AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0311330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0311330 MtrunA17_Chr2g0280091 93.492 461 29 1 10 469 1 461 0.0 871
Msa0311330 MtrunA17_Chr4g0049371 72.400 500 114 2 16 503 36 523 0.0 740
Msa0311330 MtrunA17_Chr5g0411431 62.777 497 158 4 16 498 5 488 0.0 616
Msa0311330 MtrunA17_Chr2g0280111 70.238 252 26 2 262 513 13 215 8.50e-115 338
Msa0311330 MtrunA17_Chr2g0280101 80.214 187 18 2 43 214 1 183 3.07e-97 293
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0311330 AT2G22730.3 61.829 503 161 7 17 495 38 533 0.0 608
Msa0311330 AT5G64500.1 60.750 507 149 5 6 499 14 483 0.0 607
Msa0311330 AT2G22730.2 63.713 474 143 6 17 468 38 504 0.0 594
Msa0311330 AT2G22730.6 59.717 494 160 5 17 495 38 507 0.0 585
Msa0311330 AT2G22730.1 61.505 465 142 4 17 468 38 478 0.0 570
Msa0311330 AT5G65687.1 54.508 488 184 7 5 476 2 467 0.0 525
Msa0311330 AT2G22730.7 63.980 397 133 2 78 468 1 393 0.0 515
Msa0311330 AT2G22730.5 60.644 404 130 6 17 398 38 434 2.07e-163 474
Msa0311330 AT2G22730.4 56.742 356 117 4 17 359 38 369 1.06e-135 398

Find 120 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTACCAAATGCATTTA+AGG 0.024228 2_4:-6158050 Msa0311330:intron
ACTGATTCAGATTTGGTATT+TGG 0.129701 2_4:-6158142 Msa0311330:CDS
ATGCTTCCATTTGCTATTTC+AGG 0.131188 2_4:-6159222 Msa0311330:CDS
CTTAGGTGCTTACTCATATT+GGG 0.163614 2_4:-6158380 Msa0311330:CDS
TTGGTTGGCGTTATGCATTC+TGG 0.184635 2_4:-6159260 Msa0311330:CDS
TCAATTCACAATCAAAATTA+TGG 0.193464 2_4:+6155970 None:intergenic
GATTAATTTGTTAAACTATT+TGG 0.194774 2_4:-6161254 Msa0311330:CDS
GTAAATCCATTTAGACTTAT+AGG 0.204179 2_4:-6160078 Msa0311330:CDS
TCCCACCTTGCTTAATTAAA+AGG 0.205443 2_4:+6156200 None:intergenic
CTCTCAGTGACAACATTTCT+TGG 0.208157 2_4:-6157569 Msa0311330:CDS
GTTTATGTTATCAATGTTCT+AGG 0.219911 2_4:-6158638 Msa0311330:intron
CCAACTCCTATAAGTCTAAA+TGG 0.221380 2_4:+6160072 None:intergenic
TCTTAGGTGCTTACTCATAT+TGG 0.225768 2_4:-6158381 Msa0311330:CDS
ACTGTTGCCATTCATCTCTT+TGG 0.243752 2_4:-6157085 Msa0311330:CDS
TATGCACTTGGCTATGTTTA+TGG 0.253229 2_4:-6159438 Msa0311330:CDS
TCTAACTTGGATTGGTCATT+TGG 0.256366 2_4:+6158858 None:intergenic
TCTAACAACTATACTGTTTC+CGG 0.268061 2_4:-6156780 Msa0311330:CDS
TAACAGATAGGAAGTAATTT+TGG 0.268109 2_4:-6159279 Msa0311330:intron
ATTCACATTTCTGCATAAAA+AGG 0.278960 2_4:+6157526 None:intergenic
TGTTTCCGGCAGCTGGAATA+TGG 0.293552 2_4:-6156766 Msa0311330:CDS
CCATGATTCCCACAACTTCA+TGG 0.295748 2_4:-6161568 Msa0311330:CDS
ATAGCGTACAACTTTGTCTT+AGG 0.313540 2_4:-6158397 Msa0311330:CDS
ATAAATATTGTAGATGGCTT+TGG 0.323396 2_4:+6158354 None:intergenic
ATAGCTAGCAATGGTGTTAA+TGG 0.334552 2_4:-6161220 Msa0311330:CDS
TGTTCCTGTTGATTTGATAA+AGG 0.334594 2_4:-6159090 Msa0311330:CDS
TAAATATTGTAGATGGCTTT+GGG 0.343761 2_4:+6158355 None:intergenic
CTAACTTGGATTGGTCATTT+GGG 0.345914 2_4:+6158859 None:intergenic
GTGCCTTCCTCACCCCTTGT+TGG 0.349853 2_4:-6157058 Msa0311330:CDS
TCTCAGTGACAACATTTCTT+GGG 0.352146 2_4:-6157568 Msa0311330:CDS
TGACAATGCCCCGGCTTCTC+TGG 0.352641 2_4:-6159787 Msa0311330:intron
TTGGCAGACTGATTCAGATT+TGG 0.357099 2_4:-6158149 Msa0311330:intron
TTAGTTATACAATACCTCTT+TGG 0.358595 2_4:+6161539 None:intergenic
ATACCAACCTTAAATGCATT+TGG 0.359686 2_4:+6158043 None:intergenic
GGGAATCATGGATGACACTA+TGG 0.383133 2_4:+6161580 None:intergenic
TGAGCTAGAGAGGCAAATAT+TGG 0.393358 2_4:+6160584 None:intergenic
GTAGACATGGCCATGGATAA+AGG 0.398104 2_4:+6157106 None:intergenic
TACGATTGTATGTGGAATAG+TGG 0.398342 2_4:-6158113 Msa0311330:CDS
TGGCTATGTTTATGGTGGTT+TGG 0.400561 2_4:-6159430 Msa0311330:intron
AACATCCAAAGTCTTGTTCA+TGG 0.403880 2_4:-6161609 Msa0311330:CDS
GGAATAGTGGGCACATTAGC+TGG 0.404748 2_4:-6158100 Msa0311330:CDS
CCATTTAGACTTATAGGAGT+TGG 0.430523 2_4:-6160072 Msa0311330:CDS
TGTGCCTTTATCAAATCAAC+AGG 0.433163 2_4:+6159086 None:intergenic
ACCCCTTGTTGGAGTTATCC+AGG 0.434851 2_4:-6157047 Msa0311330:intron
ACATCTAGTGTTAGATAGAA+AGG 0.436620 2_4:-6161675 Msa0311330:five_prime_UTR
CATGTTATAAATATTGTAGA+TGG 0.438210 2_4:+6158348 None:intergenic
TTGTTAAACTATTTGGATCA+AGG 0.438250 2_4:-6161247 Msa0311330:CDS
TTGTGCTCACTACATGGCTC+CGG 0.444852 2_4:-6156276 Msa0311330:three_prime_UTR
TGTGTATGCTATAAGTTGGC+AGG 0.444944 2_4:+6156234 None:intergenic
ATTAGCTGGAGGATTTGTTC+TGG 0.444984 2_4:-6158086 Msa0311330:CDS
TGGTTGGCGTTATGCATTCT+GGG 0.445125 2_4:-6159259 Msa0311330:CDS
ACTATACTGTTTCCGGCAGC+TGG 0.445174 2_4:-6156773 Msa0311330:CDS
GCAGCTGGAATATGGTTTAT+CGG 0.448792 2_4:-6156758 Msa0311330:intron
ATGTGATTAACAGGTGTTGC+GGG 0.459679 2_4:+6156087 None:intergenic
AAAAGCAAACCAGAGAAGCC+GGG 0.461774 2_4:+6159778 None:intergenic
CTGTATAGGCTGGTTGGTGT+TGG 0.467793 2_4:-6159849 Msa0311330:intron
TCTGTACCTTTCAACTGTAA+AGG 0.468312 2_4:+6159186 None:intergenic
GATTCAGATTTGGTATTTGG+AGG 0.468406 2_4:-6158139 Msa0311330:CDS
CCATGAAGTTGTGGGAATCA+TGG 0.468969 2_4:+6161568 None:intergenic
AATGGTGTTAATGGAAGTAC+AGG 0.469707 2_4:-6161211 Msa0311330:CDS
ATTATTCTGTATAGGCTGGT+TGG 0.470521 2_4:-6159855 Msa0311330:intron
TGCTTAATTAAAAGGAGTAC+AGG 0.474711 2_4:+6156208 None:intergenic
TGCAGGATAGTATTAACAAC+TGG 0.476380 2_4:-6156820 Msa0311330:intron
ATGGATAAAGGCCTCAAACT+TGG 0.478763 2_4:+6157118 None:intergenic
GGAGGAATTACGATTGTATG+TGG 0.483869 2_4:-6158121 Msa0311330:CDS
GCATCAAGTGTCAAAGGTTG+AGG 0.484312 2_4:-6156411 Msa0311330:CDS
AGGAATATTTGTGCATCGTA+TGG 0.485470 2_4:-6156456 Msa0311330:CDS
TTACATGCGACAGACAGAAA+TGG 0.486623 2_4:+6159993 None:intergenic
AACCTTAAATGCATTTGGTA+AGG 0.488323 2_4:+6158048 None:intergenic
GTTTGTGTTCTAACTTGGAT+TGG 0.490421 2_4:+6158850 None:intergenic
TTCGCTTTGTGCTCACTACA+TGG 0.501729 2_4:-6156282 Msa0311330:three_prime_UTR
GTACCTGACACAGTTGCATC+AGG 0.504773 2_4:-6159062 Msa0311330:CDS
ACTCCTGATGCAACTGTGTC+AGG 0.507213 2_4:+6159059 None:intergenic
GGTGTAAACCATGAAGTTGT+GGG 0.513168 2_4:+6161560 None:intergenic
ACAGTTGCATCAGGAGTTCA+TGG 0.514390 2_4:-6159053 Msa0311330:intron
TGTGCTCACTACATGGCTCC+GGG 0.518493 2_4:-6156275 Msa0311330:three_prime_UTR
AGAAAAGATCAACCCACAAA+AGG 0.519179 2_4:+6156166 None:intergenic
AAGTTTGAGGCCTTTATCCA+TGG 0.520433 2_4:-6157116 Msa0311330:CDS
ATGAAGCCTTTACAGTTGAA+AGG 0.521699 2_4:-6159192 Msa0311330:intron
ATTGTGTTAAACCAAGTTTG+AGG 0.526723 2_4:-6157129 Msa0311330:CDS
CTCAGTGACAACATTTCTTG+GGG 0.529695 2_4:-6157567 Msa0311330:CDS
GTTATGTGTATGCTATAAGT+TGG 0.532184 2_4:+6156230 None:intergenic
CAATATTCTTCAGATTGTGC+AGG 0.532390 2_4:+6156335 None:intergenic
CCGTTGCTTCAAGAGAAAAC+AGG 0.535929 2_4:-6156374 Msa0311330:CDS
TGGTTCCATGAACAAGACTT+TGG 0.542185 2_4:+6161604 None:intergenic
CACATCTCCAAAGAGATGAA+TGG 0.546684 2_4:+6157078 None:intergenic
TTAGGTGCTTACTCATATTG+GGG 0.554059 2_4:-6158379 Msa0311330:CDS
GATAACTCCAACAAGGGGTG+AGG 0.563977 2_4:+6157051 None:intergenic
CAGTGAGCATCAAGTGTCAA+AGG 0.565126 2_4:-6156417 Msa0311330:CDS
GACCTGGATAACTCCAACAA+GGG 0.565299 2_4:+6157045 None:intergenic
ATAAACCATATTCCAGCTGC+CGG 0.569167 2_4:+6156761 None:intergenic
ATACCATCTGGATATGCACT+TGG 0.571968 2_4:-6159450 Msa0311330:CDS
TGGTGTAAACCATGAAGTTG+TGG 0.580859 2_4:+6161559 None:intergenic
CTTCATGGTTTACACCAAAG+AGG 0.583890 2_4:-6161553 Msa0311330:intron
GTGTATGCTATAAGTTGGCA+GGG 0.584875 2_4:+6156235 None:intergenic
CATCTACAATATTTATAACA+TGG 0.588578 2_4:-6158347 Msa0311330:intron
ACGATTGTATGTGGAATAGT+GGG 0.588948 2_4:-6158112 Msa0311330:CDS
GCACTTGGCTATGTTTATGG+TGG 0.591399 2_4:-6159435 Msa0311330:CDS
TTTCATTGATGACAATGCCC+CGG 0.593463 2_4:-6159796 Msa0311330:CDS
GGCAACAGTAGACATGGCCA+TGG 0.597385 2_4:+6157099 None:intergenic
ACTCCAACAAGGGGTGAGGA+AGG 0.597722 2_4:+6157055 None:intergenic
CATCAAGTGTCAAAGGTTGA+GGG 0.597966 2_4:-6156410 Msa0311330:CDS
AAAGCAAACCAGAGAAGCCG+GGG 0.600500 2_4:+6159779 None:intergenic
TAGGAGTTGGATTGTCAATG+TGG 0.604600 2_4:-6160059 Msa0311330:CDS
TTAAGACATACATAATTCAC+CGG 0.607042 2_4:+6157151 None:intergenic
GGGGCATTGTCATCAATGAA+AGG 0.612101 2_4:+6159798 None:intergenic
TAGGCTGGTTGGTGTTGGTG+AGG 0.618424 2_4:-6159844 Msa0311330:CDS
ATGAATGGCAACAGTAGACA+TGG 0.618796 2_4:+6157093 None:intergenic
GGAATCATGGATGACACTAT+GGG 0.627440 2_4:+6161581 None:intergenic
TAATTACCTCTGAGCTAGAG+AGG 0.634819 2_4:+6160574 None:intergenic
CAAGGAGCAATAGCTAGCAA+TGG 0.636477 2_4:-6161229 Msa0311330:CDS
TGACCTGGATAACTCCAACA+AGG 0.639985 2_4:+6157044 None:intergenic
GCATTGTCATCAATGAAAGG+TGG 0.643797 2_4:+6159801 None:intergenic
TAGCCAAGTGCATATCCAGA+TGG 0.650333 2_4:+6159447 None:intergenic
ACCTGGATAACTCCAACAAG+GGG 0.661832 2_4:+6157046 None:intergenic
TATGTGATTAACAGGTGTTG+CGG 0.671132 2_4:+6156086 None:intergenic
ATCATGGATGACACTATGGG+TGG 0.677731 2_4:+6161584 None:intergenic
GTGTGTATCAGAAAACAACA+TGG 0.704469 2_4:-6159494 Msa0311330:intron
ATAGTGGGCACATTAGCTGG+AGG 0.712208 2_4:-6158097 Msa0311330:CDS
TATTTGCCTCTCTAGCTCAG+AGG 0.719961 2_4:-6160580 Msa0311330:intron
ATAGAAGGAAAGTACCTGAG+TGG 0.726628 2_4:+6157460 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTACTTTTATAACTTTTT+AGG - chr2_4:6159782-6159801 Msa0311330:intron 10.0%
!!! GATTAATTTGTTAAACTATT+TGG - chr2_4:6156526-6156545 Msa0311330:intron 15.0%
!! GTATATCTAATAATAAGAAT+AGG + chr2_4:6157264-6157283 None:intergenic 15.0%
!! TTATGTAAAGAAATTTACAA+GGG + chr2_4:6158031-6158050 None:intergenic 15.0%
!! ATTATGTAAAGAAATTTACA+AGG + chr2_4:6158032-6158051 None:intergenic 15.0%
!! TGTATAAAATAAAACATGTT+TGG - chr2_4:6159540-6159559 Msa0311330:intron 15.0%
!!! ATAAACGTTTTATCCAATTT+TGG - chr2_4:6156370-6156389 Msa0311330:CDS 20.0%
!!! TAAACGTTTTATCCAATTTT+GGG - chr2_4:6156371-6156390 Msa0311330:CDS 20.0%
!!! AATGTTCTTTTTTGTTTTGT+AGG - chr2_4:6156483-6156502 Msa0311330:intron 20.0%
!! AAATATATGAATTGTGAGAA+AGG + chr2_4:6157676-6157695 None:intergenic 20.0%
!! AATCATTAGTACTAAACTTA+TGG - chr2_4:6157869-6157888 Msa0311330:intron 20.0%
!! GAAATCAATAATTGGAAATA+TGG + chr2_4:6158968-6158987 None:intergenic 20.0%
!!! GTCTAAGATTTATAATTTAG+TGG - chr2_4:6159002-6159021 Msa0311330:intron 20.0%
!! CATGTTATAAATATTGTAGA+TGG + chr2_4:6159435-6159454 None:intergenic 20.0%
!! CATCTACAATATTTATAACA+TGG - chr2_4:6159433-6159452 Msa0311330:CDS 20.0%
!!! AAAGGTATATTAATGCATAA+GGG + chr2_4:6159483-6159502 None:intergenic 20.0%
!!! TAAAGGTATATTAATGCATA+AGG + chr2_4:6159484-6159503 None:intergenic 20.0%
!! TTAATATACCTTTACTATCA+TGG - chr2_4:6159490-6159509 Msa0311330:intron 20.0%
!! TTGGTATTCAAATTAAAGAT+GGG - chr2_4:6159753-6159772 Msa0311330:intron 20.0%
!! TTTAAAGATTTCTTTACTTG+AGG - chr2_4:6159923-6159942 Msa0311330:intron 20.0%
!!! TATTGATTGAATTGTTGTAA+TGG - chr2_4:6160084-6160103 Msa0311330:intron 20.0%
!! TTGTTCATTTACTAGTAAAA+CGG - chr2_4:6161054-6161073 Msa0311330:intron 20.0%
!!! AATCATCGTATTTTTATACA+TGG - chr2_4:6161238-6161257 Msa0311330:CDS 20.0%
!!! ATTGATTTTTCTTTAGCAAA+AGG - chr2_4:6161464-6161483 Msa0311330:intron 20.0%
!!! ACATTTTTTATGTGATTAAC+AGG + chr2_4:6161705-6161724 None:intergenic 20.0%
!! TTCAATTCATGTCAAAAATT+TGG - chr2_4:6161753-6161772 Msa0311330:five_prime_UTR 20.0%
!!! TTGAAAAACTTTGAGTTGAA+TGG + chr2_4:6156077-6156096 None:intergenic 25.0%
! TTAGTTATACAATACCTCTT+TGG + chr2_4:6156244-6156263 None:intergenic 25.0%
!! TTCATTCTTCTTTGCATTTT+TGG - chr2_4:6156333-6156352 Msa0311330:exon 25.0%
! AATTGAAACAAACCCAAAAT+TGG + chr2_4:6156386-6156405 None:intergenic 25.0%
!!! TTTTGGGTTTGTTTCAATTT+TGG - chr2_4:6156387-6156406 Msa0311330:CDS 25.0%
!!! TTTTTGTTTTGTAGGTTACT+TGG - chr2_4:6156491-6156510 Msa0311330:intron 25.0%
! TTGTTAAACTATTTGGATCA+AGG - chr2_4:6156533-6156552 Msa0311330:intron 25.0%
! AACAAGAAATCAAGAACATA+GGG - chr2_4:6156634-6156653 Msa0311330:intron 25.0%
! CGTATAAATTCAATGCTTTA+AGG - chr2_4:6156867-6156886 Msa0311330:intron 25.0%
!!! AATTCAATGCTTTAAGGTTT+TGG - chr2_4:6156873-6156892 Msa0311330:intron 25.0%
!!! ATTCAATGCTTTAAGGTTTT+GGG - chr2_4:6156874-6156893 Msa0311330:intron 25.0%
! ATGTTACACTATCAATGTTA+GGG + chr2_4:6157040-6157059 None:intergenic 25.0%
!!! AACTTGAACAATTTTGAAGA+TGG - chr2_4:6157130-6157149 Msa0311330:CDS 25.0%
!!! AGTTTTATCATCTGCTTTTA+TGG - chr2_4:6157153-6157172 Msa0311330:CDS 25.0%
! AGAATAGGTTTCATATTGAT+TGG + chr2_4:6157249-6157268 None:intergenic 25.0%
! ATTTGCAACTTATCTTATGA+AGG + chr2_4:6157318-6157337 None:intergenic 25.0%
! AATTTGATATCATTGCTCTA+TGG + chr2_4:6157379-6157398 None:intergenic 25.0%
! AGCAAAATTACTACAATAGT+TGG - chr2_4:6157505-6157524 Msa0311330:CDS 25.0%
! GTAAATCCATTTAGACTTAT+AGG - chr2_4:6157702-6157721 Msa0311330:intron 25.0%
! TTGAAAATCTAATCAAGCTT+AGG - chr2_4:6158057-6158076 Msa0311330:CDS 25.0%
! TAGTATTTAGTATTAGACAG+TGG + chr2_4:6158399-6158418 None:intergenic 25.0%
! TACTAAATATCCATATGTAC+TGG - chr2_4:6158414-6158433 Msa0311330:intron 25.0%
!! TAACAGATAGGAAGTAATTT+TGG - chr2_4:6158501-6158520 Msa0311330:intron 25.0%
! AAAAATCCTGAAATAGCAAA+TGG + chr2_4:6158567-6158586 None:intergenic 25.0%
! CGATACAAGAAATCAATAAT+TGG + chr2_4:6158976-6158995 None:intergenic 25.0%
!!! ATCTGACTGATTCTTATTTT+AGG - chr2_4:6159044-6159063 Msa0311330:intron 25.0%
! GTTTATGTTATCAATGTTCT+AGG - chr2_4:6159142-6159161 Msa0311330:intron 25.0%
! AAATAGATATTTAAGTCGTG+GGG + chr2_4:6159354-6159373 None:intergenic 25.0%
! CAAATAGATATTTAAGTCGT+GGG + chr2_4:6159355-6159374 None:intergenic 25.0%
! ACAAATAGATATTTAAGTCG+TGG + chr2_4:6159356-6159375 None:intergenic 25.0%
! CGACTTAAATATCTATTTGT+AGG - chr2_4:6159356-6159375 Msa0311330:intron 25.0%
! TAAATATTGTAGATGGCTTT+GGG + chr2_4:6159428-6159447 None:intergenic 25.0%
! ATAAATATTGTAGATGGCTT+TGG + chr2_4:6159429-6159448 None:intergenic 25.0%
! ACAATATTTATAACATGGTG+AGG - chr2_4:6159438-6159457 Msa0311330:CDS 25.0%
!! ATGTTAAACTTCGCTTATTT+TGG - chr2_4:6159612-6159631 Msa0311330:intron 25.0%
! GTTGGTATTCAAATTAAAGA+TGG - chr2_4:6159752-6159771 Msa0311330:intron 25.0%
! ATCAATATAAAGCTACATGT+AGG + chr2_4:6160071-6160090 None:intergenic 25.0%
! ATTCACATTTCTGCATAAAA+AGG + chr2_4:6160257-6160276 None:intergenic 25.0%
!! TTTTTATGCAGAAATGTGAA+TGG - chr2_4:6160256-6160275 Msa0311330:intron 25.0%
!! TTTCTTGTTCTTTTCTCTAT+TGG - chr2_4:6160280-6160299 Msa0311330:intron 25.0%
! TTCTTGTCAAGAATTTAACT+AGG + chr2_4:6160468-6160487 None:intergenic 25.0%
! CATCTAAATTTCAAATGTAG+AGG + chr2_4:6160517-6160536 None:intergenic 25.0%
! TTAAGACATACATAATTCAC+CGG + chr2_4:6160632-6160651 None:intergenic 25.0%
!! TCGTGATTTTTGATACATTA+TGG - chr2_4:6160934-6160953 Msa0311330:intron 25.0%
! AGATAAACAAAAATGTTCAG+TGG - chr2_4:6161651-6161670 Msa0311330:five_prime_UTR 25.0%
ACATCTAGTGTTAGATAGAA+AGG - chr2_4:6156105-6156124 Msa0311330:three_prime_UTR 30.0%
!!! TGCATTTTTGGTATATCATG+TGG - chr2_4:6156345-6156364 Msa0311330:CDS 30.0%
!!! GCATTTTTGGTATATCATGT+GGG - chr2_4:6156346-6156365 Msa0311330:CDS 30.0%
!!! CATTTTTGGTATATCATGTG+GGG - chr2_4:6156347-6156366 Msa0311330:CDS 30.0%
!! TTTCTTGTTCTGAGAAAAGA+AGG + chr2_4:6156623-6156642 None:intergenic 30.0%
GAACAAGAAATCAAGAACAT+AGG - chr2_4:6156633-6156652 Msa0311330:intron 30.0%
AACAACCTAGTGATCATATT+TGG - chr2_4:6156675-6156694 Msa0311330:intron 30.0%
CTAGTGATCATATTTGGTTA+CGG - chr2_4:6156681-6156700 Msa0311330:intron 30.0%
TAGTGATCATATTTGGTTAC+GGG - chr2_4:6156682-6156701 Msa0311330:intron 30.0%
TACTTAGTTGGACGAAAAAT+AGG + chr2_4:6156708-6156727 None:intergenic 30.0%
TATCTTCCGTCCAATTATAA+TGG - chr2_4:6156990-6157009 Msa0311330:intron 30.0%
ATCTTCCGTCCAATTATAAT+GGG - chr2_4:6156991-6157010 Msa0311330:intron 30.0%
CATGTTACACTATCAATGTT+AGG + chr2_4:6157041-6157060 None:intergenic 30.0%
!! TTATCATCTGCTTTTATGGT+TGG - chr2_4:6157157-6157176 Msa0311330:CDS 30.0%
! CATATTGATTGGAACATGAA+TGG + chr2_4:6157238-6157257 None:intergenic 30.0%
TGCAATTGAATGTGTATTTG+AGG - chr2_4:6157419-6157438 Msa0311330:intron 30.0%
ATGTAAGAACTTCAGTGTAA+TGG + chr2_4:6157554-6157573 None:intergenic 30.0%
GAAAGAAAAACCACAAAAGA+AGG + chr2_4:6157757-6157776 None:intergenic 30.0%
! GTGGTTTTTCTTTCAATTTC+TGG - chr2_4:6157763-6157782 Msa0311330:intron 30.0%
ATGCCTTCATTATTCTGTAT+AGG - chr2_4:6157917-6157936 Msa0311330:intron 30.0%
TTGAAATGAACGAAGCAAAA+TGG + chr2_4:6158188-6158207 None:intergenic 30.0%
CAACAATTGACAAATGACAT+TGG + chr2_4:6158215-6158234 None:intergenic 30.0%
! TTTTACATGTGTATACCATC+TGG - chr2_4:6158318-6158337 Msa0311330:intron 30.0%
! GATTCTTTTTCCAGTACATA+TGG + chr2_4:6158427-6158446 None:intergenic 30.0%
CTATCTGTTAATACACACAA+AGG + chr2_4:6158491-6158510 None:intergenic 30.0%
CTTTGTGTGTATTAACAGAT+AGG - chr2_4:6158489-6158508 Msa0311330:intron 30.0%
!! AGATAGGAAGTAATTTTGGT+TGG - chr2_4:6158505-6158524 Msa0311330:intron 30.0%
! GGTACAGATTTTTCTTGAAT+TGG - chr2_4:6158609-6158628 Msa0311330:intron 30.0%
!! TGTTCCTGTTGATTTGATAA+AGG - chr2_4:6158690-6158709 Msa0311330:CDS 30.0%
TTAAACCAGAAATGAGTATC+AGG + chr2_4:6158775-6158794 None:intergenic 30.0%
! CAAACAAGCGAATTTTGTTA+AGG + chr2_4:6158829-6158848 None:intergenic 30.0%
! GGAAATATGGTTATTTCAGA+AGG + chr2_4:6158955-6158974 None:intergenic 30.0%
! TTTACGATTTGAAGTTCACA+GGG + chr2_4:6159276-6159295 None:intergenic 30.0%
!! TTTTACGATTTGAAGTTCAC+AGG + chr2_4:6159277-6159296 None:intergenic 30.0%
ATTAATGCATAAGGGATCAT+TGG + chr2_4:6159475-6159494 None:intergenic 30.0%
ATGAACATCCATGATAGTAA+AGG + chr2_4:6159501-6159520 None:intergenic 30.0%
ATAAAACATGTTTGGCATTC+TGG - chr2_4:6159548-6159567 Msa0311330:intron 30.0%
! ACTGATTCAGATTTGGTATT+TGG - chr2_4:6159638-6159657 Msa0311330:intron 30.0%
AACCTTAAATGCATTTGGTA+AGG + chr2_4:6159735-6159754 None:intergenic 30.0%
! TTACCAAATGCATTTAAGGT+TGG - chr2_4:6159734-6159753 Msa0311330:intron 30.0%
ATACCAACCTTAAATGCATT+TGG + chr2_4:6159740-6159759 None:intergenic 30.0%
! ATAGGGTTGTAACTTGTAAA+CGG - chr2_4:6159873-6159892 Msa0311330:intron 30.0%
GAACAATAAATTGAGCATCA+TGG - chr2_4:6159979-6159998 Msa0311330:intron 30.0%
TATTAGGAGGAAAATCTCTT+TGG + chr2_4:6160039-6160058 None:intergenic 30.0%
ATGTAGGTCTACTCAATATT+AGG + chr2_4:6160055-6160074 None:intergenic 30.0%
TGTTGTAATGGTCTAGTAAA+TGG - chr2_4:6160096-6160115 Msa0311330:intron 30.0%
ATTGTGTTAAACCAAGTTTG+AGG - chr2_4:6160651-6160670 Msa0311330:CDS 30.0%
TTTACTAAAACCTCCGTAAA+AGG + chr2_4:6160763-6160782 None:intergenic 30.0%
!! AGTTGTTGATTTCAGAAAGT+AGG - chr2_4:6160806-6160825 Msa0311330:intron 30.0%
!! GTTGTTGATTTCAGAAAGTA+GGG - chr2_4:6160807-6160826 Msa0311330:intron 30.0%
TTCGCAAGTAATGAACATTT+AGG + chr2_4:6160849-6160868 None:intergenic 30.0%
TTCATTACTTGCGAAACAAA+GGG - chr2_4:6160854-6160873 Msa0311330:intron 30.0%
! TTGATACATTATGGTAATGC+AGG - chr2_4:6160943-6160962 Msa0311330:intron 30.0%
TCTAACAACTATACTGTTTC+CGG - chr2_4:6161000-6161019 Msa0311330:intron 30.0%
TTACTAGTAAAACGGAGAAT+TGG - chr2_4:6161062-6161081 Msa0311330:intron 30.0%
CATAACAAAATGTCATGACT+TGG + chr2_4:6161194-6161213 None:intergenic 30.0%
!! GTCATGACATTTTGTTATGA+TGG - chr2_4:6161195-6161214 Msa0311330:intron 30.0%
AATGTGTATGTATGTCTTGT+AGG - chr2_4:6161304-6161323 Msa0311330:intron 30.0%
!!! GTTAGCATTTTTTTGAATCC+CGG + chr2_4:6161526-6161545 None:intergenic 30.0%
GTTATGTGTATGCTATAAGT+TGG + chr2_4:6161553-6161572 None:intergenic 30.0%
! TGCTTAATTAAAAGGAGTAC+AGG + chr2_4:6161575-6161594 None:intergenic 30.0%
!! GTACTCCTTTTAATTAAGCA+AGG - chr2_4:6161575-6161594 Msa0311330:CDS 30.0%
!! TCCTTTTAATTAAGCAAGGT+GGG - chr2_4:6161579-6161598 Msa0311330:CDS 30.0%
! ATTTAACTGTCACCTTTTGT+GGG - chr2_4:6161602-6161621 Msa0311330:CDS 30.0%
!! AACATCCAAAGTCTTGTTCA+TGG - chr2_4:6156171-6156190 Msa0311330:three_prime_UTR 35.0%
TAAGCAACACTAACAGAAGA+GGG + chr2_4:6156462-6156481 None:intergenic 35.0%
ATAAGCAACACTAACAGAAG+AGG + chr2_4:6156463-6156482 None:intergenic 35.0%
! ATAGCTAGCAATGGTGTTAA+TGG - chr2_4:6156560-6156579 Msa0311330:intron 35.0%
! AATGGTGTTAATGGAAGTAC+AGG - chr2_4:6156569-6156588 Msa0311330:intron 35.0%
CGTAACCAAATATGATCACT+AGG + chr2_4:6156683-6156702 None:intergenic 35.0%
! GAGCATTTGAGTTCAAATCT+GGG - chr2_4:6156754-6156773 Msa0311330:intron 35.0%
TACGACCTCTCACTTATAAA+GGG + chr2_4:6156851-6156870 None:intergenic 35.0%
ATACGACCTCTCACTTATAA+AGG + chr2_4:6156852-6156871 None:intergenic 35.0%
!!! TAAGGTTTTGGGTTAAGATG+TGG - chr2_4:6156885-6156904 Msa0311330:intron 35.0%
ATAAGTAAAGTCTAGCCAAG+TGG + chr2_4:6156973-6156992 None:intergenic 35.0%
ACATCAGCACCCATTATAAT+TGG + chr2_4:6157003-6157022 None:intergenic 35.0%
! ATATTTTTCCTGTTGTGTGC+AGG - chr2_4:6157098-6157117 Msa0311330:CDS 35.0%
! TATTTTTCCTGTTGTGTGCA+GGG - chr2_4:6157099-6157118 Msa0311330:CDS 35.0%
TTGATATCATTGCTCTATGG+TGG + chr2_4:6157376-6157395 None:intergenic 35.0%
CATTCAATTGCACATCAAGA+AGG + chr2_4:6157411-6157430 None:intergenic 35.0%
! TGTATTTGAGGCAATCTTCT+TGG - chr2_4:6157431-6157450 Msa0311330:intron 35.0%
CTGAAGTTCTTACATCTGAT+AGG - chr2_4:6157559-6157578 Msa0311330:CDS 35.0%
GCACATACAAGGAAAAAGAT+CGG + chr2_4:6157610-6157629 None:intergenic 35.0%
GTGAGAAAGGATTCTTATGT+CGG + chr2_4:6157663-6157682 None:intergenic 35.0%
CCAACTCCTATAAGTCTAAA+TGG + chr2_4:6157711-6157730 None:intergenic 35.0%
CCATTTAGACTTATAGGAGT+TGG - chr2_4:6157708-6157727 Msa0311330:intron 35.0%
CAGCCTATACAGAATAATGA+AGG + chr2_4:6157923-6157942 None:intergenic 35.0%
CTTCATTATTCTGTATAGGC+TGG - chr2_4:6157921-6157940 Msa0311330:intron 35.0%
ATTATTCTGTATAGGCTGGT+TGG - chr2_4:6157925-6157944 Msa0311330:intron 35.0%
CATAAAGAAGAAAGAACAGC+AGG + chr2_4:6158238-6158257 None:intergenic 35.0%
CTGCTGTTCTTTCTTCTTTA+TGG - chr2_4:6158236-6158255 Msa0311330:intron 35.0%
CTGTTCTTTCTTCTTTATGG+TGG - chr2_4:6158239-6158258 Msa0311330:intron 35.0%
GTGTGTATCAGAAAACAACA+TGG - chr2_4:6158286-6158305 Msa0311330:intron 35.0%
TATGCACTTGGCTATGTTTA+TGG - chr2_4:6158342-6158361 Msa0311330:intron 35.0%
TTTAGTATTAGACAGTGGCA+GGG + chr2_4:6158394-6158413 None:intergenic 35.0%
ATTTAGTATTAGACAGTGGC+AGG + chr2_4:6158395-6158414 None:intergenic 35.0%
!! ATGCTTCCATTTGCTATTTC+AGG - chr2_4:6158558-6158577 Msa0311330:intron 35.0%
ATGAAGCCTTTACAGTTGAA+AGG - chr2_4:6158588-6158607 Msa0311330:intron 35.0%
TCTGTACCTTTCAACTGTAA+AGG + chr2_4:6158597-6158616 None:intergenic 35.0%
ACCGATCGAAAACAATAACA+GGG + chr2_4:6158647-6158666 None:intergenic 35.0%
TACCGATCGAAAACAATAAC+AGG + chr2_4:6158648-6158667 None:intergenic 35.0%
AAATCAACAGGAACAAAACC+TGG + chr2_4:6158685-6158704 None:intergenic 35.0%
TGTGCCTTTATCAAATCAAC+AGG + chr2_4:6158697-6158716 None:intergenic 35.0%
! ATTAGCCTGATACTCATTTC+TGG - chr2_4:6158767-6158786 Msa0311330:intron 35.0%
! AGATGAGTCACTGTCTTTTA+AGG - chr2_4:6158879-6158898 Msa0311330:CDS 35.0%
!! CTAACTTGGATTGGTCATTT+GGG + chr2_4:6158924-6158943 None:intergenic 35.0%
!! TCTAACTTGGATTGGTCATT+TGG + chr2_4:6158925-6158944 None:intergenic 35.0%
GTTTGTGTTCTAACTTGGAT+TGG + chr2_4:6158933-6158952 None:intergenic 35.0%
AGAAGGTTTGTGTTCTAACT+TGG + chr2_4:6158938-6158957 None:intergenic 35.0%
ATAGCGTACAACTTTGTCTT+AGG - chr2_4:6159383-6159402 Msa0311330:intron 35.0%
TCTTAGGTGCTTACTCATAT+TGG - chr2_4:6159399-6159418 Msa0311330:intron 35.0%
CTTAGGTGCTTACTCATATT+GGG - chr2_4:6159400-6159419 Msa0311330:intron 35.0%
TTAGGTGCTTACTCATATTG+GGG - chr2_4:6159401-6159420 Msa0311330:intron 35.0%
! GATTCAGATTTGGTATTTGG+AGG - chr2_4:6159641-6159660 Msa0311330:intron 35.0%
TACGATTGTATGTGGAATAG+TGG - chr2_4:6159667-6159686 Msa0311330:intron 35.0%
ACGATTGTATGTGGAATAGT+GGG - chr2_4:6159668-6159687 Msa0311330:intron 35.0%
CACCTTACCAAATGCATTTA+AGG - chr2_4:6159730-6159749 Msa0311330:intron 35.0%
CTTCGGATGCATAATTCTTA+TGG + chr2_4:6159824-6159843 None:intergenic 35.0%
TGGTTACAGTTGTACGAAAT+AGG - chr2_4:6159999-6160018 Msa0311330:CDS 35.0%
TAGGTCTACTCAATATTAGG+AGG + chr2_4:6160052-6160071 None:intergenic 35.0%
AATGGTCTAGTAAATGGAAC+TGG - chr2_4:6160102-6160121 Msa0311330:intron 35.0%
TCTCAGTGACAACATTTCTT+GGG - chr2_4:6160212-6160231 Msa0311330:intron 35.0%
AAGAACTAAATCTCATTGCC+CGG - chr2_4:6160551-6160570 Msa0311330:intron 35.0%
TGAATATTTACGTTTGCTCG+TGG - chr2_4:6160591-6160610 Msa0311330:CDS 35.0%
GTTCATTACTTGCGAAACAA+AGG - chr2_4:6160853-6160872 Msa0311330:intron 35.0%
TGCAGGATAGTATTAACAAC+TGG - chr2_4:6160960-6160979 Msa0311330:intron 35.0%
ATATCATTGTTGCAAGAGCA+AGG - chr2_4:6161104-6161123 Msa0311330:intron 35.0%
TTATATGAAGCTGGAGTTGT+TGG - chr2_4:6161130-6161149 Msa0311330:intron 35.0%
!! ACAAAATGTCATGACTTGGT+TGG + chr2_4:6161190-6161209 None:intergenic 35.0%
!! TTGTTATGATGGACGTTACT+TGG - chr2_4:6161206-6161225 Msa0311330:CDS 35.0%
ACATACACATTAATCACAGC+AGG + chr2_4:6161295-6161314 None:intergenic 35.0%
AGGAATATTTGTGCATCGTA+TGG - chr2_4:6161324-6161343 Msa0311330:intron 35.0%
CAATATTCTTCAGATTGTGC+AGG + chr2_4:6161448-6161467 None:intergenic 35.0%
!! CTCCTTTTAATTAAGCAAGG+TGG - chr2_4:6161578-6161597 Msa0311330:CDS 35.0%
TCCCACCTTGCTTAATTAAA+AGG + chr2_4:6161583-6161602 None:intergenic 35.0%
! GATTTAACTGTCACCTTTTG+TGG - chr2_4:6161601-6161620 Msa0311330:CDS 35.0%
AGAAAAGATCAACCCACAAA+AGG + chr2_4:6161617-6161636 None:intergenic 35.0%
! TATGTGATTAACAGGTGTTG+CGG + chr2_4:6161697-6161716 None:intergenic 35.0%
TGGTTCCATGAACAAGACTT+TGG + chr2_4:6156179-6156198 None:intergenic 40.0%
GGAATCATGGATGACACTAT+GGG + chr2_4:6156202-6156221 None:intergenic 40.0%
GGTGTAAACCATGAAGTTGT+GGG + chr2_4:6156223-6156242 None:intergenic 40.0%
TGGTGTAAACCATGAAGTTG+TGG + chr2_4:6156224-6156243 None:intergenic 40.0%
CTTCATGGTTTACACCAAAG+AGG - chr2_4:6156227-6156246 Msa0311330:three_prime_UTR 40.0%
!! AAGAACATAGGGTGTTGTCA+TGG - chr2_4:6156645-6156664 Msa0311330:intron 40.0%
TTTCGTCCAACTAAGTAGCT+AGG - chr2_4:6156711-6156730 Msa0311330:intron 40.0%
! GGAGCATTTGAGTTCAAATC+TGG - chr2_4:6156753-6156772 Msa0311330:intron 40.0%
! CATTTGAGTTCAAATCTGGG+TGG - chr2_4:6156757-6156776 Msa0311330:intron 40.0%
TTGAGCCCTTTATAAGTGAG+AGG - chr2_4:6156843-6156862 Msa0311330:intron 40.0%
CAGCACCCATTATAATTGGA+CGG + chr2_4:6156999-6157018 None:intergenic 40.0%
! ATTTTTCCTGTTGTGTGCAG+GGG - chr2_4:6157100-6157119 Msa0311330:CDS 40.0%
! TTTTATGGTTGGACTTCTCG+TGG - chr2_4:6157168-6157187 Msa0311330:intron 40.0%
TGAGCTAGAGAGGCAAATAT+TGG + chr2_4:6157199-6157218 None:intergenic 40.0%
TAATTACCTCTGAGCTAGAG+AGG + chr2_4:6157209-6157228 None:intergenic 40.0%
!! GAACTTCAGTGTAATGGACA+AGG + chr2_4:6157548-6157567 None:intergenic 40.0%
TACAACATGCAGCACATACA+AGG + chr2_4:6157621-6157640 None:intergenic 40.0%
TAGGAGTTGGATTGTCAATG+TGG - chr2_4:6157721-6157740 Msa0311330:intron 40.0%
TTACATGCGACAGACAGAAA+TGG + chr2_4:6157790-6157809 None:intergenic 40.0%
GCATTGTCATCAATGAAAGG+TGG + chr2_4:6157982-6158001 None:intergenic 40.0%
! TTTCATTGATGACAATGCCC+CGG - chr2_4:6157984-6158003 Msa0311330:intron 40.0%
AAAAAGCAAACCAGAGAAGC+CGG + chr2_4:6158006-6158025 None:intergenic 40.0%
ATACCATCTGGATATGCACT+TGG - chr2_4:6158330-6158349 Msa0311330:intron 40.0%
TGGCTATGTTTATGGTGGTT+TGG - chr2_4:6158350-6158369 Msa0311330:CDS 40.0%
!! TGGTTTGGTAAGTCTCTATC+TGG - chr2_4:6158365-6158384 Msa0311330:CDS 40.0%
CCGATCGAAAACAATAACAG+GGG + chr2_4:6158646-6158665 None:intergenic 40.0%
! CCCCTGTTATTGTTTTCGAT+CGG - chr2_4:6158643-6158662 Msa0311330:CDS 40.0%
TTCGATCGGTAAACTAGTTC+TGG - chr2_4:6158657-6158676 Msa0311330:CDS 40.0%
! TTGGCAGACTGATTCAGATT+TGG - chr2_4:6159631-6159650 Msa0311330:intron 40.0%
GGAGGAATTACGATTGTATG+TGG - chr2_4:6159659-6159678 Msa0311330:intron 40.0%
! ATTAGCTGGAGGATTTGTTC+TGG - chr2_4:6159694-6159713 Msa0311330:intron 40.0%
AGCTGTTTAGTGTGGAACTT+CGG + chr2_4:6159841-6159860 None:intergenic 40.0%
ACAGCTGTGGTCATAGTTAT+AGG - chr2_4:6159855-6159874 Msa0311330:intron 40.0%
CAGCTGTGGTCATAGTTATA+GGG - chr2_4:6159856-6159875 Msa0311330:intron 40.0%
TTGTAAACGGTCTTCTGATC+TGG - chr2_4:6159886-6159905 Msa0311330:intron 40.0%
CTCTCAGTGACAACATTTCT+TGG - chr2_4:6160211-6160230 Msa0311330:intron 40.0%
CTCAGTGACAACATTTCTTG+GGG - chr2_4:6160213-6160232 Msa0311330:intron 40.0%
!! CTTGGGGCAGTATTTTGTTT+TGG - chr2_4:6160229-6160248 Msa0311330:intron 40.0%
!!! ACTTCTTGTTTTTGCCACTC+AGG - chr2_4:6160306-6160325 Msa0311330:intron 40.0%
!! ATAGAAGGAAAGTACCTGAG+TGG + chr2_4:6160323-6160342 None:intergenic 40.0%
AGGTACTTTCCTTCTATGTG+AGG - chr2_4:6160326-6160345 Msa0311330:intron 40.0%
AGAGATCTTCCTCACATAGA+AGG + chr2_4:6160338-6160357 None:intergenic 40.0%
!! GGGCAATGAGATTTAGTTCT+TGG + chr2_4:6160552-6160571 None:intergenic 40.0%
AAAAGAAGACCCAAACAACC+GGG + chr2_4:6160572-6160591 None:intergenic 40.0%
CAAAAGAAGACCCAAACAAC+CGG + chr2_4:6160573-6160592 None:intergenic 40.0%
! TTGCTCGTGGTTTTCTTTTC+AGG - chr2_4:6160604-6160623 Msa0311330:CDS 40.0%
! TGCTCGTGGTTTTCTTTTCA+GGG - chr2_4:6160605-6160624 Msa0311330:CDS 40.0%
ATGGATAAAGGCCTCAAACT+TGG + chr2_4:6160665-6160684 None:intergenic 40.0%
! AAGTTTGAGGCCTTTATCCA+TGG - chr2_4:6160664-6160683 Msa0311330:intron 40.0%
ATGAATGGCAACAGTAGACA+TGG + chr2_4:6160690-6160709 None:intergenic 40.0%
ACTGTTGCCATTCATCTCTT+TGG - chr2_4:6160695-6160714 Msa0311330:intron 40.0%
CACATCTCCAAAGAGATGAA+TGG + chr2_4:6160705-6160724 None:intergenic 40.0%
! TTATCCAGGTCAGCCTTTTA+CGG - chr2_4:6160747-6160766 Msa0311330:intron 40.0%
ATTACTTGCGAAACAAAGGG+AGG - chr2_4:6160857-6160876 Msa0311330:intron 40.0%
GTTGAGGCAGAGAAAATTAC+TGG - chr2_4:6160879-6160898 Msa0311330:intron 40.0%
ATAAACCATATTCCAGCTGC+CGG + chr2_4:6161022-6161041 None:intergenic 40.0%
GCAGCTGGAATATGGTTTAT+CGG - chr2_4:6161022-6161041 Msa0311330:intron 40.0%
GCAAGGATGTTATATGAAGC+TGG - chr2_4:6161121-6161140 Msa0311330:intron 40.0%
CATCAAGTGTCAAAGGTTGA+GGG - chr2_4:6161370-6161389 Msa0311330:intron 40.0%
! CCTGTTTTCTCTTGAAGCAA+CGG + chr2_4:6161409-6161428 None:intergenic 40.0%
! GTGTATGCTATAAGTTGGCA+GGG + chr2_4:6161548-6161567 None:intergenic 40.0%
! TGTGTATGCTATAAGTTGGC+AGG + chr2_4:6161549-6161568 None:intergenic 40.0%
! ATGTGATTAACAGGTGTTGC+GGG + chr2_4:6161696-6161715 None:intergenic 40.0%
ATCATGGATGACACTATGGG+TGG + chr2_4:6156199-6156218 None:intergenic 45.0%
GGGAATCATGGATGACACTA+TGG + chr2_4:6156203-6156222 None:intergenic 45.0%
CCATGAAGTTGTGGGAATCA+TGG + chr2_4:6156215-6156234 None:intergenic 45.0%
CCATGATTCCCACAACTTCA+TGG - chr2_4:6156212-6156231 Msa0311330:three_prime_UTR 45.0%
CTCCTATTTCCATCCATGCT+GGG - chr2_4:6156288-6156307 Msa0311330:three_prime_UTR 45.0%
TACCCAGCATGGATGGAAAT+AGG + chr2_4:6156293-6156312 None:intergenic 45.0%
! TGTTACTTACCCAGCATGGA+TGG + chr2_4:6156300-6156319 None:intergenic 45.0%
! CCTTTGTTACTTACCCAGCA+TGG + chr2_4:6156304-6156323 None:intergenic 45.0%
CCATGCTGGGTAAGTAACAA+AGG - chr2_4:6156301-6156320 Msa0311330:three_prime_UTR 45.0%
CAAGGAGCAATAGCTAGCAA+TGG - chr2_4:6156551-6156570 Msa0311330:intron 45.0%
CTTGAGCCTAGCTACTTAGT+TGG + chr2_4:6156720-6156739 None:intergenic 45.0%
ACTAAGTAGCTAGGCTCAAG+TGG - chr2_4:6156720-6156739 Msa0311330:intron 45.0%
AGGCTCAAGTGGTTCACATT+CGG - chr2_4:6156731-6156750 Msa0311330:intron 45.0%
CACACTGCTTAGAAAAGTCG+AGG - chr2_4:6156820-6156839 Msa0311330:intron 45.0%
TGGTGTTCAACTCACTTGTG+TGG - chr2_4:6156905-6156924 Msa0311330:intron 45.0%
!! AGGGGAGTATCATCCACATT+AGG + chr2_4:6156941-6156960 None:intergenic 45.0%
GTAAAGTCTAGCCAAGTGGT+GGG + chr2_4:6156969-6156988 None:intergenic 45.0%
AGTAAAGTCTAGCCAAGTGG+TGG + chr2_4:6156970-6156989 None:intergenic 45.0%
! TTTTTCCTGTTGTGTGCAGG+GGG - chr2_4:6157101-6157120 Msa0311330:CDS 45.0%
! TATTTGCCTCTCTAGCTCAG+AGG - chr2_4:6157200-6157219 Msa0311330:intron 45.0%
! ACTCTTGCGACCTTCTTTTG+TGG - chr2_4:6157744-6157763 Msa0311330:intron 45.0%
TTCTGTCTGTCGCATGTAAG+TGG - chr2_4:6157791-6157810 Msa0311330:intron 45.0%
TGTCGCATGTAAGTGGTACT+GGG - chr2_4:6157798-6157817 Msa0311330:intron 45.0%
!! GGGGCATTGTCATCAATGAA+AGG + chr2_4:6157985-6158004 None:intergenic 45.0%
AAAAGCAAACCAGAGAAGCC+GGG + chr2_4:6158005-6158024 None:intergenic 45.0%
TAGCCAAGTGCATATCCAGA+TGG + chr2_4:6158336-6158355 None:intergenic 45.0%
GCACTTGGCTATGTTTATGG+TGG - chr2_4:6158345-6158364 Msa0311330:intron 45.0%
TTGGTTGGCGTTATGCATTC+TGG - chr2_4:6158520-6158539 Msa0311330:intron 45.0%
TGGTTGGCGTTATGCATTCT+GGG - chr2_4:6158521-6158540 Msa0311330:intron 45.0%
!! GGTAAACTAGTTCTGGATCC+AGG - chr2_4:6158664-6158683 Msa0311330:CDS 45.0%
ACAGTTGCATCAGGAGTTCA+TGG - chr2_4:6158727-6158746 Msa0311330:intron 45.0%
AGTTCCACACTAAACAGCTG+TGG - chr2_4:6159842-6159861 Msa0311330:CDS 45.0%
ATGACCACAGCTGTTTAGTG+TGG + chr2_4:6159849-6159868 None:intergenic 45.0%
AATCTCATTGCCCGGTTGTT+TGG - chr2_4:6160559-6160578 Msa0311330:intron 45.0%
ATCTCATTGCCCGGTTGTTT+GGG - chr2_4:6160560-6160579 Msa0311330:intron 45.0%
!! GTGGTTTTCTTTTCAGGGTC+CGG - chr2_4:6160610-6160629 Msa0311330:CDS 45.0%
GTAGACATGGCCATGGATAA+AGG + chr2_4:6160677-6160696 None:intergenic 45.0%
ACCTGGATAACTCCAACAAG+GGG + chr2_4:6160737-6160756 None:intergenic 45.0%
GACCTGGATAACTCCAACAA+GGG + chr2_4:6160738-6160757 None:intergenic 45.0%
TGACCTGGATAACTCCAACA+AGG + chr2_4:6160739-6160758 None:intergenic 45.0%
CAGTGAGCATCAAGTGTCAA+AGG - chr2_4:6161363-6161382 Msa0311330:intron 45.0%
GCATCAAGTGTCAAAGGTTG+AGG - chr2_4:6161369-6161388 Msa0311330:intron 45.0%
CCGTTGCTTCAAGAGAAAAC+AGG - chr2_4:6161406-6161425 Msa0311330:intron 45.0%
TTCGCTTTGTGCTCACTACA+TGG - chr2_4:6161498-6161517 Msa0311330:intron 45.0%
CCAGCATGGATGGAAATAGG+AGG + chr2_4:6156290-6156309 None:intergenic 50.0%
CCTCCTATTTCCATCCATGC+TGG - chr2_4:6156287-6156306 Msa0311330:three_prime_UTR 50.0%
GGCTCAAGTGGTTCACATTC+GGG - chr2_4:6156732-6156751 Msa0311330:intron 50.0%
AATCTGGGTGGAGCAATCCT+TGG - chr2_4:6156769-6156788 Msa0311330:CDS 50.0%
TCACGTGCTACACAACACCA+AGG + chr2_4:6156789-6156808 None:intergenic 50.0%
! TGGTTGCTCTGAGCCTAATG+TGG - chr2_4:6156925-6156944 Msa0311330:intron 50.0%
! TTTTCCTGTTGTGTGCAGGG+GGG - chr2_4:6157102-6157121 Msa0311330:CDS 50.0%
CTGTCGCATGTAAGTGGTAC+TGG - chr2_4:6157797-6157816 Msa0311330:intron 50.0%
GTCGCATGTAAGTGGTACTG+GGG - chr2_4:6157799-6157818 Msa0311330:intron 50.0%
! CTGTATAGGCTGGTTGGTGT+TGG - chr2_4:6157931-6157950 Msa0311330:intron 50.0%
AAAGCAAACCAGAGAAGCCG+GGG + chr2_4:6158004-6158023 None:intergenic 50.0%
GTACCTGACACAGTTGCATC+AGG - chr2_4:6158718-6158737 Msa0311330:intron 50.0%
ACTCCTGATGCAACTGTGTC+AGG + chr2_4:6158724-6158743 None:intergenic 50.0%
TGATGCACGCAGTAGATCAG+TGG + chr2_4:6159180-6159199 None:intergenic 50.0%
!! GGAATAGTGGGCACATTAGC+TGG - chr2_4:6159680-6159699 Msa0311330:intron 50.0%
!! ATAGTGGGCACATTAGCTGG+AGG - chr2_4:6159683-6159702 Msa0311330:intron 50.0%
GATAACTCCAACAAGGGGTG+AGG + chr2_4:6160732-6160751 None:intergenic 50.0%
ACCCCTTGTTGGAGTTATCC+AGG - chr2_4:6160733-6160752 Msa0311330:intron 50.0%
TGCGAAACAAAGGGAGGTTG+AGG - chr2_4:6160863-6160882 Msa0311330:intron 50.0%
ACTATACTGTTTCCGGCAGC+TGG - chr2_4:6161007-6161026 Msa0311330:intron 50.0%
TGTTTCCGGCAGCTGGAATA+TGG - chr2_4:6161014-6161033 Msa0311330:intron 50.0%
TTGTGCTCACTACATGGCTC+CGG - chr2_4:6161504-6161523 Msa0311330:intron 50.0%
!! AGCCAAGTGGTGGGTCACAA+GGG + chr2_4:6156960-6156979 None:intergenic 55.0%
!! TAGCCAAGTGGTGGGTCACA+AGG + chr2_4:6156961-6156980 None:intergenic 55.0%
AAATCCCCCCTGCACACAAC+AGG + chr2_4:6157109-6157128 None:intergenic 55.0%
!! TAGGCTGGTTGGTGTTGGTG+AGG - chr2_4:6157936-6157955 Msa0311330:intron 55.0%
GGCAACAGTAGACATGGCCA+TGG + chr2_4:6160684-6160703 None:intergenic 55.0%
ACTCCAACAAGGGGTGAGGA+AGG + chr2_4:6160728-6160747 None:intergenic 55.0%
! TCCAGGTCAGCCTTTTACGG+AGG - chr2_4:6160750-6160769 Msa0311330:intron 55.0%
ACCTCCGTAAAAGGCTGACC+TGG + chr2_4:6160754-6160773 None:intergenic 55.0%
TGTGCTCACTACATGGCTCC+GGG - chr2_4:6161505-6161524 Msa0311330:intron 55.0%
TCCCCTTGTGACCCACCACT+TGG - chr2_4:6156955-6156974 Msa0311330:intron 60.0%
!! GCCAAGTGGTGGGTCACAAG+GGG + chr2_4:6156959-6156978 None:intergenic 60.0%
TGACAATGCCCCGGCTTCTC+TGG - chr2_4:6157993-6158012 Msa0311330:intron 60.0%
GTGCCTTCCTCACCCCTTGT+TGG - chr2_4:6160722-6160741 Msa0311330:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 6155984 6161818 6155984 ID=Msa0311330;Name=Msa0311330
chr2_4 mRNA 6155984 6161818 6155984 ID=Msa0311330-mRNA-1;Parent=Msa0311330;Name=Msa0311330-mRNA-1;_AED=0.33;_eAED=0.33;_QI=179|1|1|1|1|1|16|350|514
chr2_4 exon 6155984 6156476 6155984 ID=Msa0311330-mRNA-1:exon:2349;Parent=Msa0311330-mRNA-1
chr2_4 exon 6156759 6156837 6156759 ID=Msa0311330-mRNA-1:exon:2348;Parent=Msa0311330-mRNA-1
chr2_4 exon 6157048 6157176 6157048 ID=Msa0311330-mRNA-1:exon:2347;Parent=Msa0311330-mRNA-1
chr2_4 exon 6157475 6157594 6157475 ID=Msa0311330-mRNA-1:exon:2346;Parent=Msa0311330-mRNA-1
chr2_4 exon 6158051 6158164 6158051 ID=Msa0311330-mRNA-1:exon:2345;Parent=Msa0311330-mRNA-1
chr2_4 exon 6158348 6158424 6158348 ID=Msa0311330-mRNA-1:exon:2344;Parent=Msa0311330-mRNA-1
chr2_4 exon 6158639 6158736 6158639 ID=Msa0311330-mRNA-1:exon:2343;Parent=Msa0311330-mRNA-1
chr2_4 exon 6158864 6158945 6158864 ID=Msa0311330-mRNA-1:exon:2342;Parent=Msa0311330-mRNA-1
chr2_4 exon 6159054 6159116 6159054 ID=Msa0311330-mRNA-1:exon:2341;Parent=Msa0311330-mRNA-1
chr2_4 exon 6159193 6159295 6159193 ID=Msa0311330-mRNA-1:exon:2340;Parent=Msa0311330-mRNA-1
chr2_4 exon 6159431 6159505 6159431 ID=Msa0311330-mRNA-1:exon:2339;Parent=Msa0311330-mRNA-1
chr2_4 exon 6159788 6159863 6159788 ID=Msa0311330-mRNA-1:exon:2338;Parent=Msa0311330-mRNA-1
chr2_4 exon 6159997 6160101 6159997 ID=Msa0311330-mRNA-1:exon:2337;Parent=Msa0311330-mRNA-1
chr2_4 exon 6160581 6160682 6160581 ID=Msa0311330-mRNA-1:exon:2336;Parent=Msa0311330-mRNA-1
chr2_4 exon 6161205 6161297 6161205 ID=Msa0311330-mRNA-1:exon:2335;Parent=Msa0311330-mRNA-1
chr2_4 exon 6161554 6161818 6161554 ID=Msa0311330-mRNA-1:exon:2334;Parent=Msa0311330-mRNA-1
chr2_4 five_prime_UTR 6161640 6161818 6161640 ID=Msa0311330-mRNA-1:five_prime_utr;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6161554 6161639 6161554 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6161205 6161297 6161205 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6160581 6160682 6160581 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6159997 6160101 6159997 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6159788 6159863 6159788 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6159431 6159505 6159431 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6159193 6159295 6159193 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6159054 6159116 6159054 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6158864 6158945 6158864 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6158639 6158736 6158639 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6158348 6158424 6158348 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6158051 6158164 6158051 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6157475 6157594 6157475 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6157048 6157176 6157048 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6156759 6156837 6156759 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 CDS 6156334 6156476 6156334 ID=Msa0311330-mRNA-1:cds;Parent=Msa0311330-mRNA-1
chr2_4 three_prime_UTR 6155984 6156333 6155984 ID=Msa0311330-mRNA-1:three_prime_utr;Parent=Msa0311330-mRNA-1
Gene Sequence

>Msa0311330

ATGCAAGTAACATCCAAAGTCTTGTTCATGGAACCACCCATAGTGTCATCCATGATTCCCACAACTTCATGGTTTACACCAAAGAGGTTACTTGGTATATTTTGTGTGATTAATTTGTTAAACTATTTGGATCAAGGAGCAATAGCTAGCAATGGTGTTAATGGAAGTACAGGAATACAGGGGGATTTTAACTTGAACAATTTTGAAGATGGAGTTTTATCATCTGCTTTTATGGTTGGACTTCTCGTGGCTTCTCCAATATTTGCCTCTCTAGCTCAGAGTGTAAATCCATTTAGACTTATAGGAGTTGGATTGTCAATGTGGACTCTTGCGACCTTCTTTTGTGGTTTTTCTTTCAATTTCTGGTCCATTTCTGTCTGTCGCATGCTGGTTGGTGTTGGTGAGGCTTCGTTTATAAGTTTAGCACCACCTTTCATTGATGACAATGCCCCGGCTTCTCTGAAAACAACATGGCTCGCAATGTTTTACATGTGTATACCATCTGGATATGCACTTGGCTATGTTTATGGTGGTTTGATAGGAAGTAATTTTGGTTGGCGTTATGCATTCTGGGTAGAGTCTATATTGATGCTTCCATTTGCTATTTCAGGATTTTTAATGAAGCCTTTACAGTTGAAAGGTTTTGTTCCTGTTGATTTGATAAAGGCACAAGTACCTGACACAGTTGCATCAGGAGTTCATGTCACGAACGCTTCTAATGTCAGAGATGAGTCACTGTCTTTTAAGGAAGAATTCAGAGATAAAAGCCCAAATGACCAATCCAAGTCTAAATCTGCGATGAAAATGCTTGATCAGTTCTCAAGATTTTTTATTGATATGAAAGCGCTCTTGCTTGATAATGTTTATGTTATCAATGTTCTAGGTCACATAGCGTACAACTTTGTCTTAGGTGCTTACTCATATTGGGGTCCCAAAGCCATCTACAATATTTATAACATGACTGATTCAGATTTGGTATTTGGAGGAATTACGATTGTATGTGGAATAGTGGGCACATTAGCTGGAGGATTTGTTCTGGATTATATGACTAACACCTTACCAAATGCATTTAAGCTTCTCTCAGTGACAACATTTCTTGGGGCAGTATTTTGTTTTGGTGCCTTTTTATGCAGAAATGTGAATGGCTTTCTTGTTCTTTTCTCTATTGGCGAACTTCTTGTTTTTGCCACTCAGGGTCCGGTGAATTATGTATGTCTTAATTGTGTTAAACCAAGTTTGAGGCCTTTATCCATGGCCATGTCTACTGTTGCCATTCATCTCTTTGGAGATGTGCCTTCCTCACCCCTTGTTGGAGTTATCCAGGATAGTATTAACAACTGGAGAACAACTGTATTGATTCTAACAACTATACTGTTTCCGGCAGCTGGAATATGGTTTATCGGAATATTTGTGCATCGTATGGATAGATTTGAAGATGTCAGTGAGCATCAAGTGTCAAAGGTTGAGGGCTCATGCACTATACCGTTGCTTCAAGAGAAAACAGGAGAAACATCATTATCTCCTGCACAATCTGAAGAATATTGA

Protein sequence

>Msa0311330

MQVTSKVLFMEPPIVSSMIPTTSWFTPKRLLGIFCVINLLNYLDQGAIASNGVNGSTGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAQSVNPFRLIGVGLSMWTLATFFCGFSFNFWSISVCRMLVGVGEASFISLAPPFIDDNAPASLKTTWLAMFYMCIPSGYALGYVYGGLIGSNFGWRYAFWVESILMLPFAISGFLMKPLQLKGFVPVDLIKAQVPDTVASGVHVTNASNVRDESLSFKEEFRDKSPNDQSKSKSAMKMLDQFSRFFIDMKALLLDNVYVINVLGHIAYNFVLGAYSYWGPKAIYNIYNMTDSDLVFGGITIVCGIVGTLAGGFVLDYMTNTLPNAFKLLSVTTFLGAVFCFGAFLCRNVNGFLVLFSIGELLVFATQGPVNYVCLNCVKPSLRPLSMAMSTVAIHLFGDVPSSPLVGVIQDSINNWRTTVLILTTILFPAAGIWFIGIFVHRMDRFEDVSEHQVSKVEGSCTIPLLQEKTGETSLSPAQSEEY*