AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0028950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028950 MtrunA17_Chr1g0185581 94.720 928 31 4 1 922 1 916 0.0 1701
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028950 AT1G03160.1 54.891 920 388 11 6 922 11 906 0.0 992
Msa0028950 AT1G03160.4 52.609 920 380 12 6 922 11 877 0.0 927
Msa0028950 AT1G03160.2 56.652 699 278 10 18 713 21 697 0.0 764
Msa0028950 AT1G03160.3 56.795 699 275 11 6 701 11 685 0.0 758

Find 223 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTGAAGCAGTAGAAAATT+TGG 0.183151 1_1:+54077896 Msa0028950:CDS
TACTTGGAGATTACGAAAAT+TGG 0.200895 1_1:+54076332 Msa0028950:CDS
CTCAGGACACATGAAGATTT+TGG 0.203758 1_1:-54078046 None:intergenic
GTTACTAGTTTGGAAAGTTT+TGG 0.211804 1_1:+54073493 Msa0028950:CDS
CTTATGGCTACCTCTAGTTT+TGG 0.219944 1_1:+54075492 Msa0028950:CDS
TGGGGTTGGGCTTTGGCCTT+AGG 0.221940 1_1:-54072872 None:intergenic
GATTGACGAGCCGTTCTTAT+TGG 0.233034 1_1:+54073923 Msa0028950:CDS
ACCACCACTTTGTTCATTAC+TGG 0.240361 1_1:-54073053 None:intergenic
CTCAAGCTCGTAAAAGCTAT+TGG 0.253669 1_1:-54075559 None:intergenic
AATCACAATTCCAACGGATT+TGG 0.263231 1_1:-54073026 None:intergenic
TCCTTCTGTGTCATCTGTTC+AGG 0.271301 1_1:+54076066 Msa0028950:CDS
CATACCTCACTTCCAGTTAA+AGG 0.273809 1_1:-54074945 None:intergenic
ATTAATGATTTCCTGGAATA+GGG 0.274023 1_1:-54078192 None:intergenic
GGAGAGGAGGGAGGGAGATA+TGG 0.274707 1_1:-54072653 None:intergenic
GCTTTGAGTTTACTTGCTTC+TGG 0.276623 1_1:+54073457 Msa0028950:CDS
TTCATGTGTCCTGAGTTCTT+TGG 0.283565 1_1:+54078054 Msa0028950:exon
ACTGTGATTAATGCGCTTCT+TGG 0.287328 1_1:+54074551 Msa0028950:CDS
TCATGTGTCCTGAGTTCTTT+GGG 0.289607 1_1:+54078055 Msa0028950:exon
CCTTGTATATTCTCCCTTGT+TGG 0.292272 1_1:-54076372 None:intergenic
GATTTGTTAAACTGGAAGAT+AGG 0.296689 1_1:+54073665 Msa0028950:CDS
TCTAGGTTGGGGTTGGGCTT+TGG 0.300498 1_1:-54072879 None:intergenic
GGAAGCAATGTCCTTCATTA+AGG 0.301311 1_1:+54075392 Msa0028950:CDS
AAAATCAGCACCTTCAGATT+TGG 0.302212 1_1:-54073311 None:intergenic
GGGGTGAAGAAGGGAGTAGG+AGG 0.308927 1_1:-54072751 None:intergenic
GAAATGACGAGAGGCATTAT+TGG 0.321253 1_1:-54072846 None:intergenic
CTCCACAACACGTGATTTAG+TGG 0.321750 1_1:-54075930 None:intergenic
TTGGAAGATCTTCTTGCTCT+TGG 0.322078 1_1:+54077554 Msa0028950:CDS
TGACTTACTTCTCTAAGAAT+TGG 0.324069 1_1:-54074707 None:intergenic
TTCAGTCAAATCCCTCTTCA+TGG 0.324417 1_1:-54077880 None:intergenic
TGGAAAATGAGAGCCTTTCT+TGG 0.326351 1_1:+54075784 Msa0028950:CDS
GATTAATGATTTCCTGGAAT+AGG 0.331902 1_1:-54078193 None:intergenic
TTATATGATTAATGATTTCC+TGG 0.345972 1_1:-54078199 None:intergenic
TCAGCTGATCGCCCTTTAAC+TGG 0.347584 1_1:+54074933 Msa0028950:CDS
GGAGAAACAGTTAATAGAAA+TGG 0.348551 1_1:+54073687 Msa0028950:CDS
CTTGTATATTCTCCCTTGTT+GGG 0.350679 1_1:-54076371 None:intergenic
TGCTCTTGAAGCAAAACTTA+TGG 0.354047 1_1:+54075476 Msa0028950:CDS
CCGCCGGGGAAGAGTGTTCT+AGG 0.356851 1_1:-54072896 None:intergenic
TCAGTCTCTGGTTCTCAATA+TGG 0.360347 1_1:+54075534 Msa0028950:CDS
GATACCTTTGTGAGAGTCAT+TGG 0.361581 1_1:+54077918 Msa0028950:CDS
TGAAGAATTACATTAGTTCC+AGG 0.368480 1_1:-54074849 None:intergenic
TCGATATGCCAAGCAGGATT+TGG 0.369694 1_1:+54075713 Msa0028950:CDS
GAGTGTTCTAGGTTGGGGTT+GGG 0.371217 1_1:-54072885 None:intergenic
AGGGGATCAAGCTGGCTATC+AGG 0.372164 1_1:+54076474 Msa0028950:CDS
AGGTGTGGATAGCGAGAGAA+GGG 0.383193 1_1:-54072785 None:intergenic
AGAAGGGGTTGTTATGGAAC+AGG 0.385359 1_1:-54072720 None:intergenic
GTTGCTAGGAATACAATGTT+AGG 0.385672 1_1:+54073214 Msa0028950:CDS
TGTGGGTGGATTTGTTAAAC+TGG 0.386432 1_1:+54073657 Msa0028950:CDS
TCAAGCTCGTAAAAGCTATT+GGG 0.388699 1_1:-54075558 None:intergenic
GCCTATTCTGCGCTTGATCT+TGG 0.389498 1_1:-54077950 None:intergenic
AGAGTGTTCTAGGTTGGGGT+TGG 0.393889 1_1:-54072886 None:intergenic
TGAAGAAGGGAGTAGGAGGG+AGG 0.396511 1_1:-54072747 None:intergenic
GGGGAAGAGTGTTCTAGGTT+GGG 0.396579 1_1:-54072891 None:intergenic
GAATGGAGAGTGCGGCGAAA+AGG 0.399526 1_1:-54072809 None:intergenic
AAGAACCACCAATTCGCTAT+TGG 0.400572 1_1:-54073239 None:intergenic
GGAATAAGAAGGGGTTGTTA+TGG 0.401637 1_1:-54072726 None:intergenic
GTGGTAGGGAGGGGTGAAGA+AGG 0.404564 1_1:-54072761 None:intergenic
AGAGTAGGGACTTTGAGTTC+AGG 0.404816 1_1:-54072929 None:intergenic
CTTTATGTTGTCCTTAATGA+AGG 0.405933 1_1:-54075403 None:intergenic
TAGCAAATATATTGACCATC+TGG 0.411722 1_1:-54074674 None:intergenic
ATGTCCTTGAACCCTATTCC+AGG 0.418990 1_1:+54078181 Msa0028950:three_prime_UTR
GGGGTTGGGCTTTGGCCTTA+GGG 0.422866 1_1:-54072871 None:intergenic
ATTCGCCACGTGTAAGAATC+TGG 0.429208 1_1:-54072973 None:intergenic
ATAGTAAACATTATTTCAAA+AGG 0.431471 1_1:+54078319 Msa0028950:three_prime_UTR
GAAAGAAGGGAGAGGAGGGA+GGG 0.431825 1_1:-54072661 None:intergenic
AGTAGGAGGGAGGAATAAGA+AGG 0.433949 1_1:-54072737 None:intergenic
CGAATTGGTGGTTCTTCCAT+TGG 0.436292 1_1:+54073246 Msa0028950:CDS
GCTCTTGGAATTTGTTCTGT+TGG 0.439392 1_1:+54077569 Msa0028950:CDS
TGAGTTGGAGAATGAGAGTA+GGG 0.440641 1_1:-54072943 None:intergenic
TTCGTAAATTATTTGATGGT+GGG 0.440847 1_1:+54073536 Msa0028950:CDS
AGAAAGAAGGGAGAGGAGGG+AGG 0.444007 1_1:-54072662 None:intergenic
CATATGAGTTGCTAAAGAAA+GGG 0.444121 1_1:+54076455 Msa0028950:CDS
GAGGTGTGGATAGCGAGAGA+AGG 0.445791 1_1:-54072786 None:intergenic
TTCAGGGCGTTTGTAACCGC+CGG 0.450932 1_1:-54072912 None:intergenic
GATAGAAAGAAGGGAGAGGA+GGG 0.451930 1_1:-54072665 None:intergenic
CTAGATGGGTCGACGATCGC+AGG 0.455498 1_1:+54075600 Msa0028950:CDS
CTTCGTAAATTATTTGATGG+TGG 0.456739 1_1:+54073535 Msa0028950:CDS
GCAGAGTATAACAGAGGTTG+TGG 0.456855 1_1:+54073639 Msa0028950:CDS
TTCTGAATTCTTGAGGTGGC+AGG 0.456958 1_1:-54076031 None:intergenic
TGATGGTGGGTTTGCAAATG+AGG 0.457041 1_1:+54073549 Msa0028950:CDS
GAGTAGGGACTTTGAGTTCA+GGG 0.457331 1_1:-54072928 None:intergenic
GAGTTTGTTTCCTCCAAGAA+AGG 0.457846 1_1:-54075797 None:intergenic
AACGAAGAATTGTCAGTCTC+TGG 0.458078 1_1:+54075522 Msa0028950:CDS
GGGGAATGAAGATAGAAAGA+AGG 0.458157 1_1:-54072675 None:intergenic
ATACCTCACTTCCAGTTAAA+GGG 0.459106 1_1:-54074944 None:intergenic
GTTAGGTTCCAATAGCGAAT+TGG 0.463663 1_1:+54073231 Msa0028950:CDS
TTGCTTCGTAAATTATTTGA+TGG 0.465054 1_1:+54073532 Msa0028950:CDS
TATAAAGAAAGCTGCACCTC+TGG 0.469112 1_1:+54073741 Msa0028950:CDS
ACATATGAGTTGCTAAAGAA+AGG 0.469855 1_1:+54076454 Msa0028950:CDS
CTTATATATGGTGGTGGTGG+TGG 0.469889 1_1:+54073334 Msa0028950:CDS
GGAGGGGTGAAGAAGGGAGT+AGG 0.471511 1_1:-54072754 None:intergenic
CTCTCGTCATTTCTTCCCTA+AGG 0.472450 1_1:+54072856 Msa0028950:CDS
AATGTGATCTCATTCGTTGT+TGG 0.473194 1_1:-54074602 None:intergenic
CGGGGAAGAGTGTTCTAGGT+TGG 0.473708 1_1:-54072892 None:intergenic
CTTGGTCAACTAGGAGTGGC+TGG 0.475698 1_1:+54077491 Msa0028950:CDS
AATGGAGAGTGCGGCGAAAA+GGG 0.479516 1_1:-54072808 None:intergenic
TTGAGTTGGAGAATGAGAGT+AGG 0.481221 1_1:-54072944 None:intergenic
TTGGAATTTGTTCTGTTGGC+GGG 0.483032 1_1:+54077573 Msa0028950:CDS
CGAATTTCCCATCTCGGAGG+CGG 0.487689 1_1:+54077799 Msa0028950:CDS
TGGTAGGGAGGGGTGAAGAA+GGG 0.487732 1_1:-54072760 None:intergenic
GGGAATGAAGATAGAAAGAA+GGG 0.487751 1_1:-54072674 None:intergenic
ATTTCCTGGAATAGGGTTCA+AGG 0.489984 1_1:-54078185 None:intergenic
GAGAAAGATATCTCAAAGAC+GGG 0.490849 1_1:+54074573 Msa0028950:CDS
ACCAAGATCAAGCGCAGAAT+AGG 0.491215 1_1:+54077949 Msa0028950:CDS
AGAGGCATTATTGGAAGTGA+TGG 0.491985 1_1:-54072837 None:intergenic
GGGTGAAGAAGGGAGTAGGA+GGG 0.495213 1_1:-54072750 None:intergenic
TCATTCTGTTATTGATGCAA+TGG 0.495631 1_1:+54078083 Msa0028950:three_prime_UTR
ATCACACGCCGCCTCCGAGA+TGG 0.500627 1_1:-54077807 None:intergenic
TTAGGGACTCTTGGTCAACT+AGG 0.502895 1_1:+54077482 Msa0028950:CDS
TTCTGCGCTTGATCTTGGTA+AGG 0.503435 1_1:-54077945 None:intergenic
CATAAAGAGATTGTTGAAAA+CGG 0.503693 1_1:+54075419 Msa0028950:CDS
TTTCTTATATATGGTGGTGG+TGG 0.504919 1_1:+54073331 Msa0028950:CDS
CTTAAACTTGAAACACCTGT+TGG 0.505262 1_1:+54075639 Msa0028950:CDS
GATTGGATACAGAAAATACT+TGG 0.505510 1_1:+54076316 Msa0028950:intron
GGGAAGAGTGTTCTAGGTTG+GGG 0.505759 1_1:-54072890 None:intergenic
CTTGGAATTTGTTCTGTTGG+CGG 0.506769 1_1:+54077572 Msa0028950:CDS
AGTCTGTCTGCAATTCCAAC+AGG 0.507009 1_1:-54075654 None:intergenic
CTATTTCGAATTTCCCATCT+CGG 0.507858 1_1:+54077793 Msa0028950:CDS
TCAGGGCGTTTGTAACCGCC+GGG 0.508845 1_1:-54072911 None:intergenic
TTACTTGCTTCTGGTGCTAG+TGG 0.511768 1_1:+54073466 Msa0028950:CDS
TTCTTCGTTATTCACAGCAA+TGG 0.512194 1_1:+54075075 Msa0028950:CDS
ATTTGTTAAACTGGAAGATA+GGG 0.520690 1_1:+54073666 Msa0028950:CDS
GAATCTGGTCGGAGTTGAGT+TGG 0.524814 1_1:-54072958 None:intergenic
AGATAGAAAGAAGGGAGAGG+AGG 0.526108 1_1:-54072666 None:intergenic
TACCATGGATTTGATTTGAA+GGG 0.526464 1_1:-54072696 None:intergenic
GTACCATGGATTTGATTTGA+AGG 0.530377 1_1:-54072697 None:intergenic
GTGTGGATAGCGAGAGAAGG+GGG 0.530632 1_1:-54072783 None:intergenic
AAAATGAGAGCCTTTCTTGG+AGG 0.531067 1_1:+54075787 Msa0028950:CDS
GTAGGAGGGAGGAATAAGAA+GGG 0.531691 1_1:-54072736 None:intergenic
TGGGTCGACGATCGCAGGGA+TGG 0.531906 1_1:+54075605 Msa0028950:CDS
AGGTTCCAATAGCGAATTGG+TGG 0.531924 1_1:+54073234 Msa0028950:CDS
TCACACGCCGCCTCCGAGAT+GGG 0.532753 1_1:-54077806 None:intergenic
TATTGCAGCCAAATCCTGCT+TGG 0.535558 1_1:-54075721 None:intergenic
CAGAGTATAACAGAGGTTGT+GGG 0.536041 1_1:+54073640 Msa0028950:CDS
TTCTTCAAGTTCATTCGCCA+AGG 0.537920 1_1:-54077856 None:intergenic
TGGAAGTGATGGGAGAGGAA+TGG 0.537999 1_1:-54072826 None:intergenic
AGGAGGGAGGGAGATATGGA+TGG 0.538742 1_1:-54072649 None:intergenic
AAATTAGTCAATGAGAGTAA+TGG 0.541323 1_1:+54073613 Msa0028950:CDS
AAAGCAGTTTCCAAATCCGT+TGG 0.544631 1_1:+54073016 Msa0028950:CDS
AACAGTAGGAAGACCTTGAT+CGG 0.550869 1_1:-54073191 None:intergenic
CCAACAAGGGAGAATATACA+AGG 0.551313 1_1:+54076372 Msa0028950:CDS
GTCTTCCTACTGTTGTTGCT+AGG 0.559275 1_1:+54073200 Msa0028950:CDS
TGAAATATCCCAAAGAACTC+AGG 0.564402 1_1:-54078063 None:intergenic
CTAAAGAAAGGGGATCAAGC+TGG 0.564620 1_1:+54076466 Msa0028950:CDS
ATCCACTAAATCACGTGTTG+TGG 0.567456 1_1:+54075928 Msa0028950:CDS
AGGCCATGGCAAATTAAAAG+TGG 0.567870 1_1:-54078113 None:intergenic
GAGGCGGCGTGTGATAGATA+AGG 0.570406 1_1:+54077815 Msa0028950:CDS
TATGTCATTCTGAATTCTTG+AGG 0.570562 1_1:-54076038 None:intergenic
TACTTCTCTAAGAATTGGAG+CGG 0.570606 1_1:-54074702 None:intergenic
GCCGTTCTTATTGGTCATAG+TGG 0.574438 1_1:+54073932 Msa0028950:CDS
TCTTGCTTAAAGAGAGGCCA+TGG 0.574910 1_1:-54078127 None:intergenic
GGGAGGGAGATATGGATGGA+TGG 0.575219 1_1:-54072645 None:intergenic
GTGTGATAGATAAGGTGAAA+AGG 0.575343 1_1:+54077823 Msa0028950:CDS
ACTTCTCTAAGAATTGGAGC+GGG 0.575454 1_1:-54074701 None:intergenic
TGAGCAAGAAGTTCGTGAGA+TGG 0.577980 1_1:+54076537 Msa0028950:CDS
ATCTGTACTGCAAACCACAT+TGG 0.578353 1_1:+54077535 Msa0028950:CDS
TGAAGATAGAAAGAAGGGAG+AGG 0.581729 1_1:-54072669 None:intergenic
GAGGAAACAAACTCTATCCA+TGG 0.582861 1_1:+54075806 Msa0028950:CDS
GGTGTGGATAGCGAGAGAAG+GGG 0.584107 1_1:-54072784 None:intergenic
GAGGCATTATTGGAAGTGAT+GGG 0.584359 1_1:-54072836 None:intergenic
ATGACAATTGTTGATACACC+TGG 0.584916 1_1:+54074831 Msa0028950:CDS
GAAAAGGAAAGCAGATACCT+TGG 0.585138 1_1:+54077839 Msa0028950:CDS
CTCTAAGAATTGGAGCGGGA+AGG 0.585703 1_1:-54074697 None:intergenic
GGAGAAAGATATCTCAAAGA+CGG 0.586536 1_1:+54074572 Msa0028950:CDS
GTTAATAGAAATGGAGAGGT+CGG 0.587179 1_1:+54073696 Msa0028950:CDS
TGTTATGGAACAGGGTACCA+TGG 0.587563 1_1:-54072711 None:intergenic
TGGCCTCTCTTTAAGCAAGA+AGG 0.588310 1_1:+54078130 Msa0028950:three_prime_UTR
AACTTGAAGAAGCCATGAAG+AGG 0.589676 1_1:+54077868 Msa0028950:CDS
ATCGGAGAGTAAAACGCCAC+TGG 0.590084 1_1:-54073173 None:intergenic
CAACCTAGAACACTCTTCCC+CGG 0.590957 1_1:+54072893 Msa0028950:CDS
ACCATGGATTTGATTTGAAG+GGG 0.592880 1_1:-54072695 None:intergenic
GACTCTTGGTCAACTAGGAG+TGG 0.595185 1_1:+54077487 Msa0028950:CDS
AGACTATCGATATGCCAAGC+AGG 0.596164 1_1:+54075707 Msa0028950:CDS
GTTGAGTTTCCCAAAACTAG+AGG 0.598083 1_1:-54075502 None:intergenic
CATGGCAAATTAAAAGTGGA+TGG 0.598743 1_1:-54078109 None:intergenic
GATGGATGACTCTCCGTCAG+TGG 0.599652 1_1:-54072627 None:intergenic
ACTTGAAGAAGCCATGAAGA+GGG 0.600088 1_1:+54077869 Msa0028950:CDS
AACAGTTAATAGAAATGGAG+AGG 0.600267 1_1:+54073692 Msa0028950:CDS
AACAACTCAGATTCCACTGA+CGG 0.605575 1_1:+54072614 None:intergenic
TAGGAGGGAGGAATAAGAAG+GGG 0.608955 1_1:-54072735 None:intergenic
TAGATGGGTCGACGATCGCA+GGG 0.610773 1_1:+54075601 Msa0028950:CDS
TCGCAGGGATGGATAGAATG+AGG 0.611057 1_1:+54075616 Msa0028950:CDS
TGTACAAATCTAGCGACCAA+TGG 0.613025 1_1:-54073262 None:intergenic
GCGCCTTCTTGCTTAAAGAG+AGG 0.614736 1_1:-54078133 None:intergenic
GTGCGGCGAAAAGGGAGGTG+TGG 0.619577 1_1:-54072800 None:intergenic
CCATGGATTTGATTTGAAGG+GGG 0.619733 1_1:-54072694 None:intergenic
GTCATTCTGAATTCTTGAGG+TGG 0.619878 1_1:-54076035 None:intergenic
ATATGAGTTGCTAAAGAAAG+GGG 0.621951 1_1:+54076456 Msa0028950:CDS
AGAGCAGATCGAGCAGACAC+AGG 0.622073 1_1:-54075459 None:intergenic
ACCACTATGACCAATAAGAA+CGG 0.622805 1_1:-54073933 None:intergenic
ATTATTGGAAGTGATGGGAG+AGG 0.626448 1_1:-54072831 None:intergenic
GGTTAGAATCACAATTCCAA+CGG 0.628863 1_1:-54073032 None:intergenic
GCTGCCGCTGCTGTTACCAG+TGG 0.632649 1_1:+54073157 Msa0028950:CDS
ACAGCAATGGAAGAAGAAAG+TGG 0.636739 1_1:+54075088 Msa0028950:CDS
CGCTGTGAAAGGTATCCAGA+TGG 0.637277 1_1:+54074659 Msa0028950:CDS
GGAGAGTGCGGCGAAAAGGG+AGG 0.644910 1_1:-54072805 None:intergenic
ACCTGAACAGATGACACAGA+AGG 0.647984 1_1:-54076067 None:intergenic
GTAAATGCATCCAAATCTGA+AGG 0.648586 1_1:+54073301 Msa0028950:CDS
GTATTCCTAGCAACAACAGT+AGG 0.653665 1_1:-54073205 None:intergenic
GCCACGTGTAAGAATCTGGT+CGG 0.655214 1_1:-54072969 None:intergenic
GAGACAACAGCGTCTTACAG+AGG 0.659308 1_1:+54074872 Msa0028950:CDS
TGCAAATGAGGAGAGAACAC+TGG 0.663495 1_1:+54073561 Msa0028950:CDS
TTTATCGATCAAGTCTAGTG+CGG 0.664777 1_1:-54072996 None:intergenic
ACCAGTAATGAACAAAGTGG+TGG 0.666256 1_1:+54073052 Msa0028950:CDS
GAGAAACTTGTCATACGATG+AGG 0.666435 1_1:+54073435 Msa0028950:CDS
AGTATAACAGAGGTTGTGGG+TGG 0.666437 1_1:+54073643 Msa0028950:CDS
GTGTAACTTGATATATGCAA+TGG 0.666867 1_1:+54078237 Msa0028950:three_prime_UTR
CAAGTTTCTCCCCACAAACG+AGG 0.670479 1_1:-54073422 None:intergenic
TTTCGAATTTCCCATCTCGG+AGG 0.670630 1_1:+54077796 Msa0028950:CDS
AACGCCACTGGTAACAGCAG+CGG 0.672510 1_1:-54073161 None:intergenic
TGGGAGAGGAATGGAGAGTG+CGG 0.678631 1_1:-54072817 None:intergenic
TGGTTTGCAGAGTATAACAG+AGG 0.684199 1_1:+54073633 Msa0028950:CDS
TCGCCCTTTAACTGGAAGTG+AGG 0.689500 1_1:+54074941 Msa0028950:CDS
CTAACCAGTAATGAACAAAG+TGG 0.689690 1_1:+54073049 Msa0028950:CDS
GAAGGGGTTGTTATGGAACA+GGG 0.689780 1_1:-54072719 None:intergenic
AGCAAGAAGATCTTCCAATG+TGG 0.693565 1_1:-54077549 None:intergenic
CATTTATCAGAATAATCATG+AGG 0.697867 1_1:+54075133 Msa0028950:CDS
CTTAGGGAAGAAATGACGAG+AGG 0.707301 1_1:-54072855 None:intergenic
TCCGACCAGATTCTTACACG+TGG 0.712840 1_1:+54072968 Msa0028950:CDS
TTTGCCAATGACTCTCACAA+AGG 0.714611 1_1:-54077922 None:intergenic
AAAAGAAGTAAGTCTGCACG+AGG 0.721303 1_1:-54074903 None:intergenic
CAGGGCGTTTGTAACCGCCG+GGG 0.722210 1_1:-54072910 None:intergenic
AGAAAGATATCTCAAAGACG+GGG 0.744416 1_1:+54074574 Msa0028950:CDS
CCTAGAACACTCTTCCCCGG+CGG 0.765548 1_1:+54072896 Msa0028950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTACATTATTTTACA+AGG - chr1_1:54076576-54076595 None:intergenic 15.0%
!!! TTTTTATGCTATTTTACTTA+CGG - chr1_1:54076936-54076955 None:intergenic 15.0%
!! ATAGTAATGAAATAATATCT+AGG + chr1_1:54077698-54077717 Msa0028950:intron 15.0%
!! ATAGTAAACATTATTTCAAA+AGG + chr1_1:54078319-54078338 Msa0028950:three_prime_UTR 15.0%
!! GTTAAAACTAGTTAACAAAT+AGG + chr1_1:54074050-54074069 Msa0028950:intron 20.0%
!! AAAGATAATAAATAGTGATG+TGG - chr1_1:54074404-54074423 None:intergenic 20.0%
!!! TTAGTCCTTTTTTTTTAGTA+TGG + chr1_1:54074969-54074988 Msa0028950:intron 20.0%
!!! TAGTCCTTTTTTTTTAGTAT+GGG + chr1_1:54074970-54074989 Msa0028950:intron 20.0%
!!! CATGTTTTATTTTCTTTTTC+AGG + chr1_1:54075046-54075065 Msa0028950:intron 20.0%
!! TTATGTTTCATGATTCATAT+TGG + chr1_1:54075160-54075179 Msa0028950:intron 20.0%
!! TATGTTTCATGATTCATATT+GGG + chr1_1:54075161-54075180 Msa0028950:intron 20.0%
!! AATATTTGTTTAGTGTACAA+TGG - chr1_1:54075270-54075289 None:intergenic 20.0%
!! ATTGTACACTAAACAAATAT+TGG + chr1_1:54075269-54075288 Msa0028950:intron 20.0%
!! TTGTACACTAAACAAATATT+GGG + chr1_1:54075270-54075289 Msa0028950:intron 20.0%
!!! TTTTTATATAGCTTTCTAGA+TGG + chr1_1:54075585-54075604 Msa0028950:CDS 20.0%
!!! TTTTATATAGCTTTCTAGAT+GGG + chr1_1:54075586-54075605 Msa0028950:CDS 20.0%
!!! AAATGATTTTGCATTGAATA+TGG + chr1_1:54075764-54075783 Msa0028950:CDS 20.0%
!! TTAAGAACATACTAATTAAG+AGG - chr1_1:54075880-54075899 None:intergenic 20.0%
!! ACATTTAAGCAAAACATAAA+TGG - chr1_1:54076288-54076307 None:intergenic 20.0%
!!! ATGTTTTGCTTAAATGTTTT+TGG + chr1_1:54076291-54076310 Msa0028950:intron 20.0%
!!! TTTTATGCTATTTTACTTAC+GGG - chr1_1:54076935-54076954 None:intergenic 20.0%
!! GACAATATTCATTCATATAT+GGG - chr1_1:54077339-54077358 None:intergenic 20.0%
!! AGACAATATTCATTCATATA+TGG - chr1_1:54077340-54077359 None:intergenic 20.0%
!! ATTTCATTACTATCTCTTAA+AGG - chr1_1:54077691-54077710 None:intergenic 20.0%
!! TTATATGATTAATGATTTCC+TGG - chr1_1:54078202-54078221 None:intergenic 20.0%
!!! CAAAAGGTTAATTAAGTTTT+TGG + chr1_1:54078335-54078354 Msa0028950:three_prime_UTR 20.0%
!! GAACTTTTAAATCAGGAAAT+TGG + chr1_1:54073364-54073383 Msa0028950:CDS 25.0%
!!! TTACTAGTTTGGAAAGTTTT+GGG + chr1_1:54073494-54073513 Msa0028950:CDS 25.0%
! TTGCTTCGTAAATTATTTGA+TGG + chr1_1:54073532-54073551 Msa0028950:CDS 25.0%
!! TTCGTAAATTATTTGATGGT+GGG + chr1_1:54073536-54073555 Msa0028950:CDS 25.0%
! AAATTAGTCAATGAGAGTAA+TGG + chr1_1:54073613-54073632 Msa0028950:CDS 25.0%
!! ATTTGTTAAACTGGAAGATA+GGG + chr1_1:54073666-54073685 Msa0028950:CDS 25.0%
!!! GATCTTTTAACTAAAACAGT+TGG + chr1_1:54073765-54073784 Msa0028950:intron 25.0%
! ACACAAAGTAAACAATATAC+TGG - chr1_1:54073838-54073857 None:intergenic 25.0%
! TTGTTTACTTTGTGTTGAAT+TGG + chr1_1:54073843-54073862 Msa0028950:intron 25.0%
! TTCCTATATCGTTATACTTA+TGG + chr1_1:54074287-54074306 Msa0028950:intron 25.0%
! TTCCATAAGTATAACGATAT+AGG - chr1_1:54074292-54074311 None:intergenic 25.0%
!!! TTAGTTTTCTCCTTATGTTT+TGG + chr1_1:54074738-54074757 Msa0028950:intron 25.0%
! CAAACAGAAATTGTAATCAA+GGG - chr1_1:54074768-54074787 None:intergenic 25.0%
!!! AGTCCTTTTTTTTTAGTATG+GGG + chr1_1:54074971-54074990 Msa0028950:intron 25.0%
! CATTTATCAGAATAATCATG+AGG + chr1_1:54075133-54075152 Msa0028950:CDS 25.0%
! AAGTAAAGACAACAACATTA+GGG - chr1_1:54075301-54075320 None:intergenic 25.0%
!!! TTGTTCTTTTGTACTGATAT+AGG + chr1_1:54075319-54075338 Msa0028950:intron 25.0%
! ATGTATAACGTAAAACTACT+TGG - chr1_1:54075351-54075370 None:intergenic 25.0%
! CATAAAGAGATTGTTGAAAA+CGG + chr1_1:54075419-54075438 Msa0028950:CDS 25.0%
!! GTTCATAATTTTTGAATGTC+AGG + chr1_1:54075842-54075861 Msa0028950:intron 25.0%
! AGTATGTTCTTAAATTGCAA+TGG + chr1_1:54075887-54075906 Msa0028950:intron 25.0%
!! GTTGTATCATATGTTTTCAA+AGG + chr1_1:54075992-54076011 Msa0028950:CDS 25.0%
! TGATTTATTTGACCATAAAC+TGG + chr1_1:54076169-54076188 Msa0028950:intron 25.0%
! TTTAATCTCGCATTAGTATT+TGG - chr1_1:54076237-54076256 None:intergenic 25.0%
!!! CTTAAATGTTTTTGGTTGAT+TGG + chr1_1:54076299-54076318 Msa0028950:intron 25.0%
!! ACTATTTTCATGAATCAATG+AGG - chr1_1:54076419-54076438 None:intergenic 25.0%
!! TTCTCATGATTTGAAATCAA+AGG + chr1_1:54076679-54076698 Msa0028950:intron 25.0%
!!! GTTTTATACAAGTTTGGTTT+CGG - chr1_1:54076845-54076864 None:intergenic 25.0%
! TATATGTGTAACAAACTTTC+CGG + chr1_1:54076872-54076891 Msa0028950:intron 25.0%
!! AAACTTCCATTTAAAATGTC+CGG - chr1_1:54076894-54076913 None:intergenic 25.0%
!! TTAGCATTTAGAATGATTTC+TGG + chr1_1:54077010-54077029 Msa0028950:intron 25.0%
!! ATTGATCATTCATCATTTTG+AGG - chr1_1:54077068-54077087 None:intergenic 25.0%
! ATGATGAATGATCAATCAAT+AGG + chr1_1:54077072-54077091 Msa0028950:intron 25.0%
!! ATAGGTTTGTTTAAAAGTTG+AGG + chr1_1:54077090-54077109 Msa0028950:intron 25.0%
! AAATATTATATTTACCGCTG+AGG - chr1_1:54077370-54077389 None:intergenic 25.0%
! ATTAATGATTTCCTGGAATA+GGG - chr1_1:54078195-54078214 None:intergenic 25.0%
!! TACCATGGATTTGATTTGAA+GGG - chr1_1:54072699-54072718 None:intergenic 30.0%
!!! GGTGCTGATTTTCTTATATA+TGG + chr1_1:54073322-54073341 Msa0028950:CDS 30.0%
!! GCTGATTTTCTTATATATGG+TGG + chr1_1:54073325-54073344 Msa0028950:CDS 30.0%
! GATTTTCTTATATATGGTGG+TGG + chr1_1:54073328-54073347 Msa0028950:CDS 30.0%
! CGATATGGAACTTTTAAATC+AGG + chr1_1:54073357-54073376 Msa0028950:CDS 30.0%
!!! TAGTGGTTTTGTTACTAGTT+TGG + chr1_1:54073483-54073502 Msa0028950:CDS 30.0%
!! GTTACTAGTTTGGAAAGTTT+TGG + chr1_1:54073493-54073512 Msa0028950:CDS 30.0%
CTTCGTAAATTATTTGATGG+TGG + chr1_1:54073535-54073554 Msa0028950:CDS 30.0%
!! GATTTGTTAAACTGGAAGAT+AGG + chr1_1:54073665-54073684 Msa0028950:CDS 30.0%
GGAGAAACAGTTAATAGAAA+TGG + chr1_1:54073687-54073706 Msa0028950:CDS 30.0%
AACAGTTAATAGAAATGGAG+AGG + chr1_1:54073692-54073711 Msa0028950:CDS 30.0%
TTTAGTTAAAAGATCACCAG+AGG - chr1_1:54073760-54073779 None:intergenic 30.0%
ACTTTGTGTTGAATTGGAAT+TGG + chr1_1:54073849-54073868 Msa0028950:intron 30.0%
! AATTGGTTTCAAATGACAGA+TGG + chr1_1:54073866-54073885 Msa0028950:intron 30.0%
!! TTTACTAGAGTGTTGATTCA+TGG + chr1_1:54074152-54074171 Msa0028950:intron 30.0%
TCTGAAGAATGCAATATGTT+GGG + chr1_1:54074245-54074264 Msa0028950:intron 30.0%
ATTTATTTGACTCTATTGCC+AGG + chr1_1:54074505-54074524 Msa0028950:intron 30.0%
TTTATTTGACTCTATTGCCA+GGG + chr1_1:54074506-54074525 Msa0028950:intron 30.0%
!!! AGCGTTGTTTTTCAATATCT+AGG - chr1_1:54074643-54074662 None:intergenic 30.0%
TAGCAAATATATTGACCATC+TGG - chr1_1:54074677-54074696 None:intergenic 30.0%
! TGACTTACTTCTCTAAGAAT+TGG - chr1_1:54074710-54074729 None:intergenic 30.0%
GCAAACAGAAATTGTAATCA+AGG - chr1_1:54074769-54074788 None:intergenic 30.0%
CAATTTCTGTTTGCAATTAG+TGG + chr1_1:54074775-54074794 Msa0028950:intron 30.0%
! AATTGTCATCTGTTTTCAGA+AGG - chr1_1:54074820-54074839 None:intergenic 30.0%
TGAAGAATTACATTAGTTCC+AGG - chr1_1:54074852-54074871 None:intergenic 30.0%
ATGCCCCATACTAAAAAAAA+AGG - chr1_1:54074977-54074996 None:intergenic 30.0%
ATTTGTTTAGTGTACAATGG+AGG - chr1_1:54075267-54075286 None:intergenic 30.0%
CAAGTAAAGACAACAACATT+AGG - chr1_1:54075302-54075321 None:intergenic 30.0%
CTTTATGTTGTCCTTAATGA+AGG - chr1_1:54075406-54075425 None:intergenic 30.0%
TATGTCATTCTGAATTCTTG+AGG - chr1_1:54076041-54076060 None:intergenic 30.0%
GATTGGATACAGAAAATACT+TGG + chr1_1:54076316-54076335 Msa0028950:intron 30.0%
TACTTGGAGATTACGAAAAT+TGG + chr1_1:54076332-54076351 Msa0028950:CDS 30.0%
ACATATGAGTTGCTAAAGAA+AGG + chr1_1:54076454-54076473 Msa0028950:CDS 30.0%
CATATGAGTTGCTAAAGAAA+GGG + chr1_1:54076455-54076474 Msa0028950:CDS 30.0%
ATATGAGTTGCTAAAGAAAG+GGG + chr1_1:54076456-54076475 Msa0028950:CDS 30.0%
TCAGTTGAACAACTAACTAA+TGG + chr1_1:54076754-54076773 Msa0028950:intron 30.0%
TGAACAACTAACTAATGGAA+TGG + chr1_1:54076759-54076778 Msa0028950:intron 30.0%
AACCAAACTTGTATAAAACC+AGG + chr1_1:54076846-54076865 Msa0028950:intron 30.0%
ACCAAACTTGTATAAAACCA+GGG + chr1_1:54076847-54076866 Msa0028950:intron 30.0%
! AACTTTCCGGACATTTTAAA+TGG + chr1_1:54076885-54076904 Msa0028950:intron 30.0%
! ATGTCTAAGATATTGCCTTA+AGG + chr1_1:54076987-54077006 Msa0028950:intron 30.0%
CATTCTAAATGCTAACCTTA+AGG - chr1_1:54077005-54077024 None:intergenic 30.0%
ATAACCAGTGTGATTTATTC+AGG + chr1_1:54077120-54077139 Msa0028950:intron 30.0%
! TTCCCTATATTAACGTTTTC+TGG + chr1_1:54077205-54077224 Msa0028950:intron 30.0%
TGCCAGAAAACGTTAATATA+GGG - chr1_1:54077210-54077229 None:intergenic 30.0%
TTGTTATATAGTAGCTTCCA+GGG - chr1_1:54077234-54077253 None:intergenic 30.0%
ACTTAATTGTTGATCAGACA+AGG - chr1_1:54077268-54077287 None:intergenic 30.0%
AGAATTGTTTAGTGACATAG+TGG - chr1_1:54077432-54077451 None:intergenic 30.0%
! TTCCTTCTGTGTAGATTTTA+GGG + chr1_1:54077465-54077484 Msa0028950:intron 30.0%
! TGCATTTTCAAATACAACCT+GGG - chr1_1:54077634-54077653 None:intergenic 30.0%
! ATGCATTTTCAAATACAACC+TGG - chr1_1:54077635-54077654 None:intergenic 30.0%
TTCACTTCTTGCTAATATCT+GGG + chr1_1:54077742-54077761 Msa0028950:intron 30.0%
TCATTCTGTTATTGATGCAA+TGG + chr1_1:54078083-54078102 Msa0028950:three_prime_UTR 30.0%
GATTAATGATTTCCTGGAAT+AGG - chr1_1:54078196-54078215 None:intergenic 30.0%
GTGTAACTTGATATATGCAA+TGG + chr1_1:54078237-54078256 Msa0028950:three_prime_UTR 30.0%
GGGAATGAAGATAGAAAGAA+GGG - chr1_1:54072677-54072696 None:intergenic 35.0%
!! ACCATGGATTTGATTTGAAG+GGG - chr1_1:54072698-54072717 None:intergenic 35.0%
!! GTACCATGGATTTGATTTGA+AGG - chr1_1:54072700-54072719 None:intergenic 35.0%
TTTATCGATCAAGTCTAGTG+CGG - chr1_1:54072999-54073018 None:intergenic 35.0%
! AATCACAATTCCAACGGATT+TGG - chr1_1:54073029-54073048 None:intergenic 35.0%
GGTTAGAATCACAATTCCAA+CGG - chr1_1:54073035-54073054 None:intergenic 35.0%
CTAACCAGTAATGAACAAAG+TGG + chr1_1:54073049-54073068 Msa0028950:CDS 35.0%
GTTGCTAGGAATACAATGTT+AGG + chr1_1:54073214-54073233 Msa0028950:CDS 35.0%
GTAAATGCATCCAAATCTGA+AGG + chr1_1:54073301-54073320 Msa0028950:CDS 35.0%
AAAATCAGCACCTTCAGATT+TGG - chr1_1:54073314-54073333 None:intergenic 35.0%
!! TTTCTTATATATGGTGGTGG+TGG + chr1_1:54073331-54073350 Msa0028950:CDS 35.0%
GTTAATAGAAATGGAGAGGT+CGG + chr1_1:54073696-54073715 Msa0028950:CDS 35.0%
ACCACTATGACCAATAAGAA+CGG - chr1_1:54073936-54073955 None:intergenic 35.0%
TGCTGAATCTCAACAAATTC+TGG + chr1_1:54073963-54073982 Msa0028950:intron 35.0%
CTAATACCAATGTATATCCC+AGG - chr1_1:54073991-54074010 None:intergenic 35.0%
CAAATAGGTGCTCTTTATTG+TGG + chr1_1:54074065-54074084 Msa0028950:intron 35.0%
GTATACTTACAGTGAGTAGT+TGG + chr1_1:54074174-54074193 Msa0028950:intron 35.0%
! CTCTGAAGAATGCAATATGT+TGG + chr1_1:54074244-54074263 Msa0028950:intron 35.0%
!! ATGCAATATGTTGGGTTAGT+TGG + chr1_1:54074253-54074272 Msa0028950:intron 35.0%
!! TGCAATATGTTGGGTTAGTT+GGG + chr1_1:54074254-54074273 Msa0028950:intron 35.0%
! ATGAGTATTGTCAGCTATTG+CGG - chr1_1:54074326-54074345 None:intergenic 35.0%
TAGCTGACAATACTCATCAT+AGG + chr1_1:54074329-54074348 Msa0028950:intron 35.0%
AACTTTCCAACTTTCACCTT+AGG + chr1_1:54074352-54074371 Msa0028950:intron 35.0%
TCAGATAACTACTCAACCTA+AGG - chr1_1:54074371-54074390 None:intergenic 35.0%
TTTCTGTCTCACAAAGCAAT+TGG + chr1_1:54074422-54074441 Msa0028950:intron 35.0%
TTCTGTCTCACAAAGCAATT+GGG + chr1_1:54074423-54074442 Msa0028950:intron 35.0%
TTATTTGACTCTATTGCCAG+GGG + chr1_1:54074507-54074526 Msa0028950:intron 35.0%
GGAGAAAGATATCTCAAAGA+CGG + chr1_1:54074572-54074591 Msa0028950:CDS 35.0%
GAGAAAGATATCTCAAAGAC+GGG + chr1_1:54074573-54074592 Msa0028950:CDS 35.0%
AGAAAGATATCTCAAAGACG+GGG + chr1_1:54074574-54074593 Msa0028950:CDS 35.0%
AATGTGATCTCATTCGTTGT+TGG - chr1_1:54074605-54074624 None:intergenic 35.0%
TTGAAAAACAACGCTGTGAA+AGG + chr1_1:54074648-54074667 Msa0028950:CDS 35.0%
! TACTTCTCTAAGAATTGGAG+CGG - chr1_1:54074705-54074724 None:intergenic 35.0%
ATGACAATTGTTGATACACC+TGG + chr1_1:54074831-54074850 Msa0028950:CDS 35.0%
ATACCTCACTTCCAGTTAAA+GGG - chr1_1:54074947-54074966 None:intergenic 35.0%
ATAAAACATGTCATACCCCT+GGG - chr1_1:54075036-54075055 None:intergenic 35.0%
AATAAAACATGTCATACCCC+TGG - chr1_1:54075037-54075056 None:intergenic 35.0%
TTCTTCGTTATTCACAGCAA+TGG + chr1_1:54075075-54075094 Msa0028950:CDS 35.0%
TAGATCAATCCTAGAAGCTT+CGG - chr1_1:54075192-54075211 None:intergenic 35.0%
TGCTCTTGAAGCAAAACTTA+TGG + chr1_1:54075476-54075495 Msa0028950:CDS 35.0%
!!! TTATGGCTACCTCTAGTTTT+GGG + chr1_1:54075493-54075512 Msa0028950:CDS 35.0%
TCAAGCTCGTAAAAGCTATT+GGG - chr1_1:54075561-54075580 None:intergenic 35.0%
CTTAAACTTGAAACACCTGT+TGG + chr1_1:54075639-54075658 Msa0028950:CDS 35.0%
GAACTTCTTGTAACATACCA+TGG - chr1_1:54075826-54075845 None:intergenic 35.0%
!!! CATCTGTTCAGGTTAGTTTT+TGG + chr1_1:54076077-54076096 Msa0028950:intron 35.0%
ACTAAATGTGCAGTACAATC+TGG - chr1_1:54076119-54076138 None:intergenic 35.0%
CTTGTATATTCTCCCTTGTT+GGG - chr1_1:54076374-54076393 None:intergenic 35.0%
ACGAACTAAAAGAGAACTTG+AGG - chr1_1:54076612-54076631 None:intergenic 35.0%
! CTGTGCCATTGATATCAATA+AGG + chr1_1:54076721-54076740 Msa0028950:intron 35.0%
!! CTTGGCCTTATTGATATCAA+TGG - chr1_1:54076729-54076748 None:intergenic 35.0%
!!! ACCCTGGTTTTATACAAGTT+TGG - chr1_1:54076851-54076870 None:intergenic 35.0%
TTTGTTACACATATAGACCC+TGG - chr1_1:54076867-54076886 None:intergenic 35.0%
! TTTGTATTGCCACTTATCGT+TGG + chr1_1:54077173-54077192 Msa0028950:intron 35.0%
GTGCCAGAAAACGTTAATAT+AGG - chr1_1:54077211-54077230 None:intergenic 35.0%
TGTTATATAGTAGCTTCCAG+GGG - chr1_1:54077233-54077252 None:intergenic 35.0%
! CTTGTTATATAGTAGCTTCC+AGG - chr1_1:54077235-54077254 None:intergenic 35.0%
ATTGTTTAGTGACATAGTGG+TGG - chr1_1:54077429-54077448 None:intergenic 35.0%
! CTTCCTTCTGTGTAGATTTT+AGG + chr1_1:54077464-54077483 Msa0028950:intron 35.0%
! GCATTTTCAAATACAACCTG+GGG - chr1_1:54077633-54077652 None:intergenic 35.0%
! CTAGGCAATGTTGTTTGAAA+TGG + chr1_1:54077716-54077735 Msa0028950:intron 35.0%
GTTCACTTCTTGCTAATATC+TGG + chr1_1:54077741-54077760 Msa0028950:intron 35.0%
!!! GGTCGATATTTGTTTTACTC+AGG + chr1_1:54077763-54077782 Msa0028950:intron 35.0%
CTATTTCGAATTTCCCATCT+CGG + chr1_1:54077793-54077812 Msa0028950:CDS 35.0%
GTGTGATAGATAAGGTGAAA+AGG + chr1_1:54077823-54077842 Msa0028950:CDS 35.0%
GACTGAAGCAGTAGAAAATT+TGG + chr1_1:54077896-54077915 Msa0028950:CDS 35.0%
TGAAATATCCCAAAGAACTC+AGG - chr1_1:54078066-54078085 None:intergenic 35.0%
CATGGCAAATTAAAAGTGGA+TGG - chr1_1:54078112-54078131 None:intergenic 35.0%
!!! CATCCACTTTTAATTTGCCA+TGG + chr1_1:54078110-54078129 Msa0028950:three_prime_UTR 35.0%
!!! AGGCGCTATTTTTGAATCAA+TGG + chr1_1:54078150-54078169 Msa0028950:three_prime_UTR 35.0%
TGAAGATAGAAAGAAGGGAG+AGG - chr1_1:54072672-54072691 None:intergenic 40.0%
GGGGAATGAAGATAGAAAGA+AGG - chr1_1:54072678-54072697 None:intergenic 40.0%
!! CCATGGATTTGATTTGAAGG+GGG - chr1_1:54072697-54072716 None:intergenic 40.0%
GGAATAAGAAGGGGTTGTTA+TGG - chr1_1:54072729-54072748 None:intergenic 40.0%
! ATTATTGGAAGTGATGGGAG+AGG - chr1_1:54072834-54072853 None:intergenic 40.0%
! GAGGCATTATTGGAAGTGAT+GGG - chr1_1:54072839-54072858 None:intergenic 40.0%
!! AGAGGCATTATTGGAAGTGA+TGG - chr1_1:54072840-54072859 None:intergenic 40.0%
!! GAAATGACGAGAGGCATTAT+TGG - chr1_1:54072849-54072868 None:intergenic 40.0%
! TGAGTTGGAGAATGAGAGTA+GGG - chr1_1:54072946-54072965 None:intergenic 40.0%
!! TTGAGTTGGAGAATGAGAGT+AGG - chr1_1:54072947-54072966 None:intergenic 40.0%
AAAGCAGTTTCCAAATCCGT+TGG + chr1_1:54073016-54073035 Msa0028950:CDS 40.0%
ACCAGTAATGAACAAAGTGG+TGG + chr1_1:54073052-54073071 Msa0028950:CDS 40.0%
ACCACCACTTTGTTCATTAC+TGG - chr1_1:54073056-54073075 None:intergenic 40.0%
AACAGTAGGAAGACCTTGAT+CGG - chr1_1:54073194-54073213 None:intergenic 40.0%
GTATTCCTAGCAACAACAGT+AGG - chr1_1:54073208-54073227 None:intergenic 40.0%
GTTAGGTTCCAATAGCGAAT+TGG + chr1_1:54073231-54073250 Msa0028950:CDS 40.0%
AAGAACCACCAATTCGCTAT+TGG - chr1_1:54073242-54073261 None:intergenic 40.0%
TGTACAAATCTAGCGACCAA+TGG - chr1_1:54073265-54073284 None:intergenic 40.0%
!!! ACCTATTTTTGCCTCGTTTG+TGG + chr1_1:54073411-54073430 Msa0028950:CDS 40.0%
!!! CCTATTTTTGCCTCGTTTGT+GGG + chr1_1:54073412-54073431 Msa0028950:CDS 40.0%
!!! CTATTTTTGCCTCGTTTGTG+GGG + chr1_1:54073413-54073432 Msa0028950:CDS 40.0%
GAGAAACTTGTCATACGATG+AGG + chr1_1:54073435-54073454 Msa0028950:CDS 40.0%
! GCTTTGAGTTTACTTGCTTC+TGG + chr1_1:54073457-54073476 Msa0028950:CDS 40.0%
! TGGTTTGCAGAGTATAACAG+AGG + chr1_1:54073633-54073652 Msa0028950:CDS 40.0%
CAGAGTATAACAGAGGTTGT+GGG + chr1_1:54073640-54073659 Msa0028950:CDS 40.0%
!! TGTGGGTGGATTTGTTAAAC+TGG + chr1_1:54073657-54073676 Msa0028950:CDS 40.0%
TATAAAGAAAGCTGCACCTC+TGG + chr1_1:54073741-54073760 Msa0028950:CDS 40.0%
TGGTTTCAAATGACAGATGG+AGG + chr1_1:54073869-54073888 Msa0028950:intron 40.0%
!! TCTCAACAAATTCTGGTTCC+TGG + chr1_1:54073970-54073989 Msa0028950:intron 40.0%
!! CTCAACAAATTCTGGTTCCT+GGG + chr1_1:54073971-54073990 Msa0028950:intron 40.0%
ACTCAACCTAAGGTGAAAGT+TGG - chr1_1:54074361-54074380 None:intergenic 40.0%
TATTTGACTCTATTGCCAGG+GGG + chr1_1:54074508-54074527 Msa0028950:intron 40.0%
ACTGTGATTAATGCGCTTCT+TGG + chr1_1:54074551-54074570 Msa0028950:CDS 40.0%
! ACTTCTCTAAGAATTGGAGC+GGG - chr1_1:54074704-54074723 None:intergenic 40.0%
CAAGGGAGAACCAAAACATA+AGG - chr1_1:54074751-54074770 None:intergenic 40.0%
AAGGACGAAGAAAAATGCTG+AGG - chr1_1:54074801-54074820 None:intergenic 40.0%
AAAAGAAGTAAGTCTGCACG+AGG - chr1_1:54074906-54074925 None:intergenic 40.0%
CATACCTCACTTCCAGTTAA+AGG - chr1_1:54074948-54074967 None:intergenic 40.0%
CTTTAACTGGAAGTGAGGTA+TGG + chr1_1:54074946-54074965 Msa0028950:intron 40.0%
ACAGCAATGGAAGAAGAAAG+TGG + chr1_1:54075088-54075107 Msa0028950:CDS 40.0%
!! AGCTTCTAGGATTGATCTAG+TGG + chr1_1:54075193-54075212 Msa0028950:intron 40.0%
TAGGATTGATCTAGTGGTGA+GGG + chr1_1:54075199-54075218 Msa0028950:intron 40.0%
TCACAATTCAATGCAGCTTG+AGG + chr1_1:54075371-54075390 Msa0028950:intron 40.0%
GGAAGCAATGTCCTTCATTA+AGG + chr1_1:54075392-54075411 Msa0028950:CDS 40.0%
!! CTTATGGCTACCTCTAGTTT+TGG + chr1_1:54075492-54075511 Msa0028950:CDS 40.0%
GTTGAGTTTCCCAAAACTAG+AGG - chr1_1:54075505-54075524 None:intergenic 40.0%
AACGAAGAATTGTCAGTCTC+TGG + chr1_1:54075522-54075541 Msa0028950:CDS 40.0%
!! TCAGTCTCTGGTTCTCAATA+TGG + chr1_1:54075534-54075553 Msa0028950:CDS 40.0%
CTCAAGCTCGTAAAAGCTAT+TGG - chr1_1:54075562-54075581 None:intergenic 40.0%
TGGAAAATGAGAGCCTTTCT+TGG + chr1_1:54075784-54075803 Msa0028950:CDS 40.0%
AAAATGAGAGCCTTTCTTGG+AGG + chr1_1:54075787-54075806 Msa0028950:CDS 40.0%
! GAGTTTGTTTCCTCCAAGAA+AGG - chr1_1:54075800-54075819 None:intergenic 40.0%
GAGGAAACAAACTCTATCCA+TGG + chr1_1:54075806-54075825 Msa0028950:CDS 40.0%
ATCCACTAAATCACGTGTTG+TGG + chr1_1:54075928-54075947 Msa0028950:CDS 40.0%
GTCATTCTGAATTCTTGAGG+TGG - chr1_1:54076038-54076057 None:intergenic 40.0%
AAAAAGCGGAGTCCAGTTTA+TGG - chr1_1:54076184-54076203 None:intergenic 40.0%
TTGGATGTACTAGCCATGTT+GGG - chr1_1:54076218-54076237 None:intergenic 40.0%
TTTGGATGTACTAGCCATGT+TGG - chr1_1:54076219-54076238 None:intergenic 40.0%
! TCTCCCTTGTTGGGTATTTT+TGG - chr1_1:54076365-54076384 None:intergenic 40.0%
CCTTGTATATTCTCCCTTGT+TGG - chr1_1:54076375-54076394 None:intergenic 40.0%
CCAACAAGGGAGAATATACA+AGG + chr1_1:54076372-54076391 Msa0028950:CDS 40.0%
!! AGGAATCTTTTGAGAAGCGA+TGG + chr1_1:54076392-54076411 Msa0028950:CDS 40.0%
GTTGTTCAACTGAAGTGACT+TGG - chr1_1:54076747-54076766 None:intergenic 40.0%
GCAACCTGAATAAATCACAC+TGG - chr1_1:54077127-54077146 None:intergenic 40.0%
TTTCCCTGTTCAGTCTTTGT+TGG + chr1_1:54077304-54077323 Msa0028950:intron 40.0%
AGTCCAACAAAGACTGAACA+GGG - chr1_1:54077310-54077329 None:intergenic 40.0%
AAGTCCAACAAAGACTGAAC+AGG - chr1_1:54077311-54077330 None:intergenic 40.0%
GTCCCTAAAATCTACACAGA+AGG - chr1_1:54077470-54077489 None:intergenic 40.0%
!! GTGTAGATTTTAGGGACTCT+TGG + chr1_1:54077473-54077492 Msa0028950:intron 40.0%
ATCTGTACTGCAAACCACAT+TGG + chr1_1:54077535-54077554 Msa0028950:CDS 40.0%
AGCAAGAAGATCTTCCAATG+TGG - chr1_1:54077552-54077571 None:intergenic 40.0%
TTGGAAGATCTTCTTGCTCT+TGG + chr1_1:54077554-54077573 Msa0028950:CDS 40.0%
! GCTCTTGGAATTTGTTCTGT+TGG + chr1_1:54077569-54077588 Msa0028950:CDS 40.0%
! CTTGGAATTTGTTCTGTTGG+CGG + chr1_1:54077572-54077591 Msa0028950:CDS 40.0%
! TTGGAATTTGTTCTGTTGGC+GGG + chr1_1:54077573-54077592 Msa0028950:CDS 40.0%
GAAAAGGAAAGCAGATACCT+TGG + chr1_1:54077839-54077858 Msa0028950:CDS 40.0%
! TTCTTCAAGTTCATTCGCCA+AGG - chr1_1:54077859-54077878 None:intergenic 40.0%
AACTTGAAGAAGCCATGAAG+AGG + chr1_1:54077868-54077887 Msa0028950:CDS 40.0%
ACTTGAAGAAGCCATGAAGA+GGG + chr1_1:54077869-54077888 Msa0028950:CDS 40.0%
TTCAGTCAAATCCCTCTTCA+TGG - chr1_1:54077883-54077902 None:intergenic 40.0%
GATACCTTTGTGAGAGTCAT+TGG + chr1_1:54077918-54077937 Msa0028950:CDS 40.0%
TTTGCCAATGACTCTCACAA+AGG - chr1_1:54077925-54077944 None:intergenic 40.0%
! CTCAGGACACATGAAGATTT+TGG - chr1_1:54078049-54078068 None:intergenic 40.0%
TTCATGTGTCCTGAGTTCTT+TGG + chr1_1:54078054-54078073 Msa0028950:exon 40.0%
TCATGTGTCCTGAGTTCTTT+GGG + chr1_1:54078055-54078074 Msa0028950:exon 40.0%
AGGCCATGGCAAATTAAAAG+TGG - chr1_1:54078116-54078135 None:intergenic 40.0%
ATTTCCTGGAATAGGGTTCA+AGG - chr1_1:54078188-54078207 None:intergenic 40.0%
GATAGAAAGAAGGGAGAGGA+GGG - chr1_1:54072668-54072687 None:intergenic 45.0%
AGATAGAAAGAAGGGAGAGG+AGG - chr1_1:54072669-54072688 None:intergenic 45.0%
CCCCCTTCAAATCAAATCCA+TGG + chr1_1:54072694-54072713 Msa0028950:exon 45.0%
! TGTTATGGAACAGGGTACCA+TGG - chr1_1:54072714-54072733 None:intergenic 45.0%
GAAGGGGTTGTTATGGAACA+GGG - chr1_1:54072722-54072741 None:intergenic 45.0%
AGAAGGGGTTGTTATGGAAC+AGG - chr1_1:54072723-54072742 None:intergenic 45.0%
TAGGAGGGAGGAATAAGAAG+GGG - chr1_1:54072738-54072757 None:intergenic 45.0%
GTAGGAGGGAGGAATAAGAA+GGG - chr1_1:54072739-54072758 None:intergenic 45.0%
AGTAGGAGGGAGGAATAAGA+AGG - chr1_1:54072740-54072759 None:intergenic 45.0%
CTTAGGGAAGAAATGACGAG+AGG - chr1_1:54072858-54072877 None:intergenic 45.0%
CTCTCGTCATTTCTTCCCTA+AGG + chr1_1:54072856-54072875 Msa0028950:CDS 45.0%
! GAGTAGGGACTTTGAGTTCA+GGG - chr1_1:54072931-54072950 None:intergenic 45.0%
! AGAGTAGGGACTTTGAGTTC+AGG - chr1_1:54072932-54072951 None:intergenic 45.0%
ATTCGCCACGTGTAAGAATC+TGG - chr1_1:54072976-54072995 None:intergenic 45.0%
GTCTTCCTACTGTTGTTGCT+AGG + chr1_1:54073200-54073219 Msa0028950:CDS 45.0%
AGGTTCCAATAGCGAATTGG+TGG + chr1_1:54073234-54073253 Msa0028950:CDS 45.0%
! CGAATTGGTGGTTCTTCCAT+TGG + chr1_1:54073246-54073265 Msa0028950:CDS 45.0%
!! CTTATATATGGTGGTGGTGG+TGG + chr1_1:54073334-54073353 Msa0028950:CDS 45.0%
CCCACAAACGAGGCAAAAAT+AGG - chr1_1:54073415-54073434 None:intergenic 45.0%
! TTACTTGCTTCTGGTGCTAG+TGG + chr1_1:54073466-54073485 Msa0028950:CDS 45.0%
!! TGATGGTGGGTTTGCAAATG+AGG + chr1_1:54073549-54073568 Msa0028950:CDS 45.0%
TGCAAATGAGGAGAGAACAC+TGG + chr1_1:54073561-54073580 Msa0028950:CDS 45.0%
GCAGAGTATAACAGAGGTTG+TGG + chr1_1:54073639-54073658 Msa0028950:CDS 45.0%
AGTATAACAGAGGTTGTGGG+TGG + chr1_1:54073643-54073662 Msa0028950:CDS 45.0%
GATTGACGAGCCGTTCTTAT+TGG + chr1_1:54073923-54073942 Msa0028950:CDS 45.0%
GCCGTTCTTATTGGTCATAG+TGG + chr1_1:54073932-54073951 Msa0028950:CDS 45.0%
CTGGTTCCTGGGATATACAT+TGG + chr1_1:54073982-54074001 Msa0028950:intron 45.0%
GGGTGAGATGCAAATACAAC+TGG + chr1_1:54074443-54074462 Msa0028950:intron 45.0%
TGGGTATTACCGAAGCTTCT+AGG + chr1_1:54075180-54075199 Msa0028950:intron 45.0%
CTAGGATTGATCTAGTGGTG+AGG + chr1_1:54075198-54075217 Msa0028950:intron 45.0%
TGATCTAGTGGTGAGGGATT+TGG + chr1_1:54075205-54075224 Msa0028950:intron 45.0%
GATCTAGTGGTGAGGGATTT+GGG + chr1_1:54075206-54075225 Msa0028950:intron 45.0%
GGATTTGGGTAGTATGCATG+AGG + chr1_1:54075220-54075239 Msa0028950:intron 45.0%
GGTAGTATGCATGAGGTCTT+AGG + chr1_1:54075227-54075246 Msa0028950:intron 45.0%
AGTGTACAATGGAGGCAATG+AGG - chr1_1:54075259-54075278 None:intergenic 45.0%
AGTCTGTCTGCAATTCCAAC+AGG - chr1_1:54075657-54075676 None:intergenic 45.0%
AGACTATCGATATGCCAAGC+AGG + chr1_1:54075707-54075726 Msa0028950:CDS 45.0%
TCGATATGCCAAGCAGGATT+TGG + chr1_1:54075713-54075732 Msa0028950:CDS 45.0%
TATTGCAGCCAAATCCTGCT+TGG - chr1_1:54075724-54075743 None:intergenic 45.0%
CTCCACAACACGTGATTTAG+TGG - chr1_1:54075933-54075952 None:intergenic 45.0%
TTCTGAATTCTTGAGGTGGC+AGG - chr1_1:54076034-54076053 None:intergenic 45.0%
TCCTTCTGTGTCATCTGTTC+AGG + chr1_1:54076066-54076085 Msa0028950:CDS 45.0%
ACCTGAACAGATGACACAGA+AGG - chr1_1:54076070-54076089 None:intergenic 45.0%
!!! ACTGGACTCCGCTTTTTCTT+TGG + chr1_1:54076187-54076206 Msa0028950:intron 45.0%
GGGGACATCCAAAGAAAAAG+CGG - chr1_1:54076198-54076217 None:intergenic 45.0%
TTCTTTGGATGTCCCCAACA+TGG + chr1_1:54076202-54076221 Msa0028950:intron 45.0%
TGGATGTACTAGCCATGTTG+GGG - chr1_1:54076217-54076236 None:intergenic 45.0%
AGCGCCAAAAATACCCAACA+AGG + chr1_1:54076358-54076377 Msa0028950:CDS 45.0%
GCGCCAAAAATACCCAACAA+GGG + chr1_1:54076359-54076378 Msa0028950:CDS 45.0%
CTAAAGAAAGGGGATCAAGC+TGG + chr1_1:54076466-54076485 Msa0028950:CDS 45.0%
TGAGCAAGAAGTTCGTGAGA+TGG + chr1_1:54076537-54076556 Msa0028950:CDS 45.0%
CAAAGGCAACTTTGCTGATG+TGG + chr1_1:54076696-54076715 Msa0028950:intron 45.0%
GGTGATCTATGATGCTAGAG+AGG + chr1_1:54077031-54077050 Msa0028950:intron 45.0%
CACATGAAGCCAACGATAAG+TGG - chr1_1:54077185-54077204 None:intergenic 45.0%
ATTGTCTGAGTCTTCCTCAG+CGG + chr1_1:54077353-54077372 Msa0028950:intron 45.0%
GTTTAGTGACATAGTGGTGG+TGG - chr1_1:54077426-54077445 None:intergenic 45.0%
TTAGGGACTCTTGGTCAACT+AGG + chr1_1:54077482-54077501 Msa0028950:CDS 45.0%
TTTCGAATTTCCCATCTCGG+AGG + chr1_1:54077796-54077815 Msa0028950:CDS 45.0%
TTCTGCGCTTGATCTTGGTA+AGG - chr1_1:54077948-54077967 None:intergenic 45.0%
ACCAAGATCAAGCGCAGAAT+AGG + chr1_1:54077949-54077968 Msa0028950:CDS 45.0%
TCTTGCTTAAAGAGAGGCCA+TGG - chr1_1:54078130-54078149 None:intergenic 45.0%
TGGCCTCTCTTTAAGCAAGA+AGG + chr1_1:54078130-54078149 Msa0028950:three_prime_UTR 45.0%
ATGTCCTTGAACCCTATTCC+AGG + chr1_1:54078181-54078200 Msa0028950:three_prime_UTR 45.0%
AGGTGTGGATAGCGAGAGAA+GGG - chr1_1:54072788-54072807 None:intergenic 50.0%
! AATGGAGAGTGCGGCGAAAA+GGG - chr1_1:54072811-54072830 None:intergenic 50.0%
! TGGAAGTGATGGGAGAGGAA+TGG - chr1_1:54072829-54072848 None:intergenic 50.0%
! GAGTGTTCTAGGTTGGGGTT+GGG - chr1_1:54072888-54072907 None:intergenic 50.0%
! AGAGTGTTCTAGGTTGGGGT+TGG - chr1_1:54072889-54072908 None:intergenic 50.0%
!! GGGAAGAGTGTTCTAGGTTG+GGG - chr1_1:54072893-54072912 None:intergenic 50.0%
!! GGGGAAGAGTGTTCTAGGTT+GGG - chr1_1:54072894-54072913 None:intergenic 50.0%
CAACCTAGAACACTCTTCCC+CGG + chr1_1:54072893-54072912 Msa0028950:CDS 50.0%
GAATCTGGTCGGAGTTGAGT+TGG - chr1_1:54072961-54072980 None:intergenic 50.0%
TCCGACCAGATTCTTACACG+TGG + chr1_1:54072968-54072987 Msa0028950:CDS 50.0%
GCCACGTGTAAGAATCTGGT+CGG - chr1_1:54072972-54072991 None:intergenic 50.0%
ATCGGAGAGTAAAACGCCAC+TGG - chr1_1:54073176-54073195 None:intergenic 50.0%
! GGCGTTTTACTCTCCGATCA+AGG + chr1_1:54073178-54073197 Msa0028950:CDS 50.0%
CAAGTTTCTCCCCACAAACG+AGG - chr1_1:54073425-54073444 None:intergenic 50.0%
!! CGCTGTGAAAGGTATCCAGA+TGG + chr1_1:54074659-54074678 Msa0028950:CDS 50.0%
! CTCTAAGAATTGGAGCGGGA+AGG - chr1_1:54074700-54074719 None:intergenic 50.0%
GAGACAACAGCGTCTTACAG+AGG + chr1_1:54074872-54074891 Msa0028950:CDS 50.0%
TCAGCTGATCGCCCTTTAAC+TGG + chr1_1:54074933-54074952 Msa0028950:CDS 50.0%
TCGCCCTTTAACTGGAAGTG+AGG + chr1_1:54074941-54074960 Msa0028950:CDS 50.0%
TACAGTGTACTTACCCACCC+AGG + chr1_1:54075016-54075035 Msa0028950:intron 50.0%
ACAGTGTACTTACCCACCCA+GGG + chr1_1:54075017-54075036 Msa0028950:intron 50.0%
AACATGTCATACCCCTGGGT+GGG - chr1_1:54075032-54075051 None:intergenic 50.0%
AAACATGTCATACCCCTGGG+TGG - chr1_1:54075033-54075052 None:intergenic 50.0%
TCGCAGGGATGGATAGAATG+AGG + chr1_1:54075616-54075635 Msa0028950:CDS 50.0%
!! TTAACGTTTTCTGGCACCCC+TGG + chr1_1:54077214-54077233 Msa0028950:intron 50.0%
GACTCTTGGTCAACTAGGAG+TGG + chr1_1:54077487-54077506 Msa0028950:CDS 50.0%
GCCTATTCTGCGCTTGATCT+TGG - chr1_1:54077953-54077972 None:intergenic 50.0%
GCGCCTTCTTGCTTAAAGAG+AGG - chr1_1:54078136-54078155 None:intergenic 50.0%
GGGAGGGAGATATGGATGGA+TGG - chr1_1:54072648-54072667 None:intergenic 55.0%
AGGAGGGAGGGAGATATGGA+TGG - chr1_1:54072652-54072671 None:intergenic 55.0%
GAAAGAAGGGAGAGGAGGGA+GGG - chr1_1:54072664-54072683 None:intergenic 55.0%
AGAAAGAAGGGAGAGGAGGG+AGG - chr1_1:54072665-54072684 None:intergenic 55.0%
TGAAGAAGGGAGTAGGAGGG+AGG - chr1_1:54072750-54072769 None:intergenic 55.0%
GGGTGAAGAAGGGAGTAGGA+GGG - chr1_1:54072753-54072772 None:intergenic 55.0%
TGGTAGGGAGGGGTGAAGAA+GGG - chr1_1:54072763-54072782 None:intergenic 55.0%
GTGTGGATAGCGAGAGAAGG+GGG - chr1_1:54072786-54072805 None:intergenic 55.0%
GGTGTGGATAGCGAGAGAAG+GGG - chr1_1:54072787-54072806 None:intergenic 55.0%
GAGGTGTGGATAGCGAGAGA+AGG - chr1_1:54072789-54072808 None:intergenic 55.0%
! GAATGGAGAGTGCGGCGAAA+AGG - chr1_1:54072812-54072831 None:intergenic 55.0%
TGGGAGAGGAATGGAGAGTG+CGG - chr1_1:54072820-54072839 None:intergenic 55.0%
! TCTAGGTTGGGGTTGGGCTT+TGG - chr1_1:54072882-54072901 None:intergenic 55.0%
!! CGGGGAAGAGTGTTCTAGGT+TGG - chr1_1:54072895-54072914 None:intergenic 55.0%
! TTCAGGGCGTTTGTAACCGC+CGG - chr1_1:54072915-54072934 None:intergenic 55.0%
AACGCCACTGGTAACAGCAG+CGG - chr1_1:54073164-54073183 None:intergenic 55.0%
TGCCAGGGGGAATTCAACTC+TGG + chr1_1:54074521-54074540 Msa0028950:intron 55.0%
TGCCAGAGTTGAATTCCCCC+TGG - chr1_1:54074526-54074545 None:intergenic 55.0%
CAGTGTACTTACCCACCCAG+GGG + chr1_1:54075018-54075037 Msa0028950:intron 55.0%
AGAGCAGATCGAGCAGACAC+AGG - chr1_1:54075462-54075481 None:intergenic 55.0%
TAGATGGGTCGACGATCGCA+GGG + chr1_1:54075601-54075620 Msa0028950:CDS 55.0%
AGGGGATCAAGCTGGCTATC+AGG + chr1_1:54076474-54076493 Msa0028950:CDS 55.0%
CTTGGTCAACTAGGAGTGGC+TGG + chr1_1:54077491-54077510 Msa0028950:CDS 55.0%
CGAATTTCCCATCTCGGAGG+CGG + chr1_1:54077799-54077818 Msa0028950:CDS 55.0%
GAGGCGGCGTGTGATAGATA+AGG + chr1_1:54077815-54077834 Msa0028950:CDS 55.0%
GGAGAGGAGGGAGGGAGATA+TGG - chr1_1:54072656-54072675 None:intergenic 60.0%
GGGGTGAAGAAGGGAGTAGG+AGG - chr1_1:54072754-54072773 None:intergenic 60.0%
GGAGGGGTGAAGAAGGGAGT+AGG - chr1_1:54072757-54072776 None:intergenic 60.0%
GTGGTAGGGAGGGGTGAAGA+AGG - chr1_1:54072764-54072783 None:intergenic 60.0%
AGAGAAGGGGGTGGTAGGGA+GGG - chr1_1:54072774-54072793 None:intergenic 60.0%
AGCGAGAGAAGGGGGTGGTA+GGG - chr1_1:54072778-54072797 None:intergenic 60.0%
TAGCGAGAGAAGGGGGTGGT+AGG - chr1_1:54072779-54072798 None:intergenic 60.0%
TGGATAGCGAGAGAAGGGGG+TGG - chr1_1:54072783-54072802 None:intergenic 60.0%
!! GGGGTTGGGCTTTGGCCTTA+GGG - chr1_1:54072874-54072893 None:intergenic 60.0%
! TGGGGTTGGGCTTTGGCCTT+AGG - chr1_1:54072875-54072894 None:intergenic 60.0%
CCTAGAACACTCTTCCCCGG+CGG + chr1_1:54072896-54072915 Msa0028950:CDS 60.0%
! TCAGGGCGTTTGTAACCGCC+GGG - chr1_1:54072914-54072933 None:intergenic 60.0%
!! TGGTGGTGGTGGTGGCGATA+TGG + chr1_1:54073342-54073361 Msa0028950:CDS 60.0%
CTAGATGGGTCGACGATCGC+AGG + chr1_1:54075600-54075619 Msa0028950:CDS 60.0%
GAGAAGGGGGTGGTAGGGAG+GGG - chr1_1:54072773-54072792 None:intergenic 65.0%
GAGAGAAGGGGGTGGTAGGG+AGG - chr1_1:54072775-54072794 None:intergenic 65.0%
GTGCGGCGAAAAGGGAGGTG+TGG - chr1_1:54072803-54072822 None:intergenic 65.0%
! GGAGAGTGCGGCGAAAAGGG+AGG - chr1_1:54072808-54072827 None:intergenic 65.0%
!! CCGCCGGGGAAGAGTGTTCT+AGG - chr1_1:54072899-54072918 None:intergenic 65.0%
! CAGGGCGTTTGTAACCGCCG+GGG - chr1_1:54072913-54072932 None:intergenic 65.0%
GCTGCCGCTGCTGTTACCAG+TGG + chr1_1:54073157-54073176 Msa0028950:CDS 65.0%
TGGGTCGACGATCGCAGGGA+TGG + chr1_1:54075605-54075624 Msa0028950:CDS 65.0%
TCACACGCCGCCTCCGAGAT+GGG - chr1_1:54077809-54077828 None:intergenic 65.0%
ATCACACGCCGCCTCCGAGA+TGG - chr1_1:54077810-54077829 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 54072628 54078368 54072628 ID=Msa0028950;Name=Msa0028950
chr1_1 mRNA 54072628 54078368 54072628 ID=Msa0028950-mRNA-1;Parent=Msa0028950;Name=Msa0028950-mRNA-1;_AED=0.15;_eAED=0.15;_QI=85|1|1|1|1|1|10|301|922
chr1_1 exon 54072628 54073762 54072628 ID=Msa0028950-mRNA-1:exon:15942;Parent=Msa0028950-mRNA-1
chr1_1 exon 54073885 54073953 54073885 ID=Msa0028950-mRNA-1:exon:15943;Parent=Msa0028950-mRNA-1
chr1_1 exon 54074527 54074721 54074527 ID=Msa0028950-mRNA-1:exon:15944;Parent=Msa0028950-mRNA-1
chr1_1 exon 54074831 54074962 54074831 ID=Msa0028950-mRNA-1:exon:15945;Parent=Msa0028950-mRNA-1
chr1_1 exon 54075068 54075154 54075068 ID=Msa0028950-mRNA-1:exon:15946;Parent=Msa0028950-mRNA-1
chr1_1 exon 54075387 54075827 54075387 ID=Msa0028950-mRNA-1:exon:15947;Parent=Msa0028950-mRNA-1
chr1_1 exon 54075923 54076087 54075923 ID=Msa0028950-mRNA-1:exon:15948;Parent=Msa0028950-mRNA-1
chr1_1 exon 54076328 54076558 54076328 ID=Msa0028950-mRNA-1:exon:15949;Parent=Msa0028950-mRNA-1
chr1_1 exon 54077479 54077594 54077479 ID=Msa0028950-mRNA-1:exon:15950;Parent=Msa0028950-mRNA-1
chr1_1 exon 54077785 54078368 54077785 ID=Msa0028950-mRNA-1:exon:15951;Parent=Msa0028950-mRNA-1
chr1_1 five_prime_UTR 54072628 54072712 54072628 ID=Msa0028950-mRNA-1:five_prime_utr;Parent=Msa0028950-mRNA-1
chr1_1 CDS 54072713 54073762 54072713 ID=Msa0028950-mRNA-1:cds;Parent=Msa0028950-mRNA-1
chr1_1 CDS 54073885 54073953 54073885 ID=Msa0028950-mRNA-1:cds;Parent=Msa0028950-mRNA-1
chr1_1 CDS 54074527 54074721 54074527 ID=Msa0028950-mRNA-1:cds;Parent=Msa0028950-mRNA-1
chr1_1 CDS 54074831 54074962 54074831 ID=Msa0028950-mRNA-1:cds;Parent=Msa0028950-mRNA-1
chr1_1 CDS 54075068 54075154 54075068 ID=Msa0028950-mRNA-1:cds;Parent=Msa0028950-mRNA-1
chr1_1 CDS 54075387 54075827 54075387 ID=Msa0028950-mRNA-1:cds;Parent=Msa0028950-mRNA-1
chr1_1 CDS 54075923 54076087 54075923 ID=Msa0028950-mRNA-1:cds;Parent=Msa0028950-mRNA-1
chr1_1 CDS 54076328 54076558 54076328 ID=Msa0028950-mRNA-1:cds;Parent=Msa0028950-mRNA-1
chr1_1 CDS 54077479 54077594 54077479 ID=Msa0028950-mRNA-1:cds;Parent=Msa0028950-mRNA-1
chr1_1 CDS 54077785 54078067 54077785 ID=Msa0028950-mRNA-1:cds;Parent=Msa0028950-mRNA-1
chr1_1 three_prime_UTR 54078068 54078368 54078068 ID=Msa0028950-mRNA-1:three_prime_utr;Parent=Msa0028950-mRNA-1
Gene Sequence

>Msa0028950

ATGGTACCCTGTTCCATAACAACCCCTTCTTATTCCTCCCTCCTACTCCCTTCTTCACCCCTCCCTACCACCCCCTTCTCTCGCTATCCACACCTCCCTTTTCGCCGCACTCTCCATTCCTCTCCCATCACTTCCAATAATGCCTCTCGTCATTTCTTCCCTAAGGCCAAAGCCCAACCCCAACCTAGAACACTCTTCCCCGGCGGTTACAAACGCCCTGAACTCAAAGTCCCTACTCTCATTCTCCAACTCAACTCCGACCAGATTCTTACACGTGGCGAATCCGCACTAGACTTGATCGATAAAGCAGTTTCCAAATCCGTTGGAATTGTGATTCTAACCAGTAATGAACAAAGTGGTGGTAAACTCTATGAAGCTGCTTGTTTGTTGAAATCACTTATTCGTGATCGCGCTTATTTGTTAGTTGCTGAGCGTGTTGATATTGCTGCCGCTGCTGTTACCAGTGGCGTTTTACTCTCCGATCAAGGTCTTCCTACTGTTGTTGCTAGGAATACAATGTTAGGTTCCAATAGCGAATTGGTGGTTCTTCCATTGGTCGCTAGATTTGTACAAACTGTAGATGCTGCTGTAAATGCATCCAAATCTGAAGGTGCTGATTTTCTTATATATGGTGGTGGTGGTGGCGATATGGAACTTTTAAATCAGGAAATTGGTAATGTAGTTGAGAATGTGAAGATACCTATTTTTGCCTCGTTTGTGGGGAGAAACTTGTCATACGATGAGGCTTTGAGTTTACTTGCTTCTGGTGCTAGTGGTTTTGTTACTAGTTTGGAAAGTTTTGGGTTGTTTGATGATGATTTGCTTCGTAAATTATTTGATGGTGGGTTTGCAAATGAGGAGAGAACACTGGATGATCGTCGTGATGAAATTGATGATGATAAATTAGTCAATGAGAGTAATGGTTTGCAGAGTATAACAGAGGTTGTGGGTGGATTTGTTAAACTGGAAGATAGGGAGAAACAGTTAATAGAAATGGAGAGGTCGGTGTTGAATGAAGCTATTGAAGTTATAAAGAAAGCTGCACCTCTGATGGAGGAAGTTTCGCTTCTTGATGATGCAGTTTCTCAGATTGACGAGCCGTTCTTATTGGTCATAGTGGGGGAATTCAACTCTGGCAAATCTACTGTGATTAATGCGCTTCTTGGAGAAAGATATCTCAAAGACGGGGTTGTTCCAACAACGAATGAGATCACATTTTTACGATATAATGACCTAGATATTGAAAAACAACGCTGTGAAAGGTATCCAGATGGTCAATATATTTGCTACCTTCCCGCTCCAATTCTTAGAGAAATGACAATTGTTGATACACCTGGAACTAATGTAATTCTTCAGAGACAACAGCGTCTTACAGAGGAATTTGTGCCTCGTGCAGACTTACTTCTTTTTGTTATTTCAGCTGATCGCCCTTTAACTGGAAGTGAGGTTGCTTTTCTTCGTTATTCACAGCAATGGAAGAAGAAAGTGGTCTTTGTTTTGAACAAAGCTGACATTTATCAGAATAATCATGAGCTTGAGGAAGCAATGTCCTTCATTAAGGACAACATAAAGAGATTGTTGAAAACGGAAGATGTGATATTATATCCTGTGTCTGCTCGATCTGCTCTTGAAGCAAAACTTATGGCTACCTCTAGTTTTGGGAAACTCAACGAAGAATTGTCAGTCTCTGGTTCTCAATATGGTCCCAATAGCTTTTACGAGCTTGAGAAATTTTTATATAGCTTTCTAGATGGGTCGACGATCGCAGGGATGGATAGAATGAGGCTTAAACTTGAAACACCTGTTGGAATTGCAGACAGACTGATTTCTGCATGTGAAACTCTTGTGACACAAGACTATCGATATGCCAAGCAGGATTTGGCTGCAATAAACGATGTTGTCAACAGTGTAAATGATTTTGCATTGAATATGGAAAATGAGAGCCTTTCTTGGAGGAAACAAACTCTATCCATGATTGAATCCACTAAATCACGTGTTGTGGAGCTTGTAGAAGCTACAATGCAATTGTCAAATCTTGATATTGTTGTATCATATGTTTTCAAAGGAGAGAAACATGCGACACCTGCCACCTCAAGAATTCAGAATGACATAATTGATCCTTCTGTGTCATCTGTTCAGAAAATACTTGGAGATTACGAAAATTGGTTAAGCGCCAAAAATACCCAACAAGGGAGAATATACAAGGAATCTTTTGAGAAGCGATGGTCCTCATTGATTCATGAAAATAGTCAGAAGAATATTGAGACATATGAGTTGCTAAAGAAAGGGGATCAAGCTGGCTATCAGGTGATTGAAAATTTCAGCAGCAGTGCAGTTTCAAAGTCATTTGAGCAAGAAGTTCGTGAGATGATTTTAGGGACTCTTGGTCAACTAGGAGTGGCTGGTTTTTCTGCTTCACTATTGACATCTGTACTGCAAACCACATTGGAAGATCTTCTTGCTCTTGGAATTTGTTCTGTTGGCGGGTATATAGCTATTTCGAATTTCCCATCTCGGAGGCGGCGTGTGATAGATAAGGTGAAAAGGAAAGCAGATACCTTGGCGAATGAACTTGAAGAAGCCATGAAGAGGGATTTGACTGAAGCAGTAGAAAATTTGGATACCTTTGTGAGAGTCATTGGCAAACCTTACCAAGATCAAGCGCAGAATAGGCTAAACAAGCTAGTTGAGATTCAAGAAGAAATATCAAATATTGAAAAGAAACTTAGAACACTACAAATTGATATCCAAAATCTTCATGTGTCCTGA
Protein sequence

>Msa0028950

MVPCSITTPSYSSLLLPSSPLPTTPFSRYPHLPFRRTLHSSPITSNNASRHFFPKAKAQPQPRTLFPGGYKRPELKVPTLILQLNSDQILTRGESALDLIDKAVSKSVGIVILTSNEQSGGKLYEAACLLKSLIRDRAYLLVAERVDIAAAAVTSGVLLSDQGLPTVVARNTMLGSNSELVVLPLVARFVQTVDAAVNASKSEGADFLIYGGGGGDMELLNQEIGNVVENVKIPIFASFVGRNLSYDEALSLLASGASGFVTSLESFGLFDDDLLRKLFDGGFANEERTLDDRRDEIDDDKLVNESNGLQSITEVVGGFVKLEDREKQLIEMERSVLNEAIEVIKKAAPLMEEVSLLDDAVSQIDEPFLLVIVGEFNSGKSTVINALLGERYLKDGVVPTTNEITFLRYNDLDIEKQRCERYPDGQYICYLPAPILREMTIVDTPGTNVILQRQQRLTEEFVPRADLLLFVISADRPLTGSEVAFLRYSQQWKKKVVFVLNKADIYQNNHELEEAMSFIKDNIKRLLKTEDVILYPVSARSALEAKLMATSSFGKLNEELSVSGSQYGPNSFYELEKFLYSFLDGSTIAGMDRMRLKLETPVGIADRLISACETLVTQDYRYAKQDLAAINDVVNSVNDFALNMENESLSWRKQTLSMIESTKSRVVELVEATMQLSNLDIVVSYVFKGEKHATPATSRIQNDIIDPSVSSVQKILGDYENWLSAKNTQQGRIYKESFEKRWSSLIHENSQKNIETYELLKKGDQAGYQVIENFSSSAVSKSFEQEVREMILGTLGQLGVAGFSASLLTSVLQTTLEDLLALGICSVGGYIAISNFPSRRRRVIDKVKRKADTLANELEEAMKRDLTEAVENLDTFVRVIGKPYQDQAQNRLNKLVEIQEEISNIEKKLRTLQIDIQNLHVS*