040164:13874-13893 | Msa1459260:intergenic | 40.0% | |
| TCACGTAATGAGGAAACTAC+GGG | + | tig0040164:14141-14160 | Msa1459260:intergenic | 40.0% | |
| CTCACGTAATGAGGAAACTA+CGG | + | tig0040164:14142-14161 | Msa1459260:intergenic | 40.0% | |
| ATCTTGCCCATTAACCACTT+AGG | - | tig0040164:14235-14254 | Msa1459260:CDS | 40.0% | |
| CCAAATGACATGTTCTAACG+TGG | + | tig0040164:14293-14312 | Msa1459260:intergenic | 40.0% | |
| CCACGTTAGAACATGTCATT+TGG | - | tig0040164:14290-14309 | Msa1459260:intron | 40.0% | |
| ! | GAACATGTCATTTGGACAGA+AGG | - | tig0040164:14298-14317 | Msa1459260:intron | 40.0% |
| !!! | CGCTACTTTTGCAAGTGAAA+CGG | + | tig0040164:14433-14452 | Msa1459260:intergenic | 40.0% |
| CGTTTCACTTGCAAAAGTAG+CGG | - | tig0040164:14431-14450 | Msa1459260:CDS | 40.0% | |
| GATGAAAAATCCGCTAGTGA+TGG | - | tig0040164:14474-14493 | Msa1459260:CDS | 40.0% | |
| AAGAGATTCCAGCAAGTCTA+TGG | + | tig0040164:14511-14530 | Msa1459260:intergenic | 40.0% | |
| ! | ACATTGAAATCTGAAGCCAG+TGG | - | tig0040164:14531-14550 | Msa1459260:CDS | 40.0% |
| AAACTGATAGCCGCTATAGA+AGG | + | tig0040164:14796-14815 | Msa1459260:intergenic | 40.0% | |
| AGACTTCCTAAGAAGCCAAA+AGG | - | tig0040164:14817-14836 | Msa1459260:intron | 40.0% | |
| !! | GTTCTTGTTTATCGGCCTTT+TGG | + | tig0040164:14835-14854 | Msa1459260:intergenic | 40.0% |
| ! | TGCTTTTCCTTTTGCTAGCA+AGG | + | tig0040164:14891-14910 | Msa1459260:intergenic | 40.0% |
| TCTCTCCTACTAGAACTTTC+CGG | - | tig0040164:15094-15113 | Msa1459260:intron | 40.0% | |
| !! | ATGCACCAATAAGGTACTGA+AGG | + | tig0040164:15141-15160 | Msa1459260:intergenic | 40.0% |
| CAGTACCTTATTGGTGCATA+AGG | - | tig0040164:15142-15161 | Msa1459260:intron | 40.0% | |
| !! | TCTGGGTATGGTTGGTTTGA+TGG | - | tig0040164:10462-10481 | Msa1459260:three_prime_UTR | 45.0% |
| !!! | TGCGAAGCTGTTGTTTTCGT+TGG | - | tig0040164:10828-10847 | Msa1459260:CDS | 45.0% |
| ACATTACTGTCATCTGGACG+GGG | + | tig0040164:11066-11085 | Msa1459260:intergenic | 45.0% | |
| TCATATCCCAACGGACACTT+TGG | + | tig0040164:11180-11199 | Msa1459260:intergenic | 45.0% | |
| GTCTGTGAGTCATATCCCAA+CGG | + | tig0040164:11189-11208 | Msa1459260:intergenic | 45.0% | |
| AGAACAAGGCACACATTTGC+TGG | + | tig0040164:11265-11284 | Msa1459260:intergenic | 45.0% | |
| TAAGGACTGTCCGTTATGTG+GGG | - | tig0040164:11407-11426 | Msa1459260:intron | 45.0% | |
| ACACCTTGAAGATCAGCATC+CGG | + | tig0040164:11453-11472 | Msa1459260:intergenic | 45.0% | |
| ! | GCTTTATTGAAGGTCATGCC+AGG | - | tig0040164:11481-11500 | Msa1459260:intron | 45.0% |
| AAGGTCATGCCAGGATCAAA+AGG | - | tig0040164:11490-11509 | Msa1459260:intron | 45.0% | |
| GACACATCCTCGTATATGAC+AGG | + | tig0040164:11561-11580 | Msa1459260:intergenic | 45.0% | |
| ! | GAGGATGTGTCTTTGGAAAG+AGG | - | tig0040164:11570-11589 | Msa1459260:intron | 45.0% |
| ! | AGGTTCTTTCTTGGTGCAAC+AGG | - | tig0040164:11590-11609 | Msa1459260:intron | 45.0% |
| CTGTAGCTTCAGCAGATCAA+GGG | + | tig0040164:11779-11798 | Msa1459260:intergenic | 45.0% | |
| TTCACAACTTGGAGCAGTCT+TGG | - | tig0040164:11983-12002 | Msa1459260:intron | 45.0% | |
| TCACAACTTGGAGCAGTCTT+GGG | - | tig0040164:11984-12003 | Msa1459260:intron | 45.0% | |
| ! | GGTTGGTGCTTAGAGAAAGA+TGG | - | tig0040164:12080-12099 | Msa1459260:intron | 45.0% |
| TAGCCGCTATTTGACAACAC+TGG | + | tig0040164:12218-12237 | Msa1459260:intergenic | 45.0% | |
| CTGTCAAATAGCAGCTATGG+TGG | - | tig0040164:12307-12326 | Msa1459260:intron | 45.0% | |
| GTGTTGTCAATAGCTGATCG+TGG | + | tig0040164:12379-12398 | Msa1459260:intergenic | 45.0% | |
| GTATTCGCCTTTATGGTGTC+CGG | - | tig0040164:12621-12640 | Msa1459260:CDS | 45.0% | |
| AAGGACCATTGTTCAAACCC+CGG | + | tig0040164:12766-12785 | Msa1459260:intergenic | 45.0% | |
| ATGAAACGGGGAAGAGCAAA+AGG | + | tig0040164:12857-12876 | Msa1459260:intergenic | 45.0% | |
| GGTTCAGGATGAATGAAACG+GGG | + | tig0040164:12869-12888 | Msa1459260:intergenic | 45.0% | |
| ! | AATTTTCTGCAGCCGAGCAA+TGG | - | tig0040164:12974-12993 | Msa1459260:intron | 45.0% |
| ! | ATTTTCTGCAGCCGAGCAAT+GGG | - | tig0040164:12975-12994 | Msa1459260:intron | 45.0% |
| AACTGCTATCACCCATTGCT+CGG | + | tig0040164:12989-13008 | Msa1459260:intergenic | 45.0% | |
| GTTGCCAAAGGATGATATGG+AGG | - | tig0040164:13052-13071 | Msa1459260:intron | 45.0% | |
| CACTAGAGCCAAGAAAAGCA+AGG | + | tig0040164:13092-13111 | Msa1459260:intergenic | 45.0% | |
| !! | TAGAATGATGGCTTGGTGAC+TGG | - | tig0040164:13797-13816 | Msa1459260:intron | 45.0% |
| !! | AGAATGATGGCTTGGTGACT+GGG | - | tig0040164:13798-13817 | Msa1459260:intron | 45.0% |
| TCAGTATTATGCTGGGACTG+GGG | + | tig0040164:13867-13886 | Msa1459260:intergenic | 45.0% | |
| GTCAGTATTATGCTGGGACT+GGG | + | tig0040164:13868-13887 | Msa1459260:intergenic | 45.0% | |
| TGTCAGTATTATGCTGGGAC+TGG | + | tig0040164:13869-13888 | Msa1459260:intergenic | 45.0% | |
| GTCCCAGCATAATACTGACA+TGG | - | tig0040164:13869-13888 | Msa1459260:intron | 45.0% | |
| GGTCCATGTCAGTATTATGC+TGG | + | tig0040164:13875-13894 | Msa1459260:intergenic | 45.0% | |
| TCTAACGTGGAAATGTGCGT+GGG | + | tig0040164:14280-14299 | Msa1459260:intergenic | 45.0% | |
| TTCTAACGTGGAAATGTGCG+TGG | + | tig0040164:14281-14300 | Msa1459260:intergenic | 45.0% | |
| ! | TGTCATTTGGACAGAAGGCA+TGG | - | tig0040164:14303-14322 | Msa1459260:intron | 45.0% |
| !! | ACTTGCAAAAGTAGCGGATG+TGG | - | tig0040164:14437-14456 | Msa1459260:CDS | 45.0% |
| CGGATGTGGACAAAAGTCTA+GGG | - | tig0040164:14451-14470 | Msa1459260:CDS | 45.0% | |
| GGATGTGGACAAAAGTCTAG+GGG | - | tig0040164:14452-14471 | Msa1459260:CDS | 45.0% | |
| TCAAGAAGCCATAGACTTGC+TGG | - | tig0040164:14500-14519 | Msa1459260:CDS | 45.0% | |
| TGATAGCCGCTATAGAAGGA+TGG | + | tig0040164:14792-14811 | Msa1459260:intergenic | 45.0% | |
| !!! | TATCGGCCTTTTGGCTTCTT+AGG | + | tig0040164:14826-14845 | Msa1459260:intergenic | 45.0% |
| ATACACGCCTTGCTAGCAAA+AGG | - | tig0040164:14881-14900 | Msa1459260:intron | 45.0% | |
| TACTAGAACTTTCCGGTGAC+CGG | - | tig0040164:15101-15120 | Msa1459260:intron | 45.0% | |
| CAGCTCCTTCAGTACCTTAT+TGG | - | tig0040164:15133-15152 | Msa1459260:intron | 45.0% | |
| GTTGCCCTTATGCACCAATA+AGG | + | tig0040164:15150-15169 | Msa1459260:intergenic | 45.0% | |
| ! | TGTGTGATGATGCGGTTGGT+TGG | + | tig0040164:10170-10189 | None:intergenic | 50.0% |
| ! | GGATTGTGTGATGATGCGGT+TGG | + | tig0040164:10174-10193 | None:intergenic | 50.0% |
| ! | TGTCTCACCAAAGTGTCCGT+TGG | - | tig0040164:11170-11189 | Msa1459260:CDS | 50.0% |
| ! | GTCTCACCAAAGTGTCCGTT+GGG | - | tig0040164:11171-11190 | Msa1459260:CDS | 50.0% |
| !! | TGGTGTCGAATAGAAGTGCC+TGG | + | tig0040164:11245-11264 | Msa1459260:intergenic | 50.0% |
| AGACAATGGCGAAGAAGCAG+CGG | - | tig0040164:11524-11543 | Msa1459260:intron | 50.0% | |
| GCTGTAGCTTCAGCAGATCA+AGG | + | tig0040164:11780-11799 | Msa1459260:intergenic | 50.0% | |
| TGCGAACGTCTTCTGCACAT+AGG | + | tig0040164:11926-11945 | Msa1459260:intergenic | 50.0% | |
| GGTGACTGCTGGTAAGTTGT+TGG | - | tig0040164:12014-12033 | Msa1459260:intron | 50.0% | |
| CATTGTTCAAACCCCGGTGA+AGG | + | tig0040164:12760-12779 | Msa1459260:intergenic | 50.0% | |
| CTTCACCGGGGTTTGAACAA+TGG | - | tig0040164:12758-12777 | Msa1459260:intron | 50.0% | |
| ACGGGGAAGAGCAAAAGGTA+TGG | + | tig0040164:12852-12871 | Msa1459260:intergenic | 50.0% | |
| AGTACGACCTTGCAGCTTGA+AGG | + | tig0040164:13251-13270 | Msa1459260:intergenic | 50.0% | |
| GAGGGGATAGAATGATGGCT+TGG | - | tig0040164:13790-13809 | Msa1459260:intron | 50.0% | |
| !! | GAATGATGGCTTGGTGACTG+GGG | - | tig0040164:13799-13818 | Msa1459260:intron | 50.0% |
| AGCAGACTGATAAGGAGGTG+AGG | - | tig0040164:13834-13853 | Msa1459260:intron | 50.0% | |
| GCAGACTGATAAGGAGGTGA+GGG | - | tig0040164:13835-13854 | Msa1459260:intron | 50.0% | |
| GCGGATGTGGACAAAAGTCT+AGG | - | tig0040164:14450-14469 | Msa1459260:CDS | 50.0% | |
| ! | AAGCCAGTGGACTTGAGCAA+CGG | - | tig0040164:14544-14563 | Msa1459260:CDS | 50.0% |
| ! | GGTCACCGGAAAGTTCTAGT+AGG | + | tig0040164:15102-15121 | Msa1459260:intergenic | 50.0% |
| GAGCCGGATGCTGATCTTCA+AGG | - | tig0040164:11447-11466 | Msa1459260:intron | 55.0% | |
| ! | TCTTGGTGCAACAGGCCATG+AGG | - | tig0040164:11598-11617 | Msa1459260:intron | 55.0% |
| ! | CTTGGTGCAACAGGCCATGA+GGG | - | tig0040164:11599-11618 | Msa1459260:intron | 55.0% |
| GGAGCAGTCTTGGGTATGCT+TGG | - | tig0040164:11993-12012 | Msa1459260:intron | 55.0% | |
| ! | TGGGTATGCTTGGTGACTGC+TGG | - | tig0040164:12003-12022 | Msa1459260:intron | 55.0% |
| ATGGGGACCTTCAAGCTGCA+AGG | - | tig0040164:13241-13260 | Msa1459260:intron | 55.0% | |
| CGAAACAGGGCCTCAGTATG+TGG | - | tig0040164:13678-13697 | Msa1459260:CDS | 55.0% | |
| GACAAGGTTGGGCAGCTTCT+TGG | - | tig0040164:13917-13936 | Msa1459260:intron | 55.0% | |
| AACGTGGAAATGTGCGTGGG+TGG | + | tig0040164:14277-14296 | Msa1459260:intergenic | 55.0% | |
| ! | AGCCAGTGGACTTGAGCAAC+GGG | - | tig0040164:14545-14564 | Msa1459260:CDS | 55.0% |
| TACCCGTTGCTCAAGTCCAC+TGG | + | tig0040164:14550-14569 | Msa1459260:intergenic | 55.0% | |
| GAAGGAGCTGTGATCCTCTC+CGG | + | tig0040164:15123-15142 | Msa1459260:intergenic | 55.0% | |
| !! | TGATGGCTTGGTGACTGGGG+TGG | - | tig0040164:13802-13821 | Msa1459260:intron | 60.0% |
| !! | GATGGCTTGGTGACTGGGGT+GGG | - | tig0040164:13803-13822 | Msa1459260:intron | 60.0% |
| CTACGGGTGCCTCTGATCAG+TGG | + | tig0040164:14125-14144 | Msa1459260:intergenic | 60.0% | |
| GAACTTTCCGGTGACCGGAG+AGG | - | tig0040164:15106-15125 | Msa1459260:intron | 60.0% | |
| CTGTGATCCTCTCCGGTCAC+CGG | + | tig0040164:15116-15135 | Msa1459260:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040164 | gene | 10164 | 15489 | 10164 | ID=Msa1459260;Name=Msa1459260 |
| tig0040164 | mRNA | 10164 | 15489 | 10164 | ID=Msa1459260-mRNA-1;Parent=Msa1459260;Name=Msa1459260-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.87|0.88|1|0.75|0.66|9|595|396 |
| tig0040164 | exon | 10164 | 10207 | 10164 | ID=Msa1459260-mRNA-1:exon:22189;Parent=Msa1459260-mRNA-1 |
| tig0040164 | exon | 10228 | 10850 | 10228 | ID=Msa1459260-mRNA-1:exon:22188;Parent=Msa1459260-mRNA-1 |
| tig0040164 | exon | 11087 | 11236 | 11087 | ID=Msa1459260-mRNA-1:exon:22187;Parent=Msa1459260-mRNA-1 |
| tig0040164 | exon | 12321 | 12467 | 12321 | ID=Msa1459260-mRNA-1:exon:22186;Parent=Msa1459260-mRNA-1 |
| tig0040164 | exon | 12580 | 12667 | 12580 | ID=Msa1459260-mRNA-1:exon:22185;Parent=Msa1459260-mRNA-1 |
| tig0040164 | exon | 13629 | 13774 | 13629 | ID=Msa1459260-mRNA-1:exon:22184;Parent=Msa1459260-mRNA-1 |
| tig0040164 | exon | 14093 | 14264 | 14093 | ID=Msa1459260-mRNA-1:exon:22183;Parent=Msa1459260-mRNA-1 |
| tig0040164 | exon | 14355 | 14642 | 14355 | ID=Msa1459260-mRNA-1:exon:22182;Parent=Msa1459260-mRNA-1 |
| tig0040164 | exon | 15362 | 15489 | 15362 | ID=Msa1459260-mRNA-1:exon:22181;Parent=Msa1459260-mRNA-1 |
| tig0040164 | CDS | 15362 | 15489 | 15362 | ID=Msa1459260-mRNA-1:cds;Parent=Msa1459260-mRNA-1 |
| tig0040164 | CDS | 14355 | 14642 | 14355 | ID=Msa1459260-mRNA-1:cds;Parent=Msa1459260-mRNA-1 |
| tig0040164 | CDS | 14093 | 14264 | 14093 | ID=Msa1459260-mRNA-1:cds;Parent=Msa1459260-mRNA-1 |
| tig0040164 | CDS | 13629 | 13774 | 13629 | ID=Msa1459260-mRNA-1:cds;Parent=Msa1459260-mRNA-1 |
| tig0040164 | CDS | 12580 | 12667 | 12580 | ID=Msa1459260-mRNA-1:cds;Parent=Msa1459260-mRNA-1 |
| tig0040164 | CDS | 12321 | 12467 | 12321 | ID=Msa1459260-mRNA-1:cds;Parent=Msa1459260-mRNA-1 |
| tig0040164 | CDS | 11087 | 11236 | 11087 | ID=Msa1459260-mRNA-1:cds;Parent=Msa1459260-mRNA-1 |
| tig0040164 | CDS | 10779 | 10850 | 10779 | ID=Msa1459260-mRNA-1:cds;Parent=Msa1459260-mRNA-1 |
| tig0040164 | three_prime_UTR | 10228 | 10778 | 10228 | ID=Msa1459260-mRNA-1:three_prime_utr;Parent=Msa1459260-mRNA-1 |
| tig0040164 | three_prime_UTR | 10164 | 10207 | 10164 | ID=Msa1459260-mRNA-1:three_prime_utr;Parent=Msa1459260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
