AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1284390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1284390 MtrunA17_Chr8g0357051 93.657 268 11 2 1 262 1 268 4.63e-180 495
Msa1284390 MtrunA17_Chr2g0310191 70.522 268 72 4 1 262 1 267 3.36e-130 369
Msa1284390 MtrunA17_Chr8g0348061 57.143 154 63 2 72 223 92 244 4.24e-65 203
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1284390 AT1G16320.1 66.953 233 71 2 31 262 46 273 3.84e-117 337
Msa1284390 AT1G79510.2 60.714 280 87 5 1 262 1 275 1.34e-116 335
Msa1284390 AT1G79510.1 60.714 280 87 5 1 262 1 275 1.34e-116 335
Msa1284390 AT2G46220.1 57.325 157 64 2 69 223 81 236 3.18e-66 206

Find 69 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACCTGTGCAGTGAAATTT+TGG 0.216514 8_3:+26686119 None:intergenic
GATGAAACCGGTTTCGGTTT+TGG 0.220818 8_3:-26685223 Msa1284390:CDS
GTGTCTTTGTCTTATAAGTA+TGG 0.225287 8_3:-26684721 Msa1284390:three_prime_UTR
GACCCTTTGAACACATTTAC+TGG 0.240823 8_3:-26685507 Msa1284390:CDS
AAAAGTACAAGTTGATCTTT+TGG 0.252305 8_3:-26685479 Msa1284390:CDS
AGGTACTTCTCGGTATAAAT+TGG 0.261999 8_3:-26685310 Msa1284390:CDS
ACCTTAATTATGATATTTAT+AGG 0.278702 8_3:-26685970 Msa1284390:intron
CAACACTGGTCCAAGAAAAT+TGG 0.287132 8_3:+26684639 None:intergenic
ACCTATAAATATCATAATTA+AGG 0.297853 8_3:+26685969 None:intergenic
GAATAAAGAGCATTGAGAAA+TGG 0.317766 8_3:+26686162 None:intergenic
TGAAAACAATCTAATAATAT+TGG 0.331603 8_3:-26684665 Msa1284390:three_prime_UTR
AATAAAGAGCATTGAGAAAT+GGG 0.334057 8_3:+26686163 None:intergenic
TGGATTCTAGTTCATGTTCA+TGG 0.337564 8_3:-26685146 Msa1284390:CDS
CCCCATGAAAATGTCGGATT+TGG 0.343893 8_3:+26685174 None:intergenic
TGTATAGTATAGATTATAAT+AGG 0.348269 8_3:-26685001 Msa1284390:three_prime_UTR
GTTTGGATGTATACAGAATA+TGG 0.351747 8_3:-26685416 Msa1284390:CDS
AGACAAGAGTGTATATAGAT+AGG 0.353666 8_3:-26684926 Msa1284390:three_prime_UTR
TAGGTTAGATGTAATGAATT+TGG 0.354753 8_3:-26684982 Msa1284390:three_prime_UTR
TTGGTGTTTGAATCTTGATT+TGG 0.370847 8_3:+26686204 None:intergenic
AGAGAATGTAAGAAAATTTG+AGG 0.394012 8_3:+26686336 None:intergenic
TGTTTATCTTGAGTAGCTAA+TGG 0.394872 8_3:+26686082 None:intergenic
GAAGATGATGAAACCGGTTT+CGG 0.396965 8_3:-26685229 Msa1284390:CDS
GTTGTTACCACCAGATGGTT+TGG 0.412534 8_3:-26685076 Msa1284390:CDS
GTGAATTTCAAGGTACTTCT+CGG 0.412707 8_3:-26685320 Msa1284390:CDS
GGAACTTGAGGGGTGTGCCT+AGG 0.417152 8_3:-26685362 Msa1284390:CDS
TTTGTTTCGTGAGATTGGTT+TGG 0.421815 8_3:-26685433 Msa1284390:CDS
AATGTCGGATTTGGACTTGC+AGG 0.426405 8_3:+26685183 None:intergenic
GAACTTGAGGGGTGTGCCTA+GGG 0.426698 8_3:-26685361 Msa1284390:CDS
ATTAACCATTCAAAATTCAA+TGG 0.438748 8_3:-26686269 Msa1284390:exon
ACCAAATCCAAAACCGAAAC+CGG 0.442141 8_3:+26685216 None:intergenic
TTTCACTGCACAGGTTGCTC+AGG 0.452221 8_3:-26686113 Msa1284390:CDS
GGGGTGTGCCTAGGGTTCCA+TGG 0.454206 8_3:-26685353 Msa1284390:CDS
GACAAGAGTGTATATAGATA+GGG 0.462156 8_3:-26684925 Msa1284390:three_prime_UTR
GGGTGTGCCTAGGGTTCCAT+GGG 0.462556 8_3:-26685352 Msa1284390:CDS
TTGAATCTTGATTTGGATTG+AGG 0.469278 8_3:+26686211 None:intergenic
CAGAGAATGTGATATTGATC+AGG 0.478427 8_3:-26685386 Msa1284390:CDS
TACCAGTAAATGTGTTCAAA+GGG 0.481927 8_3:+26685505 None:intergenic
AGTCCAAAATTTCACTGCAC+AGG 0.486264 8_3:-26686122 Msa1284390:CDS
TCCACAGAAGATGATGAAAC+CGG 0.487224 8_3:-26685235 Msa1284390:CDS
GAACATGTAGCCAAACCATC+TGG 0.493057 8_3:+26685066 None:intergenic
ATACCAGTAAATGTGTTCAA+AGG 0.496720 8_3:+26685504 None:intergenic
GAAGCTAAAGGTGAATTTCA+AGG 0.517611 8_3:-26685330 Msa1284390:CDS
ATCAATATCACATTCTCTGA+AGG 0.533171 8_3:+26685390 None:intergenic
AATTCACCTTTAGCTTCCCA+TGG 0.534577 8_3:+26685336 None:intergenic
TTAGCTTCCCATGGAACCCT+AGG 0.536034 8_3:+26685345 None:intergenic
TATTGATCAGGTGGAACTTG+AGG 0.540071 8_3:-26685374 Msa1284390:CDS
ATTGATCAGGTGGAACTTGA+GGG 0.551874 8_3:-26685373 Msa1284390:CDS
ACCGGTTTCATCATCTTCTG+TGG 0.561359 8_3:+26685234 None:intergenic
AGGGTTCCATGGGAAGCTAA+AGG 0.578430 8_3:-26685342 Msa1284390:CDS
GAAAGATTGAGATTGCAAAG+AGG 0.578460 8_3:+26686241 None:intergenic
ATGTCGGATTTGGACTTGCA+GGG 0.580683 8_3:+26685184 None:intergenic
AGGTCTTTAACAAAGATCAA+AGG 0.587544 8_3:+26685989 None:intergenic
AGACAGTTGTTACCACCAGA+TGG 0.589181 8_3:-26685081 Msa1284390:CDS
TATTTGCATCTGACCAACAC+TGG 0.598955 8_3:+26684625 None:intergenic
ATATGCTATACAGATAGAGA+TGG 0.599230 8_3:-26684870 Msa1284390:three_prime_UTR
TAAACAGAATCAGCATCAGA+AGG 0.609028 8_3:-26686065 Msa1284390:CDS
AGAATGTGATATTGATCAGG+TGG 0.610163 8_3:-26685383 Msa1284390:CDS
CTTCTCGGTATAAATTGGAT+CGG 0.610878 8_3:-26685305 Msa1284390:CDS
AAAGGACCCCATGAAAATGT+CGG 0.612000 8_3:+26685168 None:intergenic
TCAAGCAGTTAAGCACACAT+TGG 0.624208 8_3:-26685112 Msa1284390:CDS
CGGTATAAATTGGATCGGAA+CGG 0.634092 8_3:-26685300 Msa1284390:CDS
AGAGTGTATATAGATAGGGA+TGG 0.635655 8_3:-26684921 Msa1284390:three_prime_UTR
GAACATGAACTAGAATCCAA+AGG 0.647700 8_3:+26685150 None:intergenic
TGCTGTTAGAACCCTTCGTG+AGG 0.651000 8_3:-26686017 Msa1284390:CDS
TTGATCAGGTGGAACTTGAG+GGG 0.654298 8_3:-26685372 Msa1284390:CDS
CAAAGGCATATCCTCACGAA+GGG 0.657035 8_3:+26686006 None:intergenic
TCAAAGGCATATCCTCACGA+AGG 0.664210 8_3:+26686005 None:intergenic
CATGTAGCCAAACCATCTGG+TGG 0.698747 8_3:+26685069 None:intergenic
TGTTGTTTAAGCATGATGAG+TGG 0.743271 8_3:+26686360 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACCTTAATTATGATATTTAT+AGG - chr8_3:26684989-26685008 Msa1284390:three_prime_UTR 15.0%
!! ACCTATAAATATCATAATTA+AGG + chr8_3:26684993-26685012 None:intergenic 15.0%
!!! AAAAATTGAGTTTTTAATGT+TGG - chr8_3:26685100-26685119 Msa1284390:CDS 15.0%
!!! AAAATTGAGTTTTTAATGTT+GGG - chr8_3:26685101-26685120 Msa1284390:CDS 15.0%
!! GATGATGTAATTAATATTTA+TGG - chr8_3:26685139-26685158 Msa1284390:CDS 15.0%
!!! TAAAAAAAGTTAATTTTGAG+TGG - chr8_3:26685341-26685360 Msa1284390:CDS 15.0%
!! TGTATAGTATAGATTATAAT+AGG - chr8_3:26685958-26685977 Msa1284390:intron 15.0%
!! TGAAAACAATCTAATAATAT+TGG - chr8_3:26686294-26686313 Msa1284390:five_prime_UTR 15.0%
!! ACCTTAATTATGATATTTAT+AGG - chr8_3:26684989-26685008 Msa1284390:three_prime_UTR 15.0%
!! ACCTATAAATATCATAATTA+AGG + chr8_3:26684993-26685012 None:intergenic 15.0%
!!! AAAAATTGAGTTTTTAATGT+TGG - chr8_3:26685100-26685119 Msa1284390:CDS 15.0%
!!! AAAATTGAGTTTTTAATGTT+GGG - chr8_3:26685101-26685120 Msa1284390:CDS 15.0%
!! GATGATGTAATTAATATTTA+TGG - chr8_3:26685139-26685158 Msa1284390:CDS 15.0%
!!! TAAAAAAAGTTAATTTTGAG+TGG - chr8_3:26685341-26685360 Msa1284390:CDS 15.0%
!! TGTATAGTATAGATTATAAT+AGG - chr8_3:26685958-26685977 Msa1284390:intron 15.0%
!! TGAAAACAATCTAATAATAT+TGG - chr8_3:26686294-26686313 Msa1284390:five_prime_UTR 15.0%
!! ATTAACCATTCAAAATTCAA+TGG - chr8_3:26684690-26684709 Msa1284390:three_prime_UTR 20.0%
!!! TTGCTTTTGATGTAAATATA+TGG - chr8_3:26685042-26685061 Msa1284390:three_prime_UTR 20.0%
!!! ATTTGAATTGTGTTATTTCT+AGG - chr8_3:26685071-26685090 Msa1284390:CDS 20.0%
!! TTAATTCTGATTAATCTGTA+AGG - chr8_3:26685203-26685222 Msa1284390:CDS 20.0%
!!! AATTTTGAGTGGAAAAAAAT+TGG - chr8_3:26685352-26685371 Msa1284390:CDS 20.0%
!!! ATTTTGAGTGGAAAAAAATT+GGG - chr8_3:26685353-26685372 Msa1284390:CDS 20.0%
!!! TTGAGTTTGATAATTTTTCA+GGG - chr8_3:26685412-26685431 Msa1284390:CDS 20.0%
!!! ATGTGTTTTATACATATATG+AGG - chr8_3:26686130-26686149 Msa1284390:CDS 20.0%
!! ATTAACCATTCAAAATTCAA+TGG - chr8_3:26684690-26684709 Msa1284390:three_prime_UTR 20.0%
!!! TTGCTTTTGATGTAAATATA+TGG - chr8_3:26685042-26685061 Msa1284390:three_prime_UTR 20.0%
!!! ATTTGAATTGTGTTATTTCT+AGG - chr8_3:26685071-26685090 Msa1284390:CDS 20.0%
!! TTAATTCTGATTAATCTGTA+AGG - chr8_3:26685203-26685222 Msa1284390:CDS 20.0%
!!! AATTTTGAGTGGAAAAAAAT+TGG - chr8_3:26685352-26685371 Msa1284390:CDS 20.0%
!!! ATTTTGAGTGGAAAAAAATT+GGG - chr8_3:26685353-26685372 Msa1284390:CDS 20.0%
!!! TTGAGTTTGATAATTTTTCA+GGG - chr8_3:26685412-26685431 Msa1284390:CDS 20.0%
!!! ATGTGTTTTATACATATATG+AGG - chr8_3:26686130-26686149 Msa1284390:CDS 20.0%
! AGAGAATGTAAGAAAATTTG+AGG + chr8_3:26684626-26684645 None:intergenic 25.0%
!! ATTTTGAATGGTTAATGCAA+TGG + chr8_3:26684686-26684705 None:intergenic 25.0%
!! AAAAGCCATTGAATTTTGAA+TGG + chr8_3:26684698-26684717 None:intergenic 25.0%
!!! AATAAAGAGCATTGAGAAAT+GGG + chr8_3:26684799-26684818 None:intergenic 25.0%
!! TTATAGGTAATTTTCTCATC+TGG - chr8_3:26685005-26685024 Msa1284390:three_prime_UTR 25.0%
!! TATAGGTAATTTTCTCATCT+GGG - chr8_3:26685006-26685025 Msa1284390:three_prime_UTR 25.0%
! ATTAATATTTATGGACCCTT+TGG - chr8_3:26685148-26685167 Msa1284390:CDS 25.0%
!!! CTTTTTTTATCCATACAAAG+TGG + chr8_3:26685330-26685349 None:intergenic 25.0%
!!! TTATTTTGTGCAAAAAGAGT+TGG - chr8_3:26685379-26685398 Msa1284390:CDS 25.0%
!!! GTTGAGTTTGATAATTTTTC+AGG - chr8_3:26685411-26685430 Msa1284390:CDS 25.0%
!!! AAAAGTACAAGTTGATCTTT+TGG - chr8_3:26685480-26685499 Msa1284390:CDS 25.0%
!!! AAAGTACAAGTTGATCTTTT+GGG - chr8_3:26685481-26685500 Msa1284390:CDS 25.0%
!!! ACTTAGTGAACTGTTTTTTT+CGG - chr8_3:26685928-26685947 Msa1284390:intron 25.0%
! TAGGTTAGATGTAATGAATT+TGG - chr8_3:26685977-26685996 Msa1284390:CDS 25.0%
!!! TGACATGTTTTTTTTTTCAC+TGG - chr8_3:26686363-26686382 Msa1284390:five_prime_UTR 25.0%
! AGAGAATGTAAGAAAATTTG+AGG + chr8_3:26684626-26684645 None:intergenic 25.0%
!! ATTTTGAATGGTTAATGCAA+TGG + chr8_3:26684686-26684705 None:intergenic 25.0%
!! AAAAGCCATTGAATTTTGAA+TGG + chr8_3:26684698-26684717 None:intergenic 25.0%
!!! AATAAAGAGCATTGAGAAAT+GGG + chr8_3:26684799-26684818 None:intergenic 25.0%
!! TTATAGGTAATTTTCTCATC+TGG - chr8_3:26685005-26685024 Msa1284390:three_prime_UTR 25.0%
!! TATAGGTAATTTTCTCATCT+GGG - chr8_3:26685006-26685025 Msa1284390:three_prime_UTR 25.0%
! ATTAATATTTATGGACCCTT+TGG - chr8_3:26685148-26685167 Msa1284390:CDS 25.0%
!!! CTTTTTTTATCCATACAAAG+TGG + chr8_3:26685330-26685349 None:intergenic 25.0%
!!! TTATTTTGTGCAAAAAGAGT+TGG - chr8_3:26685379-26685398 Msa1284390:CDS 25.0%
!!! GTTGAGTTTGATAATTTTTC+AGG - chr8_3:26685411-26685430 Msa1284390:CDS 25.0%
!!! AAAAGTACAAGTTGATCTTT+TGG - chr8_3:26685480-26685499 Msa1284390:CDS 25.0%
!!! AAAGTACAAGTTGATCTTTT+GGG - chr8_3:26685481-26685500 Msa1284390:CDS 25.0%
!!! ACTTAGTGAACTGTTTTTTT+CGG - chr8_3:26685928-26685947 Msa1284390:intron 25.0%
! TAGGTTAGATGTAATGAATT+TGG - chr8_3:26685977-26685996 Msa1284390:CDS 25.0%
!!! TGACATGTTTTTTTTTTCAC+TGG - chr8_3:26686363-26686382 Msa1284390:five_prime_UTR 25.0%
!! TTGAATCTTGATTTGGATTG+AGG + chr8_3:26684751-26684770 None:intergenic 30.0%
! TTGGTGTTTGAATCTTGATT+TGG + chr8_3:26684758-26684777 None:intergenic 30.0%
!!! GTTTTGAAGAAGAAAGTGTT+TGG + chr8_3:26684777-26684796 None:intergenic 30.0%
!! GAATAAAGAGCATTGAGAAA+TGG + chr8_3:26684800-26684819 None:intergenic 30.0%
TGTTTATCTTGAGTAGCTAA+TGG + chr8_3:26684880-26684899 None:intergenic 30.0%
!! GATGAGTTTTATCTCAATCT+TGG - chr8_3:26684916-26684935 Msa1284390:three_prime_UTR 30.0%
AGGTCTTTAACAAAGATCAA+AGG + chr8_3:26684973-26684992 None:intergenic 30.0%
! TGAGTTTTTAATGTTGGGTT+TGG - chr8_3:26685106-26685125 Msa1284390:CDS 30.0%
!! TGTTGGGTTTGGTAATTTTA+AGG - chr8_3:26685117-26685136 Msa1284390:CDS 30.0%
ACCATATATTCACATCCAAA+GGG + chr8_3:26685166-26685185 None:intergenic 30.0%
AACCATATATTCACATCCAA+AGG + chr8_3:26685167-26685186 None:intergenic 30.0%
TACCAGTAAATGTGTTCAAA+GGG + chr8_3:26685457-26685476 None:intergenic 30.0%
ATACCAGTAAATGTGTTCAA+AGG + chr8_3:26685458-26685477 None:intergenic 30.0%
!! AGAATTTTGTTTCGTGAGAT+TGG - chr8_3:26685521-26685540 Msa1284390:CDS 30.0%
GTTTGGATGTATACAGAATA+TGG - chr8_3:26685543-26685562 Msa1284390:intron 30.0%
ATCAATATCACATTCTCTGA+AGG + chr8_3:26685572-26685591 None:intergenic 30.0%
GAAAAAAACAGTTCACTAAG+TGG + chr8_3:26685929-26685948 None:intergenic 30.0%
! AGACAAGAGTGTATATAGAT+AGG - chr8_3:26686033-26686052 Msa1284390:CDS 30.0%
! GACAAGAGTGTATATAGATA+GGG - chr8_3:26686034-26686053 Msa1284390:CDS 30.0%
ATATGCTATACAGATAGAGA+TGG - chr8_3:26686089-26686108 Msa1284390:CDS 30.0%
GTGTCTTTGTCTTATAAGTA+TGG - chr8_3:26686238-26686257 Msa1284390:CDS 30.0%
!!! ATATTGGCTTCCAATTTTCT+TGG - chr8_3:26686310-26686329 Msa1284390:five_prime_UTR 30.0%
!! TTGAATCTTGATTTGGATTG+AGG + chr8_3:26684751-26684770 None:intergenic 30.0%
! TTGGTGTTTGAATCTTGATT+TGG + chr8_3:26684758-26684777 None:intergenic 30.0%
!!! GTTTTGAAGAAGAAAGTGTT+TGG + chr8_3:26684777-26684796 None:intergenic 30.0%
!! GAATAAAGAGCATTGAGAAA+TGG + chr8_3:26684800-26684819 None:intergenic 30.0%
TGTTTATCTTGAGTAGCTAA+TGG + chr8_3:26684880-26684899 None:intergenic 30.0%
!! GATGAGTTTTATCTCAATCT+TGG - chr8_3:26684916-26684935 Msa1284390:three_prime_UTR 30.0%
AGGTCTTTAACAAAGATCAA+AGG + chr8_3:26684973-26684992 None:intergenic 30.0%
! TGAGTTTTTAATGTTGGGTT+TGG - chr8_3:26685106-26685125 Msa1284390:CDS 30.0%
!! TGTTGGGTTTGGTAATTTTA+AGG - chr8_3:26685117-26685136 Msa1284390:CDS 30.0%
ACCATATATTCACATCCAAA+GGG + chr8_3:26685166-26685185 None:intergenic 30.0%
AACCATATATTCACATCCAA+AGG + chr8_3:26685167-26685186 None:intergenic 30.0%
TACCAGTAAATGTGTTCAAA+GGG + chr8_3:26685457-26685476 None:intergenic 30.0%
ATACCAGTAAATGTGTTCAA+AGG + chr8_3:26685458-26685477 None:intergenic 30.0%
!! AGAATTTTGTTTCGTGAGAT+TGG - chr8_3:26685521-26685540 Msa1284390:CDS 30.0%
GTTTGGATGTATACAGAATA+TGG - chr8_3:26685543-26685562 Msa1284390:intron 30.0%
ATCAATATCACATTCTCTGA+AGG + chr8_3:26685572-26685591 None:intergenic 30.0%
GAAAAAAACAGTTCACTAAG+TGG + chr8_3:26685929-26685948 None:intergenic 30.0%
! AGACAAGAGTGTATATAGAT+AGG - chr8_3:26686033-26686052 Msa1284390:CDS 30.0%
! GACAAGAGTGTATATAGATA+GGG - chr8_3:26686034-26686053 Msa1284390:CDS 30.0%
ATATGCTATACAGATAGAGA+TGG - chr8_3:26686089-26686108 Msa1284390:CDS 30.0%
GTGTCTTTGTCTTATAAGTA+TGG - chr8_3:26686238-26686257 Msa1284390:CDS 30.0%
!!! ATATTGGCTTCCAATTTTCT+TGG - chr8_3:26686310-26686329 Msa1284390:five_prime_UTR 30.0%
! TGTTGTTTAAGCATGATGAG+TGG + chr8_3:26684602-26684621 None:intergenic 35.0%
GAAAGATTGAGATTGCAAAG+AGG + chr8_3:26684721-26684740 None:intergenic 35.0%
TAAACAGAATCAGCATCAGA+AGG - chr8_3:26684894-26684913 Msa1284390:three_prime_UTR 35.0%
ACCCTTTGGATGTGAATATA+TGG - chr8_3:26685162-26685181 Msa1284390:CDS 35.0%
AAATGCCGATATAGTTAGGT+TGG - chr8_3:26685241-26685260 Msa1284390:CDS 35.0%
!! AAACTCATTGCCACTTTGTA+TGG - chr8_3:26685317-26685336 Msa1284390:CDS 35.0%
! CAGGGATGATGTAACATTTT+TGG - chr8_3:26685430-26685449 Msa1284390:CDS 35.0%
! TTTGTTTCGTGAGATTGGTT+TGG - chr8_3:26685526-26685545 Msa1284390:CDS 35.0%
CAGAGAATGTGATATTGATC+AGG - chr8_3:26685573-26685592 Msa1284390:intron 35.0%
AGAATGTGATATTGATCAGG+TGG - chr8_3:26685576-26685595 Msa1284390:intron 35.0%
GAAGCTAAAGGTGAATTTCA+AGG - chr8_3:26685629-26685648 Msa1284390:intron 35.0%
! GTGAATTTCAAGGTACTTCT+CGG - chr8_3:26685639-26685658 Msa1284390:intron 35.0%
AGGTACTTCTCGGTATAAAT+TGG - chr8_3:26685649-26685668 Msa1284390:intron 35.0%
CTTCTCGGTATAAATTGGAT+CGG - chr8_3:26685654-26685673 Msa1284390:intron 35.0%
! TCCAAATCCGACATTTTCAT+GGG - chr8_3:26685784-26685803 Msa1284390:intron 35.0%
GAACATGAACTAGAATCCAA+AGG + chr8_3:26685812-26685831 None:intergenic 35.0%
!! TGGATTCTAGTTCATGTTCA+TGG - chr8_3:26685813-26685832 Msa1284390:intron 35.0%
AGAGTGTATATAGATAGGGA+TGG - chr8_3:26686038-26686057 Msa1284390:CDS 35.0%
! TGTTGTTTAAGCATGATGAG+TGG + chr8_3:26684602-26684621 None:intergenic 35.0%
GAAAGATTGAGATTGCAAAG+AGG + chr8_3:26684721-26684740 None:intergenic 35.0%
TAAACAGAATCAGCATCAGA+AGG - chr8_3:26684894-26684913 Msa1284390:three_prime_UTR 35.0%
ACCCTTTGGATGTGAATATA+TGG - chr8_3:26685162-26685181 Msa1284390:CDS 35.0%
AAATGCCGATATAGTTAGGT+TGG - chr8_3:26685241-26685260 Msa1284390:CDS 35.0%
!! AAACTCATTGCCACTTTGTA+TGG - chr8_3:26685317-26685336 Msa1284390:CDS 35.0%
! CAGGGATGATGTAACATTTT+TGG - chr8_3:26685430-26685449 Msa1284390:CDS 35.0%
! TTTGTTTCGTGAGATTGGTT+TGG - chr8_3:26685526-26685545 Msa1284390:CDS 35.0%
CAGAGAATGTGATATTGATC+AGG - chr8_3:26685573-26685592 Msa1284390:intron 35.0%
AGAATGTGATATTGATCAGG+TGG - chr8_3:26685576-26685595 Msa1284390:intron 35.0%
GAAGCTAAAGGTGAATTTCA+AGG - chr8_3:26685629-26685648 Msa1284390:intron 35.0%
! GTGAATTTCAAGGTACTTCT+CGG - chr8_3:26685639-26685658 Msa1284390:intron 35.0%
AGGTACTTCTCGGTATAAAT+TGG - chr8_3:26685649-26685668 Msa1284390:intron 35.0%
CTTCTCGGTATAAATTGGAT+CGG - chr8_3:26685654-26685673 Msa1284390:intron 35.0%
! TCCAAATCCGACATTTTCAT+GGG - chr8_3:26685784-26685803 Msa1284390:intron 35.0%
GAACATGAACTAGAATCCAA+AGG + chr8_3:26685812-26685831 None:intergenic 35.0%
!! TGGATTCTAGTTCATGTTCA+TGG - chr8_3:26685813-26685832 Msa1284390:intron 35.0%
AGAGTGTATATAGATAGGGA+TGG - chr8_3:26686038-26686057 Msa1284390:CDS 35.0%
! GCAGTGAAATTTTGGACTGA+AGG + chr8_3:26684835-26684854 None:intergenic 40.0%
AGTCCAAAATTTCACTGCAC+AGG - chr8_3:26684837-26684856 Msa1284390:three_prime_UTR 40.0%
! CAACCTGTGCAGTGAAATTT+TGG + chr8_3:26684843-26684862 None:intergenic 40.0%
TGGCAAATGCCGATATAGTT+AGG - chr8_3:26685237-26685256 Msa1284390:CDS 40.0%
GGTGTCCAACCTAACTATAT+CGG + chr8_3:26685249-26685268 None:intergenic 40.0%
GACCCTTTGAACACATTTAC+TGG - chr8_3:26685452-26685471 Msa1284390:CDS 40.0%
!! AGTTGATCTTTTGGGCATTG+AGG - chr8_3:26685489-26685508 Msa1284390:CDS 40.0%
!!! TTTTGGGCATTGAGGTTTCA+TGG - chr8_3:26685497-26685516 Msa1284390:CDS 40.0%
TATTGATCAGGTGGAACTTG+AGG - chr8_3:26685585-26685604 Msa1284390:intron 40.0%
ATTGATCAGGTGGAACTTGA+GGG - chr8_3:26685586-26685605 Msa1284390:intron 40.0%
! AATTCACCTTTAGCTTCCCA+TGG + chr8_3:26685626-26685645 None:intergenic 40.0%
CGGTATAAATTGGATCGGAA+CGG - chr8_3:26685659-26685678 Msa1284390:intron 40.0%
TCCACAGAAGATGATGAAAC+CGG - chr8_3:26685724-26685743 Msa1284390:intron 40.0%
! GAAGATGATGAAACCGGTTT+CGG - chr8_3:26685730-26685749 Msa1284390:intron 40.0%
ACCAAATCCAAAACCGAAAC+CGG + chr8_3:26685746-26685765 None:intergenic 40.0%
! GTCCAAATCCGACATTTTCA+TGG - chr8_3:26685783-26685802 Msa1284390:intron 40.0%
! CCAAATCCGACATTTTCATG+GGG - chr8_3:26685785-26685804 Msa1284390:intron 40.0%
AAAGGACCCCATGAAAATGT+CGG + chr8_3:26685794-26685813 None:intergenic 40.0%
TCAAGCAGTTAAGCACACAT+TGG - chr8_3:26685847-26685866 Msa1284390:intron 40.0%
CAACACTGGTCCAAGAAAAT+TGG + chr8_3:26686323-26686342 None:intergenic 40.0%
! CAATTTTCTTGGACCAGTGT+TGG - chr8_3:26686321-26686340 Msa1284390:five_prime_UTR 40.0%
TATTTGCATCTGACCAACAC+TGG + chr8_3:26686337-26686356 None:intergenic 40.0%
! GCAGTGAAATTTTGGACTGA+AGG + chr8_3:26684835-26684854 None:intergenic 40.0%
AGTCCAAAATTTCACTGCAC+AGG - chr8_3:26684837-26684856 Msa1284390:three_prime_UTR 40.0%
! CAACCTGTGCAGTGAAATTT+TGG + chr8_3:26684843-26684862 None:intergenic 40.0%
TGGCAAATGCCGATATAGTT+AGG - chr8_3:26685237-26685256 Msa1284390:CDS 40.0%
GGTGTCCAACCTAACTATAT+CGG + chr8_3:26685249-26685268 None:intergenic 40.0%
GACCCTTTGAACACATTTAC+TGG - chr8_3:26685452-26685471 Msa1284390:CDS 40.0%
!! AGTTGATCTTTTGGGCATTG+AGG - chr8_3:26685489-26685508 Msa1284390:CDS 40.0%
!!! TTTTGGGCATTGAGGTTTCA+TGG - chr8_3:26685497-26685516 Msa1284390:CDS 40.0%
TATTGATCAGGTGGAACTTG+AGG - chr8_3:26685585-26685604 Msa1284390:intron 40.0%
ATTGATCAGGTGGAACTTGA+GGG - chr8_3:26685586-26685605 Msa1284390:intron 40.0%
! AATTCACCTTTAGCTTCCCA+TGG + chr8_3:26685626-26685645 None:intergenic 40.0%
CGGTATAAATTGGATCGGAA+CGG - chr8_3:26685659-26685678 Msa1284390:intron 40.0%
TCCACAGAAGATGATGAAAC+CGG - chr8_3:26685724-26685743 Msa1284390:intron 40.0%
! GAAGATGATGAAACCGGTTT+CGG - chr8_3:26685730-26685749 Msa1284390:intron 40.0%
ACCAAATCCAAAACCGAAAC+CGG + chr8_3:26685746-26685765 None:intergenic 40.0%
! GTCCAAATCCGACATTTTCA+TGG - chr8_3:26685783-26685802 Msa1284390:intron 40.0%
! CCAAATCCGACATTTTCATG+GGG - chr8_3:26685785-26685804 Msa1284390:intron 40.0%
AAAGGACCCCATGAAAATGT+CGG + chr8_3:26685794-26685813 None:intergenic 40.0%
TCAAGCAGTTAAGCACACAT+TGG - chr8_3:26685847-26685866 Msa1284390:intron 40.0%
CAACACTGGTCCAAGAAAAT+TGG + chr8_3:26686323-26686342 None:intergenic 40.0%
! CAATTTTCTTGGACCAGTGT+TGG - chr8_3:26686321-26686340 Msa1284390:five_prime_UTR 40.0%
TATTTGCATCTGACCAACAC+TGG + chr8_3:26686337-26686356 None:intergenic 40.0%
! CAAAGGCATATCCTCACGAA+GGG + chr8_3:26684956-26684975 None:intergenic 45.0%
! TCAAAGGCATATCCTCACGA+AGG + chr8_3:26684957-26684976 None:intergenic 45.0%
TTGATCAGGTGGAACTTGAG+GGG - chr8_3:26685587-26685606 Msa1284390:intron 45.0%
! ACCGGTTTCATCATCTTCTG+TGG + chr8_3:26685728-26685747 None:intergenic 45.0%
!! GATGAAACCGGTTTCGGTTT+TGG - chr8_3:26685736-26685755 Msa1284390:intron 45.0%
!!! ACCGGTTTCGGTTTTGGATT+TGG - chr8_3:26685742-26685761 Msa1284390:intron 45.0%
ATGTCGGATTTGGACTTGCA+GGG + chr8_3:26685778-26685797 None:intergenic 45.0%
AATGTCGGATTTGGACTTGC+AGG + chr8_3:26685779-26685798 None:intergenic 45.0%
CCCCATGAAAATGTCGGATT+TGG + chr8_3:26685788-26685807 None:intergenic 45.0%
! GACATTTTCATGGGGTCCTT+TGG - chr8_3:26685793-26685812 Msa1284390:intron 45.0%
AGACAGTTGTTACCACCAGA+TGG - chr8_3:26685878-26685897 Msa1284390:intron 45.0%
GTTGTTACCACCAGATGGTT+TGG - chr8_3:26685883-26685902 Msa1284390:intron 45.0%
GAACATGTAGCCAAACCATC+TGG + chr8_3:26685896-26685915 None:intergenic 45.0%
! CAAAGGCATATCCTCACGAA+GGG + chr8_3:26684956-26684975 None:intergenic 45.0%
! TCAAAGGCATATCCTCACGA+AGG + chr8_3:26684957-26684976 None:intergenic 45.0%
TTGATCAGGTGGAACTTGAG+GGG - chr8_3:26685587-26685606 Msa1284390:intron 45.0%
! ACCGGTTTCATCATCTTCTG+TGG + chr8_3:26685728-26685747 None:intergenic 45.0%
!! GATGAAACCGGTTTCGGTTT+TGG - chr8_3:26685736-26685755 Msa1284390:intron 45.0%
!!! ACCGGTTTCGGTTTTGGATT+TGG - chr8_3:26685742-26685761 Msa1284390:intron 45.0%
ATGTCGGATTTGGACTTGCA+GGG + chr8_3:26685778-26685797 None:intergenic 45.0%
AATGTCGGATTTGGACTTGC+AGG + chr8_3:26685779-26685798 None:intergenic 45.0%
CCCCATGAAAATGTCGGATT+TGG + chr8_3:26685788-26685807 None:intergenic 45.0%
! GACATTTTCATGGGGTCCTT+TGG - chr8_3:26685793-26685812 Msa1284390:intron 45.0%
AGACAGTTGTTACCACCAGA+TGG - chr8_3:26685878-26685897 Msa1284390:intron 45.0%
GTTGTTACCACCAGATGGTT+TGG - chr8_3:26685883-26685902 Msa1284390:intron 45.0%
GAACATGTAGCCAAACCATC+TGG + chr8_3:26685896-26685915 None:intergenic 45.0%
TTTCACTGCACAGGTTGCTC+AGG - chr8_3:26684846-26684865 Msa1284390:three_prime_UTR 50.0%
TGCTGTTAGAACCCTTCGTG+AGG - chr8_3:26684942-26684961 Msa1284390:three_prime_UTR 50.0%
TCTGTAAGGCCTAGCTCAAC+TGG - chr8_3:26685217-26685236 Msa1284390:CDS 50.0%
! TAGGTTGGACACCTTCACCT+AGG - chr8_3:26685256-26685275 Msa1284390:CDS 50.0%
AGTGGTTCGAACCTAGGTGA+AGG + chr8_3:26685270-26685289 None:intergenic 50.0%
ATACACCACTTCACTGCGAG+TGG + chr8_3:26685288-26685307 None:intergenic 50.0%
TTAGCTTCCCATGGAACCCT+AGG + chr8_3:26685617-26685636 None:intergenic 50.0%
AGGGTTCCATGGGAAGCTAA+AGG - chr8_3:26685617-26685636 Msa1284390:intron 50.0%
CATGTAGCCAAACCATCTGG+TGG + chr8_3:26685893-26685912 None:intergenic 50.0%
TTTCACTGCACAGGTTGCTC+AGG - chr8_3:26684846-26684865 Msa1284390:three_prime_UTR 50.0%
TGCTGTTAGAACCCTTCGTG+AGG - chr8_3:26684942-26684961 Msa1284390:three_prime_UTR 50.0%
TCTGTAAGGCCTAGCTCAAC+TGG - chr8_3:26685217-26685236 Msa1284390:CDS 50.0%
! TAGGTTGGACACCTTCACCT+AGG - chr8_3:26685256-26685275 Msa1284390:CDS 50.0%
AGTGGTTCGAACCTAGGTGA+AGG + chr8_3:26685270-26685289 None:intergenic 50.0%
ATACACCACTTCACTGCGAG+TGG + chr8_3:26685288-26685307 None:intergenic 50.0%
TTAGCTTCCCATGGAACCCT+AGG + chr8_3:26685617-26685636 None:intergenic 50.0%
AGGGTTCCATGGGAAGCTAA+AGG - chr8_3:26685617-26685636 Msa1284390:intron 50.0%
CATGTAGCCAAACCATCTGG+TGG + chr8_3:26685893-26685912 None:intergenic 50.0%
CGGCATTTGCCAGTTGAGCT+AGG + chr8_3:26685229-26685248 None:intergenic 55.0%
ACTGCGAGTGGTTCGAACCT+AGG + chr8_3:26685276-26685295 None:intergenic 55.0%
TCGAACCACTCGCAGTGAAG+TGG - chr8_3:26685280-26685299 Msa1284390:CDS 55.0%
! GAACTTGAGGGGTGTGCCTA+GGG - chr8_3:26685598-26685617 Msa1284390:intron 55.0%
CGGCATTTGCCAGTTGAGCT+AGG + chr8_3:26685229-26685248 None:intergenic 55.0%
ACTGCGAGTGGTTCGAACCT+AGG + chr8_3:26685276-26685295 None:intergenic 55.0%
TCGAACCACTCGCAGTGAAG+TGG - chr8_3:26685280-26685299 Msa1284390:CDS 55.0%
! GAACTTGAGGGGTGTGCCTA+GGG - chr8_3:26685598-26685617 Msa1284390:intron 55.0%
! GGAACTTGAGGGGTGTGCCT+AGG - chr8_3:26685597-26685616 Msa1284390:intron 60.0%
GGGTGTGCCTAGGGTTCCAT+GGG - chr8_3:26685607-26685626 Msa1284390:intron 60.0%
! GGAACTTGAGGGGTGTGCCT+AGG - chr8_3:26685597-26685616 Msa1284390:intron 60.0%
GGGTGTGCCTAGGGTTCCAT+GGG - chr8_3:26685607-26685626 Msa1284390:intron 60.0%
GGGGTGTGCCTAGGGTTCCA+TGG - chr8_3:26685606-26685625 Msa1284390:intron 65.0%
GGGGTGTGCCTAGGGTTCCA+TGG - chr8_3:26685606-26685625 Msa1284390:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 26684592 26686389 26684592 ID=Msa1284390;Name=Msa1284390
chr8_3 mRNA 26684592 26686389 26684592 ID=Msa1284390-mRNA-1;Parent=Msa1284390;Name=Msa1284390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=117|1|1|1|1|1|2|470|262
chr8_3 exon 26684592 26685548 26684592 ID=Msa1284390-mRNA-1:exon:9276;Parent=Msa1284390-mRNA-1
chr8_3 exon 26685971 26686389 26685971 ID=Msa1284390-mRNA-1:exon:9275;Parent=Msa1284390-mRNA-1
chr8_3 five_prime_UTR 26686273 26686389 26686273 ID=Msa1284390-mRNA-1:five_prime_utr;Parent=Msa1284390-mRNA-1
chr8_3 CDS 26685971 26686272 26685971 ID=Msa1284390-mRNA-1:cds;Parent=Msa1284390-mRNA-1
chr8_3 CDS 26685062 26685548 26685062 ID=Msa1284390-mRNA-1:cds;Parent=Msa1284390-mRNA-1
chr8_3 three_prime_UTR 26684592 26685061 26684592 ID=Msa1284390-mRNA-1:three_prime_utr;Parent=Msa1284390-mRNA-1
Gene Sequence

>Msa1284390

ATGGCTTTTCCTCTTTGCAATCTCAATCTTTCTCTATTACCTCAATCCAAATCAAGATTCAAACACCAAACACTTTCTTCTTCAAAACCCATTTCTCAATGCTCTTTATTCTTCTCTTCTTCTCCTTCAGTCCAAAATTTCACTGCACAGGTTGCTCAGGTGAATTCACCATTAGCTACTCAAGATAAACAGAATCAGCATCAGAAGGATGAGTTTTATCTCAATCTTGGTGTTGCTGTTAGAACCCTTCGTGAGGATATGCCTTTGATCTTTGTTAAAGACCTTAATTATGATATTTATAGGGATGATGTAACATTTTTGGACCCTTTGAACACATTTACTGGTATTGAAAAGTACAAGTTGATCTTTTGGGCATTGAGGTTTCATGGTAGAATTTTGTTTCGTGAGATTGGTTTGGATGTATACAGAATATGGCAGCCTTCAGAGAATGTGATATTGATCAGGTGGAACTTGAGGGGTGTGCCTAGGGTTCCATGGGAAGCTAAAGGTGAATTTCAAGGTACTTCTCGGTATAAATTGGATCGGAACGGTAAGATTTATGAACACAAAGTTGATAATTTAGCATTCAACTTTCCACAGAAGATGATGAAACCGGTTTCGGTTTTGGATTTGGTTACTGCTTGCCCTGCAAGTCCAAATCCGACATTTTCATGGGGTCCTTTGGATTCTAGTTCATGTTCATGGATAGAATTATATCAAGCAGTTAAGCACACATTGGATGAAGAAAGACAGTTGTTACCACCAGATGGTTTGGCTACATGTTCATAG

Protein sequence

>Msa1284390

MAFPLCNLNLSLLPQSKSRFKHQTLSSSKPISQCSLFFSSSPSVQNFTAQVAQVNSPLATQDKQNQHQKDEFYLNLGVAVRTLREDMPLIFVKDLNYDIYRDDVTFLDPLNTFTGIEKYKLIFWALRFHGRILFREIGLDVYRIWQPSENVILIRWNLRGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHKVDNLAFNFPQKMMKPVSVLDLVTACPASPNPTFSWGPLDSSSCSWIELYQAVKHTLDEERQLLPPDGLATCS*