Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130390 | XP_003591776.2 | 96.578 | 526 | 17 | 1 | 1 | 525 | 1 | 526 | 0.0 | 1055 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130390 | sp|B9RAJ0|DNPEP_RICCO | 56.033 | 489 | 192 | 6 | 55 | 524 | 6 | 490 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130390 | G7I369 | 96.578 | 526 | 17 | 1 | 1 | 525 | 1 | 526 | 0.0 | 1055 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030000 | Msa0130390 | 0.807193 | 5.697177e-50 | -8.615850e-47 |
| Msa0044320 | Msa0130390 | 0.813079 | 3.069041e-51 | -8.615850e-47 |
| Msa0047470 | Msa0130390 | 0.805021 | 1.632192e-49 | -8.615850e-47 |
| Msa0091480 | Msa0130390 | 0.803997 | 2.668946e-49 | -8.615850e-47 |
| Msa0105210 | Msa0130390 | 0.812027 | 5.211201e-51 | -8.615850e-47 |
| Msa0125230 | Msa0130390 | 0.800224 | 1.593126e-48 | -8.615850e-47 |
| Msa0130390 | Msa0130800 | 0.803017 | 4.260754e-49 | -8.615850e-47 |
| Msa0130390 | Msa0250520 | 0.810437 | 1.153445e-50 | -8.615850e-47 |
| Msa0130390 | Msa0311330 | 0.811065 | 8.432921e-51 | -8.615850e-47 |
| Msa0130390 | Msa0350020 | 0.814898 | 1.218488e-51 | -8.615850e-47 |
| Msa0130390 | Msa0437710 | 0.814059 | 1.867925e-51 | -8.615850e-47 |
| Msa0130390 | Msa0509970 | 0.812235 | 4.695263e-51 | -8.615850e-47 |
| Msa0130390 | Msa0514990 | 0.816012 | 6.885023e-52 | -8.615850e-47 |
| Msa0130390 | Msa0530930 | 0.804751 | 1.858433e-49 | -8.615850e-47 |
| Msa0130390 | Msa0540320 | 0.806079 | 9.790998e-50 | -8.615850e-47 |
| Msa0130390 | Msa0549740 | 0.823582 | 1.282039e-53 | -8.615850e-47 |
| Msa0130390 | Msa0587900 | 0.804194 | 2.428112e-49 | -8.615850e-47 |
| Msa0130390 | Msa0596100 | 0.807365 | 5.238539e-50 | -8.615850e-47 |
| Msa0130390 | Msa0660880 | -0.800096 | 1.691343e-48 | -8.615850e-47 |
| Msa0130390 | Msa0674220 | 0.816229 | 6.158983e-52 | -8.615850e-47 |
| Msa0130390 | Msa0674300 | 0.803935 | 2.748634e-49 | -8.615850e-47 |
| Msa0130390 | Msa0716740 | -0.800341 | 1.508411e-48 | -8.615850e-47 |
| Msa0130390 | Msa0726610 | 0.811006 | 8.688306e-51 | -8.615850e-47 |
| Msa0130390 | Msa0770430 | 0.820574 | 6.383159e-53 | -8.615850e-47 |
| Msa0130390 | Msa0780140 | 0.805164 | 1.523526e-49 | -8.615850e-47 |
| Msa0130390 | Msa0799290 | -0.800714 | 1.266303e-48 | -8.615850e-47 |
| Msa0130390 | Msa0811510 | 0.807773 | 4.291669e-50 | -8.615850e-47 |
| Msa0130390 | Msa0837510 | -0.800675 | 1.289741e-48 | -8.615850e-47 |
| Msa0130390 | Msa0851740 | 0.810097 | 1.365458e-50 | -8.615850e-47 |
| Msa0130390 | Msa0934830 | 0.812260 | 4.635740e-51 | -8.615850e-47 |
| Msa0130390 | Msa0970050 | 0.801107 | 1.052624e-48 | -8.615850e-47 |
| Msa0130390 | Msa0975080 | 0.811500 | 6.786496e-51 | -8.615850e-47 |
| Msa0130390 | Msa0985430 | 0.800214 | 1.601031e-48 | -8.615850e-47 |
| Msa0130390 | Msa1054890 | 0.811127 | 8.178654e-51 | -8.615850e-47 |
| Msa0130390 | Msa1056640 | 0.805444 | 1.330936e-49 | -8.615850e-47 |
| Msa0130390 | Msa1067920 | 0.817999 | 2.464011e-52 | -8.615850e-47 |
| Msa0130390 | Msa1113280 | 0.807953 | 3.929082e-50 | -8.615850e-47 |
| Msa0130390 | Msa1146150 | 0.800975 | 1.119760e-48 | -8.615850e-47 |
| Msa0130390 | Msa1166970 | 0.805890 | 1.072902e-49 | -8.615850e-47 |
| Msa0130390 | Msa1184730 | 0.803058 | 4.179200e-49 | -8.615850e-47 |
| Msa0130390 | Msa1238700 | 0.835199 | 1.928440e-56 | -8.615850e-47 |
| Msa0130390 | Msa1272440 | 0.812992 | 3.206700e-51 | -8.615850e-47 |
| Msa0130390 | Msa1309240 | 0.804596 | 2.002208e-49 | -8.615850e-47 |
| Msa0130390 | Msa1310110 | 0.801361 | 9.335975e-49 | -8.615850e-47 |
| Msa0130390 | Msa1326000 | 0.810238 | 1.272860e-50 | -8.615850e-47 |
| Msa0130390 | Msa1364670 | 0.806501 | 7.978690e-50 | -8.615850e-47 |
| Msa0130390 | Msa1432640 | 0.802093 | 6.606678e-49 | -8.615850e-47 |
| Msa0130390 | Msa1440180 | 0.814151 | 1.783040e-51 | -8.615850e-47 |
| Msa0130390 | Msa1449740 | 0.814498 | 1.493977e-51 | -8.615850e-47 |
| Msa0130390 | Msa1456810 | 0.806924 | 6.494575e-50 | -8.615850e-47 |
| Msa0130390 | Msa1459260 | 0.806606 | 7.582621e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130390 | MtrunA17_Chr1g0198491 | 93.900 | 541 | 17 | 2 | 1 | 525 | 1 | 541 | 0.0 | 1044 |
| Msa0130390 | MtrunA17_Chr3g0116281 | 55.230 | 478 | 195 | 5 | 61 | 524 | 9 | 481 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130390 | AT5G04710.1 | 78.423 | 482 | 98 | 4 | 46 | 524 | 47 | 525 | 0.0 | 801 |
| Msa0130390 | AT5G60160.1 | 58.193 | 476 | 183 | 5 | 61 | 524 | 5 | 476 | 0.0 | 583 |
Find 134 sgRNAs with CRISPR-Local
Find 546 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTTATCTGCAAAATT+TGG | 0.136182 | 1_3:+60564471 | None:intergenic |
| AGAAGATGAGTCTCAAAATT+TGG | 0.216625 | 1_3:+60568523 | None:intergenic |
| TGGTGCACCCACCATGTTTC+AGG | 0.245589 | 1_3:-60566416 | Msa0130390:CDS |
| CATTAAAACGATTAGAATCT+TGG | 0.283821 | 1_3:-60562685 | Msa0130390:three_prime_UTR |
| AAGAGTAGGAATACGCAAAA+TGG | 0.284264 | 1_3:+60569342 | None:intergenic |
| GATAGGGATTTGAGTGTTGC+AGG | 0.304340 | 1_3:-60569427 | Msa0130390:CDS |
| CGAATGAAGTGTGATGAATT+TGG | 0.317750 | 1_3:+60570846 | None:intergenic |
| TTGCCTGAGTTGGAAGGTTA+TGG | 0.318756 | 1_3:+60564337 | None:intergenic |
| CACTCGTAATATGTCTTGTT+TGG | 0.323205 | 1_3:-60570537 | Msa0130390:CDS |
| TCGATTATCTCAACGAATCT+TGG | 0.323561 | 1_3:-60570752 | Msa0130390:CDS |
| TCTAACAGTGTCTGCAGATA+TGG | 0.338378 | 1_3:-60564508 | Msa0130390:intron |
| TATGGCATACTTGGTTTGAT+AGG | 0.339877 | 1_3:-60569444 | Msa0130390:CDS |
| AGACTTATGGAGGTGGGTTA+TGG | 0.344088 | 1_3:-60569462 | Msa0130390:CDS |
| TTGTGAATCTCCGGATGATT+TGG | 0.367388 | 1_3:-60566950 | Msa0130390:CDS |
| GAACTTTCTTCCCTAGCATT+TGG | 0.367591 | 1_3:-60562785 | Msa0130390:three_prime_UTR |
| AATTTGGTTTGAAACCTTCC+TGG | 0.386938 | 1_3:+60568539 | None:intergenic |
| ATGGTAAATGTTCAGACTTA+TGG | 0.394816 | 1_3:-60569475 | Msa0130390:CDS |
| TAGGTCCAATACTCGCTTCT+GGG | 0.407232 | 1_3:-60563770 | Msa0130390:CDS |
| TTTGTTCTTAATTTATTAGC+AGG | 0.410447 | 1_3:-60562657 | Msa0130390:three_prime_UTR |
| ATAGGTCCAATACTCGCTTC+TGG | 0.410477 | 1_3:-60563771 | Msa0130390:CDS |
| TGTTTGGTTGCTTTCGCCGT+TGG | 0.416471 | 1_3:-60570521 | Msa0130390:CDS |
| GTTAACAATGGAAACGGATT+GGG | 0.417308 | 1_3:+60570782 | None:intergenic |
| GTTGATGCCATGTTTCTGAC+TGG | 0.436244 | 1_3:+60570963 | None:intergenic |
| TTTCTTCCCTAGCATTTGGT+TGG | 0.441117 | 1_3:-60562781 | Msa0130390:three_prime_UTR |
| TTCAAGTTATTGCGCATTGA+GGG | 0.445171 | 1_3:-60566986 | Msa0130390:CDS |
| GAGGTGGGTTATGGCATACT+TGG | 0.446649 | 1_3:-60569453 | Msa0130390:CDS |
| GAAGGCTTCTTCTTATATGA+TGG | 0.447361 | 1_3:-60569494 | Msa0130390:CDS |
| GAGACGTATAGTTGCGAGCT+TGG | 0.450006 | 1_3:-60566389 | Msa0130390:CDS |
| CTACTCTCTGTAGGAATTCG+TGG | 0.450140 | 1_3:-60563823 | Msa0130390:intron |
| CCAATACTCGCTTCTGGGGT+TGG | 0.454012 | 1_3:-60563765 | Msa0130390:CDS |
| ATAGTTGTGTTTGCTGAGGA+AGG | 0.456388 | 1_3:-60562897 | Msa0130390:three_prime_UTR |
| ACAAGTCCTTTCTGCAACTC+TGG | 0.460030 | 1_3:+60564435 | None:intergenic |
| AGATTGCGGCAGCGAAGAAA+TGG | 0.464289 | 1_3:+60570870 | None:intergenic |
| TCAGATTCTGCTCAAGGAGC+TGG | 0.464972 | 1_3:-60566436 | Msa0130390:CDS |
| GAATGAAGTGTGATGAATTT+GGG | 0.466763 | 1_3:+60570847 | None:intergenic |
| CGTTAACAATGGAAACGGAT+TGG | 0.469284 | 1_3:+60570781 | None:intergenic |
| GGAAGAAAGTTCATTTGCTA+AGG | 0.472814 | 1_3:+60562796 | None:intergenic |
| ATGGCATACTTGGTTTGATA+GGG | 0.475833 | 1_3:-60569443 | Msa0130390:CDS |
| ACTATACGCCAATCATTTCT+CGG | 0.479951 | 1_3:-60566331 | Msa0130390:intron |
| GGTGCTAGTGGAACTAGAAT+AGG | 0.482935 | 1_3:-60562874 | Msa0130390:three_prime_UTR |
| TCATCATCCACTGCTTATAC+AGG | 0.483415 | 1_3:-60568422 | Msa0130390:intron |
| CTCTTGCCATTCATCTTGAC+CGG | 0.486089 | 1_3:-60569324 | Msa0130390:intron |
| CAGTGGATGATGAGAAGCTT+TGG | 0.489869 | 1_3:+60568432 | None:intergenic |
| AGTAACGTCCACCTGGTTTG+AGG | 0.492439 | 1_3:+60570564 | None:intergenic |
| CAAAATTTGGATGAACTCCA+TGG | 0.496480 | 1_3:+60564484 | None:intergenic |
| TGTTGACTCTTGTGAATCTC+CGG | 0.497372 | 1_3:-60566959 | Msa0130390:CDS |
| CCAACCCCAGAAGCGAGTAT+TGG | 0.498498 | 1_3:+60563765 | None:intergenic |
| AGAGTAGGAATACGCAAAAT+GGG | 0.505031 | 1_3:+60569343 | None:intergenic |
| GCATAATCCAACCAAATGCT+AGG | 0.505418 | 1_3:+60562774 | None:intergenic |
| CTTCAAGTTATTGCGCATTG+AGG | 0.506033 | 1_3:-60566987 | Msa0130390:CDS |
| ATGGTATACCGAGAAATGAT+TGG | 0.506590 | 1_3:+60566323 | None:intergenic |
| GATACTCAACCTAGCTGCCT+TGG | 0.507943 | 1_3:-60567057 | Msa0130390:CDS |
| TTGCTCAACTTTCAATGCAC+AGG | 0.508431 | 1_3:-60563719 | Msa0130390:intron |
| TGAAGGTACAATGTGGGTAA+TGG | 0.509222 | 1_3:-60569583 | Msa0130390:intron |
| GCAGTATAAGAGAAATATGT+GGG | 0.509854 | 1_3:-60563039 | Msa0130390:intron |
| TTCTTAATGAAAATGAAGAA+TGG | 0.509917 | 1_3:-60570589 | Msa0130390:CDS |
| TGGCTAGCGAACAAGCGATT+CGG | 0.514344 | 1_3:-60566930 | Msa0130390:CDS |
| TAGAGAGGAATTGCCTGAGT+TGG | 0.517382 | 1_3:+60564327 | None:intergenic |
| TGGACTCATTTCCACGCCAC+AGG | 0.517508 | 1_3:-60570732 | Msa0130390:intron |
| AATGTATTAACAAATGCTCT+CGG | 0.518734 | 1_3:+60562704 | None:intergenic |
| TGAGTGATGGAGATGAAGAA+TGG | 0.519262 | 1_3:+60570916 | None:intergenic |
| ACTCAACCTAGCTGCCTTGG+AGG | 0.522687 | 1_3:-60567054 | Msa0130390:CDS |
| AGAAGCGAGTATTGGACCTA+TGG | 0.522950 | 1_3:+60563773 | None:intergenic |
| AGTTGTGTTTGCTGAGGAAG+GGG | 0.524083 | 1_3:-60562895 | Msa0130390:three_prime_UTR |
| AAACGACAATTAATCGCAGC+TGG | 0.525194 | 1_3:-60570620 | Msa0130390:CDS |
| CAGCGAAGAAATGGTGATGA+TGG | 0.527044 | 1_3:+60570879 | None:intergenic |
| TAGTTGTGTTTGCTGAGGAA+GGG | 0.528313 | 1_3:-60562896 | Msa0130390:three_prime_UTR |
| TTGATGCCATGTTTCTGACT+GGG | 0.529382 | 1_3:+60570964 | None:intergenic |
| TGCCATGTTTCTGACTGGGT+GGG | 0.535192 | 1_3:+60570968 | None:intergenic |
| TTCCACTGGTAGCATAGCGC+TGG | 0.536045 | 1_3:+60564394 | None:intergenic |
| CAATTCCACAGTCAACAGTT+CGG | 0.536111 | 1_3:+60563739 | None:intergenic |
| AATCCATAACCTTCCAACTC+AGG | 0.540676 | 1_3:-60564340 | Msa0130390:intron |
| ATAGTACCGGTCAAGATGAA+TGG | 0.542404 | 1_3:+60569318 | None:intergenic |
| TTGAGGTTGAGTTTGAGTGA+TGG | 0.543547 | 1_3:+60570903 | None:intergenic |
| TTTGCACCTCCAAGGCAGCT+AGG | 0.544081 | 1_3:+60567048 | None:intergenic |
| AAGATCGTTAACAATGGAAA+CGG | 0.548215 | 1_3:+60570776 | None:intergenic |
| GTCCTTTCTGCAACTCTGGT+CGG | 0.548950 | 1_3:+60564439 | None:intergenic |
| TGCAGTATAAGAGAAATATG+TGG | 0.550194 | 1_3:-60563040 | Msa0130390:intron |
| GTGGGTTCAGATTCTGCTCA+AGG | 0.551999 | 1_3:-60566442 | Msa0130390:CDS |
| GTTAGAAATGACATGGGATG+CGG | 0.553592 | 1_3:-60563801 | Msa0130390:CDS |
| GCAAATAACTATGTTGGTGA+AGG | 0.554402 | 1_3:-60566367 | Msa0130390:CDS |
| AATGTTCAGACTTATGGAGG+TGG | 0.554687 | 1_3:-60569469 | Msa0130390:CDS |
| ATTGTTTAGCACAGTGAACC+AGG | 0.556386 | 1_3:-60568557 | Msa0130390:intron |
| TCGAGTTTCATCGAGAGTAA+AGG | 0.562438 | 1_3:+60568499 | None:intergenic |
| GCTCGCAACTATACGTCTCA+TGG | 0.570595 | 1_3:+60566393 | None:intergenic |
| GCCGAAAACAGCGTCAGTGA+AGG | 0.571596 | 1_3:-60569512 | Msa0130390:CDS |
| ATGCCATGTTTCTGACTGGG+TGG | 0.571839 | 1_3:+60570967 | None:intergenic |
| TGTTCGCTAGCCAAATCATC+CGG | 0.572626 | 1_3:+60566940 | None:intergenic |
| AAGAAGAGATGTGATTCCAC+TGG | 0.575695 | 1_3:+60564380 | None:intergenic |
| GAGGAATTGCCTGAGTTGGA+AGG | 0.580797 | 1_3:+60564331 | None:intergenic |
| ATGGGATGCGGATCAACCAT+AGG | 0.581725 | 1_3:-60563789 | Msa0130390:CDS |
| ATTCATTGTTTGCACCTCCA+AGG | 0.583178 | 1_3:+60567040 | None:intergenic |
| GGTTGCTCTGTTTGACAATG+AGG | 0.587175 | 1_3:-60566905 | Msa0130390:CDS |
| CACCGACCAGAGTTGCAGAA+AGG | 0.588992 | 1_3:-60564441 | Msa0130390:CDS |
| ACGTCTCATGGCCTGAAACA+TGG | 0.589765 | 1_3:+60566405 | None:intergenic |
| TTCGGCTTCAGTTTCAGACA+TGG | 0.589778 | 1_3:+60569529 | None:intergenic |
| GAAATGGTGATGATGGTTTG+AGG | 0.591381 | 1_3:+60570886 | None:intergenic |
| GTGAAGAAGTAACGTCCACC+TGG | 0.592016 | 1_3:+60570557 | None:intergenic |
| ATGTTCAGACTTATGGAGGT+GGG | 0.592042 | 1_3:-60569468 | Msa0130390:CDS |
| ATTCGTGGTTAGAAATGACA+TGG | 0.593807 | 1_3:-60563808 | Msa0130390:CDS |
| GTGGAACTAGAATAGGATGT+TGG | 0.595560 | 1_3:-60562867 | Msa0130390:three_prime_UTR |
| GTGTCTGCAGATATGGCCCA+TGG | 0.599082 | 1_3:-60564501 | Msa0130390:CDS |
| TGCTGAGGAAGGGGTGCTAG+TGG | 0.599992 | 1_3:-60562886 | Msa0130390:three_prime_UTR |
| CATAATCCAACCAAATGCTA+GGG | 0.600259 | 1_3:+60562775 | None:intergenic |
| TGTTGTTGAAGGTACAATGT+GGG | 0.607224 | 1_3:-60569589 | Msa0130390:intron |
| TCAAGATGAATGGCAAGAGT+AGG | 0.611001 | 1_3:+60569328 | None:intergenic |
| TTTAGCACAGTGAACCAGGA+AGG | 0.619667 | 1_3:-60568553 | Msa0130390:intron |
| ATCGAGAAGATCGTTAACAA+TGG | 0.623163 | 1_3:+60570770 | None:intergenic |
| AAAATTTGGATGAACTCCAT+GGG | 0.626689 | 1_3:+60564485 | None:intergenic |
| AGCTTGGCAAATAACTATGT+TGG | 0.628527 | 1_3:-60566373 | Msa0130390:CDS |
| CTTTCTGCAACTCTGGTCGG+TGG | 0.630101 | 1_3:+60564442 | None:intergenic |
| AGGTCCAATACTCGCTTCTG+GGG | 0.638373 | 1_3:-60563769 | Msa0130390:CDS |
| AACCAGCGCTATGCTACCAG+TGG | 0.640942 | 1_3:-60564396 | Msa0130390:CDS |
| ATACGTACCTGTATAAGCAG+TGG | 0.647451 | 1_3:+60568415 | None:intergenic |
| TTGTTGTTGAAGGTACAATG+TGG | 0.648797 | 1_3:-60569590 | Msa0130390:intron |
| GTAAATGTTCAGACTTATGG+AGG | 0.649065 | 1_3:-60569472 | Msa0130390:CDS |
| AACCCACCCAGTCAGAAACA+TGG | 0.652324 | 1_3:-60570970 | Msa0130390:exon |
| CATAGACAAGATGCTGACTG+TGG | 0.652971 | 1_3:-60562957 | Msa0130390:CDS |
| TAGCGAACAAGCGATTCGGA+TGG | 0.653246 | 1_3:-60566926 | Msa0130390:CDS |
| TGCTCTGTTTGACAATGAGG+AGG | 0.654956 | 1_3:-60566902 | Msa0130390:intron |
| GAAGAATGGAACCTCAAACC+AGG | 0.655104 | 1_3:-60570575 | Msa0130390:CDS |
| GTGATGAATTTGGGAGATTG+CGG | 0.657176 | 1_3:+60570856 | None:intergenic |
| CTCATGGCCTGAAACATGGT+GGG | 0.659072 | 1_3:+60566409 | None:intergenic |
| TGTGTTGCTGAACATGTGCA+TGG | 0.663234 | 1_3:-60562924 | Msa0130390:three_prime_UTR |
| GAAGAATGGAGAAGAATGTG+CGG | 0.674419 | 1_3:+60570930 | None:intergenic |
| TGCTCTCGGAGCAAATAGAG+AGG | 0.675399 | 1_3:+60562718 | None:intergenic |
| GAATGAAGGTACCTGTGGCG+TGG | 0.675955 | 1_3:+60570721 | None:intergenic |
| TTTACTCTCGATGAAACTCG+AGG | 0.679371 | 1_3:-60568497 | Msa0130390:CDS |
| TATTATAGTTGTGTTTGCTG+AGG | 0.690364 | 1_3:-60562901 | Msa0130390:three_prime_UTR |
| TTCGTGGTTAGAAATGACAT+GGG | 0.700502 | 1_3:-60563807 | Msa0130390:CDS |
| GGCATCCGAACTGTTGACTG+TGG | 0.706184 | 1_3:-60563744 | Msa0130390:CDS |
| GAATGGAACCTCAAACCAGG+TGG | 0.708230 | 1_3:-60570572 | Msa0130390:CDS |
| TCTCATGGCCTGAAACATGG+TGG | 0.711165 | 1_3:+60566408 | None:intergenic |
| CAACTACTATTGCATCACCG+TGG | 0.752449 | 1_3:+60571010 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATAAAAAATAAAAT+TGG | + | chr1_3:60568855-60568874 | None:intergenic | 0.0% |
| !! | TAAGATATTTGTAAAAAAAA+AGG | + | chr1_3:60564564-60564583 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAAATTATTGGTA+AGG | + | chr1_3:60565387-60565406 | None:intergenic | 10.0% |
| !!! | ATTATTTTGGAAATTTTAAA+AGG | - | chr1_3:60565889-60565908 | Msa0130390:intron | 10.0% |
| !! | TATGCTATATATAAAAAAAT+AGG | + | chr1_3:60569768-60569787 | None:intergenic | 10.0% |
| !! | TAGCAATTTCAATTTATATT+TGG | + | chr1_3:60565540-60565559 | None:intergenic | 15.0% |
| !! | ATTCGATTATTAAATTGTAA+TGG | + | chr1_3:60565996-60566015 | None:intergenic | 15.0% |
| !! | AATTTAATAATCGAATGAAT+TGG | - | chr1_3:60566000-60566019 | Msa0130390:intron | 15.0% |
| !! | TAAATATTCATTCATAGAAA+GGG | - | chr1_3:60566077-60566096 | Msa0130390:intron | 15.0% |
| !!! | AATTTTTGTAAAGCAATTAA+AGG | - | chr1_3:60566166-60566185 | Msa0130390:intron | 15.0% |
| !! | AATATCCAAAATAATAAACA+CGG | + | chr1_3:60566317-60566336 | None:intergenic | 15.0% |
| !!! | AACAATGAATTTATTTTTTC+TGG | - | chr1_3:60566617-60566636 | Msa0130390:intron | 15.0% |
| !! | ATAAATAGGATATATCATAA+AGG | + | chr1_3:60567094-60567113 | None:intergenic | 15.0% |
| !! | ATTTGTCATAAATTTATAAG+AGG | + | chr1_3:60567347-60567366 | None:intergenic | 15.0% |
| !!! | TTTTTCGTTTTTTCTATTTT+TGG | - | chr1_3:60567734-60567753 | Msa0130390:intron | 15.0% |
| !!! | TTTTTCGTTTTTTCTATTTT+TGG | + | chr1_3:60567734-60567753 | None:intergenic | 15.0% |
| !!! | ATAAAAAAATAGGAGATTTT+GGG | + | chr1_3:60569758-60569777 | None:intergenic | 15.0% |
| !!! | TATAAAAAAATAGGAGATTT+TGG | + | chr1_3:60569759-60569778 | None:intergenic | 15.0% |
| !! | TATATAGCATAGATTTATTA+AGG | - | chr1_3:60569777-60569796 | Msa0130390:intron | 15.0% |
| !!! | GAAAATTGATATTTTTTTTC+TGG | + | chr1_3:60570145-60570164 | None:intergenic | 15.0% |
| !!! | ATCAATTTTCAATATTTATG+AGG | - | chr1_3:60570155-60570174 | Msa0130390:intron | 15.0% |
| !! | AATATGTAGAATAATAGCAA+TGG | + | chr1_3:60562948-60562967 | None:intergenic | 20.0% |
| !!! | ATTCTTCATTTTCATTAAGA+AGG | + | chr1_3:60563056-60563075 | None:intergenic | 20.0% |
| !! | TTCTTAATGAAAATGAAGAA+TGG | - | chr1_3:60563055-60563074 | Msa0130390:intron | 20.0% |
| !! | TACTTGTAAAAACTAATATC+AGG | + | chr1_3:60563213-60563232 | None:intergenic | 20.0% |
| !! | TAGTTTGACTATAAATAATC+AGG | + | chr1_3:60563346-60563365 | None:intergenic | 20.0% |
| !!! | CTAATTTGCTTATGAAATTT+TGG | - | chr1_3:60563690-60563709 | Msa0130390:intron | 20.0% |
| !! | TAATGTTAGAAATTAATGGA+AGG | - | chr1_3:60563880-60563899 | Msa0130390:intron | 20.0% |
| !!! | TTGTTTTCATAAGCTTTTTT+TGG | + | chr1_3:60564536-60564555 | None:intergenic | 20.0% |
| !! | ATTCATCAAACTAAACATTA+TGG | - | chr1_3:60564673-60564692 | Msa0130390:intron | 20.0% |
| !! | AGTTAATTATAAGCAAATAC+CGG | - | chr1_3:60564916-60564935 | Msa0130390:intron | 20.0% |
| !! | AGGAATACAAAATATGTATA+AGG | + | chr1_3:60565969-60565988 | None:intergenic | 20.0% |
| !! | GTAAATATTCATTCATAGAA+AGG | - | chr1_3:60566076-60566095 | Msa0130390:intron | 20.0% |
| !!! | TAGATAAATAATGGAAAAAG+AGG | - | chr1_3:60566204-60566223 | Msa0130390:intron | 20.0% |
| !!! | GTGTTTATTATTTTGGATAT+TGG | - | chr1_3:60566316-60566335 | Msa0130390:intron | 20.0% |
| !! | AATATCTGAAAATTAAACAC+GGG | + | chr1_3:60566509-60566528 | None:intergenic | 20.0% |
| !! | CAATATCTGAAAATTAAACA+CGG | + | chr1_3:60566510-60566529 | None:intergenic | 20.0% |
| !!! | CTATGATTTTTTTCTTTTAG+GGG | + | chr1_3:60567020-60567039 | None:intergenic | 20.0% |
| !!! | GCTATGATTTTTTTCTTTTA+GGG | + | chr1_3:60567021-60567040 | None:intergenic | 20.0% |
| !!! | TGCTATGATTTTTTTCTTTT+AGG | + | chr1_3:60567022-60567041 | None:intergenic | 20.0% |
| !! | AAAAAAATCATAGCAATCAT+CGG | - | chr1_3:60567027-60567046 | Msa0130390:CDS | 20.0% |
| !! | TTCTGTATTTAAATGTCAAA+GGG | + | chr1_3:60568531-60568550 | None:intergenic | 20.0% |
| !! | TTTCTGTATTTAAATGTCAA+AGG | + | chr1_3:60568530-60568549 | None:intergenic | 20.0% |
| !! | AAAAACAAAAAATCCAGAAA+GGG | + | chr1_3:60567554-60567573 | None:intergenic | 20.0% |
| !! | AAAAAACAAAAAATCCAGAA+AGG | + | chr1_3:60567555-60567574 | None:intergenic | 20.0% |
| !! | GTCATAATTTAAATTTAGGT+TGG | + | chr1_3:60568168-60568187 | None:intergenic | 20.0% |
| !! | GGAAGTCATAATTTAAATTT+AGG | + | chr1_3:60568164-60568183 | None:intergenic | 20.0% |
| !!! | TTTATCTTTTTTTCTTCGTA+CGG | - | chr1_3:60567919-60567938 | Msa0130390:intron | 20.0% |
| !!! | TTTATCTTTTTTTCTTCGTA+CGG | + | chr1_3:60567919-60567938 | None:intergenic | 20.0% |
| !! | GGAAGTCATAATTTAAATTT+AGG | - | chr1_3:60568164-60568183 | Msa0130390:intron | 20.0% |
| !! | GTCATAATTTAAATTTAGGT+TGG | - | chr1_3:60568168-60568187 | Msa0130390:intron | 20.0% |
| !! | TTTCTGTATTTAAATGTCAA+AGG | - | chr1_3:60568530-60568549 | Msa0130390:CDS | 20.0% |
| !! | TTCTGTATTTAAATGTCAAA+GGG | - | chr1_3:60568531-60568550 | Msa0130390:CDS | 20.0% |
| !!! | AAATTATGGATTAGTTAAAG+AGG | - | chr1_3:60568629-60568648 | Msa0130390:intron | 20.0% |
| !!! | AATTATGGATTAGTTAAAGA+GGG | - | chr1_3:60568630-60568649 | Msa0130390:intron | 20.0% |
| !! | TCAGTACTTAAATCTTATTA+AGG | - | chr1_3:60568725-60568744 | Msa0130390:intron | 20.0% |
| !! | CAGTACTTAAATCTTATTAA+GGG | - | chr1_3:60568726-60568745 | Msa0130390:intron | 20.0% |
| !! | AGTACTTAAATCTTATTAAG+GGG | - | chr1_3:60568727-60568746 | Msa0130390:intron | 20.0% |
| !!! | TTATACATGAATTTGTTTCA+GGG | - | chr1_3:60568896-60568915 | Msa0130390:intron | 20.0% |
| !! | GAATACAAAAGTTAATTTAG+TGG | + | chr1_3:60569112-60569131 | None:intergenic | 20.0% |
| !!! | AAAGATAAACATGATTTGTT+GGG | + | chr1_3:60569611-60569630 | None:intergenic | 20.0% |
| !!! | AAAAGATAAACATGATTTGT+TGG | + | chr1_3:60569612-60569631 | None:intergenic | 20.0% |
| !! | TATTATATTTGCCATATTGT+TGG | + | chr1_3:60569644-60569663 | None:intergenic | 20.0% |
| !!! | CTATAGTAATGTTTTTTTGT+TGG | + | chr1_3:60569692-60569711 | None:intergenic | 20.0% |
| !! | CAACAAAAAAACATTACTAT+AGG | - | chr1_3:60569690-60569709 | Msa0130390:intron | 20.0% |
| !!! | TAAAGGTTTTGATAAGTTAT+TGG | + | chr1_3:60569989-60570008 | None:intergenic | 20.0% |
| !!! | TAACCTTTTTTTTTTGTATC+CGG | - | chr1_3:60570110-60570129 | Msa0130390:intron | 20.0% |
| !! | AATAAGACAGAAGAAATTAA+GGG | + | chr1_3:60570446-60570465 | None:intergenic | 20.0% |
| !!! | AGAAAAAAACATTCTGAAAA+AGG | - | chr1_3:60570496-60570515 | Msa0130390:intron | 20.0% |
| !! | TTTGTTCTTAATTTATTAGC+AGG | - | chr1_3:60570987-60571006 | Msa0130390:five_prime_UTR | 20.0% |
| ! | CTCAAATTATATCACTTACT+AGG | - | chr1_3:60563368-60563387 | Msa0130390:intron | 25.0% |
| ! | AGTTAAGTGATATAACTCAT+TGG | + | chr1_3:60563424-60563443 | None:intergenic | 25.0% |
| !!! | TTTTAACTTTACCGAATATG+TGG | - | chr1_3:60563626-60563645 | Msa0130390:intron | 25.0% |
| !!! | TTTGCTTATGAAATTTTGGT+TGG | - | chr1_3:60563694-60563713 | Msa0130390:intron | 25.0% |
| !!! | TTGCTTATGAAATTTTGGTT+GGG | - | chr1_3:60563695-60563714 | Msa0130390:intron | 25.0% |
| ! | GTTGCAATTATAATTGTACA+TGG | + | chr1_3:60563742-60563761 | None:intergenic | 25.0% |
| ! | ACATCAATGTTAGTTCATTA+AGG | + | chr1_3:60563806-60563825 | None:intergenic | 25.0% |
| ! | TTAATGAACTAACATTGATG+TGG | - | chr1_3:60563805-60563824 | Msa0130390:CDS | 25.0% |
| ! | CCATTAATTTCTAACATTAG+AGG | + | chr1_3:60563879-60563898 | None:intergenic | 25.0% |
| ! | CCTCTAATGTTAGAAATTAA+TGG | - | chr1_3:60563876-60563895 | Msa0130390:intron | 25.0% |
| ! | TTGTAATATACCGTTCAAAA+TGG | + | chr1_3:60563907-60563926 | None:intergenic | 25.0% |
| !! | TGAACGGTATATTACAATTT+TGG | - | chr1_3:60563910-60563929 | Msa0130390:intron | 25.0% |
| !! | GAACGGTATATTACAATTTT+GGG | - | chr1_3:60563911-60563930 | Msa0130390:intron | 25.0% |
| !! | AACGGTATATTACAATTTTG+GGG | - | chr1_3:60563912-60563931 | Msa0130390:intron | 25.0% |
| ! | TAAGAGTGAATAAGCATAAT+TGG | + | chr1_3:60563991-60564010 | None:intergenic | 25.0% |
| ! | TCTATTAAAATAAGCACTTG+TGG | - | chr1_3:60564441-60564460 | Msa0130390:CDS | 25.0% |
| ! | GATGATAGTTAGTTAGTATT+GGG | + | chr1_3:60564640-60564659 | None:intergenic | 25.0% |
| ! | TGATGATAGTTAGTTAGTAT+TGG | + | chr1_3:60564641-60564660 | None:intergenic | 25.0% |
| ! | ACAATGAAACAAATATGAGA+CGG | + | chr1_3:60565072-60565091 | None:intergenic | 25.0% |
| !! | CATGCAGAACATTATTATTT+TGG | - | chr1_3:60565876-60565895 | Msa0130390:intron | 25.0% |
| !! | AAAATCACAGAATTTTCCAT+GGG | + | chr1_3:60565923-60565942 | None:intergenic | 25.0% |
| !!! | TATTAAATTGTAATGGACTG+AGG | + | chr1_3:60565989-60566008 | None:intergenic | 25.0% |
| ! | AGTCAAATAAGTTTATCTCT+TGG | - | chr1_3:60566351-60566370 | Msa0130390:CDS | 25.0% |
| ! | TAGCAATTGATATTGTACAA+TGG | - | chr1_3:60566379-60566398 | Msa0130390:CDS | 25.0% |
| ! | AGCAATTGATATTGTACAAT+GGG | - | chr1_3:60566380-60566399 | Msa0130390:CDS | 25.0% |
| !! | TAATTTTCAGATATTGTCAG+AGG | - | chr1_3:60566514-60566533 | Msa0130390:intron | 25.0% |
| ! | GATATATCCTATTTATGAGT+TGG | - | chr1_3:60567098-60567117 | Msa0130390:CDS | 25.0% |
| ! | CATTATACCAACTCATAAAT+AGG | + | chr1_3:60567108-60567127 | None:intergenic | 25.0% |
| ! | GTCATAAATTTATAAGAGGA+TGG | + | chr1_3:60567343-60567362 | None:intergenic | 25.0% |
| !!! | TTGGAAAATTTTTTGGTAAC+TGG | + | chr1_3:60567494-60567513 | None:intergenic | 25.0% |
| !!! | GTCAGATTTGGAAAATTTTT+TGG | + | chr1_3:60567501-60567520 | None:intergenic | 25.0% |
| ! | TCTGTATTTAAATGTCAAAG+GGG | + | chr1_3:60568532-60568551 | None:intergenic | 25.0% |
| ! | AAAACAAAAAATCCAGAAAG+GGG | + | chr1_3:60568503-60568522 | None:intergenic | 25.0% |
| ! | AAAGATAAATTATGTGCTAC+AGG | + | chr1_3:60568143-60568162 | None:intergenic | 25.0% |
| !!! | TTATCTTTTTTTCTTCGTAC+GGG | - | chr1_3:60567920-60567939 | Msa0130390:intron | 25.0% |
| !! | CATATCTGAAATTCAAAATG+AGG | + | chr1_3:60568011-60568030 | None:intergenic | 25.0% |
| !! | CTCATTTTGAATTTCAGATA+TGG | - | chr1_3:60568009-60568028 | Msa0130390:intron | 25.0% |
| !!! | TTATCTTTTTTTCTTCGTAC+GGG | + | chr1_3:60567920-60567939 | None:intergenic | 25.0% |
| ! | AAAGATAAATTATGTGCTAC+AGG | - | chr1_3:60568143-60568162 | Msa0130390:intron | 25.0% |
| !! | TTTTATTCATTACTGCAGTT+TGG | + | chr1_3:60568387-60568406 | None:intergenic | 25.0% |
| ! | ACAAAACAAAAAATCCAGAA+AGG | - | chr1_3:60568501-60568520 | Msa0130390:CDS | 25.0% |
| ! | CAAAACAAAAAATCCAGAAA+GGG | - | chr1_3:60568502-60568521 | Msa0130390:CDS | 25.0% |
| ! | AAAACAAAAAATCCAGAAAG+GGG | - | chr1_3:60568503-60568522 | Msa0130390:CDS | 25.0% |
| ! | TCTGTATTTAAATGTCAAAG+GGG | - | chr1_3:60568532-60568551 | Msa0130390:CDS | 25.0% |
| !!! | GTCAGATTTGGAAATTTTTT+TGG | - | chr1_3:60568555-60568574 | Msa0130390:intron | 25.0% |
| !!! | TTGGAAATTTTTTTGGTAAG+TGG | - | chr1_3:60568562-60568581 | Msa0130390:intron | 25.0% |
| !!! | TGGAAATTTTTTTGGTAAGT+GGG | - | chr1_3:60568563-60568582 | Msa0130390:intron | 25.0% |
| !!! | AGATTTAAGTACTGAACAAA+TGG | + | chr1_3:60568720-60568739 | None:intergenic | 25.0% |
| ! | TTCTGTTTACTAGATCTATT+GGG | - | chr1_3:60568802-60568821 | Msa0130390:intron | 25.0% |
| !! | GGGATGTCAATTTAAATTTT+TGG | - | chr1_3:60568822-60568841 | Msa0130390:intron | 25.0% |
| !! | CTTATACATGAATTTGTTTC+AGG | - | chr1_3:60568895-60568914 | Msa0130390:intron | 25.0% |
| !!! | TCTCTTCTTTTTAAAGAAGT+TGG | - | chr1_3:60569278-60569297 | Msa0130390:intron | 25.0% |
| !!! | CTCTTCTTTTTAAAGAAGTT+GGG | - | chr1_3:60569279-60569298 | Msa0130390:intron | 25.0% |
| ! | CAAAATGAGAAATAATAGAG+AGG | + | chr1_3:60569335-60569354 | None:intergenic | 25.0% |
| !! | TCTATTGCTAGAGATTATTT+TGG | + | chr1_3:60569454-60569473 | None:intergenic | 25.0% |
| ! | ACACTAGCAAAATTTATGAA+TGG | - | chr1_3:60569514-60569533 | Msa0130390:CDS | 25.0% |
| !! | ACTATAGGAAAATTTGTTCA+AGG | - | chr1_3:60569705-60569724 | Msa0130390:intron | 25.0% |
| !! | CTATAGGAAAATTTGTTCAA+GGG | - | chr1_3:60569706-60569725 | Msa0130390:intron | 25.0% |
| !! | GGTTACAATTTATACCTTTT+TGG | + | chr1_3:60570042-60570061 | None:intergenic | 25.0% |
| !!! | AACCTTTTTTTTTTGTATCC+GGG | - | chr1_3:60570111-60570130 | Msa0130390:intron | 25.0% |
| ! | ATAAGACAGAAGAAATTAAG+GGG | + | chr1_3:60570445-60570464 | None:intergenic | 25.0% |
| ! | CAATAAGACAGAAGAAATTA+AGG | + | chr1_3:60570447-60570466 | None:intergenic | 25.0% |
| ! | GACAATCTATATAATATCCT+TGG | + | chr1_3:60570563-60570582 | None:intergenic | 25.0% |
| ! | AATGTATTAACAAATGCTCT+CGG | + | chr1_3:60570943-60570962 | None:intergenic | 25.0% |
| ! | CATTAAAACGATTAGAATCT+TGG | - | chr1_3:60570959-60570978 | Msa0130390:exon | 25.0% |
| GAATGAAGTGTGATGAATTT+GGG | + | chr1_3:60562800-60562819 | None:intergenic | 30.0% | |
| AAGATCGTTAACAATGGAAA+CGG | + | chr1_3:60562871-60562890 | None:intergenic | 30.0% | |
| GAATAATAGCAATGGAATGA+AGG | + | chr1_3:60562940-60562959 | None:intergenic | 30.0% | |
| ACAGTAAGCGATATAATTCA+AGG | + | chr1_3:60563457-60563476 | None:intergenic | 30.0% | |
| ACATCAATGCTACCATATTT+GGG | - | chr1_3:60563666-60563685 | Msa0130390:intron | 30.0% | |
| AAGCAAATTAGTCCCAAATA+TGG | + | chr1_3:60563681-60563700 | None:intergenic | 30.0% | |
| ! | ATTGTACATGGACTAATTAC+TGG | + | chr1_3:60563730-60563749 | None:intergenic | 30.0% |
| ! | CTGATTTGCCTTAGAAATTT+AGG | + | chr1_3:60563782-60563801 | None:intergenic | 30.0% |
| CTCTTATTATTATCTGCTGA+TGG | - | chr1_3:60564005-60564024 | Msa0130390:intron | 30.0% | |
| ATGGTAAATGTTCAGACTTA+TGG | - | chr1_3:60564169-60564188 | Msa0130390:intron | 30.0% | |
| ATGAATGTGAGTTATAGTAC+CGG | + | chr1_3:60564342-60564361 | None:intergenic | 30.0% | |
| TTCAATTACAACTCCTACTT+AGG | - | chr1_3:60564390-60564409 | Msa0130390:CDS | 30.0% | |
| CTAACAATAAAAACAGGCTA+TGG | + | chr1_3:60564509-60564528 | None:intergenic | 30.0% | |
| ACATGCATTACAAATCATAG+GGG | + | chr1_3:60564775-60564794 | None:intergenic | 30.0% | |
| CACATGCATTACAAATCATA+GGG | + | chr1_3:60564776-60564795 | None:intergenic | 30.0% | |
| ACACATGCATTACAAATCAT+AGG | + | chr1_3:60564777-60564796 | None:intergenic | 30.0% | |
| GATGAATAAATCAGTGGTTA+AGG | + | chr1_3:60564815-60564834 | None:intergenic | 30.0% | |
| !! | ACCACTGATTTATTCATCAA+TGG | - | chr1_3:60564817-60564836 | Msa0130390:intron | 30.0% |
| ACCATTGATGAATAAATCAG+TGG | + | chr1_3:60564821-60564840 | None:intergenic | 30.0% | |
| ! | AGGATAGAACAAATGTTTTC+CGG | + | chr1_3:60564938-60564957 | None:intergenic | 30.0% |
| AAACATTTGTTCTATCCTTG+AGG | - | chr1_3:60564940-60564959 | Msa0130390:intron | 30.0% | |
| AACATTTGTTCTATCCTTGA+GGG | - | chr1_3:60564941-60564960 | Msa0130390:intron | 30.0% | |
| AGAAGATGAGTCTCAAAATT+TGG | + | chr1_3:60565124-60565143 | None:intergenic | 30.0% | |
| TTCAAACTCAAGTCAAAAGA+AGG | + | chr1_3:60565262-60565281 | None:intergenic | 30.0% | |
| AATTATTGGTAAGGTATGCA+TGG | + | chr1_3:60565378-60565397 | None:intergenic | 30.0% | |
| AAGAAATCGATAGTTGTAGA+TGG | + | chr1_3:60565438-60565457 | None:intergenic | 30.0% | |
| TTCTATCTTCTACTGAATCT+AGG | + | chr1_3:60565492-60565511 | None:intergenic | 30.0% | |
| GCTATATACTATAGTTCCTT+AGG | - | chr1_3:60565556-60565575 | Msa0130390:intron | 30.0% | |
| !!! | TAGTTGGTTTTCCTATTCTT+CGG | - | chr1_3:60565676-60565695 | Msa0130390:intron | 30.0% |
| ! | GAAAATCACAGAATTTTCCA+TGG | + | chr1_3:60565924-60565943 | None:intergenic | 30.0% |
| ! | GATTTTCTTAACCAATGTCT+TGG | - | chr1_3:60565937-60565956 | Msa0130390:intron | 30.0% |
| TAAGGAAAATACCAAGACAT+TGG | + | chr1_3:60565951-60565970 | None:intergenic | 30.0% | |
| ATATTCGCATGCATTTCAAT+AGG | + | chr1_3:60566041-60566060 | None:intergenic | 30.0% | |
| GCAGAGTAGTAGATAAATAA+TGG | - | chr1_3:60566195-60566214 | Msa0130390:intron | 30.0% | |
| TGAATTCAAGTGTCATCATT+GGG | + | chr1_3:60566291-60566310 | None:intergenic | 30.0% | |
| ATGAATTCAAGTGTCATCAT+TGG | + | chr1_3:60566292-60566311 | None:intergenic | 30.0% | |
| ! | CATAGCCGTGTTTATTATTT+TGG | - | chr1_3:60566309-60566328 | Msa0130390:intron | 30.0% |
| ! | TCTTTTGCACACTTAAGTAT+CGG | - | chr1_3:60566805-60566824 | Msa0130390:intron | 30.0% |
| TTTCCATCAGTTTGAAAGAA+CGG | + | chr1_3:60566967-60566986 | None:intergenic | 30.0% | |
| TGCGTGTAATTCCAATATTA+AGG | - | chr1_3:60567391-60567410 | Msa0130390:intron | 30.0% | |
| GCGTGTAATTCCAATATTAA+GGG | - | chr1_3:60567392-60567411 | Msa0130390:intron | 30.0% | |
| TTGCAATCAACCCTTAATAT+TGG | + | chr1_3:60567405-60567424 | None:intergenic | 30.0% | |
| TAGCTATGCTCTATAATAGA+AGG | + | chr1_3:60567442-60567461 | None:intergenic | 30.0% | |
| CTGTATTTAAATGTCAAAGG+GGG | + | chr1_3:60568533-60568552 | None:intergenic | 30.0% | |
| AAACAAAAAATCCAGAAAGG+GGG | + | chr1_3:60568504-60568523 | None:intergenic | 30.0% | |
| ! | TTTTATTCATTACCGCAGTT+TGG | - | chr1_3:60567686-60567705 | Msa0130390:intron | 30.0% |
| AATAAAAACTACTTTCTCCG+CGG | - | chr1_3:60567845-60567864 | Msa0130390:intron | 30.0% | |
| !! | TAAATTTAGGTTGGCGTAAA+TGG | + | chr1_3:60568177-60568196 | None:intergenic | 30.0% |
| ! | ATCTGAAATTCAAAATGAGG+AGG | + | chr1_3:60568008-60568027 | None:intergenic | 30.0% |
| TGCAAACACATATCAAAATG+AGG | - | chr1_3:60568034-60568053 | Msa0130390:intron | 30.0% | |
| AAACACATATCAAAATGAGG+AGG | - | chr1_3:60568037-60568056 | Msa0130390:intron | 30.0% | |
| !! | TAAATTTAGGTTGGCGTAAA+TGG | - | chr1_3:60568177-60568196 | Msa0130390:intron | 30.0% |
| AATAAAAACTACTTTCTCCG+CGG | + | chr1_3:60567845-60567864 | None:intergenic | 30.0% | |
| AAACAAAAAATCCAGAAAGG+GGG | - | chr1_3:60568504-60568523 | Msa0130390:CDS | 30.0% | |
| CTGTATTTAAATGTCAAAGG+GGG | - | chr1_3:60568533-60568552 | Msa0130390:CDS | 30.0% | |
| TCCAAAGAAAGCTCAAATTA+TGG | - | chr1_3:60568615-60568634 | Msa0130390:intron | 30.0% | |
| TCCATAATTTGAGCTTTCTT+TGG | + | chr1_3:60568619-60568638 | None:intergenic | 30.0% | |
| ATGGCTGAAATTGATAAAAG+AGG | - | chr1_3:60568669-60568688 | Msa0130390:intron | 30.0% | |
| CAGAAACAGAATAAATGCTA+GGG | + | chr1_3:60568775-60568794 | None:intergenic | 30.0% | |
| CTTCTGTTTACTAGATCTAT+TGG | - | chr1_3:60568801-60568820 | Msa0130390:intron | 30.0% | |
| ATATTGCAGGACGAAATTAT+CGG | + | chr1_3:60568936-60568955 | None:intergenic | 30.0% | |
| ! | TGATAAAAGAGCACATTCAA+TGG | - | chr1_3:60569002-60569021 | Msa0130390:intron | 30.0% |
| AAAATTTGGATGAACTCCAT+GGG | + | chr1_3:60569162-60569181 | None:intergenic | 30.0% | |
| TCATGCTTATCTGCAAAATT+TGG | + | chr1_3:60569176-60569195 | None:intergenic | 30.0% | |
| TTTCAATGTCACCAACAATA+TGG | - | chr1_3:60569630-60569649 | Msa0130390:intron | 30.0% | |
| !! | AAAAATAGGAGATTTTGGGT+TGG | + | chr1_3:60569754-60569773 | None:intergenic | 30.0% |
| ! | ATATTTTGTCTACTCTCTGT+AGG | - | chr1_3:60569812-60569831 | Msa0130390:intron | 30.0% |
| CATATGACAAGGTTTCATAA+AGG | + | chr1_3:60570006-60570025 | None:intergenic | 30.0% | |
| GTATAAATTGTAACCATGTC+TGG | - | chr1_3:60570047-60570066 | Msa0130390:intron | 30.0% | |
| TTCCCGGATACAAAAAAAAA+AGG | + | chr1_3:60570116-60570135 | None:intergenic | 30.0% | |
| !! | TGAGGTTTGACTTAATCTTT+TGG | - | chr1_3:60570173-60570192 | Msa0130390:intron | 30.0% |
| !!! | TGACTTAATCTTTTGGAATC+AGG | - | chr1_3:60570180-60570199 | Msa0130390:intron | 30.0% |
| !!! | AATCTTTTGGAATCAGGTAT+TGG | - | chr1_3:60570186-60570205 | Msa0130390:intron | 30.0% |
| GTAAGGCAACAAATATTGAA+TGG | + | chr1_3:60570287-60570306 | None:intergenic | 30.0% | |
| ! | AATATTTGTTGCCTTACTCT+TGG | - | chr1_3:60570290-60570309 | Msa0130390:intron | 30.0% |
| CATATATAATATTAGCCGAG+CGG | + | chr1_3:60570419-60570438 | None:intergenic | 30.0% | |
| TAAGACAGAAGAAATTAAGG+GGG | + | chr1_3:60570444-60570463 | None:intergenic | 30.0% | |
| ! | CTATATAATATCCTTGGTGT+AGG | + | chr1_3:60570557-60570576 | None:intergenic | 30.0% |
| TGCAGTATAAGAGAAATATG+TGG | - | chr1_3:60570604-60570623 | Msa0130390:CDS | 30.0% | |
| GCAGTATAAGAGAAATATGT+GGG | - | chr1_3:60570605-60570624 | Msa0130390:CDS | 30.0% | |
| ! | TATTATAGTTGTGTTTGCTG+AGG | - | chr1_3:60570743-60570762 | Msa0130390:CDS | 30.0% |
| !! | TTTTAGGAGAACTTTGTTCT+CGG | + | chr1_3:60570828-60570847 | None:intergenic | 30.0% |
| !! | AGTTCATTTGCTAAGGTTTT+AGG | + | chr1_3:60570844-60570863 | None:intergenic | 30.0% |
| CGAATGAAGTGTGATGAATT+TGG | + | chr1_3:60562801-60562820 | None:intergenic | 35.0% | |
| !! | TTTTGAAGATGTGGAATTGG+TGG | + | chr1_3:60562841-60562860 | None:intergenic | 35.0% |
| !! | GGATTTTGAAGATGTGGAAT+TGG | + | chr1_3:60562844-60562863 | None:intergenic | 35.0% |
| ! | GTTAACAATGGAAACGGATT+GGG | + | chr1_3:60562865-60562884 | None:intergenic | 35.0% |
| ATCGAGAAGATCGTTAACAA+TGG | + | chr1_3:60562877-60562896 | None:intergenic | 35.0% | |
| TCGATTATCTCAACGAATCT+TGG | - | chr1_3:60562892-60562911 | Msa0130390:three_prime_UTR | 35.0% | |
| ! | TTCAGAAGGAAGGGTATAAA+TGG | + | chr1_3:60562971-60562990 | None:intergenic | 35.0% |
| !! | AAGGTTAGTTTCAGAAGGAA+GGG | + | chr1_3:60562980-60562999 | None:intergenic | 35.0% |
| !! | AAAGGTTAGTTTCAGAAGGA+AGG | + | chr1_3:60562981-60563000 | None:intergenic | 35.0% |
| ! | CACTCGTAATATGTCTTGTT+TGG | - | chr1_3:60563107-60563126 | Msa0130390:intron | 35.0% |
| !! | TGAAACTCACTTTTGTCCAA+CGG | + | chr1_3:60563142-60563161 | None:intergenic | 35.0% |
| TAGCTCAACTGATAGAAATG+TGG | + | chr1_3:60563171-60563190 | None:intergenic | 35.0% | |
| CTCGACATAATTCAAAATCG+TGG | + | chr1_3:60563297-60563316 | None:intergenic | 35.0% | |
| ! | TTCTACTAACTTGTAAGGAC+TGG | + | chr1_3:60563484-60563503 | None:intergenic | 35.0% |
| AGTCCTTACAAGTTAGTAGA+AGG | - | chr1_3:60563483-60563502 | Msa0130390:intron | 35.0% | |
| TTAGTAGAAGGACCAAGTTA+TGG | - | chr1_3:60563495-60563514 | Msa0130390:intron | 35.0% | |
| TAGTAGAAGGACCAAGTTAT+GGG | - | chr1_3:60563496-60563515 | Msa0130390:intron | 35.0% | |
| GAATAGGCAAAAAAAGACCT+TGG | + | chr1_3:60563535-60563554 | None:intergenic | 35.0% | |
| TTGCCTATTCGCAAATTACA+AGG | - | chr1_3:60563545-60563564 | Msa0130390:intron | 35.0% | |
| TGCCTATTCGCAAATTACAA+GGG | - | chr1_3:60563546-60563565 | Msa0130390:intron | 35.0% | |
| !! | CAAATATGGTAGCATTGATG+TGG | + | chr1_3:60563667-60563686 | None:intergenic | 35.0% |
| CACATCAATGCTACCATATT+TGG | - | chr1_3:60563665-60563684 | Msa0130390:intron | 35.0% | |
| CTTAGAAATTTAGGTCATCG+GGG | + | chr1_3:60563773-60563792 | None:intergenic | 35.0% | |
| CCTTAGAAATTTAGGTCATC+GGG | + | chr1_3:60563774-60563793 | None:intergenic | 35.0% | |
| GCCTTAGAAATTTAGGTCAT+CGG | + | chr1_3:60563775-60563794 | None:intergenic | 35.0% | |
| ! | AATGGAAGGACCATTTTGAA+CGG | - | chr1_3:60563894-60563913 | Msa0130390:intron | 35.0% |
| !! | TTATTATCTGCTGATGGACT+TGG | - | chr1_3:60564011-60564030 | Msa0130390:intron | 35.0% |
| TCAACAACAACAACAAAGCA+GGG | + | chr1_3:60564044-60564063 | None:intergenic | 35.0% | |
| TTCAACAACAACAACAAAGC+AGG | + | chr1_3:60564045-60564064 | None:intergenic | 35.0% | |
| !! | TGCTTTGTTGTTGTTGTTGA+AGG | - | chr1_3:60564044-60564063 | Msa0130390:intron | 35.0% |
| ! | TTGTTGTTGAAGGTACAATG+TGG | - | chr1_3:60564054-60564073 | Msa0130390:intron | 35.0% |
| ! | TGTTGTTGAAGGTACAATGT+GGG | - | chr1_3:60564055-60564074 | Msa0130390:intron | 35.0% |
| GAAGGCTTCTTCTTATATGA+TGG | - | chr1_3:60564150-60564169 | Msa0130390:intron | 35.0% | |
| GTAAATGTTCAGACTTATGG+AGG | - | chr1_3:60564172-60564191 | Msa0130390:intron | 35.0% | |
| ! | TATGGCATACTTGGTTTGAT+AGG | - | chr1_3:60564200-60564219 | Msa0130390:intron | 35.0% |
| ! | ATGGCATACTTGGTTTGATA+GGG | - | chr1_3:60564201-60564220 | Msa0130390:intron | 35.0% |
| AGAGTAGGAATACGCAAAAT+GGG | + | chr1_3:60564304-60564323 | None:intergenic | 35.0% | |
| AAGAGTAGGAATACGCAAAA+TGG | + | chr1_3:60564305-60564324 | None:intergenic | 35.0% | |
| GGAGAGCTAACAATAAAAAC+AGG | + | chr1_3:60564515-60564534 | None:intergenic | 35.0% | |
| ! | AGTTAGTATTGGGTCATGTT+TGG | + | chr1_3:60564630-60564649 | None:intergenic | 35.0% |
| CTAAACATTATGGTTCAGTG+AGG | - | chr1_3:60564683-60564702 | Msa0130390:intron | 35.0% | |
| AATCAGTGGTTAAGGACTTA+AGG | + | chr1_3:60564807-60564826 | None:intergenic | 35.0% | |
| TGGTTAATCACTTACTTCAG+AGG | - | chr1_3:60564837-60564856 | Msa0130390:intron | 35.0% | |
| !! | AATTTGGTTTGAAACCTTCC+TGG | + | chr1_3:60565108-60565127 | None:intergenic | 35.0% |
| GAACACGAAAGATTGTTCAA+AGG | + | chr1_3:60565310-60565329 | None:intergenic | 35.0% | |
| TGAACAATCTTTCGTGTTCA+TGG | - | chr1_3:60565311-60565330 | Msa0130390:intron | 35.0% | |
| TGTTCATGGATTCAAACTAG+TGG | - | chr1_3:60565325-60565344 | Msa0130390:intron | 35.0% | |
| CTGTACTACGAGGAAAAAAT+GGG | + | chr1_3:60565469-60565488 | None:intergenic | 35.0% | |
| AGATATCTATGCTGTACCTA+AGG | + | chr1_3:60565575-60565594 | None:intergenic | 35.0% | |
| ATAGGAAAACCAACTATAGC+AGG | + | chr1_3:60565672-60565691 | None:intergenic | 35.0% | |
| !!! | AGTTGGTTTTCCTATTCTTC+GGG | - | chr1_3:60565677-60565696 | Msa0130390:intron | 35.0% |
| ATCACAACCAGATATCAGTA+TGG | - | chr1_3:60565705-60565724 | Msa0130390:intron | 35.0% | |
| TACAGTACCATACTGATATC+TGG | + | chr1_3:60565715-60565734 | None:intergenic | 35.0% | |
| GCAATAACAACTCAAGAATG+TGG | + | chr1_3:60565759-60565778 | None:intergenic | 35.0% | |
| CATTGAGACCTTTCAAATCA+CGG | - | chr1_3:60565794-60565813 | Msa0130390:intron | 35.0% | |
| ATTGAGACCTTTCAAATCAC+GGG | - | chr1_3:60565795-60565814 | Msa0130390:intron | 35.0% | |
| TATAAGACCCGTGATTTGAA+AGG | + | chr1_3:60565805-60565824 | None:intergenic | 35.0% | |
| ! | AAATCACGGGTCTTATACTT+GGG | - | chr1_3:60565808-60565827 | Msa0130390:intron | 35.0% |
| TGAAATGCATGCGAATATGT+TGG | - | chr1_3:60566043-60566062 | Msa0130390:intron | 35.0% | |
| !! | CAAAGAGCATTATGTGGAAT+TGG | - | chr1_3:60566230-60566249 | Msa0130390:intron | 35.0% |
| GCAAGCTACATTTAATGTCA+GGG | + | chr1_3:60566455-60566474 | None:intergenic | 35.0% | |
| AGCAAGCTACATTTAATGTC+AGG | + | chr1_3:60566456-60566475 | None:intergenic | 35.0% | |
| ! | TTCAAGTTATTGCGCATTGA+GGG | - | chr1_3:60566658-60566677 | Msa0130390:intron | 35.0% |
| GAAAGAACGGTTTATTGCAT+AGG | + | chr1_3:60566954-60566973 | None:intergenic | 35.0% | |
| AAACCGTTCTTTCAAACTGA+TGG | - | chr1_3:60566961-60566980 | Msa0130390:CDS | 35.0% | |
| AGCTTGGCAAATAACTATGT+TGG | - | chr1_3:60567271-60567290 | Msa0130390:intron | 35.0% | |
| ! | GCAAATAACTATGTTGGTGA+AGG | - | chr1_3:60567277-60567296 | Msa0130390:intron | 35.0% |
| ACTATACGCCAATCATTTCT+CGG | - | chr1_3:60567313-60567332 | Msa0130390:intron | 35.0% | |
| ATGGTATACCGAGAAATGAT+TGG | + | chr1_3:60567324-60567343 | None:intergenic | 35.0% | |
| ! | AATTTGAAACTGCGGTAATG+AGG | + | chr1_3:60568472-60568491 | None:intergenic | 35.0% |
| ATTACCGCAGTTTCAAATTG+CGG | - | chr1_3:60567592-60567611 | Msa0130390:intron | 35.0% | |
| ! | ATTACCGCAATTTGAAACTG+CGG | + | chr1_3:60568464-60568483 | None:intergenic | 35.0% |
| ATTACTACAGTTCCAAACTG+CGG | + | chr1_3:60567701-60567720 | None:intergenic | 35.0% | |
| TGAAATTCAAAATGAGGAGG+TGG | + | chr1_3:60568005-60568024 | None:intergenic | 35.0% | |
| ! | ATTACCGCAATTTGAAACTG+CGG | - | chr1_3:60568464-60568483 | Msa0130390:CDS | 35.0% |
| ATTACCGCAGTTTCAAATTG+CGG | + | chr1_3:60567592-60567611 | None:intergenic | 35.0% | |
| ! | AATTTGAAACTGCGGTAATG+AGG | - | chr1_3:60568472-60568491 | Msa0130390:CDS | 35.0% |
| !! | TGGATTAGTTAAAGAGGGTA+TGG | - | chr1_3:60568635-60568654 | Msa0130390:intron | 35.0% |
| !! | GGATTAGTTAAAGAGGGTAT+GGG | - | chr1_3:60568636-60568655 | Msa0130390:intron | 35.0% |
| ! | GATTAGTTAAAGAGGGTATG+GGG | - | chr1_3:60568637-60568656 | Msa0130390:intron | 35.0% |
| ! | TAAGGGGTGTAATGTGATTA+AGG | - | chr1_3:60568743-60568762 | Msa0130390:intron | 35.0% |
| CCAGAAACAGAATAAATGCT+AGG | + | chr1_3:60568776-60568795 | None:intergenic | 35.0% | |
| CCTAGCATTTATTCTGTTTC+TGG | - | chr1_3:60568773-60568792 | Msa0130390:intron | 35.0% | |
| GATAATTTCGTCCTGCAATA+TGG | - | chr1_3:60568935-60568954 | Msa0130390:intron | 35.0% | |
| TCTCCCATGATATTCTGAAT+GGG | - | chr1_3:60569085-60569104 | Msa0130390:intron | 35.0% | |
| CAAAATTTGGATGAACTCCA+TGG | + | chr1_3:60569163-60569182 | None:intergenic | 35.0% | |
| ATTCGTGGTTAGAAATGACA+TGG | - | chr1_3:60569836-60569855 | Msa0130390:intron | 35.0% | |
| TTCGTGGTTAGAAATGACAT+GGG | - | chr1_3:60569837-60569856 | Msa0130390:intron | 35.0% | |
| !!! | TTTTTTCTGGACTCATTTCC+CGG | + | chr1_3:60570132-60570151 | None:intergenic | 35.0% |
| ! | CAAATATTGAATGGTAACGC+AGG | + | chr1_3:60570278-60570297 | None:intergenic | 35.0% |
| ATCTAGACATGCTTCACAAT+TGG | - | chr1_3:60570367-60570386 | Msa0130390:intron | 35.0% | |
| ! | GGAAGAAAGTTCATTTGCTA+AGG | + | chr1_3:60570851-60570870 | None:intergenic | 35.0% |
| CATAATCCAACCAAATGCTA+GGG | + | chr1_3:60570872-60570891 | None:intergenic | 35.0% | |
| ! | TTGATGCCATGTTTCTGACT+GGG | + | chr1_3:60562683-60562702 | None:intergenic | 40.0% |
| GAAGAATGGAGAAGAATGTG+CGG | + | chr1_3:60562717-60562736 | None:intergenic | 40.0% | |
| ! | TGAGTGATGGAGATGAAGAA+TGG | + | chr1_3:60562731-60562750 | None:intergenic | 40.0% |
| TTGAGGTTGAGTTTGAGTGA+TGG | + | chr1_3:60562744-60562763 | None:intergenic | 40.0% | |
| !! | GAAATGGTGATGATGGTTTG+AGG | + | chr1_3:60562761-60562780 | None:intergenic | 40.0% |
| GTGATGAATTTGGGAGATTG+CGG | + | chr1_3:60562791-60562810 | None:intergenic | 40.0% | |
| !! | GGATTGGGATTTTGAAGATG+TGG | + | chr1_3:60562850-60562869 | None:intergenic | 40.0% |
| CGTTAACAATGGAAACGGAT+TGG | + | chr1_3:60562866-60562885 | None:intergenic | 40.0% | |
| !! | GCGAAAAGGTTAGTTTCAGA+AGG | + | chr1_3:60562985-60563004 | None:intergenic | 40.0% |
| AAACGACAATTAATCGCAGC+TGG | - | chr1_3:60563024-60563043 | Msa0130390:CDS | 40.0% | |
| ACAATTTCAGGGGGGAAAAT+TGG | + | chr1_3:60563241-60563260 | None:intergenic | 40.0% | |
| ! | ATTTTCCCCCCTGAAATTGT+AGG | - | chr1_3:60563241-60563260 | Msa0130390:intron | 40.0% |
| ! | ATCGACTCCTACAATTTCAG+GGG | + | chr1_3:60563251-60563270 | None:intergenic | 40.0% |
| ! | GATCGACTCCTACAATTTCA+GGG | + | chr1_3:60563252-60563271 | None:intergenic | 40.0% |
| ! | TGATCGACTCCTACAATTTC+AGG | + | chr1_3:60563253-60563272 | None:intergenic | 40.0% |
| TGTCGAGCAACTTGATCATT+CGG | - | chr1_3:60563310-60563329 | Msa0130390:intron | 40.0% | |
| ! | GGTCCTTCTACTAACTTGTA+AGG | + | chr1_3:60563489-60563508 | None:intergenic | 40.0% |
| TTGAATGACGTCCCATAACT+TGG | + | chr1_3:60563510-60563529 | None:intergenic | 40.0% | |
| ! | CACCCTTGTAATTTGCGAAT+AGG | + | chr1_3:60563551-60563570 | None:intergenic | 40.0% |
| TACGTAGAGGACCACATATT+CGG | + | chr1_3:60563640-60563659 | None:intergenic | 40.0% | |
| TTGATGTGGAATCTACGTAG+AGG | + | chr1_3:60563653-60563672 | None:intergenic | 40.0% | |
| CCCGATGACCTAAATTTCTA+AGG | - | chr1_3:60563771-60563790 | Msa0130390:CDS | 40.0% | |
| TGCGATATGTTTAGTCAACG+TGG | - | chr1_3:60563841-60563860 | Msa0130390:intron | 40.0% | |
| ! | TGAAGGTACAATGTGGGTAA+TGG | - | chr1_3:60564061-60564080 | Msa0130390:intron | 40.0% |
| AATGTTCAGACTTATGGAGG+TGG | - | chr1_3:60564175-60564194 | Msa0130390:intron | 40.0% | |
| ATGTTCAGACTTATGGAGGT+GGG | - | chr1_3:60564176-60564195 | Msa0130390:intron | 40.0% | |
| TCAAGATGAATGGCAAGAGT+AGG | + | chr1_3:60564319-60564338 | None:intergenic | 40.0% | |
| !! | ATAGTACCGGTCAAGATGAA+TGG | + | chr1_3:60564329-60564348 | None:intergenic | 40.0% |
| AACTCCTACTTAGGCTTCTT+TGG | - | chr1_3:60564399-60564418 | Msa0130390:CDS | 40.0% | |
| CAATCCAAAGAAGCCTAAGT+AGG | + | chr1_3:60564406-60564425 | None:intergenic | 40.0% | |
| CTTGTGGTGAGACTGTTTAT+CGG | - | chr1_3:60564457-60564476 | Msa0130390:CDS | 40.0% | |
| TTGAGACTACTGCTCACTTT+AGG | + | chr1_3:60564716-60564735 | None:intergenic | 40.0% | |
| AAAACCAGACATTTCCCTCA+AGG | + | chr1_3:60564958-60564977 | None:intergenic | 40.0% | |
| ATTGTTTAGCACAGTGAACC+AGG | - | chr1_3:60565087-60565106 | Msa0130390:intron | 40.0% | |
| TCGAGTTTCATCGAGAGTAA+AGG | + | chr1_3:60565148-60565167 | None:intergenic | 40.0% | |
| TTTACTCTCGATGAAACTCG+AGG | - | chr1_3:60565147-60565166 | Msa0130390:intron | 40.0% | |
| TCATCATCCACTGCTTATAC+AGG | - | chr1_3:60565222-60565241 | Msa0130390:intron | 40.0% | |
| ATACGTACCTGTATAAGCAG+TGG | + | chr1_3:60565232-60565251 | None:intergenic | 40.0% | |
| GCTGTACTACGAGGAAAAAA+TGG | + | chr1_3:60565470-60565489 | None:intergenic | 40.0% | |
| AAGAAACATCATTCAGAGCC+TGG | - | chr1_3:60565609-60565628 | Msa0130390:intron | 40.0% | |
| ! | CAAATCACGGGTCTTATACT+TGG | - | chr1_3:60565807-60565826 | Msa0130390:intron | 40.0% |
| GTTGTGCTAACTGTGATCTT+AGG | - | chr1_3:60565830-60565849 | Msa0130390:intron | 40.0% | |
| TGTGATCTTAGGAAGAGCAA+TGG | - | chr1_3:60565841-60565860 | Msa0130390:intron | 40.0% | |
| CTTAGGAAGAGCAATGGTTA+AGG | - | chr1_3:60565847-60565866 | Msa0130390:intron | 40.0% | |
| ! | TTAAAAGGTGCACTTTCCCA+TGG | - | chr1_3:60565904-60565923 | Msa0130390:intron | 40.0% |
| ATGCATGCGAATATGTTGGA+AGG | - | chr1_3:60566047-60566066 | Msa0130390:intron | 40.0% | |
| TAGAAAGGGATGATTGCTTG+AGG | - | chr1_3:60566091-60566110 | Msa0130390:intron | 40.0% | |
| AGAAAGGGATGATTGCTTGA+GGG | - | chr1_3:60566092-60566111 | Msa0130390:intron | 40.0% | |
| !! | AGGCATCAAAGAGCATTATG+TGG | - | chr1_3:60566224-60566243 | Msa0130390:intron | 40.0% |
| ! | AAGACCACTGGTACTTGTTA+AGG | + | chr1_3:60566261-60566280 | None:intergenic | 40.0% |
| TGTACAATTCCATTCCAGCA+TGG | + | chr1_3:60566406-60566425 | None:intergenic | 40.0% | |
| ATTCATTGTTTGCACCTCCA+AGG | + | chr1_3:60566607-60566626 | None:intergenic | 40.0% | |
| ! | CTTCAAGTTATTGCGCATTG+AGG | - | chr1_3:60566657-60566676 | Msa0130390:intron | 40.0% |
| !! | TGTTGACTCTTGTGAATCTC+CGG | - | chr1_3:60566685-60566704 | Msa0130390:intron | 40.0% |
| TTGTGAATCTCCGGATGATT+TGG | - | chr1_3:60566694-60566713 | Msa0130390:intron | 40.0% | |
| CACATATCAAAATGAGGAGG+TGG | - | chr1_3:60568040-60568059 | Msa0130390:intron | 40.0% | |
| ! | GGGTATGGGGTTTGAAATAA+TGG | - | chr1_3:60568650-60568669 | Msa0130390:intron | 40.0% |
| TGACAAACTCTCCATATTGC+AGG | + | chr1_3:60568949-60568968 | None:intergenic | 40.0% | |
| GTCTCCCATGATATTCTGAA+TGG | - | chr1_3:60569084-60569103 | Msa0130390:intron | 40.0% | |
| GGTCCCATTCAGAATATCAT+GGG | + | chr1_3:60569091-60569110 | None:intergenic | 40.0% | |
| TGGTCCCATTCAGAATATCA+TGG | + | chr1_3:60569092-60569111 | None:intergenic | 40.0% | |
| TCTAACAGTGTCTGCAGATA+TGG | - | chr1_3:60569136-60569155 | Msa0130390:intron | 40.0% | |
| AAGAAGAGATGTGATTCCAC+TGG | + | chr1_3:60569267-60569286 | None:intergenic | 40.0% | |
| AATCCATAACCTTCCAACTC+AGG | - | chr1_3:60569304-60569323 | Msa0130390:intron | 40.0% | |
| GTTAGAAATGACATGGGATG+CGG | - | chr1_3:60569843-60569862 | Msa0130390:intron | 40.0% | |
| CAATTCCACAGTCAACAGTT+CGG | + | chr1_3:60569908-60569927 | None:intergenic | 40.0% | |
| TTGCTCAACTTTCAATGCAC+AGG | - | chr1_3:60569925-60569944 | Msa0130390:intron | 40.0% | |
| TGAAACCTTGTCATATGCTC+AGG | - | chr1_3:60570009-60570028 | Msa0130390:intron | 40.0% | |
| !!! | TTTTGGAATCAGGTATTGGC+TGG | - | chr1_3:60570190-60570209 | Msa0130390:intron | 40.0% |
| ! | ATATTGAATGGTAACGCAGG+TGG | + | chr1_3:60570275-60570294 | None:intergenic | 40.0% |
| AATTGGAAATACGAGCACCA+TGG | - | chr1_3:60570384-60570403 | Msa0130390:intron | 40.0% | |
| ! | ATAGTTGTGTTTGCTGAGGA+AGG | - | chr1_3:60570747-60570766 | Msa0130390:CDS | 40.0% |
| ! | TAGTTGTGTTTGCTGAGGAA+GGG | - | chr1_3:60570748-60570767 | Msa0130390:CDS | 40.0% |
| GTGGAACTAGAATAGGATGT+TGG | - | chr1_3:60570777-60570796 | Msa0130390:CDS | 40.0% | |
| GAACTTTCTTCCCTAGCATT+TGG | - | chr1_3:60570859-60570878 | Msa0130390:CDS | 40.0% | |
| TTTCTTCCCTAGCATTTGGT+TGG | - | chr1_3:60570863-60570882 | Msa0130390:CDS | 40.0% | |
| GCATAATCCAACCAAATGCT+AGG | + | chr1_3:60570873-60570892 | None:intergenic | 40.0% | |
| ! | GTTGATGCCATGTTTCTGAC+TGG | + | chr1_3:60562684-60562703 | None:intergenic | 45.0% |
| ! | CAGCGAAGAAATGGTGATGA+TGG | + | chr1_3:60562768-60562787 | None:intergenic | 45.0% |
| !! | CAATGGAATGAAGGTACCTG+TGG | + | chr1_3:60562931-60562950 | None:intergenic | 45.0% |
| GAAGAATGGAACCTCAAACC+AGG | - | chr1_3:60563069-60563088 | Msa0130390:intron | 45.0% | |
| TCGACTCCTACAATTTCAGG+GGG | + | chr1_3:60563250-60563269 | None:intergenic | 45.0% | |
| GGAGTCGATCATTTACGAGT+AGG | - | chr1_3:60563262-60563281 | Msa0130390:intron | 45.0% | |
| TGGGACGTCATTCAAAACCA+AGG | - | chr1_3:60563515-60563534 | Msa0130390:intron | 45.0% | |
| GACAACACCTCCAATTTCCT+GGG | - | chr1_3:60563580-60563599 | Msa0130390:intron | 45.0% | |
| ACAACACCTCCAATTTCCTG+GGG | - | chr1_3:60563581-60563600 | Msa0130390:intron | 45.0% | |
| AATTCACCCCAGGAAATTGG+AGG | + | chr1_3:60563590-60563609 | None:intergenic | 45.0% | |
| TCCAATTTCCTGGGGTGAAT+TGG | - | chr1_3:60563589-60563608 | Msa0130390:intron | 45.0% | |
| ACCAATTCACCCCAGGAAAT+TGG | + | chr1_3:60563593-60563612 | None:intergenic | 45.0% | |
| AATTTCCTGGGGTGAATTGG+TGG | - | chr1_3:60563592-60563611 | Msa0130390:intron | 45.0% | |
| !! | ATCTGCTGATGGACTTGGAA+TGG | - | chr1_3:60564016-60564035 | Msa0130390:intron | 45.0% |
| TTCGGCTTCAGTTTCAGACA+TGG | + | chr1_3:60564118-60564137 | None:intergenic | 45.0% | |
| !! | AGACTTATGGAGGTGGGTTA+TGG | - | chr1_3:60564182-60564201 | Msa0130390:intron | 45.0% |
| ! | GATAGGGATTTGAGTGTTGC+AGG | - | chr1_3:60564217-60564236 | Msa0130390:intron | 45.0% |
| CTCTTGCCATTCATCTTGAC+CGG | - | chr1_3:60564320-60564339 | Msa0130390:intron | 45.0% | |
| CTATCCTTGAGGGAAATGTC+TGG | - | chr1_3:60564951-60564970 | Msa0130390:intron | 45.0% | |
| !!! | GTTGCCCTAGCGTTGTTTTT+TGG | - | chr1_3:60564983-60565002 | Msa0130390:intron | 45.0% |
| CGAGCCAAAAAACAACGCTA+GGG | + | chr1_3:60564990-60565009 | None:intergenic | 45.0% | |
| ACGAGCCAAAAAACAACGCT+AGG | + | chr1_3:60564991-60565010 | None:intergenic | 45.0% | |
| TTTAGCACAGTGAACCAGGA+AGG | - | chr1_3:60565091-60565110 | Msa0130390:intron | 45.0% | |
| CAGTGGATGATGAGAAGCTT+TGG | + | chr1_3:60565215-60565234 | None:intergenic | 45.0% | |
| TGAATCTAGGCTGTACTACG+AGG | + | chr1_3:60565479-60565498 | None:intergenic | 45.0% | |
| ! | AGCCTGGCATGGCAATTTTA+GGG | - | chr1_3:60565625-60565644 | Msa0130390:intron | 45.0% |
| TTCCCTAAAATTGCCATGCC+AGG | + | chr1_3:60565630-60565649 | None:intergenic | 45.0% | |
| GTTACTCTGCCTGCTATAGT+TGG | - | chr1_3:60565660-60565679 | Msa0130390:intron | 45.0% | |
| GTGATCAAGACCCGAAGAAT+AGG | + | chr1_3:60565690-60565709 | None:intergenic | 45.0% | |
| CATGCGAATATGTTGGAAGG+TGG | - | chr1_3:60566050-60566069 | Msa0130390:intron | 45.0% | |
| AGTGCCTTAACAAGTACCAG+TGG | - | chr1_3:60566254-60566273 | Msa0130390:intron | 45.0% | |
| ! | AAGTACCAGTGGTCTTGACA+AGG | - | chr1_3:60566265-60566284 | Msa0130390:intron | 45.0% |
| TATTGTACAATGGGCCATGC+TGG | - | chr1_3:60566389-60566408 | Msa0130390:CDS | 45.0% | |
| TGTTCGCTAGCCAAATCATC+CGG | + | chr1_3:60566707-60566726 | None:intergenic | 45.0% | |
| GGTTGCTCTGTTTGACAATG+AGG | - | chr1_3:60566739-60566758 | Msa0130390:intron | 45.0% | |
| TGCTCTGTTTGACAATGAGG+AGG | - | chr1_3:60566742-60566761 | Msa0130390:intron | 45.0% | |
| AGCATCAGTTGTGAGAACAG+CGG | + | chr1_3:60566851-60566870 | None:intergenic | 45.0% | |
| ATAGCAATCATCGGTAGCGT+GGG | - | chr1_3:60567036-60567055 | Msa0130390:CDS | 45.0% | |
| AAACAGCAGTGGTTAGACGT+AGG | + | chr1_3:60567180-60567199 | None:intergenic | 45.0% | |
| ! | ACGTCTAACCACTGCTGTTT+AGG | - | chr1_3:60567180-60567199 | Msa0130390:intron | 45.0% |
| ! | TCTAACCACTGCTGTTTAGG+TGG | - | chr1_3:60567183-60567202 | Msa0130390:intron | 45.0% |
| ! | CTAACCACTGCTGTTTAGGT+GGG | - | chr1_3:60567184-60567203 | Msa0130390:intron | 45.0% |
| ATGTCAAAGGGGGTCAGATT+TGG | + | chr1_3:60568543-60568562 | None:intergenic | 45.0% | |
| TACAGAAATGACCCCCTTTC+TGG | - | chr1_3:60567538-60567557 | Msa0130390:intron | 45.0% | |
| ! | TTTTTCTTCGTACGGGTCGT+TGG | - | chr1_3:60567927-60567946 | Msa0130390:intron | 45.0% |
| TCAAAATGAGGAGGTGGATG+AGG | + | chr1_3:60568046-60568065 | None:intergenic | 45.0% | |
| TCAAAATGAGGAGGTGGATG+AGG | - | chr1_3:60568046-60568065 | Msa0130390:intron | 45.0% | |
| ! | TTTTTCTTCGTACGGGTCGT+TGG | + | chr1_3:60567927-60567946 | None:intergenic | 45.0% |
| TACAGAAATGACCCCCTTTC+TGG | + | chr1_3:60567538-60567557 | None:intergenic | 45.0% | |
| ATGTCAAAGGGGGTCAGATT+TGG | - | chr1_3:60568543-60568562 | Msa0130390:CDS | 45.0% | |
| TACTGAACAAATGGTTGCCG+TGG | + | chr1_3:60568711-60568730 | None:intergenic | 45.0% | |
| ACAAGTCCTTTCTGCAACTC+TGG | + | chr1_3:60569212-60569231 | None:intergenic | 45.0% | |
| ! | TTGCCTGAGTTGGAAGGTTA+TGG | + | chr1_3:60569310-60569329 | None:intergenic | 45.0% |
| TAGAGAGGAATTGCCTGAGT+TGG | + | chr1_3:60569320-60569339 | None:intergenic | 45.0% | |
| CTACTCTCTGTAGGAATTCG+TGG | - | chr1_3:60569821-60569840 | Msa0130390:intron | 45.0% | |
| !! | AGAAGCGAGTATTGGACCTA+TGG | + | chr1_3:60569874-60569893 | None:intergenic | 45.0% |
| ATAGGTCCAATACTCGCTTC+TGG | - | chr1_3:60569873-60569892 | Msa0130390:intron | 45.0% | |
| TAGGTCCAATACTCGCTTCT+GGG | - | chr1_3:60569874-60569893 | Msa0130390:intron | 45.0% | |
| TCAAGCCTGAGCATATGACA+AGG | + | chr1_3:60570017-60570036 | None:intergenic | 45.0% | |
| GCTCAGGCTTGATACCAAAA+AGG | - | chr1_3:60570025-60570044 | Msa0130390:intron | 45.0% | |
| TTGTAACCATGTCTGGCTGT+TGG | - | chr1_3:60570054-60570073 | Msa0130390:intron | 45.0% | |
| TGGTGTAGGTCAGAGATGAA+TGG | + | chr1_3:60570543-60570562 | None:intergenic | 45.0% | |
| TTCATCTCTGACCTACACCA+AGG | - | chr1_3:60570543-60570562 | Msa0130390:CDS | 45.0% | |
| ! | CATAGACAAGATGCTGACTG+TGG | - | chr1_3:60570687-60570706 | Msa0130390:intron | 45.0% |
| ! | TGTGTTGCTGAACATGTGCA+TGG | - | chr1_3:60570720-60570739 | Msa0130390:intron | 45.0% |
| ! | AGTTGTGTTTGCTGAGGAAG+GGG | - | chr1_3:60570749-60570768 | Msa0130390:CDS | 45.0% |
| GGTGCTAGTGGAACTAGAAT+AGG | - | chr1_3:60570770-60570789 | Msa0130390:CDS | 45.0% | |
| !! | AATTATTAATGAAAAATATA+AGG | - | chr1_3:60564734-60564753 | Msa0130390:intron | 5.0% |
| !! | ATTATTAATGAAAAATATAA+GGG | - | chr1_3:60564735-60564754 | Msa0130390:intron | 5.0% |
| !!! | ATATGTTTTAAAAAAATTAT+TGG | + | chr1_3:60565392-60565411 | None:intergenic | 5.0% |
| AACCCACCCAGTCAGAAACA+TGG | - | chr1_3:60562674-60562693 | Msa0130390:three_prime_UTR | 50.0% | |
| ! | TGCCATGTTTCTGACTGGGT+GGG | + | chr1_3:60562679-60562698 | None:intergenic | 50.0% |
| ! | ATGCCATGTTTCTGACTGGG+TGG | + | chr1_3:60562680-60562699 | None:intergenic | 50.0% |
| AGATTGCGGCAGCGAAGAAA+TGG | + | chr1_3:60562777-60562796 | None:intergenic | 50.0% | |
| GAATGGAACCTCAAACCAGG+TGG | - | chr1_3:60563072-60563091 | Msa0130390:intron | 50.0% | |
| ! | AGTAACGTCCACCTGGTTTG+AGG | + | chr1_3:60563083-60563102 | None:intergenic | 50.0% |
| GTGAAGAAGTAACGTCCACC+TGG | + | chr1_3:60563090-60563109 | None:intergenic | 50.0% | |
| ! | TGTTTGGTTGCTTTCGCCGT+TGG | - | chr1_3:60563123-60563142 | Msa0130390:intron | 50.0% |
| CGACTCCTACAATTTCAGGG+GGG | + | chr1_3:60563249-60563268 | None:intergenic | 50.0% | |
| CGACAACACCTCCAATTTCC+TGG | - | chr1_3:60563579-60563598 | Msa0130390:intron | 50.0% | |
| GTAATCCACCAATTCACCCC+AGG | + | chr1_3:60563600-60563619 | None:intergenic | 50.0% | |
| !! | GCCTTCACTGACGCTGTTTT+CGG | + | chr1_3:60564136-60564155 | None:intergenic | 50.0% |
| !! | GAGGTGGGTTATGGCATACT+TGG | - | chr1_3:60564191-60564210 | Msa0130390:intron | 50.0% |
| ACATCATTCAGAGCCTGGCA+TGG | - | chr1_3:60565614-60565633 | Msa0130390:intron | 50.0% | |
| ! | GAGCCTGGCATGGCAATTTT+AGG | - | chr1_3:60565624-60565643 | Msa0130390:intron | 50.0% |
| TACAATGGGCCATGCTGGAA+TGG | - | chr1_3:60566394-60566413 | Msa0130390:CDS | 50.0% | |
| GATACTCAACCTAGCTGCCT+TGG | - | chr1_3:60566587-60566606 | Msa0130390:intron | 50.0% | |
| TGGCTAGCGAACAAGCGATT+CGG | - | chr1_3:60566714-60566733 | Msa0130390:intron | 50.0% | |
| ! | TAGCGAACAAGCGATTCGGA+TGG | - | chr1_3:60566718-60566737 | Msa0130390:intron | 50.0% |
| GCATCAGTTGTGAGAACAGC+GGG | + | chr1_3:60566850-60566869 | None:intergenic | 50.0% | |
| CATAGCAATCATCGGTAGCG+TGG | - | chr1_3:60567035-60567054 | Msa0130390:CDS | 50.0% | |
| TGAACCCACCTAAACAGCAG+TGG | + | chr1_3:60567191-60567210 | None:intergenic | 50.0% | |
| GTGGGTTCAGATTCTGCTCA+AGG | - | chr1_3:60567202-60567221 | Msa0130390:intron | 50.0% | |
| TCAGATTCTGCTCAAGGAGC+TGG | - | chr1_3:60567208-60567227 | Msa0130390:intron | 50.0% | |
| CTCATGGCCTGAAACATGGT+GGG | + | chr1_3:60567238-60567257 | None:intergenic | 50.0% | |
| TCTCATGGCCTGAAACATGG+TGG | + | chr1_3:60567239-60567258 | None:intergenic | 50.0% | |
| ACGTCTCATGGCCTGAAACA+TGG | + | chr1_3:60567242-60567261 | None:intergenic | 50.0% | |
| GCTCGCAACTATACGTCTCA+TGG | + | chr1_3:60567254-60567273 | None:intergenic | 50.0% | |
| GAGACGTATAGTTGCGAGCT+TGG | - | chr1_3:60567255-60567274 | Msa0130390:intron | 50.0% | |
| GTTGGCGTAAATGGTTACCG+CGG | + | chr1_3:60568186-60568205 | None:intergenic | 50.0% | |
| CTCTTGCTCTTCCTCTTCCT+CGG | - | chr1_3:60567955-60567974 | Msa0130390:intron | 50.0% | |
| TCTTGCTCTTCCTCTTCCTC+GGG | - | chr1_3:60567956-60567975 | Msa0130390:intron | 50.0% | |
| TGAGGAAGAGGAAGAGGAAG+AGG | - | chr1_3:60568064-60568083 | Msa0130390:intron | 50.0% | |
| TCTTGCTCTTCCTCTTCCTC+GGG | + | chr1_3:60567956-60567975 | None:intergenic | 50.0% | |
| CTCTTGCTCTTCCTCTTCCT+CGG | + | chr1_3:60567955-60567974 | None:intergenic | 50.0% | |
| GTTGGCGTAAATGGTTACCG+CGG | - | chr1_3:60568186-60568205 | Msa0130390:intron | 50.0% | |
| ! | GTCTCAAGCTGTTTCAGCCA+CGG | - | chr1_3:60568691-60568710 | Msa0130390:intron | 50.0% |
| GTCCTTTCTGCAACTCTGGT+CGG | + | chr1_3:60569208-60569227 | None:intergenic | 50.0% | |
| ! | GAGGAATTGCCTGAGTTGGA+AGG | + | chr1_3:60569316-60569335 | None:intergenic | 50.0% |
| ATGGGATGCGGATCAACCAT+AGG | - | chr1_3:60569855-60569874 | Msa0130390:intron | 50.0% | |
| AGGTCCAATACTCGCTTCTG+GGG | - | chr1_3:60569875-60569894 | Msa0130390:intron | 50.0% | |
| CAAGAACCAACAGCCAGACA+TGG | + | chr1_3:60570063-60570082 | None:intergenic | 50.0% | |
| AACGCAGGTGGAGGTTTCAA+CGG | + | chr1_3:60570263-60570282 | None:intergenic | 50.0% | |
| ! | TTGAATGGTAACGCAGGTGG+AGG | + | chr1_3:60570272-60570291 | None:intergenic | 50.0% |
| ! | ACGTGGTTTGGCCAAGAGTA+AGG | + | chr1_3:60570304-60570323 | None:intergenic | 50.0% |
| TTACTCTTGGCCAAACCACG+TGG | - | chr1_3:60570303-60570322 | Msa0130390:intron | 50.0% | |
| TACTCTTGGCCAAACCACGT+GGG | - | chr1_3:60570304-60570323 | Msa0130390:intron | 50.0% | |
| AATTCAACCTAGTGCCCACG+TGG | + | chr1_3:60570321-60570340 | None:intergenic | 50.0% | |
| CCATGGAAATACATGCCGCT+CGG | - | chr1_3:60570401-60570420 | Msa0130390:intron | 50.0% | |
| TGCTCTCGGAGCAAATAGAG+AGG | + | chr1_3:60570929-60570948 | None:intergenic | 50.0% | |
| TGGACTCATTTCCACGCCAC+AGG | - | chr1_3:60562912-60562931 | Msa0130390:three_prime_UTR | 55.0% | |
| !! | GAATGAAGGTACCTGTGGCG+TGG | + | chr1_3:60562926-60562945 | None:intergenic | 55.0% |
| CAGCTGCACACGAAGCGAAA+AGG | + | chr1_3:60562999-60563018 | None:intergenic | 55.0% | |
| GCCGAAAACAGCGTCAGTGA+AGG | - | chr1_3:60564132-60564151 | Msa0130390:intron | 55.0% | |
| GGGATGATTGCTTGAGGGCA+AGG | - | chr1_3:60566097-60566116 | Msa0130390:intron | 55.0% | |
| ! | TTGGGCCTTGTCAAGACCAC+TGG | + | chr1_3:60566273-60566292 | None:intergenic | 55.0% |
| ACTCAACCTAGCTGCCTTGG+AGG | - | chr1_3:60566590-60566609 | Msa0130390:intron | 55.0% | |
| TTTGCACCTCCAAGGCAGCT+AGG | + | chr1_3:60566599-60566618 | None:intergenic | 55.0% | |
| TGGTGCACCCACCATGTTTC+AGG | - | chr1_3:60567228-60567247 | Msa0130390:intron | 55.0% | |
| GGTGGATGAGGAAGAGGAAG+AGG | + | chr1_3:60568058-60568077 | None:intergenic | 55.0% | |
| TGAGGAGGTGGATGAGGAAG+AGG | + | chr1_3:60568052-60568071 | None:intergenic | 55.0% | |
| TGAGGAGGTGGATGAGGAAG+AGG | - | chr1_3:60568052-60568071 | Msa0130390:intron | 55.0% | |
| GGTGGATGAGGAAGAGGAAG+AGG | - | chr1_3:60568058-60568077 | Msa0130390:intron | 55.0% | |
| ATCAGTCAACCTGCCTCACC+TGG | - | chr1_3:60568420-60568439 | Msa0130390:intron | 55.0% | |
| GTGTCTGCAGATATGGCCCA+TGG | - | chr1_3:60569143-60569162 | Msa0130390:intron | 55.0% | |
| CTTTCTGCAACTCTGGTCGG+TGG | + | chr1_3:60569205-60569224 | None:intergenic | 55.0% | |
| CACCGACCAGAGTTGCAGAA+AGG | - | chr1_3:60569203-60569222 | Msa0130390:intron | 55.0% | |
| AACCAGCGCTATGCTACCAG+TGG | - | chr1_3:60569248-60569267 | Msa0130390:intron | 55.0% | |
| TTCCACTGGTAGCATAGCGC+TGG | + | chr1_3:60569253-60569272 | None:intergenic | 55.0% | |
| CCAACCCCAGAAGCGAGTAT+TGG | + | chr1_3:60569882-60569901 | None:intergenic | 55.0% | |
| !! | CCAATACTCGCTTCTGGGGT+TGG | - | chr1_3:60569879-60569898 | Msa0130390:intron | 55.0% |
| ! | GGCATCCGAACTGTTGACTG+TGG | - | chr1_3:60569900-60569919 | Msa0130390:intron | 55.0% |
| AACCTAGTGCCCACGTGGTT+TGG | + | chr1_3:60570316-60570335 | None:intergenic | 55.0% | |
| CCGAGCGGCATGTATTTCCA+TGG | + | chr1_3:60570404-60570423 | None:intergenic | 55.0% | |
| AGAGGAAGAGCCCGAGGAAG+AGG | + | chr1_3:60568082-60568101 | None:intergenic | 60.0% | |
| AGAGGAAGAGGAAGAGCCCG+AGG | + | chr1_3:60568076-60568095 | None:intergenic | 60.0% | |
| AGAGGAAGAGGAAGAGCCCG+AGG | - | chr1_3:60568076-60568095 | Msa0130390:intron | 60.0% | |
| AGAGGAAGAGCCCGAGGAAG+AGG | - | chr1_3:60568082-60568101 | Msa0130390:intron | 60.0% | |
| !! | TGCTGAGGAAGGGGTGCTAG+TGG | - | chr1_3:60570758-60570777 | Msa0130390:CDS | 60.0% |
| GTGCCAGGCTTGCACAGGTG+AGG | - | chr1_3:60567637-60567656 | Msa0130390:intron | 65.0% | |
| CTGCCTCACCTGTGCAAGCC+TGG | + | chr1_3:60567643-60567662 | None:intergenic | 65.0% | |
| CAGGCTTGCACAGGTGAGGC+AGG | - | chr1_3:60567641-60567660 | Msa0130390:intron | 65.0% | |
| TTTCTGACGCGCGCCAGGTG+AGG | + | chr1_3:60568436-60568455 | None:intergenic | 65.0% | |
| TCACCTGGCGCGCGTCAGAA+AGG | - | chr1_3:60568435-60568454 | Msa0130390:CDS | 65.0% | |
| GGCCAAACCACGTGGGCACT+AGG | - | chr1_3:60570311-60570330 | Msa0130390:intron | 65.0% | |
| CCTGGCGCGCGTCAGAAAGG+CGG | - | chr1_3:60568438-60568457 | Msa0130390:CDS | 70.0% | |
| TGACGCGCGCCAGGTGAGGC+AGG | + | chr1_3:60568432-60568451 | None:intergenic | 75.0% | |
| CCGCCTTTCTGACGCGCGCC+AGG | + | chr1_3:60568441-60568460 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 60562637 | 60571029 | 60562637 | ID=Msa0130390;Name=Msa0130390 |
| chr1_3 | mRNA | 60562637 | 60571029 | 60562637 | ID=Msa0130390-mRNA-1;Parent=Msa0130390;Name=Msa0130390-mRNA-1;_AED=0.13;_eAED=0.13;_QI=56|1|1|1|0.87|0.88|9|312|525 |
| chr1_3 | exon | 60562637 | 60563057 | 60562637 | ID=Msa0130390-mRNA-1:exon:19970;Parent=Msa0130390-mRNA-1 |
| chr1_3 | exon | 60563720 | 60563832 | 60563720 | ID=Msa0130390-mRNA-1:exon:19969;Parent=Msa0130390-mRNA-1 |
| chr1_3 | exon | 60564341 | 60564522 | 60564341 | ID=Msa0130390-mRNA-1:exon:19968;Parent=Msa0130390-mRNA-1 |
| chr1_3 | exon | 60566332 | 60566464 | 60566332 | ID=Msa0130390-mRNA-1:exon:19967;Parent=Msa0130390-mRNA-1 |
| chr1_3 | exon | 60566903 | 60567142 | 60566903 | ID=Msa0130390-mRNA-1:exon:19966;Parent=Msa0130390-mRNA-1 |
| chr1_3 | exon | 60568423 | 60568570 | 60568423 | ID=Msa0130390-mRNA-1:exon:19965;Parent=Msa0130390-mRNA-1 |
| chr1_3 | exon | 60569325 | 60569600 | 60569325 | ID=Msa0130390-mRNA-1:exon:19964;Parent=Msa0130390-mRNA-1 |
| chr1_3 | exon | 60570515 | 60570650 | 60570515 | ID=Msa0130390-mRNA-1:exon:19963;Parent=Msa0130390-mRNA-1 |
| chr1_3 | exon | 60570733 | 60571029 | 60570733 | ID=Msa0130390-mRNA-1:exon:19962;Parent=Msa0130390-mRNA-1 |
| chr1_3 | five_prime_UTR | 60570974 | 60571029 | 60570974 | ID=Msa0130390-mRNA-1:five_prime_utr;Parent=Msa0130390-mRNA-1 |
| chr1_3 | CDS | 60570733 | 60570973 | 60570733 | ID=Msa0130390-mRNA-1:cds;Parent=Msa0130390-mRNA-1 |
| chr1_3 | CDS | 60570515 | 60570650 | 60570515 | ID=Msa0130390-mRNA-1:cds;Parent=Msa0130390-mRNA-1 |
| chr1_3 | CDS | 60569325 | 60569600 | 60569325 | ID=Msa0130390-mRNA-1:cds;Parent=Msa0130390-mRNA-1 |
| chr1_3 | CDS | 60568423 | 60568570 | 60568423 | ID=Msa0130390-mRNA-1:cds;Parent=Msa0130390-mRNA-1 |
| chr1_3 | CDS | 60566903 | 60567142 | 60566903 | ID=Msa0130390-mRNA-1:cds;Parent=Msa0130390-mRNA-1 |
| chr1_3 | CDS | 60566332 | 60566464 | 60566332 | ID=Msa0130390-mRNA-1:cds;Parent=Msa0130390-mRNA-1 |
| chr1_3 | CDS | 60564341 | 60564522 | 60564341 | ID=Msa0130390-mRNA-1:cds;Parent=Msa0130390-mRNA-1 |
| chr1_3 | CDS | 60563720 | 60563832 | 60563720 | ID=Msa0130390-mRNA-1:cds;Parent=Msa0130390-mRNA-1 |
| chr1_3 | CDS | 60562949 | 60563057 | 60562949 | ID=Msa0130390-mRNA-1:cds;Parent=Msa0130390-mRNA-1 |
| chr1_3 | three_prime_UTR | 60562637 | 60562948 | 60562637 | ID=Msa0130390-mRNA-1:three_prime_utr;Parent=Msa0130390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
