Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007040.t1 | GAU17571.1 | 61.9 | 365 | 91 | 5 | 3 | 319 | 4 | 368 | 4.00E-100 | 374.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007040.t1 | Q9FPT1 | 39.2 | 130 | 69 | 2 | 9 | 129 | 56 | 184 | 2.5e-18 | 94.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007040.t1 | A0A2Z6LZ07 | 61.9 | 365 | 91 | 5 | 3 | 319 | 4 | 368 | 2.9e-100 | 374.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038336 | MS.gene007040 | PPI |
| MS.gene007040 | MS.gene038327 | PPI |
| MS.gene017099 | MS.gene007040 | PPI |
| MS.gene038323 | MS.gene007040 | PPI |
| MS.gene038333 | MS.gene007040 | PPI |
| MS.gene007040 | MS.gene057070 | PPI |
| MS.gene007040 | MS.gene030045 | PPI |
| MS.gene007040 | MS.gene038342 | PPI |
| MS.gene030034 | MS.gene007040 | PPI |
| MS.gene030029 | MS.gene007040 | PPI |
| MS.gene007040 | MS.gene017100 | PPI |
| MS.gene038330 | MS.gene007040 | PPI |
| MS.gene017102 | MS.gene007040 | PPI |
| MS.gene038342 | MS.gene007040 | PPI |
| MS.gene007040 | MS.gene030026 | PPI |
| MS.gene007040 | MS.gene038326 | PPI |
| MS.gene007040 | MS.gene017083 | PPI |
| MS.gene038300 | MS.gene007040 | PPI |
| MS.gene007040 | MS.gene038324 | PPI |
| MS.gene057066 | MS.gene007040 | PPI |
| MS.gene030037 | MS.gene007040 | PPI |
| MS.gene007040 | MS.gene030042 | PPI |
| MS.gene030033 | MS.gene007040 | PPI |
| MS.gene007040 | MS.gene017101 | PPI |
| MS.gene007040 | MS.gene057065 | PPI |
| MS.gene057069 | MS.gene007040 | PPI |
| MS.gene038328 | MS.gene007040 | PPI |
| MS.gene007040 | MS.gene017115 | PPI |
| MS.gene057090 | MS.gene007040 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007040.t1 | MTR_1g042160 | 47.761 | 335 | 108 | 5 | 8 | 313 | 12 | 308 | 3.32e-98 | 292 |
| MS.gene007040.t1 | MTR_7g107200 | 44.414 | 367 | 143 | 7 | 8 | 315 | 12 | 376 | 9.06e-93 | 281 |
| MS.gene007040.t1 | MTR_7g107170 | 70.552 | 163 | 42 | 2 | 163 | 319 | 107 | 269 | 2.67e-76 | 235 |
| MS.gene007040.t1 | MTR_7g107170 | 58.621 | 87 | 36 | 0 | 218 | 304 | 1 | 87 | 7.72e-26 | 103 |
| MS.gene007040.t1 | MTR_7g107160 | 43.027 | 337 | 152 | 11 | 3 | 313 | 121 | 443 | 1.85e-65 | 213 |
| MS.gene007040.t1 | MTR_8g011730 | 32.123 | 358 | 181 | 10 | 7 | 316 | 12 | 355 | 1.72e-46 | 160 |
| MS.gene007040.t1 | MTR_3g079840 | 39.695 | 131 | 67 | 5 | 9 | 129 | 57 | 185 | 3.96e-22 | 97.4 |
| MS.gene007040.t1 | MTR_3g079840 | 39.695 | 131 | 67 | 5 | 9 | 129 | 56 | 184 | 4.00e-22 | 97.4 |
| MS.gene007040.t1 | MTR_5g091450 | 35.200 | 125 | 72 | 1 | 9 | 124 | 33 | 157 | 2.57e-21 | 95.1 |
| MS.gene007040.t1 | MTR_5g086700 | 35.507 | 138 | 77 | 5 | 2 | 129 | 54 | 189 | 4.18e-20 | 91.7 |
| MS.gene007040.t1 | MTR_5g086700 | 35.507 | 138 | 77 | 5 | 2 | 129 | 54 | 189 | 4.30e-20 | 91.7 |
| MS.gene007040.t1 | MTR_2g034780 | 36.413 | 184 | 104 | 5 | 134 | 308 | 82 | 261 | 4.01e-19 | 85.9 |
| MS.gene007040.t1 | MTR_1g041240 | 35.821 | 134 | 75 | 5 | 2 | 126 | 52 | 183 | 1.02e-17 | 84.3 |
| MS.gene007040.t1 | MTR_1g041240 | 35.821 | 134 | 75 | 5 | 2 | 126 | 51 | 182 | 1.03e-17 | 84.3 |
| MS.gene007040.t1 | MTR_1g041240 | 35.821 | 134 | 75 | 5 | 2 | 126 | 50 | 181 | 1.11e-17 | 84.3 |
| MS.gene007040.t1 | MTR_5g091550 | 33.858 | 127 | 74 | 2 | 7 | 124 | 17 | 142 | 3.67e-15 | 76.3 |
| MS.gene007040.t1 | MTR_5g091550 | 33.858 | 127 | 74 | 2 | 7 | 124 | 17 | 142 | 3.88e-15 | 76.3 |
| MS.gene007040.t1 | MTR_5g091180 | 32.000 | 125 | 76 | 1 | 9 | 124 | 46 | 170 | 6.47e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007040.t1 | AT5G06600 | 41.221 | 131 | 65 | 5 | 9 | 129 | 56 | 184 | 9.22e-21 | 93.6 |
| MS.gene007040.t1 | AT5G06600 | 41.221 | 131 | 65 | 5 | 9 | 129 | 55 | 183 | 9.57e-21 | 93.6 |
| MS.gene007040.t1 | AT5G06600 | 41.221 | 131 | 65 | 5 | 9 | 129 | 56 | 184 | 1.07e-20 | 93.2 |
| MS.gene007040.t1 | AT3G11910 | 39.695 | 131 | 67 | 4 | 9 | 129 | 55 | 183 | 1.14e-20 | 93.2 |
| MS.gene007040.t1 | AT3G11910 | 39.695 | 131 | 67 | 4 | 9 | 129 | 55 | 183 | 1.14e-20 | 93.2 |
| MS.gene007040.t1 | AT3G11910 | 39.695 | 131 | 67 | 4 | 9 | 129 | 54 | 182 | 1.19e-20 | 93.2 |
| MS.gene007040.t1 | AT3G11910 | 39.695 | 131 | 67 | 4 | 9 | 129 | 54 | 182 | 1.19e-20 | 93.2 |
| MS.gene007040.t1 | AT3G58360 | 30.303 | 132 | 82 | 3 | 7 | 129 | 6 | 136 | 1.79e-12 | 67.4 |
| MS.gene007040.t1 | AT3G58370 | 32.331 | 133 | 77 | 3 | 9 | 129 | 9 | 140 | 6.05e-12 | 65.9 |
| MS.gene007040.t1 | AT3G58210 | 28.421 | 190 | 108 | 4 | 9 | 188 | 8 | 179 | 1.34e-11 | 65.1 |
| MS.gene007040.t1 | AT3G58410 | 31.707 | 123 | 77 | 2 | 8 | 124 | 7 | 128 | 1.48e-11 | 64.7 |
| MS.gene007040.t1 | AT3G44800 | 31.298 | 131 | 81 | 1 | 8 | 129 | 4 | 134 | 2.14e-11 | 64.3 |
| MS.gene007040.t1 | AT3G58410 | 32.787 | 122 | 63 | 4 | 8 | 124 | 28 | 135 | 2.31e-11 | 64.3 |
| MS.gene007040.t1 | AT2G32870 | 33.582 | 134 | 72 | 4 | 9 | 126 | 277 | 409 | 9.41e-11 | 62.8 |
Find 72 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGATTTAGATTCTGAATT+AGG | 0.193931 | 7.3:+6526064 | MS.gene007040:CDS |
| ACCCTCAATTGAAGTGCTTA+TGG | 0.241179 | 7.3:+6525643 | MS.gene007040:CDS |
| TTGAAATAGTTTCCAGATTT+GGG | 0.266501 | 7.3:-6525562 | None:intergenic |
| GTTGAAATAGTTTCCAGATT+TGG | 0.273996 | 7.3:-6525563 | None:intergenic |
| CCCCATGTTCAATTTGCTTT+AGG | 0.275944 | 7.3:+6525881 | MS.gene007040:CDS |
| TTTAGGTATCCACTTGAAAA+AGG | 0.281912 | 7.3:-6525095 | None:intergenic |
| GGGCCTTGAACTCCAGGATT+TGG | 0.290827 | 7.3:-6525542 | None:intergenic |
| CGTCTACTTATCAATTTACT+TGG | 0.300996 | 7.3:+6524921 | MS.gene007040:CDS |
| GGCTGCTGCTGAGGTAAATA+TGG | 0.309872 | 7.3:+6526000 | MS.gene007040:CDS |
| AGAGAAGCTAAAGGCAAAAT+TGG | 0.311627 | 7.3:+6525979 | MS.gene007040:CDS |
| GAACTCCAGGATTTGGCCTT+GGG | 0.314486 | 7.3:-6525535 | None:intergenic |
| TCTGTATCAGTATGTTTAAT+AGG | 0.321275 | 7.3:-6525611 | None:intergenic |
| TGAACTCCAGGATTTGGCCT+TGG | 0.329525 | 7.3:-6525536 | None:intergenic |
| GATCTGGCTTTCTCCGCATT+GGG | 0.349102 | 7.3:+6525737 | MS.gene007040:CDS |
| ATTTCTCAACATTGGATTGT+TGG | 0.361734 | 7.3:-6524669 | None:intergenic |
| CTGAATTAGGATGTGGGAGT+TGG | 0.368812 | 7.3:+6526077 | MS.gene007040:CDS |
| GTGAAGGATGCTTGTATTGT+TGG | 0.378080 | 7.3:+6525400 | MS.gene007040:CDS |
| TGGAGTTCAAGGCCCAAATC+TGG | 0.378140 | 7.3:+6525550 | MS.gene007040:CDS |
| AAAATTTGTCTGTATCCAAC+TGG | 0.378589 | 7.3:+6524886 | MS.gene007040:CDS |
| AATTTAGATTTGATCTTACT+TGG | 0.378814 | 7.3:+6525852 | MS.gene007040:CDS |
| ATCAGTATGTTTAATAGGTT+CGG | 0.394828 | 7.3:-6525606 | None:intergenic |
| CGATCTGGCTTTCTCCGCAT+TGG | 0.395706 | 7.3:+6525736 | MS.gene007040:CDS |
| AGATTTGGGCCTTGAACTCC+AGG | 0.410070 | 7.3:-6525548 | None:intergenic |
| GAACTACAGGAAGTAAGATT+TGG | 0.411260 | 7.3:+6525680 | MS.gene007040:CDS |
| AAAGACTTGTTGAAAGCAAA+AGG | 0.417159 | 7.3:+6526031 | MS.gene007040:CDS |
| GGATAGCCGCCTGCAACAAA+AGG | 0.446112 | 7.3:-6524748 | None:intergenic |
| TGAATTAGGATGTGGGAGTT+GGG | 0.447146 | 7.3:+6526078 | MS.gene007040:CDS |
| AGGCCAAATCCTGGAGTTCA+AGG | 0.455231 | 7.3:+6525539 | MS.gene007040:CDS |
| CCATGTAAATTTCTCAACAT+TGG | 0.459723 | 7.3:-6524677 | None:intergenic |
| ATGTGGGAGTTGGGAACCAT+AGG | 0.460618 | 7.3:+6526087 | MS.gene007040:CDS |
| CTACTTATCAATTTACTTGG+AGG | 0.463032 | 7.3:+6524924 | MS.gene007040:CDS |
| ATCCATAAGCACTTCAATTG+AGG | 0.469428 | 7.3:-6525645 | None:intergenic |
| TTAGATTCTGAATTAGGATG+TGG | 0.474050 | 7.3:+6526070 | MS.gene007040:CDS |
| GGCAAAATTGGCTGCTGCTG+AGG | 0.485315 | 7.3:+6525991 | MS.gene007040:CDS |
| GAAGTCCCAAGGCCAAATCC+TGG | 0.490222 | 7.3:+6525530 | MS.gene007040:CDS |
| AAATTGCGACTTCTCTTTGA+CGG | 0.493658 | 7.3:-6525710 | None:intergenic |
| ATCCACAAGATTTCTGTCAA+TGG | 0.496752 | 7.3:+6525119 | MS.gene007040:CDS |
| TTTCAGCAGTGTAGAACTAC+AGG | 0.498012 | 7.3:+6525667 | MS.gene007040:CDS |
| TCCATAAGCACTTCAATTGA+GGG | 0.498056 | 7.3:-6525644 | None:intergenic |
| AATTGCGACTTCTCTTTGAC+GGG | 0.499456 | 7.3:-6525709 | None:intergenic |
| CTTGAAGATCCTCACAAGCC+TGG | 0.504716 | 7.3:-6525808 | None:intergenic |
| TTGTTGCAGGCGGCTATCCA+TGG | 0.509193 | 7.3:+6524752 | MS.gene007040:CDS |
| TAAAAGAGGGTTTGTTGTGA+AGG | 0.513996 | 7.3:+6525384 | MS.gene007040:CDS |
| TACCATTGACAGAAATCTTG+TGG | 0.514312 | 7.3:-6525121 | None:intergenic |
| AAGCTTCATCATCCTAAAAG+AGG | 0.516459 | 7.3:+6525370 | MS.gene007040:CDS |
| TGTTGAGAAATTTACATGGA+AGG | 0.525784 | 7.3:+6524681 | MS.gene007040:CDS |
| TGAAAAGCTGAAAGAGAATG+TGG | 0.531880 | 7.3:+6525937 | MS.gene007040:CDS |
| CATGGATGACCAGGCTTGTG+AGG | 0.532003 | 7.3:+6525799 | MS.gene007040:CDS |
| CCAATGTTGAGAAATTTACA+TGG | 0.532545 | 7.3:+6524677 | MS.gene007040:CDS |
| TAGATTCTGAATTAGGATGT+GGG | 0.536728 | 7.3:+6526071 | MS.gene007040:CDS |
| TTCCTAAAGCAAATTGAACA+TGG | 0.538306 | 7.3:-6525883 | None:intergenic |
| GAATGTGGTAGCTCTTGAGC+TGG | 0.541953 | 7.3:+6525952 | MS.gene007040:CDS |
| AAATCTGGAAACTATTTCAA+CGG | 0.552571 | 7.3:+6525565 | MS.gene007040:CDS |
| TGTCTGTATCCAACTGGGGA+TGG | 0.554086 | 7.3:+6524892 | MS.gene007040:CDS |
| AATGCTAGTGGGAGTAGTTG+CGG | 0.557318 | 7.3:+6525322 | MS.gene007040:CDS |
| TCCTAAAGCAAATTGAACAT+GGG | 0.566420 | 7.3:-6525882 | None:intergenic |
| TGTGGGAGTTGGGAACCATA+GGG | 0.576319 | 7.3:+6526088 | MS.gene007040:CDS |
| AGTGAAAGACATGGATGACC+AGG | 0.581108 | 7.3:+6525790 | MS.gene007040:CDS |
| AGCTTCATCATCCTAAAAGA+GGG | 0.592122 | 7.3:+6525371 | MS.gene007040:CDS |
| ATATTAAAGGGGAAGTCCCA+AGG | 0.606798 | 7.3:+6525519 | MS.gene007040:intron |
| CCTAAAGCAAATTGAACATG+GGG | 0.611944 | 7.3:-6525881 | None:intergenic |
| GATTGTGAGTTCAATGCTAG+TGG | 0.613843 | 7.3:+6525310 | MS.gene007040:CDS |
| AAATTTGTCTGTATCCAACT+GGG | 0.615100 | 7.3:+6524887 | MS.gene007040:CDS |
| TTCTCGCTTGAAAACCGTCG+AGG | 0.618839 | 7.3:+6524714 | MS.gene007040:CDS |
| ATCTGGCTTTCTCCGCATTG+GGG | 0.621608 | 7.3:+6525738 | MS.gene007040:CDS |
| GCTGGAAACAGAGAAGCTAA+AGG | 0.633198 | 7.3:+6525970 | MS.gene007040:CDS |
| GACTAGAAAAGTGAAAGACA+TGG | 0.661873 | 7.3:+6525781 | MS.gene007040:CDS |
| ACGTCTACTCCATCCCCAGT+TGG | 0.668696 | 7.3:-6524901 | None:intergenic |
| ATTGTGAGTTCAATGCTAGT+GGG | 0.670016 | 7.3:+6525311 | MS.gene007040:CDS |
| AGGCTCAGAGTAAACCTCGA+CGG | 0.671429 | 7.3:-6524728 | None:intergenic |
| AATTTGTCTGTATCCAACTG+GGG | 0.714292 | 7.3:+6524888 | MS.gene007040:CDS |
| ATAAAGAACTCTCCCCAATG+CGG | 0.724243 | 7.3:-6525750 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAATAAAGTTTATGTCA+AGG | - | chr7.3:6525206-6525225 | None:intergenic | 20.0% |
| !! | AATTTAGATTTGATCTTACT+TGG | + | chr7.3:6525852-6525871 | MS.gene007040:CDS | 20.0% |
| !! | TACGACAAGTTAAAATTTAT+TGG | + | chr7.3:6524797-6524816 | MS.gene007040:intron | 20.0% |
| !!! | TACAGATTTTAGTACTTTAT+AGG | + | chr7.3:6525174-6525193 | MS.gene007040:intron | 20.0% |
| ! | AAATCTGGAAACTATTTCAA+CGG | + | chr7.3:6525565-6525584 | MS.gene007040:CDS | 25.0% |
| ! | AGAGATTTAGATTCTGAATT+AGG | + | chr7.3:6526064-6526083 | MS.gene007040:CDS | 25.0% |
| ! | ATCAGTATGTTTAATAGGTT+CGG | - | chr7.3:6525609-6525628 | None:intergenic | 25.0% |
| ! | GAATAAAAGTAACATCTCAA+TGG | - | chr7.3:6525237-6525256 | None:intergenic | 25.0% |
| ! | TCTGTATCAGTATGTTTAAT+AGG | - | chr7.3:6525614-6525633 | None:intergenic | 25.0% |
| ! | TTCATTCAAATATCATACCA+TGG | - | chr7.3:6524772-6524791 | None:intergenic | 25.0% |
| ! | TTGAAATAGTTTCCAGATTT+GGG | - | chr7.3:6525565-6525584 | None:intergenic | 25.0% |
| ! | TTGTAAACTTAACTGCTAAT+AGG | + | chr7.3:6525069-6525088 | MS.gene007040:intron | 25.0% |
| AAAACTGCTAATATGTCTGA+GGG | + | chr7.3:6524952-6524971 | MS.gene007040:intron | 30.0% | |
| AAAATTTGTCTGTATCCAAC+TGG | + | chr7.3:6524886-6524905 | MS.gene007040:CDS | 30.0% | |
| AAATTTGTCTGTATCCAACT+GGG | + | chr7.3:6524887-6524906 | MS.gene007040:CDS | 30.0% | |
| ATTTCTCAACATTGGATTGT+TGG | - | chr7.3:6524672-6524691 | None:intergenic | 30.0% | |
| CAGTTAAGTTTACAATGAGA+AGG | - | chr7.3:6525064-6525083 | None:intergenic | 30.0% | |
| CCAATGTTGAGAAATTTACA+TGG | + | chr7.3:6524677-6524696 | MS.gene007040:CDS | 30.0% | |
| CCATGTAAATTTCTCAACAT+TGG | - | chr7.3:6524680-6524699 | None:intergenic | 30.0% | |
| CGTCTACTTATCAATTTACT+TGG | + | chr7.3:6524921-6524940 | MS.gene007040:CDS | 30.0% | |
| CTACTTATCAATTTACTTGG+AGG | + | chr7.3:6524924-6524943 | MS.gene007040:CDS | 30.0% | |
| GTTGAAATAGTTTCCAGATT+TGG | - | chr7.3:6525566-6525585 | None:intergenic | 30.0% | |
| TAACTGTGTTCCCTAAAATT+TGG | + | chr7.3:6525482-6525501 | MS.gene007040:intron | 30.0% | |
| TAGATTCTGAATTAGGATGT+GGG | + | chr7.3:6526071-6526090 | MS.gene007040:CDS | 30.0% | |
| TCCTAAAGCAAATTGAACAT+GGG | - | chr7.3:6525885-6525904 | None:intergenic | 30.0% | |
| TGTATGAATTTGCCAGATTT+CGG | + | chr7.3:6525286-6525305 | MS.gene007040:intron | 30.0% | |
| TGTTGAGAAATTTACATGGA+AGG | + | chr7.3:6524681-6524700 | MS.gene007040:CDS | 30.0% | |
| TTAGATTCTGAATTAGGATG+TGG | + | chr7.3:6526070-6526089 | MS.gene007040:CDS | 30.0% | |
| TTCCTAAAGCAAATTGAACA+TGG | - | chr7.3:6525886-6525905 | None:intergenic | 30.0% | |
| TTTAGGTATCCACTTGAAAA+AGG | - | chr7.3:6525098-6525117 | None:intergenic | 30.0% | |
| ! | CAGAAATCTTGTGGATTTTT+AGG | - | chr7.3:6525115-6525134 | None:intergenic | 30.0% |
| ! | TGTTGGACTTCCAAATTTTA+GGG | - | chr7.3:6525495-6525514 | None:intergenic | 30.0% |
| ! | TTGTTGGACTTCCAAATTTT+AGG | - | chr7.3:6525496-6525515 | None:intergenic | 30.0% |
| !! | AAAGACTTGTTGAAAGCAAA+AGG | + | chr7.3:6526031-6526050 | MS.gene007040:CDS | 30.0% |
| !! | ATATGCTATGGTTTTGCTTT+AGG | + | chr7.3:6524863-6524882 | MS.gene007040:intron | 30.0% |
| !!! | TAGTGTGTTTTGATATGCTA+TGG | + | chr7.3:6524851-6524870 | MS.gene007040:intron | 30.0% |
| AAATTGCGACTTCTCTTTGA+CGG | - | chr7.3:6525713-6525732 | None:intergenic | 35.0% | |
| AAGCTTCATCATCCTAAAAG+AGG | + | chr7.3:6525370-6525389 | MS.gene007040:CDS | 35.0% | |
| AATTTGTCTGTATCCAACTG+GGG | + | chr7.3:6524888-6524907 | MS.gene007040:CDS | 35.0% | |
| ACCAACAAGACAATTACAGA+AGG | + | chr7.3:6525024-6525043 | MS.gene007040:intron | 35.0% | |
| ACCTTCTGTAATTGTCTTGT+TGG | - | chr7.3:6525028-6525047 | None:intergenic | 35.0% | |
| AGAGAAGCTAAAGGCAAAAT+TGG | + | chr7.3:6525979-6525998 | MS.gene007040:CDS | 35.0% | |
| AGCTTCATCATCCTAAAAGA+GGG | + | chr7.3:6525371-6525390 | MS.gene007040:CDS | 35.0% | |
| AGTCCAACAAGCCATATTAA+AGG | + | chr7.3:6525506-6525525 | MS.gene007040:intron | 35.0% | |
| ATCCACAAGATTTCTGTCAA+TGG | + | chr7.3:6525119-6525138 | MS.gene007040:CDS | 35.0% | |
| ATCCATAAGCACTTCAATTG+AGG | - | chr7.3:6525648-6525667 | None:intergenic | 35.0% | |
| ATTGTGAGTTCAATGCTAGT+GGG | + | chr7.3:6525311-6525330 | MS.gene007040:CDS | 35.0% | |
| CAAGATTTCTGTCAATGGTA+TGG | + | chr7.3:6525124-6525143 | MS.gene007040:intron | 35.0% | |
| CCTAAAGCAAATTGAACATG+GGG | - | chr7.3:6525884-6525903 | None:intergenic | 35.0% | |
| GAAAACTGCTAATATGTCTG+AGG | + | chr7.3:6524951-6524970 | MS.gene007040:intron | 35.0% | |
| GAACTACAGGAAGTAAGATT+TGG | + | chr7.3:6525680-6525699 | MS.gene007040:CDS | 35.0% | |
| GACTAGAAAAGTGAAAGACA+TGG | + | chr7.3:6525781-6525800 | MS.gene007040:CDS | 35.0% | |
| GTCCAACAAGCCATATTAAA+GGG | + | chr7.3:6525507-6525526 | MS.gene007040:intron | 35.0% | |
| TACCATTGACAGAAATCTTG+TGG | - | chr7.3:6525124-6525143 | None:intergenic | 35.0% | |
| TCCAACAAGCCATATTAAAG+GGG | + | chr7.3:6525508-6525527 | MS.gene007040:intron | 35.0% | |
| TCCATAAGCACTTCAATTGA+GGG | - | chr7.3:6525647-6525666 | None:intergenic | 35.0% | |
| TGAAAAGCTGAAAGAGAATG+TGG | + | chr7.3:6525937-6525956 | MS.gene007040:CDS | 35.0% | |
| ! | TTCACAACAAACCCTCTTTT+AGG | - | chr7.3:6525385-6525404 | None:intergenic | 35.0% |
| !! | AAGTCGCAATTTTAACGATC+TGG | + | chr7.3:6525721-6525740 | MS.gene007040:CDS | 35.0% |
| !! | GGATCTTCAAGTTTTATGGA+AGG | + | chr7.3:6525820-6525839 | MS.gene007040:CDS | 35.0% |
| !! | GTGAGGATCTTCAAGTTTTA+TGG | + | chr7.3:6525816-6525835 | MS.gene007040:CDS | 35.0% |
| !! | TAAAAGAGGGTTTGTTGTGA+AGG | + | chr7.3:6525384-6525403 | MS.gene007040:CDS | 35.0% |
| !!! | AATAGGCTTCCTTTTTCAAG+TGG | + | chr7.3:6525086-6525105 | MS.gene007040:intron | 35.0% |
| !!! | CTTTCACTTTTCTAGTCTTG+AGG | - | chr7.3:6525778-6525797 | None:intergenic | 35.0% |
| AACTCACAATCACCGAAATC+TGG | - | chr7.3:6525301-6525320 | None:intergenic | 40.0% | |
| AATTGCGACTTCTCTTTGAC+GGG | - | chr7.3:6525712-6525731 | None:intergenic | 40.0% | |
| ATAAAGAACTCTCCCCAATG+CGG | - | chr7.3:6525753-6525772 | None:intergenic | 40.0% | |
| ATATTAAAGGGGAAGTCCCA+AGG | + | chr7.3:6525519-6525538 | MS.gene007040:intron | 40.0% | |
| GATTGTGAGTTCAATGCTAG+TGG | + | chr7.3:6525310-6525329 | MS.gene007040:CDS | 40.0% | |
| GTGAAGGATGCTTGTATTGT+TGG | + | chr7.3:6525400-6525419 | MS.gene007040:CDS | 40.0% | |
| TGAATTAGGATGTGGGAGTT+GGG | + | chr7.3:6526078-6526097 | MS.gene007040:CDS | 40.0% | |
| TTGGGACTTCCCCTTTAATA+TGG | - | chr7.3:6525520-6525539 | None:intergenic | 40.0% | |
| TTTCAGCAGTGTAGAACTAC+AGG | + | chr7.3:6525667-6525686 | MS.gene007040:CDS | 40.0% | |
| ! | ACCCTCAATTGAAGTGCTTA+TGG | + | chr7.3:6525643-6525662 | MS.gene007040:CDS | 40.0% |
| ! | CCCCATGTTCAATTTGCTTT+AGG | + | chr7.3:6525881-6525900 | MS.gene007040:CDS | 40.0% |
| ! | TCCCCTTTAATATGGCTTGT+TGG | - | chr7.3:6525512-6525531 | None:intergenic | 40.0% |
| AATGCTAGTGGGAGTAGTTG+CGG | + | chr7.3:6525322-6525341 | MS.gene007040:CDS | 45.0% | |
| AGTGAAAGACATGGATGACC+AGG | + | chr7.3:6525790-6525809 | MS.gene007040:CDS | 45.0% | |
| CTGAATTAGGATGTGGGAGT+TGG | + | chr7.3:6526077-6526096 | MS.gene007040:CDS | 45.0% | |
| GCTGGAAACAGAGAAGCTAA+AGG | + | chr7.3:6525970-6525989 | MS.gene007040:CDS | 45.0% | |
| ! | TACTCTGAGCCTTTTGTTGC+AGG | + | chr7.3:6524739-6524758 | MS.gene007040:CDS | 45.0% |
| AGATTTGGGCCTTGAACTCC+AGG | - | chr7.3:6525551-6525570 | None:intergenic | 50.0% | |
| AGGCCAAATCCTGGAGTTCA+AGG | + | chr7.3:6525539-6525558 | MS.gene007040:CDS | 50.0% | |
| AGGCTCAGAGTAAACCTCGA+CGG | - | chr7.3:6524731-6524750 | None:intergenic | 50.0% | |
| CTTGAAGATCCTCACAAGCC+TGG | - | chr7.3:6525811-6525830 | None:intergenic | 50.0% | |
| GAATGTGGTAGCTCTTGAGC+TGG | + | chr7.3:6525952-6525971 | MS.gene007040:CDS | 50.0% | |
| GGCTGCTGCTGAGGTAAATA+TGG | + | chr7.3:6526000-6526019 | MS.gene007040:CDS | 50.0% | |
| TGAACTCCAGGATTTGGCCT+TGG | - | chr7.3:6525539-6525558 | None:intergenic | 50.0% | |
| TGGAGTTCAAGGCCCAAATC+TGG | + | chr7.3:6525550-6525569 | MS.gene007040:CDS | 50.0% | |
| TGTCTGTATCCAACTGGGGA+TGG | + | chr7.3:6524892-6524911 | MS.gene007040:CDS | 50.0% | |
| TTCTCGCTTGAAAACCGTCG+AGG | + | chr7.3:6524714-6524733 | MS.gene007040:CDS | 50.0% | |
| ! | GAACTCCAGGATTTGGCCTT+GGG | - | chr7.3:6525538-6525557 | None:intergenic | 50.0% |
| ! | TCTGAGCCTTTTGTTGCAGG+CGG | + | chr7.3:6524742-6524761 | MS.gene007040:CDS | 50.0% |
| !! | ATCTGGCTTTCTCCGCATTG+GGG | + | chr7.3:6525738-6525757 | MS.gene007040:CDS | 50.0% |
| !! | GATCTGGCTTTCTCCGCATT+GGG | + | chr7.3:6525737-6525756 | MS.gene007040:CDS | 50.0% |
| ACGTCTACTCCATCCCCAGT+TGG | - | chr7.3:6524904-6524923 | None:intergenic | 55.0% | |
| CATGGATGACCAGGCTTGTG+AGG | + | chr7.3:6525799-6525818 | MS.gene007040:CDS | 55.0% | |
| GAAGTCCCAAGGCCAAATCC+TGG | + | chr7.3:6525530-6525549 | MS.gene007040:CDS | 55.0% | |
| GGATAGCCGCCTGCAACAAA+AGG | - | chr7.3:6524751-6524770 | None:intergenic | 55.0% | |
| GGCAAAATTGGCTGCTGCTG+AGG | + | chr7.3:6525991-6526010 | MS.gene007040:CDS | 55.0% | |
| GGGCCTTGAACTCCAGGATT+TGG | - | chr7.3:6525545-6525564 | None:intergenic | 55.0% | |
| TTGTTGCAGGCGGCTATCCA+TGG | + | chr7.3:6524752-6524771 | MS.gene007040:CDS | 55.0% | |
| !! | CGATCTGGCTTTCTCCGCAT+TGG | + | chr7.3:6525736-6525755 | MS.gene007040:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 6524664 | 6526108 | 6524664 | ID=MS.gene007040 |
| chr7.3 | mRNA | 6524664 | 6526108 | 6524664 | ID=MS.gene007040.t1;Parent=MS.gene007040 |
| chr7.3 | exon | 6524664 | 6524773 | 6524664 | ID=MS.gene007040.t1.exon1;Parent=MS.gene007040.t1 |
| chr7.3 | CDS | 6524664 | 6524773 | 6524664 | ID=cds.MS.gene007040.t1;Parent=MS.gene007040.t1 |
| chr7.3 | exon | 6524885 | 6524965 | 6524885 | ID=MS.gene007040.t1.exon2;Parent=MS.gene007040.t1 |
| chr7.3 | CDS | 6524885 | 6524965 | 6524885 | ID=cds.MS.gene007040.t1;Parent=MS.gene007040.t1 |
| chr7.3 | exon | 6525091 | 6525140 | 6525091 | ID=MS.gene007040.t1.exon3;Parent=MS.gene007040.t1 |
| chr7.3 | CDS | 6525091 | 6525140 | 6525091 | ID=cds.MS.gene007040.t1;Parent=MS.gene007040.t1 |
| chr7.3 | exon | 6525302 | 6525439 | 6525302 | ID=MS.gene007040.t1.exon4;Parent=MS.gene007040.t1 |
| chr7.3 | CDS | 6525302 | 6525439 | 6525302 | ID=cds.MS.gene007040.t1;Parent=MS.gene007040.t1 |
| chr7.3 | exon | 6525528 | 6526108 | 6525528 | ID=MS.gene007040.t1.exon5;Parent=MS.gene007040.t1 |
| chr7.3 | CDS | 6525528 | 6526108 | 6525528 | ID=cds.MS.gene007040.t1;Parent=MS.gene007040.t1 |
| Gene Sequence |
| Protein sequence |
