Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030034.t1 | XP_003617426.1 | 90.7 | 550 | 50 | 1 | 1 | 549 | 1 | 550 | 8.90E-273 | 949.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030034.t1 | Q9FPT1 | 57.0 | 263 | 105 | 5 | 2 | 260 | 562 | 820 | 4.1e-69 | 263.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030034.t1 | G7KD57 | 90.7 | 550 | 50 | 1 | 1 | 549 | 1 | 550 | 6.4e-273 | 949.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030034.t1 | MTR_5g091430 | 90.727 | 550 | 50 | 1 | 1 | 549 | 1 | 550 | 0.0 | 1003 |
| MS.gene030034.t1 | MTR_5g091450 | 62.645 | 605 | 164 | 7 | 4 | 549 | 191 | 792 | 0.0 | 687 |
| MS.gene030034.t1 | MTR_5g091180 | 63.238 | 525 | 165 | 7 | 2 | 522 | 202 | 702 | 0.0 | 580 |
| MS.gene030034.t1 | MTR_5g091410 | 57.895 | 551 | 199 | 6 | 1 | 549 | 30 | 549 | 0.0 | 575 |
| MS.gene030034.t1 | MTR_5g091530 | 60.069 | 288 | 91 | 3 | 4 | 289 | 119 | 384 | 2.22e-105 | 322 |
| MS.gene030034.t1 | MTR_5g091550 | 56.169 | 308 | 122 | 4 | 3 | 301 | 180 | 483 | 7.93e-103 | 318 |
| MS.gene030034.t1 | MTR_5g091550 | 56.169 | 308 | 122 | 4 | 3 | 301 | 175 | 478 | 1.12e-102 | 318 |
| MS.gene030034.t1 | MTR_5g086700 | 65.000 | 260 | 87 | 2 | 4 | 260 | 568 | 826 | 1.37e-99 | 325 |
| MS.gene030034.t1 | MTR_5g086700 | 65.000 | 260 | 87 | 2 | 4 | 260 | 568 | 826 | 1.49e-99 | 325 |
| MS.gene030034.t1 | MTR_3g079840 | 61.538 | 260 | 96 | 2 | 4 | 260 | 564 | 822 | 2.59e-95 | 314 |
| MS.gene030034.t1 | MTR_3g079840 | 61.538 | 260 | 96 | 2 | 4 | 260 | 563 | 821 | 2.66e-95 | 314 |
| MS.gene030034.t1 | MTR_1g041240 | 55.000 | 260 | 112 | 3 | 5 | 260 | 565 | 823 | 1.22e-79 | 271 |
| MS.gene030034.t1 | MTR_1g041240 | 55.000 | 260 | 112 | 3 | 5 | 260 | 566 | 824 | 1.35e-79 | 271 |
| MS.gene030034.t1 | MTR_1g041240 | 55.000 | 260 | 112 | 3 | 5 | 260 | 564 | 822 | 1.37e-79 | 271 |
| MS.gene030034.t1 | MTR_5g091460 | 79.545 | 44 | 9 | 0 | 1 | 44 | 1 | 44 | 1.05e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030034.t1 | AT5G06600 | 62.844 | 218 | 77 | 2 | 2 | 216 | 562 | 778 | 1.83e-79 | 269 |
| MS.gene030034.t1 | AT5G06600 | 62.844 | 218 | 77 | 2 | 2 | 216 | 562 | 778 | 7.36e-79 | 269 |
| MS.gene030034.t1 | AT5G06600 | 62.844 | 218 | 77 | 2 | 2 | 216 | 561 | 777 | 7.53e-79 | 269 |
| MS.gene030034.t1 | AT3G11910 | 56.540 | 237 | 99 | 2 | 2 | 235 | 560 | 795 | 6.44e-78 | 266 |
| MS.gene030034.t1 | AT3G11910 | 56.540 | 237 | 99 | 2 | 2 | 235 | 560 | 795 | 6.44e-78 | 266 |
| MS.gene030034.t1 | AT3G11910 | 56.540 | 237 | 99 | 2 | 2 | 235 | 559 | 794 | 6.65e-78 | 266 |
| MS.gene030034.t1 | AT3G11910 | 56.540 | 237 | 99 | 2 | 2 | 235 | 559 | 794 | 6.65e-78 | 266 |
Find 82 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCAAGGTTAAATAAAT+TGG | 0.166835 | 5.2:-77356117 | MS.gene030034:CDS |
| TTCCAATGATTCTTCATCTT+TGG | 0.180925 | 5.2:+77355339 | None:intergenic |
| TCTTCAATGCTTCATTATTT+TGG | 0.190214 | 5.2:+77354789 | None:intergenic |
| TGACGAATTAAAATTGTTTC+TGG | 0.191505 | 5.2:-77356473 | MS.gene030034:CDS |
| CTTCCAAGAGCAACTTCTTA+TGG | 0.228201 | 5.2:-77355047 | MS.gene030034:CDS |
| TAGCTCAATTCCAGCGCTTT+TGG | 0.241563 | 5.2:-77356999 | MS.gene030034:CDS |
| CCACGAATGCAGTTAGAAAA+TGG | 0.246637 | 5.2:-77355603 | MS.gene030034:intron |
| AATGTTAATTCCTTCTTAAC+TGG | 0.258356 | 5.2:+77355713 | None:intergenic |
| ACAAGGCGACCGGGCTAAAA+TGG | 0.260074 | 5.2:-77354657 | MS.gene030034:CDS |
| GAGGCATTACCCTCATTATT+TGG | 0.263040 | 5.2:+77354477 | None:intergenic |
| TGATACCTTGAAAACGTTAA+AGG | 0.272288 | 5.2:+77357455 | None:intergenic |
| AGTAAGTACATTAATCAAAA+TGG | 0.294834 | 5.2:+77354455 | None:intergenic |
| GAAGATCTTGCAGAACAAAT+TGG | 0.323182 | 5.2:-77357546 | MS.gene030034:CDS |
| CTCTTATTGAATGGCGTAAT+GGG | 0.331630 | 5.2:+77356335 | None:intergenic |
| ATTAAAATTGTTTCTGGAAG+TGG | 0.348069 | 5.2:-77356467 | MS.gene030034:CDS |
| AACATGGTTGCTATAGAGTT+TGG | 0.361077 | 5.2:-77357027 | MS.gene030034:CDS |
| CCAATTCAGTTTGTGCCTCC+AGG | 0.376254 | 5.2:+77354519 | None:intergenic |
| GCCAACACTTTAAAATTTGT+CGG | 0.379592 | 5.2:-77355208 | MS.gene030034:CDS |
| CCTGGAGGCACAAACTGAAT+TGG | 0.380178 | 5.2:-77354519 | MS.gene030034:CDS |
| ATGTGTGTCAAAGGCCGATA+TGG | 0.385971 | 5.2:+77356943 | None:intergenic |
| ACTGGCAAACGCATGACATT+TGG | 0.386148 | 5.2:+77355731 | None:intergenic |
| ATCCAAAGATGAAGAATCAT+TGG | 0.396304 | 5.2:-77355341 | MS.gene030034:CDS |
| CAAGAGAGTTGCGTTGTGTT+TGG | 0.402884 | 5.2:+77354720 | None:intergenic |
| AGAAGTTGCTCTTGGAAGTT+GGG | 0.405096 | 5.2:+77355052 | None:intergenic |
| TCACTTGTACACTATGATAA+AGG | 0.412677 | 5.2:-77357696 | MS.gene030034:intron |
| GGATAAGCCATCAGAAATCT+TGG | 0.414878 | 5.2:-77356135 | MS.gene030034:CDS |
| ATCTTTGGATTCTATATCTG+AGG | 0.416621 | 5.2:+77355354 | None:intergenic |
| AAAAGTTCAATCTCTTCATC+AGG | 0.421693 | 5.2:+77356083 | None:intergenic |
| ACTGTGTTGAAACTAACTTT+AGG | 0.426782 | 5.2:+77354965 | None:intergenic |
| CCTCGTAAAGCTCTTTCAAT+TGG | 0.427504 | 5.2:+77356497 | None:intergenic |
| ATTCCATAAGAAGTTGCTCT+TGG | 0.436863 | 5.2:+77355044 | None:intergenic |
| AATGAAAGCTATTGATTGCC+AGG | 0.443087 | 5.2:-77355499 | MS.gene030034:intron |
| AGAATGAAGGCACATCAAAA+AGG | 0.443323 | 5.2:+77355526 | None:intergenic |
| AAGAAGTTGCTCTTGGAAGT+TGG | 0.443347 | 5.2:+77355051 | None:intergenic |
| TAATCATTGCTCTTATTGAA+TGG | 0.444221 | 5.2:+77356326 | None:intergenic |
| CCCTTTGGTGGCAGTTATGT+TGG | 0.447155 | 5.2:-77356179 | MS.gene030034:intron |
| GCTCTTATTGAATGGCGTAA+TGG | 0.454463 | 5.2:+77356334 | None:intergenic |
| CATGCGTTTGCCAGTTAAGA+AGG | 0.456247 | 5.2:-77355723 | MS.gene030034:CDS |
| AGCAACTTCTTATGGAATTG+AGG | 0.457005 | 5.2:-77355039 | MS.gene030034:CDS |
| GCAACTTCTTATGGAATTGA+GGG | 0.458233 | 5.2:-77355038 | MS.gene030034:CDS |
| GCAAGGTTAAATAAATTGGC+TGG | 0.470203 | 5.2:-77356113 | MS.gene030034:CDS |
| CAACACTGACTTGTTCTAGT+TGG | 0.488324 | 5.2:+77354900 | None:intergenic |
| CATTACCCTCATTATTTGGT+AGG | 0.488902 | 5.2:+77354481 | None:intergenic |
| TTGGTGGCAGTTATGTTGGA+AGG | 0.494286 | 5.2:-77356175 | MS.gene030034:intron |
| TCTATATCTGAGGGCCGAAA+AGG | 0.497785 | 5.2:+77355364 | None:intergenic |
| GCTGGTACCTTTAGCATGAG+TGG | 0.499474 | 5.2:+77355234 | None:intergenic |
| GAGAGTTGCGTTGTGTTTGG+TGG | 0.502859 | 5.2:+77354723 | None:intergenic |
| GCCGATATGGTCGATATGTA+TGG | 0.503263 | 5.2:+77356956 | None:intergenic |
| AAGGCTTATTGTGAACTGTA+AGG | 0.503460 | 5.2:-77356156 | MS.gene030034:CDS |
| AAGCTTATGCTATTGATACT+AGG | 0.505022 | 5.2:-77355560 | MS.gene030034:CDS |
| AACCTTGCCAAGATTTCTGA+TGG | 0.506298 | 5.2:+77356128 | None:intergenic |
| TTTGATCATCAGCGTGGCGA+TGG | 0.512301 | 5.2:+77354570 | None:intergenic |
| TGAAGCTCATCAGTCAAAAG+TGG | 0.513154 | 5.2:-77355266 | MS.gene030034:CDS |
| ACCATACATATCGACCATAT+CGG | 0.517591 | 5.2:-77356957 | MS.gene030034:CDS |
| GCTTCCTCGATGTGTGTCAA+AGG | 0.520515 | 5.2:+77356934 | None:intergenic |
| TCTGGAAGTGGAGCATGAAC+TGG | 0.522119 | 5.2:-77356455 | MS.gene030034:intron |
| AAAATATTATAGCTGAAGAA+AGG | 0.525519 | 5.2:-77355306 | MS.gene030034:CDS |
| AAATAATGAAGCATTGAAGA+AGG | 0.539170 | 5.2:-77354786 | MS.gene030034:CDS |
| AGAAGGCCTACCAAATAATG+AGG | 0.539514 | 5.2:-77354487 | MS.gene030034:CDS |
| AAGTGTTGAAGATAAAATCC+TGG | 0.540552 | 5.2:-77354537 | MS.gene030034:CDS |
| TCTTTGGATTCTATATCTGA+GGG | 0.540937 | 5.2:+77355355 | None:intergenic |
| AGTTAGTTTCAACACAGTCA+TGG | 0.546034 | 5.2:-77354960 | MS.gene030034:CDS |
| ATAGAGACCACTCATGCTAA+AGG | 0.550479 | 5.2:-77355241 | MS.gene030034:CDS |
| ATGATAGACGAGGATGTCAT+TGG | 0.551670 | 5.2:-77355160 | MS.gene030034:CDS |
| ATCGACAAAGTGTTATCAGA+AGG | 0.564630 | 5.2:-77355133 | MS.gene030034:CDS |
| ATCCTGAAAAGAAGAAGCTA+AGG | 0.565994 | 5.2:-77356277 | MS.gene030034:intron |
| ACCTTGTCAACAACATTGCG+AGG | 0.587538 | 5.2:-77354871 | MS.gene030034:CDS |
| ATTAACATTTCAAGAAAGTG+AGG | 0.591223 | 5.2:-77355699 | MS.gene030034:intron |
| ATATCTGAGGGCCGAAAAGG+AGG | 0.595378 | 5.2:+77355367 | None:intergenic |
| TCCTCGCAATGTTGTTGACA+AGG | 0.602106 | 5.2:+77354870 | None:intergenic |
| TGAATTGGAAAGTCATGAGA+AGG | 0.602939 | 5.2:-77354504 | MS.gene030034:CDS |
| TAGTAGACTTTGACAAAGTG+AGG | 0.605788 | 5.2:-77357503 | MS.gene030034:CDS |
| TCGACAAAGTGTTATCAGAA+GGG | 0.625778 | 5.2:-77355132 | MS.gene030034:CDS |
| AAGTACATTAATCAAAATGG+AGG | 0.631561 | 5.2:+77354458 | None:intergenic |
| AGCCATCAGAAATCTTGGCA+AGG | 0.646518 | 5.2:-77356130 | MS.gene030034:CDS |
| GAAGGCCTACCAAATAATGA+GGG | 0.655305 | 5.2:-77354486 | MS.gene030034:CDS |
| CCAATTGAAAGAGCTTTACG+AGG | 0.669698 | 5.2:-77356497 | MS.gene030034:CDS |
| AATTGATGCTATGATAGACG+AGG | 0.695057 | 5.2:-77355170 | MS.gene030034:CDS |
| ACTTGATTTGATCATCAGCG+TGG | 0.708780 | 5.2:+77354564 | None:intergenic |
| GTTGTGTTTGGTGGTCTGTG+AGG | 0.712373 | 5.2:+77354732 | None:intergenic |
| TGTTGAAGATAAAATCCTGG+AGG | 0.717731 | 5.2:-77354534 | MS.gene030034:CDS |
| TCGGCCTTTGACACACATCG+AGG | 0.738247 | 5.2:-77356938 | MS.gene030034:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAATCAATATAAAAAA+AGG | + | chr5.2:77355524-77355543 | None:intergenic | 10.0% |
| !! | AAACAATCAATATAAAAAAA+GGG | + | chr5.2:77355523-77355542 | None:intergenic | 10.0% |
| !!! | TTTTTTATATTGATTGTTTT+TGG | - | chr5.2:77355524-77355543 | MS.gene030034:CDS | 10.0% |
| !! | AAAATATTATAGCTGAAGAA+AGG | - | chr5.2:77356870-77356889 | MS.gene030034:intron | 20.0% |
| !! | AAAATGAATCTTGTTAATTG+AGG | - | chr5.2:77354770-77354789 | MS.gene030034:CDS | 20.0% |
| !! | ATGAAATTAGAGTATGTAAT+TGG | + | chr5.2:77354876-77354895 | None:intergenic | 20.0% |
| !! | ATTAAGGGAAAAAAAACTAT+GGG | + | chr5.2:77355552-77355571 | None:intergenic | 20.0% |
| !! | GATAACATATAATACTTCTT+AGG | - | chr5.2:77354596-77354615 | MS.gene030034:CDS | 20.0% |
| !! | TCAACATTAAACATAAATGA+GGG | + | chr5.2:77355409-77355428 | None:intergenic | 20.0% |
| !! | TGAAATTAGAGTATGTAATT+GGG | + | chr5.2:77354875-77354894 | None:intergenic | 20.0% |
| !! | TTCAACATTAAACATAAATG+AGG | + | chr5.2:77355410-77355429 | None:intergenic | 20.0% |
| !!! | AATTTCATATTTTCTTGCAA+CGG | - | chr5.2:77354888-77354907 | MS.gene030034:CDS | 20.0% |
| !!! | GTCAATTTTTCATATGTATT+TGG | + | chr5.2:77354845-77354864 | None:intergenic | 20.0% |
| !!! | TTGGTTGAAAATTTTAAACA+AGG | - | chr5.2:77357181-77357200 | MS.gene030034:intron | 20.0% |
| !!! | TTTGATTTTAACATATGTTG+AGG | - | chr5.2:77355939-77355958 | MS.gene030034:intron | 20.0% |
| ! | AAAAATCACAATGCTTTAGT+TGG | - | chr5.2:77355028-77355047 | MS.gene030034:CDS | 25.0% |
| ! | AACATATAATACTTCTTAGG+TGG | - | chr5.2:77354599-77354618 | MS.gene030034:CDS | 25.0% |
| ! | AATACATATGATGTCAACTA+TGG | + | chr5.2:77355976-77355995 | None:intergenic | 25.0% |
| ! | AATCTTAATAACGAAGCATA+TGG | + | chr5.2:77356211-77356230 | None:intergenic | 25.0% |
| ! | AATGTTAATTCCTTCTTAAC+TGG | + | chr5.2:77356466-77356485 | None:intergenic | 25.0% |
| ! | AGAAACAAGATTAGAATAAC+TGG | + | chr5.2:77356750-77356769 | None:intergenic | 25.0% |
| ! | ATAAAATATGAAGCTTGAAG+GGG | + | chr5.2:77355326-77355345 | None:intergenic | 25.0% |
| ! | ATATGCTTCGTTATTAAGAT+TGG | - | chr5.2:77356210-77356229 | MS.gene030034:intron | 25.0% |
| ! | ATATGTATTTGGCACTAATT+TGG | + | chr5.2:77354834-77354853 | None:intergenic | 25.0% |
| ! | ATTAACATTTCAAGAAAGTG+AGG | - | chr5.2:77356477-77356496 | MS.gene030034:CDS | 25.0% |
| ! | CAACATTAAACATAAATGAG+GGG | + | chr5.2:77355408-77355427 | None:intergenic | 25.0% |
| ! | CATAAAATATGAAGCTTGAA+GGG | + | chr5.2:77355327-77355346 | None:intergenic | 25.0% |
| ! | CATTAAGGGAAAAAAAACTA+TGG | + | chr5.2:77355553-77355572 | None:intergenic | 25.0% |
| ! | GAAATTAGAGTATGTAATTG+GGG | + | chr5.2:77354874-77354893 | None:intergenic | 25.0% |
| ! | GACGAACTTCATTATTATAT+AGG | - | chr5.2:77355810-77355829 | MS.gene030034:intron | 25.0% |
| ! | TAAAATAACTGTTTCCTATG+AGG | + | chr5.2:77354990-77355009 | None:intergenic | 25.0% |
| ! | TAATAATGAAGTTCGTCAAA+AGG | + | chr5.2:77355807-77355826 | None:intergenic | 25.0% |
| ! | TAATCATTGCTCTTATTGAA+TGG | + | chr5.2:77355853-77355872 | None:intergenic | 25.0% |
| ! | TATGCTTCGTTATTAAGATT+GGG | - | chr5.2:77356211-77356230 | MS.gene030034:intron | 25.0% |
| ! | TCATAAAATATGAAGCTTGA+AGG | + | chr5.2:77355328-77355347 | None:intergenic | 25.0% |
| ! | TGACGAATTAAAATTGTTTC+TGG | - | chr5.2:77355703-77355722 | MS.gene030034:CDS | 25.0% |
| ! | TTAACATATGTTGAGGTAAA+AGG | - | chr5.2:77355946-77355965 | MS.gene030034:intron | 25.0% |
| !! | GTTATTCTAATCTTGTTTCT+AGG | - | chr5.2:77356750-77356769 | MS.gene030034:intron | 25.0% |
| !! | TCTTCAATGCTTCATTATTT+TGG | + | chr5.2:77357390-77357409 | None:intergenic | 25.0% |
| !!! | AAATAATGAAGCATTGAAGA+AGG | - | chr5.2:77357390-77357409 | MS.gene030034:intron | 25.0% |
| !!! | ATTAAAATTGTTTCTGGAAG+TGG | - | chr5.2:77355709-77355728 | MS.gene030034:CDS | 25.0% |
| !!! | GAAGTTGTATACTATTTTGA+TGG | - | chr5.2:77355759-77355778 | MS.gene030034:intron | 25.0% |
| !!! | TTTTATGACTTTTTCATCTC+TGG | - | chr5.2:77355340-77355359 | MS.gene030034:CDS | 25.0% |
| AAAAGTTCAATCTCTTCATC+AGG | + | chr5.2:77356096-77356115 | None:intergenic | 30.0% | |
| AAACCAATGAAACAGTAACT+TGG | + | chr5.2:77356535-77356554 | None:intergenic | 30.0% | |
| AACCTCAAAAAGAAAATACC+TGG | + | chr5.2:77356698-77356717 | None:intergenic | 30.0% | |
| AAGCTTATGCTATTGATACT+AGG | - | chr5.2:77356616-77356635 | MS.gene030034:intron | 30.0% | |
| AATTAACCAGCATGTCTTAA+AGG | + | chr5.2:77354924-77354943 | None:intergenic | 30.0% | |
| ACATCATATGTATTTCCCTT+TGG | - | chr5.2:77355982-77356001 | MS.gene030034:intron | 30.0% | |
| ACTGTGTTGAAACTAACTTT+AGG | + | chr5.2:77357214-77357233 | None:intergenic | 30.0% | |
| ACTTCACATCATAGTGAAAT+TGG | + | chr5.2:77355622-77355641 | None:intergenic | 30.0% | |
| ATCATAGTGAAATTGGTATG+TGG | + | chr5.2:77355615-77355634 | None:intergenic | 30.0% | |
| ATCCAAAGATGAAGAATCAT+TGG | - | chr5.2:77356835-77356854 | MS.gene030034:intron | 30.0% | |
| ATCTTTGGATTCTATATCTG+AGG | + | chr5.2:77356825-77356844 | None:intergenic | 30.0% | |
| ATGACCAACAAGAACAAAAA+GGG | - | chr5.2:77356333-77356352 | MS.gene030034:CDS | 30.0% | |
| CACAAACAACACAAAATTCT+AGG | + | chr5.2:77354523-77354542 | None:intergenic | 30.0% | |
| CTTGGCAAGGTTAAATAAAT+TGG | - | chr5.2:77356059-77356078 | MS.gene030034:intron | 30.0% | |
| GTGATGTGATATATAGAACA+TGG | - | chr5.2:77355133-77355152 | MS.gene030034:CDS | 30.0% | |
| TAAAATATGAAGCTTGAAGG+GGG | + | chr5.2:77355325-77355344 | None:intergenic | 30.0% | |
| TATGACCAACAAGAACAAAA+AGG | - | chr5.2:77356332-77356351 | MS.gene030034:CDS | 30.0% | |
| TCACTTGTACACTATGATAA+AGG | - | chr5.2:77354480-77354499 | MS.gene030034:CDS | 30.0% | |
| TCAGCAGAAAACTAAAAAGT+CGG | + | chr5.2:77356138-77356157 | None:intergenic | 30.0% | |
| TCTTTGGATTCTATATCTGA+GGG | + | chr5.2:77356824-77356843 | None:intergenic | 30.0% | |
| TGATACCTTGAAAACGTTAA+AGG | + | chr5.2:77354724-77354743 | None:intergenic | 30.0% | |
| TGTTTAGTAAATATGCTTGC+TGG | - | chr5.2:77356255-77356274 | MS.gene030034:intron | 30.0% | |
| TTCCAATGATTCTTCATCTT+TGG | + | chr5.2:77356840-77356859 | None:intergenic | 30.0% | |
| TTTATTTCCTGCACAACAAT+AGG | + | chr5.2:77356418-77356437 | None:intergenic | 30.0% | |
| ! | ATCAAGCTGTTACTTAATTG+CGG | - | chr5.2:77355448-77355467 | MS.gene030034:intron | 30.0% |
| ! | TCTCTGAAAATTTATCATGC+TGG | - | chr5.2:77356307-77356326 | MS.gene030034:CDS | 30.0% |
| ! | TCTTGTGGTTTTTATGCTTT+TGG | - | chr5.2:77355077-77355096 | MS.gene030034:CDS | 30.0% |
| ! | TGAAGAGATTGAACTTTTTG+AGG | - | chr5.2:77356098-77356117 | MS.gene030034:CDS | 30.0% |
| !! | AAGTGTTGAAGATAAAATCC+TGG | - | chr5.2:77357639-77357658 | MS.gene030034:intron | 30.0% |
| !! | GCCAACACTTTAAAATTTGT+CGG | - | chr5.2:77356968-77356987 | MS.gene030034:CDS | 30.0% |
| !! | GCTTTCATTTTCAAGAATGA+AGG | + | chr5.2:77356666-77356685 | None:intergenic | 30.0% |
| !! | TATCGCTTTTAAAGAAGACT+TGG | - | chr5.2:77357162-77357181 | MS.gene030034:intron | 30.0% |
| !! | TATTTTAGATGCATCCTCAT+AGG | - | chr5.2:77354973-77354992 | MS.gene030034:CDS | 30.0% |
| AACATGGTTGCTATAGAGTT+TGG | - | chr5.2:77355149-77355168 | MS.gene030034:CDS | 35.0% | |
| AAGGCTTATTGTGAACTGTA+AGG | - | chr5.2:77356020-77356039 | MS.gene030034:intron | 35.0% | |
| AATATAAAAAAAGGGCAGCC+CGG | + | chr5.2:77355515-77355534 | None:intergenic | 35.0% | |
| AATTCTTCCTATTGTTGTGC+AGG | - | chr5.2:77356408-77356427 | MS.gene030034:intron | 35.0% | |
| AATTGATGCTATGATAGACG+AGG | - | chr5.2:77357006-77357025 | MS.gene030034:CDS | 35.0% | |
| ACATATGTTGAGGTAAAAGG+TGG | - | chr5.2:77355949-77355968 | MS.gene030034:intron | 35.0% | |
| ACCATACATATCGACCATAT+CGG | - | chr5.2:77355219-77355238 | MS.gene030034:CDS | 35.0% | |
| ACCGAAGATTCCATTAGAAA+AGG | + | chr5.2:77356359-77356378 | None:intergenic | 35.0% | |
| AGCAACTTCTTATGGAATTG+AGG | - | chr5.2:77357137-77357156 | MS.gene030034:intron | 35.0% | |
| ATATGGTTTCTGAACATGCA+AGG | + | chr5.2:77356194-77356213 | None:intergenic | 35.0% | |
| ATCCTGAAAAGAAGAAGCTA+AGG | - | chr5.2:77355899-77355918 | MS.gene030034:intron | 35.0% | |
| ATTCCATAAGAAGTTGCTCT+TGG | + | chr5.2:77357135-77357154 | None:intergenic | 35.0% | |
| CATACGTCAAATGAATCTTG+TGG | - | chr5.2:77355062-77355081 | MS.gene030034:CDS | 35.0% | |
| CATTACCCTCATTATTTGGT+AGG | + | chr5.2:77357698-77357717 | None:intergenic | 35.0% | |
| CTCTTATTGAATGGCGTAAT+GGG | + | chr5.2:77355844-77355863 | None:intergenic | 35.0% | |
| GAAGATCTTGCAGAACAAAT+TGG | - | chr5.2:77354630-77354649 | MS.gene030034:CDS | 35.0% | |
| GCAACTTCTTATGGAATTGA+GGG | - | chr5.2:77357138-77357157 | MS.gene030034:intron | 35.0% | |
| GCAAGGTTAAATAAATTGGC+TGG | - | chr5.2:77356063-77356082 | MS.gene030034:intron | 35.0% | |
| TAGTAGACTTTGACAAAGTG+AGG | - | chr5.2:77354673-77354692 | MS.gene030034:CDS | 35.0% | |
| TCATATGTATTTCCCTTTGG+TGG | - | chr5.2:77355985-77356004 | MS.gene030034:intron | 35.0% | |
| TGAATTGGAAAGTCATGAGA+AGG | - | chr5.2:77357672-77357691 | MS.gene030034:intron | 35.0% | |
| TGTTGAAGATAAAATCCTGG+AGG | - | chr5.2:77357642-77357661 | MS.gene030034:intron | 35.0% | |
| TTAGTAGTTACATACCCAGT+TGG | - | chr5.2:77356503-77356522 | MS.gene030034:CDS | 35.0% | |
| TTTCTTGCAACGGAATTCAA+TGG | - | chr5.2:77354898-77354917 | MS.gene030034:CDS | 35.0% | |
| ! | AATGAAAGCTATTGATTGCC+AGG | - | chr5.2:77356677-77356696 | MS.gene030034:intron | 35.0% |
| ! | ACAAAAAGGGCCTTTTCTAA+TGG | - | chr5.2:77356346-77356365 | MS.gene030034:CDS | 35.0% |
| ! | AGAATGAAGGCACATCAAAA+AGG | + | chr5.2:77356653-77356672 | None:intergenic | 35.0% |
| ! | AGTTAGTTTCAACACAGTCA+TGG | - | chr5.2:77357216-77357235 | MS.gene030034:intron | 35.0% |
| ! | ATCGACAAAGTGTTATCAGA+AGG | - | chr5.2:77357043-77357062 | MS.gene030034:intron | 35.0% |
| ! | GACAGAATGCTGAGATTTTA+AGG | + | chr5.2:77357080-77357099 | None:intergenic | 35.0% |
| ! | GACATCCTTTAACGTTTTCA+AGG | - | chr5.2:77354716-77354735 | MS.gene030034:CDS | 35.0% |
| ! | GCCTTTTCTAATGGAATCTT+CGG | - | chr5.2:77356355-77356374 | MS.gene030034:intron | 35.0% |
| ! | TACCTTAGCTTCTTCTTTTC+AGG | + | chr5.2:77355904-77355923 | None:intergenic | 35.0% |
| ! | TCAAGCTGTTACTTAATTGC+GGG | - | chr5.2:77355449-77355468 | MS.gene030034:intron | 35.0% |
| ! | TCGACAAAGTGTTATCAGAA+GGG | - | chr5.2:77357044-77357063 | MS.gene030034:intron | 35.0% |
| ! | TGCCAGGTATTTTCTTTTTG+AGG | - | chr5.2:77356693-77356712 | MS.gene030034:intron | 35.0% |
| ! | TTTTCCCTTAATGCTTGTGA+GGG | - | chr5.2:77355560-77355579 | MS.gene030034:CDS | 35.0% |
| ! | TTTTTCCCTTAATGCTTGTG+AGG | - | chr5.2:77355559-77355578 | MS.gene030034:CDS | 35.0% |
| !!! | GAGATTGAACTTTTTGAGGT+TGG | - | chr5.2:77356102-77356121 | MS.gene030034:CDS | 35.0% |
| !!! | GCCGACAAATTTTAAAGTGT+TGG | + | chr5.2:77356972-77356991 | None:intergenic | 35.0% |
| !!! | TTTTAAAGTGTTGGCTTTGC+TGG | + | chr5.2:77356963-77356982 | None:intergenic | 35.0% |
| AACCTTGCCAAGATTTCTGA+TGG | + | chr5.2:77356051-77356070 | None:intergenic | 40.0% | |
| AAGAAGTTGCTCTTGGAAGT+TGG | + | chr5.2:77357128-77357147 | None:intergenic | 40.0% | |
| AAGATTGGGTCAAGCAATCA+TGG | - | chr5.2:77356225-77356244 | MS.gene030034:intron | 40.0% | |
| ACGCCAAGTTACTGTTTCAT+TGG | - | chr5.2:77356529-77356548 | MS.gene030034:intron | 40.0% | |
| AGAAGGCCTACCAAATAATG+AGG | - | chr5.2:77357689-77357708 | MS.gene030034:intron | 40.0% | |
| AGAAGTTGCTCTTGGAAGTT+GGG | + | chr5.2:77357127-77357146 | None:intergenic | 40.0% | |
| ATAAAGGTCCTGCATATGCA+GGG | + | chr5.2:77355488-77355507 | None:intergenic | 40.0% | |
| ATAGAGACCACTCATGCTAA+AGG | - | chr5.2:77356935-77356954 | MS.gene030034:CDS | 40.0% | |
| ATGATAGACGAGGATGTCAT+TGG | - | chr5.2:77357016-77357035 | MS.gene030034:CDS | 40.0% | |
| ATGCAGGACCTTTATGAAAC+CGG | - | chr5.2:77355493-77355512 | MS.gene030034:intron | 40.0% | |
| CCAAAAACAAGTCTTGAAGC+TGG | - | chr5.2:77357099-77357118 | MS.gene030034:intron | 40.0% | |
| CCAATTGAAAGAGCTTTACG+AGG | - | chr5.2:77355679-77355698 | MS.gene030034:intron | 40.0% | |
| CCACGAATGCAGTTAGAAAA+TGG | - | chr5.2:77356573-77356592 | MS.gene030034:intron | 40.0% | |
| CCTCGTAAAGCTCTTTCAAT+TGG | + | chr5.2:77355682-77355701 | None:intergenic | 40.0% | |
| CTCATTCTGATTCCAATTGC+AGG | - | chr5.2:77355652-77355671 | MS.gene030034:intron | 40.0% | |
| CTCTGGTTGTTGACAAATGT+TGG | - | chr5.2:77355357-77355376 | MS.gene030034:CDS | 40.0% | |
| CTTCCAAGAGCAACTTCTTA+TGG | - | chr5.2:77357129-77357148 | MS.gene030034:intron | 40.0% | |
| GAAGGCCTACCAAATAATGA+GGG | - | chr5.2:77357690-77357709 | MS.gene030034:intron | 40.0% | |
| GCCAAGCTTGAAAAACTACA+AGG | - | chr5.2:77357502-77357521 | MS.gene030034:CDS | 40.0% | |
| GCTCTTATTGAATGGCGTAA+TGG | + | chr5.2:77355845-77355864 | None:intergenic | 40.0% | |
| GGATAAGCCATCAGAAATCT+TGG | - | chr5.2:77356041-77356060 | MS.gene030034:intron | 40.0% | |
| TGAAGCTCATCAGTCAAAAG+TGG | - | chr5.2:77356910-77356929 | MS.gene030034:intron | 40.0% | |
| TTCTGATTCCAATTGCAGGT+AGG | - | chr5.2:77355656-77355675 | MS.gene030034:intron | 40.0% | |
| TTGAAAAACTACAAGGCGAC+CGG | - | chr5.2:77357509-77357528 | MS.gene030034:CDS | 40.0% | |
| ! | AAGGCCCTTTTTGTTCTTGT+TGG | + | chr5.2:77356340-77356359 | None:intergenic | 40.0% |
| ! | AATTCCAGCGCTTTTGGATA+TGG | - | chr5.2:77355183-77355202 | MS.gene030034:CDS | 40.0% |
| ! | ACTTGATTTGATCATCAGCG+TGG | + | chr5.2:77357615-77357634 | None:intergenic | 40.0% |
| ! | ATATGCTTGCTGGTGATGAA+TGG | - | chr5.2:77356265-77356284 | MS.gene030034:intron | 40.0% |
| ! | ATGAAGGCACATCAAAAAGG+TGG | + | chr5.2:77356650-77356669 | None:intergenic | 40.0% |
| ! | CCATTTTCTAACTGCATTCG+TGG | + | chr5.2:77356576-77356595 | None:intergenic | 40.0% |
| ! | GAGGCATTACCCTCATTATT+TGG | + | chr5.2:77357702-77357721 | None:intergenic | 40.0% |
| !! | CAACACTGACTTGTTCTAGT+TGG | + | chr5.2:77357279-77357298 | None:intergenic | 40.0% |
| !! | CCAGCTTCAAGACTTGTTTT+TGG | + | chr5.2:77357102-77357121 | None:intergenic | 40.0% |
| !! | CGAATGTTGTTTCCTTGTTC+AGG | - | chr5.2:77356784-77356803 | MS.gene030034:intron | 40.0% |
| !! | TTGTTCAGGTTCCTCCTTTT+CGG | - | chr5.2:77356798-77356817 | MS.gene030034:intron | 40.0% |
| !! | TTTTCCATATCCAAAAGCGC+TGG | + | chr5.2:77355190-77355209 | None:intergenic | 40.0% |
| !!! | GCCTTGTAGTTTTTCAAGCT+TGG | + | chr5.2:77357506-77357525 | None:intergenic | 40.0% |
| AAGCACCCTCACAAGCATTA+AGG | + | chr5.2:77355568-77355587 | None:intergenic | 45.0% | |
| ACCTTGTCAACAACATTGCG+AGG | - | chr5.2:77357305-77357324 | MS.gene030034:intron | 45.0% | |
| ACTGGCAAACGCATGACATT+TGG | + | chr5.2:77356448-77356467 | None:intergenic | 45.0% | |
| AGCACCCTCACAAGCATTAA+GGG | + | chr5.2:77355567-77355586 | None:intergenic | 45.0% | |
| AGCCATCAGAAATCTTGGCA+AGG | - | chr5.2:77356046-77356065 | MS.gene030034:intron | 45.0% | |
| ATGTGTGTCAAAGGCCGATA+TGG | + | chr5.2:77355236-77355255 | None:intergenic | 45.0% | |
| CAAGAGAGTTGCGTTGTGTT+TGG | + | chr5.2:77357459-77357478 | None:intergenic | 45.0% | |
| CATAAAGGTCCTGCATATGC+AGG | + | chr5.2:77355489-77355508 | None:intergenic | 45.0% | |
| CATGCGTTTGCCAGTTAAGA+AGG | - | chr5.2:77356453-77356472 | MS.gene030034:intron | 45.0% | |
| CCAACATAACTGCCACCAAA+GGG | + | chr5.2:77356000-77356019 | None:intergenic | 45.0% | |
| GAAAAGGAGGAACCTGAACA+AGG | + | chr5.2:77356799-77356818 | None:intergenic | 45.0% | |
| GCCGATATGGTCGATATGTA+TGG | + | chr5.2:77355223-77355242 | None:intergenic | 45.0% | |
| TCCAACATAACTGCCACCAA+AGG | + | chr5.2:77356001-77356020 | None:intergenic | 45.0% | |
| TCCTCGCAATGTTGTTGACA+AGG | + | chr5.2:77357309-77357328 | None:intergenic | 45.0% | |
| TCTATATCTGAGGGCCGAAA+AGG | + | chr5.2:77356815-77356834 | None:intergenic | 45.0% | |
| TGAAAAACTACAAGGCGACC+GGG | - | chr5.2:77357510-77357529 | MS.gene030034:CDS | 45.0% | |
| TGCAGGACCTTTATGAAACC+GGG | - | chr5.2:77355494-77355513 | MS.gene030034:intron | 45.0% | |
| ! | TAGCTCAATTCCAGCGCTTT+TGG | - | chr5.2:77355177-77355196 | MS.gene030034:CDS | 45.0% |
| ! | TCAATTGGCCTACCTGCAAT+TGG | + | chr5.2:77355667-77355686 | None:intergenic | 45.0% |
| ! | TTGGTGGCAGTTATGTTGGA+AGG | - | chr5.2:77356001-77356020 | MS.gene030034:intron | 45.0% |
| !! | CAATGGCCTTTAAGACATGC+TGG | - | chr5.2:77354915-77354934 | MS.gene030034:CDS | 45.0% |
| !! | GAATCTCAGCCATTTTAGCC+CGG | + | chr5.2:77357531-77357550 | None:intergenic | 45.0% |
| ATATCTGAGGGCCGAAAAGG+AGG | + | chr5.2:77356812-77356831 | None:intergenic | 50.0% | |
| CCAATTCAGTTTGTGCCTCC+AGG | + | chr5.2:77357660-77357679 | None:intergenic | 50.0% | |
| GAGAGTTGCGTTGTGTTTGG+TGG | + | chr5.2:77357456-77357475 | None:intergenic | 50.0% | |
| GCTGGTACCTTTAGCATGAG+TGG | + | chr5.2:77356945-77356964 | None:intergenic | 50.0% | |
| GCTTCCTCGATGTGTGTCAA+AGG | + | chr5.2:77355245-77355264 | None:intergenic | 50.0% | |
| TAACTTGGCGTGCACCAACT+GGG | + | chr5.2:77356520-77356539 | None:intergenic | 50.0% | |
| TCTGGAAGTGGAGCATGAAC+TGG | - | chr5.2:77355721-77355740 | MS.gene030034:CDS | 50.0% | |
| TTTGATCATCAGCGTGGCGA+TGG | + | chr5.2:77357609-77357628 | None:intergenic | 50.0% | |
| ! | CCCTTTGGTGGCAGTTATGT+TGG | - | chr5.2:77355997-77356016 | MS.gene030034:intron | 50.0% |
| ! | CCTGGAGGCACAAACTGAAT+TGG | - | chr5.2:77357657-77357676 | MS.gene030034:intron | 50.0% |
| ! | GTTGTGTTTGGTGGTCTGTG+AGG | + | chr5.2:77357447-77357466 | None:intergenic | 50.0% |
| ACAAGGCGACCGGGCTAAAA+TGG | - | chr5.2:77357519-77357538 | MS.gene030034:CDS | 55.0% | |
| AGGGCAGCCCGGTTTCATAA+AGG | + | chr5.2:77355504-77355523 | None:intergenic | 55.0% | |
| GTAACTTGGCGTGCACCAAC+TGG | + | chr5.2:77356521-77356540 | None:intergenic | 55.0% | |
| TCGGCCTTTGACACACATCG+AGG | - | chr5.2:77355238-77355257 | MS.gene030034:CDS | 55.0% | |
| TGCATATGCAGGGTCCGAGA+GGG | + | chr5.2:77355478-77355497 | None:intergenic | 55.0% | |
| TTAATTGCGGGACCCCCTCT+CGG | - | chr5.2:77355461-77355480 | MS.gene030034:intron | 55.0% | |
| CATATGCAGGGTCCGAGAGG+GGG | + | chr5.2:77355476-77355495 | None:intergenic | 60.0% | |
| CTCTCGGACCCTGCATATGC+AGG | - | chr5.2:77355477-77355496 | MS.gene030034:intron | 60.0% | |
| CTGCATATGCAGGGTCCGAG+AGG | + | chr5.2:77355479-77355498 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGAGAG+GGG | + | chr5.2:77355477-77355496 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 77354469 | 77357729 | 77354469 | ID=MS.gene030034 |
| chr5.2 | mRNA | 77354469 | 77357729 | 77354469 | ID=MS.gene030034.t1;Parent=MS.gene030034 |
| chr5.2 | exon | 77357697 | 77357729 | 77357697 | ID=MS.gene030034.t1.exon1;Parent=MS.gene030034.t1 |
| chr5.2 | CDS | 77357697 | 77357729 | 77357697 | ID=cds.MS.gene030034.t1;Parent=MS.gene030034.t1 |
| chr5.2 | exon | 77357461 | 77357580 | 77357461 | ID=MS.gene030034.t1.exon2;Parent=MS.gene030034.t1 |
| chr5.2 | CDS | 77357461 | 77357580 | 77357461 | ID=cds.MS.gene030034.t1;Parent=MS.gene030034.t1 |
| chr5.2 | exon | 77356927 | 77357049 | 77356927 | ID=MS.gene030034.t1.exon3;Parent=MS.gene030034.t1 |
| chr5.2 | CDS | 77356927 | 77357049 | 77356927 | ID=cds.MS.gene030034.t1;Parent=MS.gene030034.t1 |
| chr5.2 | exon | 77356456 | 77356524 | 77356456 | ID=MS.gene030034.t1.exon4;Parent=MS.gene030034.t1 |
| chr5.2 | CDS | 77356456 | 77356524 | 77356456 | ID=cds.MS.gene030034.t1;Parent=MS.gene030034.t1 |
| chr5.2 | exon | 77356278 | 77356366 | 77356278 | ID=MS.gene030034.t1.exon5;Parent=MS.gene030034.t1 |
| chr5.2 | CDS | 77356278 | 77356366 | 77356278 | ID=cds.MS.gene030034.t1;Parent=MS.gene030034.t1 |
| chr5.2 | exon | 77356079 | 77356187 | 77356079 | ID=MS.gene030034.t1.exon6;Parent=MS.gene030034.t1 |
| chr5.2 | CDS | 77356079 | 77356187 | 77356079 | ID=cds.MS.gene030034.t1;Parent=MS.gene030034.t1 |
| chr5.2 | exon | 77355700 | 77355768 | 77355700 | ID=MS.gene030034.t1.exon7;Parent=MS.gene030034.t1 |
| chr5.2 | CDS | 77355700 | 77355768 | 77355700 | ID=cds.MS.gene030034.t1;Parent=MS.gene030034.t1 |
| chr5.2 | exon | 77355500 | 77355613 | 77355500 | ID=MS.gene030034.t1.exon8;Parent=MS.gene030034.t1 |
| chr5.2 | CDS | 77355500 | 77355613 | 77355500 | ID=cds.MS.gene030034.t1;Parent=MS.gene030034.t1 |
| chr5.2 | exon | 77354469 | 77355392 | 77354469 | ID=MS.gene030034.t1.exon9;Parent=MS.gene030034.t1 |
| chr5.2 | CDS | 77354469 | 77355392 | 77354469 | ID=cds.MS.gene030034.t1;Parent=MS.gene030034.t1 |
| Gene Sequence |
| Protein sequence |
