AlfalfaGEDB | Msa1309890

M. sativa cultivar zhongmu-4 / Msa1309890

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005911 GO:0006082 GO:0006109 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009815 GO:0009889 GO:0009987 GO:0010439 GO:0010675 GO:0016143 GO:0016144 GO:0016491 GO:0016638 GO:0016641 GO:0019222 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0030054 GO:0031323 GO:0031326 GO:0042762 GO:0043255 GO:0043436 GO:0043455 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0050789 GO:0050794 GO:0051171 GO:0055044 GO:0055114 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:1900376 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659
PFAM: PF14226.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1309890	RHN38772.1	91.429	175	15	0	1	175	1	175	1.25e-116	338

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1309890	sp\|Q9LTH7\|ACH12_ARATH	54.545	165	67	5	17	175	14	176	3.98e-54	178

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1309890	A0A396GAK3	91.429	175	15	0	1	175	1	175	5.96e-117	338

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006050	Msa1309890	0.829013	6.527928e-55	-8.615850e-47
Msa0026930	Msa1309890	0.800626	1.319226e-48	-8.615850e-47
Msa0047470	Msa1309890	0.821585	3.734509e-53	-8.615850e-47
Msa0074780	Msa1309890	0.809445	1.885340e-50	-8.615850e-47
Msa0101650	Msa1309890	0.846471	2.127262e-59	-8.615850e-47
Msa0606680	Msa1309890	0.801792	7.617844e-49	-8.615850e-47
Msa0618520	Msa1309890	0.801227	9.945227e-49	-8.615850e-47
Msa0639030	Msa1309890	0.802298	5.994339e-49	-8.615850e-47
Msa0646390	Msa1309890	0.806393	8.408073e-50	-8.615850e-47
Msa0656270	Msa1309890	0.809404	1.924281e-50	-8.615850e-47
Msa0700070	Msa1309890	0.801771	7.692835e-49	-8.615850e-47
Msa0734760	Msa1309890	0.806349	8.588394e-50	-8.615850e-47
Msa0752580	Msa1309890	0.809895	1.508984e-50	-8.615850e-47
Msa0771960	Msa1309890	0.800614	1.326718e-48	-8.615850e-47
Msa0773260	Msa1309890	0.810995	8.732802e-51	-8.615850e-47
Msa0773290	Msa1309890	0.803480	3.417519e-49	-8.615850e-47
Msa0797010	Msa1309890	0.814352	1.609963e-51	-8.615850e-47
Msa0813630	Msa1309890	0.805756	1.144971e-49	-8.615850e-47
Msa0822370	Msa1309890	0.817289	3.561859e-52	-8.615850e-47
Msa0173280	Msa1309890	0.804921	1.713037e-49	-8.615850e-47
Msa0185950	Msa1309890	0.801682	8.022760e-49	-8.615850e-47
Msa0197730	Msa1309890	0.801140	1.036335e-48	-8.615850e-47
Msa0200840	Msa1309890	0.814471	1.515210e-51	-8.615850e-47
Msa0200870	Msa1309890	0.829085	6.270701e-55	-8.615850e-47
Msa0203180	Msa1309890	0.833785	4.369246e-56	-8.615850e-47
Msa0222720	Msa1309890	0.814140	1.793119e-51	-8.615850e-47
Msa1235040	Msa1309890	0.804768	1.843747e-49	-8.615850e-47
Msa1253970	Msa1309890	0.815239	1.023479e-51	-8.615850e-47
Msa1272130	Msa1309890	0.864086	1.565968e-64	-8.615850e-47
Msa1274310	Msa1309890	0.813497	2.484055e-51	-8.615850e-47
Msa1279310	Msa1309890	0.809836	1.553830e-50	-8.615850e-47
Msa1282210	Msa1309890	0.821322	4.293660e-53	-8.615850e-47
Msa1299370	Msa1309890	0.825699	4.064654e-54	-8.615850e-47
Msa1309890	Msa1384980	0.801148	1.032090e-48	-8.615850e-47
Msa1309890	Msa1405470	0.800167	1.636684e-48	-8.615850e-47
Msa1309890	Msa1413900	0.806924	6.495378e-50	-8.615850e-47
Msa1309890	Msa1428440	0.809336	1.989913e-50	-8.615850e-47
Msa1309890	Msa1440180	0.825545	4.422972e-54	-8.615850e-47
Msa1309890	Msa1449740	0.825325	4.984262e-54	-8.615850e-47
Msa1309890	Msa1459260	0.804648	1.952831e-49	-8.615850e-47
Msa0369780	Msa1309890	0.806849	6.735895e-50	-8.615850e-47
Msa0378670	Msa1309890	0.819143	1.356061e-52	-8.615850e-47
Msa0378700	Msa1309890	0.811356	7.292185e-51	-8.615850e-47
Msa0379500	Msa1309890	0.813936	1.988416e-51	-8.615850e-47
Msa0389050	Msa1309890	0.824290	8.743624e-54	-8.615850e-47
Msa0411000	Msa1309890	0.830770	2.435524e-55	-8.615850e-47
Msa0417150	Msa1309890	0.815460	9.141617e-52	-8.615850e-47
Msa0454940	Msa1309890	0.803191	3.921220e-49	-8.615850e-47
Msa0455230	Msa1309890	0.829187	5.924157e-55	-8.615850e-47
Msa0455610	Msa1309890	0.811277	7.588818e-51	-8.615850e-47
Msa0457380	Msa1309890	0.814537	1.464705e-51	-8.615850e-47
Msa0985040	Msa1309890	0.816331	5.844254e-52	-8.615850e-47
Msa1010470	Msa1309890	0.800033	1.742567e-48	-8.615850e-47
Msa1014350	Msa1309890	0.801690	7.993866e-49	-8.615850e-47
Msa1052030	Msa1309890	0.822206	2.681813e-53	-8.615850e-47
Msa1071310	Msa1309890	0.815310	9.870919e-52	-8.615850e-47
Msa1096510	Msa1309890	0.810672	1.026026e-50	-8.615850e-47
Msa1096570	Msa1309890	0.800591	1.341523e-48	-8.615850e-47
Msa0243470	Msa1309890	0.830164	3.426988e-55	-8.615850e-47
Msa0246300	Msa1309890	0.829904	3.964167e-55	-8.615850e-47
Msa0264020	Msa1309890	0.818319	2.086078e-52	-8.615850e-47
Msa0281940	Msa1309890	0.818653	1.751888e-52	-8.615850e-47
Msa0284870	Msa1309890	0.803918	2.772134e-49	-8.615850e-47
Msa0292860	Msa1309890	0.815008	1.151694e-51	-8.615850e-47
Msa0311330	Msa1309890	0.817518	3.163892e-52	-8.615850e-47
Msa0311340	Msa1309890	0.804878	1.748705e-49	-8.615850e-47
Msa0323630	Msa1309890	0.803292	3.737747e-49	-8.615850e-47
Msa0363460	Msa1309890	0.825016	5.896922e-54	-8.615850e-47
Msa1113280	Msa1309890	0.817192	3.746612e-52	-8.615850e-47
Msa1117830	Msa1309890	0.825071	5.725223e-54	-8.615850e-47
Msa1131900	Msa1309890	0.800458	1.427614e-48	-8.615850e-47
Msa1182780	Msa1309890	0.817035	4.063002e-52	-8.615850e-47
Msa1182990	Msa1309890	0.905196	5.538118e-80	-8.615850e-47
Msa1186580	Msa1309890	0.801294	9.636356e-49	-8.615850e-47
Msa1193400	Msa1309890	0.811468	6.895896e-51	-8.615850e-47
Msa1209790	Msa1309890	0.805651	1.204607e-49	-8.615850e-47
Msa1211260	Msa1309890	0.821859	3.227330e-53	-8.615850e-47
Msa1211300	Msa1309890	0.810669	1.027372e-50	-8.615850e-47
Msa1211390	Msa1309890	0.832118	1.134298e-55	-8.615850e-47
Msa0509540	Msa1309890	0.804279	2.330867e-49	-8.615850e-47
Msa0534380	Msa1309890	0.820563	6.419442e-53	-8.615850e-47
Msa0537310	Msa1309890	0.835187	1.941669e-56	-8.615850e-47
Msa0549740	Msa1309890	0.809145	2.186890e-50	-8.615850e-47
Msa0568610	Msa1309890	0.801814	7.539617e-49	-8.615850e-47
Msa0598250	Msa1309890	0.802146	6.444043e-49	-8.615850e-47
Msa0600820	Msa1309890	0.822616	2.153732e-53	-8.615850e-47
Msa0861480	Msa1309890	0.809793	1.587044e-50	-8.615850e-47
Msa0861560	Msa1309890	0.828343	9.476982e-55	-8.615850e-47
Msa0861800	Msa1309890	0.826684	2.370617e-54	-8.615850e-47
Msa0868040	Msa1309890	0.822063	2.893837e-53	-8.615850e-47
Msa0873010	Msa1309890	0.800425	1.449767e-48	-8.615850e-47
Msa0883410	Msa1309890	0.817091	3.946934e-52	-8.615850e-47
Msa0934830	Msa1309890	0.823947	1.052397e-53	-8.615850e-47
Msa0967670	Msa1309890	0.808130	3.603079e-50	-8.615850e-47
Msa0975560	Msa1309890	0.801741	7.803732e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1309890	MtrunA17_Chr8g0336791	91.429	175	15	0	1	175	1	175	1.15e-120	338
Msa1309890	MtrunA17_Chr8g0336831	90.857	175	16	0	1	175	1	175	6.97e-119	336
Msa1309890	MtrunA17_Chr8g0336861	82.286	175	31	0	1	175	1	175	3.28e-104	303
Msa1309890	MtrunA17_Chr8g0336781	80.000	175	35	0	1	175	36	210	1.70e-103	302
Msa1309890	MtrunA17_Chr8g0348081	81.714	175	31	1	1	175	1	174	2.34e-101	296
Msa1309890	MtrunA17_Chr8g0336851	77.143	175	39	1	1	175	1	174	2.38e-98	288
Msa1309890	MtrunA17_Chr8g0336761	74.857	175	43	1	1	175	1	174	1.02e-93	276
Msa1309890	MtrunA17_Chr8g0336631	75.000	176	42	2	1	175	1	175	1.79e-93	276
Msa1309890	MtrunA17_Chr4g0066121	68.750	176	53	2	1	175	1	175	4.58e-82	247
Msa1309890	MtrunA17_Chr2g0311761	62.805	164	56	3	15	175	20	181	9.87e-68	210
Msa1309890	MtrunA17_Chr2g0311831	59.146	164	62	3	15	175	20	181	1.58e-63	199
Msa1309890	MtrunA17_Chr2g0311921	56.707	164	66	3	15	175	6	167	6.31e-63	197
Msa1309890	MtrunA17_Chr1g0167911	52.761	163	72	4	15	175	7	166	2.69e-53	173
Msa1309890	MtrunA17_Chr1g0167951	53.797	158	69	4	19	175	11	165	3.54e-53	172
Msa1309890	MtrunA17_Chr8g0336751	53.374	163	71	4	16	175	47	207	4.43e-53	173
Msa1309890	MtrunA17_Chr1g0168001	51.479	169	71	5	15	175	7	172	1.58e-52	165
Msa1309890	MtrunA17_Chr2g0311861	52.542	177	58	5	2	175	4	157	4.47e-52	169
Msa1309890	MtrunA17_Chr1g0167961	52.047	171	75	6	8	175	16	182	1.46e-50	166
Msa1309890	MtrunA17_Chr8g0354261	48.485	165	76	4	17	175	22	183	6.41e-47	157
Msa1309890	MtrunA17_Chr8g0354241	47.879	165	77	4	17	175	22	183	7.36e-47	157
Msa1309890	MtrunA17_Chr7g0225881	41.667	168	86	3	15	175	15	177	2.23e-42	145
Msa1309890	MtrunA17_Chr8g0335411	41.615	161	90	3	17	175	22	180	2.70e-42	145
Msa1309890	MtrunA17_Chr1g0187821	41.916	167	85	5	17	175	18	180	4.55e-42	144
Msa1309890	MtrunA17_Chr7g0235951	41.975	162	90	4	16	175	21	180	1.41e-41	143
Msa1309890	MtrunA17_Chr7g0236011	42.236	161	89	4	17	175	22	180	1.75e-41	142
Msa1309890	MtrunA17_Chr7g0247991	40.994	161	91	3	17	175	22	180	2.11e-41	142
Msa1309890	MtrunA17_Chr6g0472861	43.103	174	80	5	15	175	15	182	3.51e-41	142
Msa1309890	MtrunA17_Chr8g0364161	41.250	160	90	3	16	173	21	178	4.76e-41	136
Msa1309890	MtrunA17_Chr1g0187811	43.023	172	81	5	17	175	134	301	1.99e-40	142
Msa1309890	MtrunA17_Chr8g0364471	38.333	180	104	5	1	175	3	180	1.11e-39	138
Msa1309890	MtrunA17_Chr2g0311701	40.491	163	91	3	16	174	21	181	1.62e-39	137
Msa1309890	MtrunA17_Chr4g0055591	41.243	177	87	5	8	175	1	169	2.19e-39	137
Msa1309890	MtrunA17_Chr2g0311711	41.718	163	89	3	16	174	19	179	5.96e-39	136
Msa1309890	MtrunA17_Chr4g0011311	40.373	161	92	4	17	175	22	180	1.45e-38	134
Msa1309890	MtrunA17_Chr2g0311681	38.333	180	100	5	1	174	1	175	8.22e-38	133
Msa1309890	MtrunA17_Chr1g0187831	41.667	168	86	5	17	175	19	183	1.11e-37	133
Msa1309890	MtrunA17_Chr2g0311691	37.778	180	101	5	1	174	1	175	8.18e-37	130
Msa1309890	MtrunA17_Chr8g0362741	39.490	157	77	5	17	171	22	162	1.90e-32	117
Msa1309890	MtrunA17_Chr7g0266651	37.975	158	96	2	19	175	15	171	1.58e-31	116
Msa1309890	MtrunA17_Chr1g0161081	37.888	161	91	3	19	175	28	183	3.56e-31	115
Msa1309890	MtrunA17_Chr1g0184241	38.509	161	94	2	17	175	23	180	6.77e-31	115
Msa1309890	MtrunA17_Chr1g0161111	37.888	161	91	3	19	175	87	242	9.31e-31	115
Msa1309890	MtrunA17_Chr4g0066991	36.646	161	78	5	17	175	22	160	3.35e-30	112
Msa1309890	MtrunA17_Chr1g0161041	38.509	161	90	3	19	175	51	206	4.16e-30	113
Msa1309890	MtrunA17_Chr2g0311741	40.426	141	78	3	39	175	2	140	5.60e-30	111
Msa1309890	MtrunA17_Chr2g0311751	43.089	123	68	2	54	176	21	141	1.58e-29	106
Msa1309890	MtrunA17_Chr1g0167931	38.650	163	57	4	15	175	7	128	1.56e-26	102
Msa1309890	MtrunA17_Chr7g0235991	37.931	116	70	2	60	175	21	134	7.63e-25	95.5
Msa1309890	MtrunA17_Chr7g0235981	35.032	157	68	5	21	176	12	135	1.74e-22	92.0
Msa1309890	MtrunA17_Chr8g0375571	34.266	143	91	2	27	167	10	151	4.50e-20	85.5
Msa1309890	MtrunA17_Chr2g0311641	36.364	132	75	5	26	153	20	146	4.83e-19	79.7
Msa1309890	MtrunA17_Chr7g0242551	31.210	157	100	4	14	163	1	156	3.15e-18	80.5
Msa1309890	MtrunA17_Chr2g0311621	41.000	100	53	3	26	123	20	115	4.72e-18	75.5
Msa1309890	MtrunA17_Chr2g0311631	36.364	132	75	5	26	153	20	146	1.39e-17	79.0
Msa1309890	MtrunA17_Chr8g0375641	31.757	148	96	4	27	171	17	162	4.19e-16	72.0
Msa1309890	MtrunA17_Chr8g0375591	36.792	106	64	2	28	130	11	116	4.21e-16	70.9
Msa1309890	MtrunA17_Chr8g0375661	30.405	148	98	4	27	171	17	162	6.14e-16	71.6
Msa1309890	MtrunA17_Chr5g0420891	32.450	151	89	6	28	173	12	154	1.27e-15	70.5
Msa1309890	MtrunA17_Chr8g0375671	31.973	147	95	4	28	171	18	162	2.74e-15	72.4
Msa1309890	MtrunA17_Chr1g0179801	29.252	147	93	3	27	165	26	169	8.96e-15	70.9
Msa1309890	MtrunA17_Chr3g0093741	30.573	157	94	4	26	175	16	164	9.63e-15	70.9
Msa1309890	MtrunA17_Chr5g0423211	32.667	150	90	6	28	173	13	155	1.14e-14	70.5
Msa1309890	MtrunA17_Chr5g0423201	32.000	150	94	4	27	173	12	156	1.78e-14	70.1
Msa1309890	MtrunA17_Chr5g0421101	33.108	148	88	5	28	171	13	153	2.35e-14	69.7
Msa1309890	MtrunA17_Chr3g0128001	32.110	109	68	1	60	168	38	140	3.75e-14	68.9
Msa1309890	MtrunA17_Chr3g0093751	29.299	157	96	4	26	175	16	164	5.50e-14	68.6
Msa1309890	MtrunA17_Chr5g0420901	32.450	151	89	6	28	173	12	154	1.01e-13	67.8
Msa1309890	MtrunA17_Chr5g0421091	32.000	150	91	6	28	173	11	153	1.37e-13	67.4
Msa1309890	MtrunA17_Chr5g0421011	31.159	138	77	5	47	173	25	155	2.32e-13	67.0
Msa1309890	MtrunA17_Chr4g0006371	28.000	150	91	3	28	161	14	162	2.69e-13	66.6
Msa1309890	MtrunA17_Chr5g0426891	26.087	138	99	2	27	161	3	140	2.99e-13	66.6
Msa1309890	MtrunA17_Chr8g0375601	28.966	145	96	4	28	167	11	153	4.14e-13	66.2
Msa1309890	MtrunA17_Chr5g0420951	27.381	168	111	4	11	173	1	162	7.03e-13	65.5
Msa1309890	MtrunA17_Chr5g0423221	30.263	152	93	6	27	173	36	179	7.76e-13	65.5
Msa1309890	MtrunA17_Chr8g0345831	29.245	106	72	1	56	161	38	140	9.85e-13	65.1
Msa1309890	MtrunA17_Chr3g0126741	29.078	141	95	3	26	161	21	161	1.37e-12	64.7
Msa1309890	MtrunA17_Chr1g0162191	31.579	114	71	3	60	171	47	155	2.08e-12	64.3
Msa1309890	MtrunA17_Chr3g0113641	28.571	119	81	2	60	175	50	167	2.08e-12	64.3
Msa1309890	MtrunA17_Chr3g0093761	31.618	136	76	5	26	153	16	142	2.15e-12	63.9
Msa1309890	MtrunA17_Chr5g0423251	30.986	142	81	5	27	161	12	143	5.67e-12	62.8
Msa1309890	MtrunA17_Chr7g0250511	23.841	151	108	3	15	161	1	148	6.26e-12	62.8
Msa1309890	MtrunA17_Chr5g0421041	30.496	141	81	5	27	161	12	141	1.09e-11	62.0
Msa1309890	MtrunA17_Chr7g0239101	29.927	137	88	3	28	161	20	151	2.21e-11	61.2
Msa1309890	MtrunA17_Chr5g0420941	29.605	152	94	6	27	173	10	153	3.63e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1309890	AT5G59540.2	54.545	165	67	5	17	175	14	176	8.89e-56	177
Msa1309890	AT5G59540.1	54.545	165	67	5	17	175	14	176	4.04e-55	178
Msa1309890	AT1G06640.3	49.143	175	77	5	9	175	8	178	3.09e-51	166
Msa1309890	AT5G43440.2	47.305	167	80	2	15	175	11	175	3.67e-51	166
Msa1309890	AT1G06640.2	49.143	175	77	5	9	175	8	178	3.68e-51	167
Msa1309890	AT1G06650.1	48.193	166	79	3	16	175	14	178	4.77e-51	166
Msa1309890	AT1G06640.1	49.143	175	77	5	9	175	8	178	1.67e-50	166
Msa1309890	AT1G06650.2	48.193	166	79	3	16	175	14	178	1.98e-50	166
Msa1309890	AT5G43440.1	47.305	167	80	2	15	175	11	175	3.43e-50	165
Msa1309890	AT1G06620.2	48.428	159	77	3	19	174	18	174	8.26e-50	162
Msa1309890	AT1G06645.1	47.222	180	87	3	4	176	16	194	2.92e-49	163
Msa1309890	AT1G04350.1	48.795	166	73	5	16	175	10	169	5.06e-49	162
Msa1309890	AT1G06620.1	48.428	159	77	3	19	174	18	174	8.81e-49	162
Msa1309890	AT5G59530.1	51.220	164	73	7	17	175	13	174	5.83e-47	157
Msa1309890	AT2G30830.1	44.720	161	87	2	16	175	9	168	6.03e-46	154
Msa1309890	AT1G03410.2	45.732	164	83	3	16	174	8	170	2.26e-44	150
Msa1309890	AT2G30840.2	43.636	165	85	4	16	174	9	171	4.25e-44	148
Msa1309890	AT1G03410.1	45.732	164	83	3	16	174	45	207	5.34e-44	150
Msa1309890	AT5G43450.2	42.515	167	85	4	15	175	11	172	5.41e-44	147
Msa1309890	AT2G25450.1	45.342	161	84	3	16	174	9	167	6.41e-44	149
Msa1309890	AT2G30840.3	43.293	164	87	3	16	174	9	171	7.13e-44	149
Msa1309890	AT2G30840.1	43.293	164	87	3	16	174	9	171	8.47e-44	149
Msa1309890	AT5G43450.1	42.515	167	85	4	15	175	11	172	3.17e-43	147
Msa1309890	AT1G04380.2	43.478	161	72	5	16	175	13	155	2.74e-41	140
Msa1309890	AT1G04380.1	43.478	161	72	5	16	175	13	155	1.69e-40	140
Msa1309890	AT3G61400.2	40.678	177	97	3	5	174	2	177	2.46e-40	138
Msa1309890	AT3G61400.1	40.678	177	97	3	5	174	2	177	9.39e-40	138
Msa1309890	AT1G03400.1	41.718	163	81	5	16	174	8	160	3.91e-36	129
Msa1309890	AT1G03400.2	41.718	163	81	5	16	174	8	160	1.22e-35	128
Msa1309890	AT3G13610.1	31.210	157	91	6	26	175	25	171	1.70e-18	81.6
Msa1309890	AT1G55290.1	30.496	141	85	4	26	160	24	157	4.59e-17	77.8
Msa1309890	AT3G12900.1	30.263	152	101	4	26	175	20	168	1.16e-15	73.9
Msa1309890	AT2G36690.2	30.667	150	92	5	25	165	18	164	4.27e-15	72.4
Msa1309890	AT2G36690.1	30.667	150	92	5	25	165	18	164	4.27e-15	72.4
Msa1309890	AT3G55970.2	26.471	170	115	4	15	175	1	169	1.39e-12	64.7
Msa1309890	AT3G55970.1	26.471	170	115	4	15	175	1	169	1.79e-12	64.7
Msa1309890	AT5G07480.1	27.907	129	91	2	33	161	18	144	4.45e-12	63.5
Msa1309890	AT2G38240.1	27.703	148	97	3	28	171	12	153	9.11e-12	62.8
Msa1309890	AT2G44800.1	25.641	156	102	4	15	161	1	151	9.29e-12	62.8
Msa1309890	AT4G10500.1	27.451	102	71	1	60	161	44	142	2.87e-11	61.2
Msa1309890	AT5G05600.2	25.362	138	97	3	28	161	27	162	4.65e-11	60.5
Msa1309890	AT3G60290.1	29.412	102	70	1	60	161	52	151	5.48e-11	60.5
Msa1309890	AT1G17020.1	34.513	113	69	3	60	171	53	161	5.76e-11	60.5
Msa1309890	AT5G05600.1	25.362	138	97	3	28	161	27	162	6.95e-11	60.1
Msa1309890	AT5G24530.1	25.490	102	70	1	60	161	38	133	9.40e-11	59.7

Find 40 sgRNAs with CRISPR-Local

Find 43 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGGCTTTCTCATATTTATC+AGG	0.298572	8_4:-6360814	None:intergenic
TCTTCTGGCTTGAGAGTATC+AGG	0.348742	8_4:-6361159	None:intergenic
ATAATTGCTATTGTAAATAA+AGG	0.349980	8_4:-6361076	None:intergenic
CATACCACAGGAATCTCTTC+TGG	0.370423	8_4:-6361174	None:intergenic
ATTCTTGAGGATTTGAAAGA+TGG	0.382062	8_4:+6360985	Msa1309890:CDS
AAGGAAGCATGTGAAACATT+AGG	0.387874	8_4:+6360925	Msa1309890:CDS
TTGTTGATGAAGGACTTAAA+AGG	0.417465	8_4:+6360767	Msa1309890:CDS
AATAACATGGCTTGTGTTGT+TGG	0.428788	8_4:-6360833	None:intergenic
ATAGCCCACCAGCACTCAAT+TGG	0.433409	8_4:+6361106	Msa1309890:CDS
ACATTTGATGAAACAAAATC+TGG	0.447784	8_4:+6360733	Msa1309890:CDS
GTTCATTCATTATAGAATCA+AGG	0.461900	8_4:-6360705	None:intergenic
TTCTTGAGGATTTGAAAGAT+GGG	0.475634	8_4:+6360986	Msa1309890:CDS
TGACTTTCTCGACTATCCCT+TGG	0.479256	8_4:-6360903	None:intergenic
ATTTGAAAGATGGGGTGAAA+AGG	0.482766	8_4:+6360995	Msa1309890:CDS
TTCATTATAGAATCAAGGTT+AGG	0.490953	8_4:-6360700	None:intergenic
AAGAGATTCCTGTGGTATGC+AGG	0.491788	8_4:+6361178	Msa1309890:CDS
TCCCTCCAATTGAGTGCTGG+TGG	0.494894	8_4:-6361111	None:intergenic
GGTTGACAATGGAATATCTC+AGG	0.506900	8_4:-6360793	None:intergenic
CCCTCCAATTGAGTGCTGGT+GGG	0.511202	8_4:-6361110	None:intergenic
CATATTTATCAGGTTGACAA+TGG	0.524901	8_4:-6360804	None:intergenic
GCCCACCAGCACTCAATTGG+AGG	0.544222	8_4:+6361109	Msa1309890:CDS
AATCCTCAAGAATACTCAAA+GGG	0.550101	8_4:-6360975	None:intergenic
GAAACAAAATCTGGTGTGAA+AGG	0.554447	8_4:+6360742	Msa1309890:CDS
GTTAGGCATGGTTGTATCAG+TGG	0.565182	8_4:-6360683	None:intergenic
GTATCCCTCCAATTGAGTGC+TGG	0.565810	8_4:-6361114	None:intergenic
AATCCCTTTGAGTATTCTTG+AGG	0.567268	8_4:+6360972	Msa1309890:CDS
ATATCTGCAAGGTCTATGAC+AGG	0.576610	8_4:-6360856	None:intergenic
TACTAGTACCTGCATACCAC+AGG	0.580893	8_4:-6361186	None:intergenic
AAATCCTCAAGAATACTCAA+AGG	0.589563	8_4:-6360976	None:intergenic
TATAGAATCAAGGTTAGGCA+TGG	0.592736	8_4:-6360695	None:intergenic
TCTTGAGGATTTGAAAGATG+GGG	0.598044	8_4:+6360987	Msa1309890:CDS
CTTTATGATCAATATCTGCA+AGG	0.625347	8_4:-6360867	None:intergenic
GTGAAAGGACTTGTTGATGA+AGG	0.628163	8_4:+6360757	Msa1309890:CDS
CCCACCAGCACTCAATTGGA+GGG	0.629295	8_4:+6361110	Msa1309890:CDS
AAGATTCAAGCATTCACCAA+GGG	0.645226	8_4:+6360887	Msa1309890:CDS
TCTGGCTTGAGAGTATCAGG+TGG	0.651839	8_4:-6361156	None:intergenic
AGGGATAGTCGAGAAAGTCA+AGG	0.652795	8_4:+6360906	Msa1309890:CDS
AAAGATTCAAGCATTCACCA+AGG	0.683271	8_4:+6360886	Msa1309890:CDS
GGTCTATGACAGGAATAACA+TGG	0.684175	8_4:-6360846	None:intergenic
CAAGCCAGAAGAGATTCCTG+TGG	0.691640	8_4:+6361170	Msa1309890:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATAATTGCTATTGTAAATAA+AGG	-	chr8_4:6361079-6361098	None:intergenic	15.0%
!	TTCATTATAGAATCAAGGTT+AGG	-	chr8_4:6360703-6360722	None:intergenic	25.0%
!	GTTCATTCATTATAGAATCA+AGG	-	chr8_4:6360708-6360727	None:intergenic	25.0%
!	ACATTTGATGAAACAAAATC+TGG	+	chr8_4:6360733-6360752	Msa1309890:CDS	25.0%
!!!	TGAAACATTAGGTTTTTTTC+AGG	+	chr8_4:6360936-6360955	Msa1309890:CDS	25.0%
!!!	TTTTTTCAGGTTGTTAATCA+TGG	+	chr8_4:6360949-6360968	Msa1309890:CDS	25.0%
!	TTGTTGATGAAGGACTTAAA+AGG	+	chr8_4:6360767-6360786	Msa1309890:CDS	30.0%
!!	CATATTTATCAGGTTGACAA+TGG	-	chr8_4:6360807-6360826	None:intergenic	30.0%
!	TTGGCTTTCTCATATTTATC+AGG	-	chr8_4:6360817-6360836	None:intergenic	30.0%
	CTTTATGATCAATATCTGCA+AGG	-	chr8_4:6360870-6360889	None:intergenic	30.0%
	AATCCTCAAGAATACTCAAA+GGG	-	chr8_4:6360978-6360997	None:intergenic	30.0%
	AAATCCTCAAGAATACTCAA+AGG	-	chr8_4:6360979-6360998	None:intergenic	30.0%
	ATTCTTGAGGATTTGAAAGA+TGG	+	chr8_4:6360985-6361004	Msa1309890:CDS	30.0%
	TTCTTGAGGATTTGAAAGAT+GGG	+	chr8_4:6360986-6361005	Msa1309890:CDS	30.0%
	TATAGAATCAAGGTTAGGCA+TGG	-	chr8_4:6360698-6360717	None:intergenic	35.0%
	GAAACAAAATCTGGTGTGAA+AGG	+	chr8_4:6360742-6360761	Msa1309890:CDS	35.0%
!	AATAACATGGCTTGTGTTGT+TGG	-	chr8_4:6360836-6360855	None:intergenic	35.0%
	AAAGATTCAAGCATTCACCA+AGG	+	chr8_4:6360886-6360905	Msa1309890:CDS	35.0%
	AAGATTCAAGCATTCACCAA+GGG	+	chr8_4:6360887-6360906	Msa1309890:CDS	35.0%
!	AAGGAAGCATGTGAAACATT+AGG	+	chr8_4:6360925-6360944	Msa1309890:CDS	35.0%
	AATCCCTTTGAGTATTCTTG+AGG	+	chr8_4:6360972-6360991	Msa1309890:CDS	35.0%
	TCTTGAGGATTTGAAAGATG+GGG	+	chr8_4:6360987-6361006	Msa1309890:CDS	35.0%
	ATTTGAAAGATGGGGTGAAA+AGG	+	chr8_4:6360995-6361014	Msa1309890:CDS	35.0%
!!	GGTGAAAAGGTTTTATGAAC+TGG	+	chr8_4:6361008-6361027	Msa1309890:CDS	35.0%
!!	GGATACTTTTGCTTGTTACT+TGG	+	chr8_4:6361131-6361150	Msa1309890:CDS	35.0%
!!	GTGAAAGGACTTGTTGATGA+AGG	+	chr8_4:6360757-6360776	Msa1309890:CDS	40.0%
	GGTTGACAATGGAATATCTC+AGG	-	chr8_4:6360796-6360815	None:intergenic	40.0%
	GGTCTATGACAGGAATAACA+TGG	-	chr8_4:6360849-6360868	None:intergenic	40.0%
	ATATCTGCAAGGTCTATGAC+AGG	-	chr8_4:6360859-6360878	None:intergenic	40.0%
	GTTAGGCATGGTTGTATCAG+TGG	-	chr8_4:6360686-6360705	None:intergenic	45.0%
	TGACTTTCTCGACTATCCCT+TGG	-	chr8_4:6360906-6360925	None:intergenic	45.0%
	AGGGATAGTCGAGAAAGTCA+AGG	+	chr8_4:6360906-6360925	Msa1309890:CDS	45.0%
!!	TCTTCTGGCTTGAGAGTATC+AGG	-	chr8_4:6361162-6361181	None:intergenic	45.0%
	CATACCACAGGAATCTCTTC+TGG	-	chr8_4:6361177-6361196	None:intergenic	45.0%
	AAGAGATTCCTGTGGTATGC+AGG	+	chr8_4:6361178-6361197	Msa1309890:CDS	45.0%
	ATAGCCCACCAGCACTCAAT+TGG	+	chr8_4:6361106-6361125	Msa1309890:CDS	50.0%
	GTATCCCTCCAATTGAGTGC+TGG	-	chr8_4:6361117-6361136	None:intergenic	50.0%
!!	TCTGGCTTGAGAGTATCAGG+TGG	-	chr8_4:6361159-6361178	None:intergenic	50.0%
	CAAGCCAGAAGAGATTCCTG+TGG	+	chr8_4:6361170-6361189	Msa1309890:CDS	50.0%
!!	CCCTCCAATTGAGTGCTGGT+GGG	-	chr8_4:6361113-6361132	None:intergenic	55.0%
	CCCACCAGCACTCAATTGGA+GGG	+	chr8_4:6361110-6361129	Msa1309890:CDS	55.0%
!!	TCCCTCCAATTGAGTGCTGG+TGG	-	chr8_4:6361114-6361133	None:intergenic	55.0%
	GCCCACCAGCACTCAATTGG+AGG	+	chr8_4:6361109-6361128	Msa1309890:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	6360676	6361206	6360676	ID=Msa1309890;Name=Msa1309890
chr8_4	mRNA	6360676	6361206	6360676	ID=Msa1309890-mRNA-1;Parent=Msa1309890;Name=Msa1309890-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|176
chr8_4	exon	6360676	6361206	6360676	ID=Msa1309890-mRNA-1:exon:2194;Parent=Msa1309890-mRNA-1
chr8_4	CDS	6360676	6361206	6360676	ID=Msa1309890-mRNA-1:cds;Parent=Msa1309890-mRNA-1

Gene Sequence

>Msa1309890

ATGGGAACCACTGATACAACCATGCCTAACCTTGATTCTATAATGAATGAACGCAAAACATTTGATGAAACAAAATCTGGTGTGAAAGGACTTGTTGATGAAGGACTTAAAAGGATACCTGAGATATTCCATTGTCAACCTGATAAATATGAGAAAGCCAACAACACAAGCCATGTTATTCCTGTCATAGACCTTGCAGATATTGATCATAAAGATTCAAGCATTCACCAAGGGATAGTCGAGAAAGTCAAGGAAGCATGTGAAACATTAGGTTTTTTTCAGGTTGTTAATCATGGAATCCCTTTGAGTATTCTTGAGGATTTGAAAGATGGGGTGAAAAGGTTTTATGAACTGGACACAGAAGTCAAAAAAGATTTTTATACAAGAGATATGCAGAGATCCTTTATTTACAATAGCAATTATGATATTTATAGCCCACCAGCACTCAATTGGAGGGATACTTTTGCTTGTTACTTGGCTCCACCTGATACTCTCAAGCCAGAAGAGATTCCTGTGGTATGCAGGTACTAG

Protein sequence

>Msa1309890

MGTTDTTMPNLDSIMNERKTFDETKSGVKGLVDEGLKRIPEIFHCQPDKYEKANNTSHVIPVIDLADIDHKDSSIHQGIVEKVKEACETLGFFQVVNHGIPLSILEDLKDGVKRFYELDTEVKKDFYTRDMQRSFIYNSNYDIYSPPALNWRDTFACYLAPPDTLKPEEIPVVCRY*