Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030045.t1 | XP_024640076.1 | 74.5 | 736 | 128 | 5 | 1 | 677 | 1 | 735 | 1.40E-291 | 1011.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030045.t1 | Q9FPT1 | 30.7 | 772 | 161 | 8 | 15 | 433 | 52 | 802 | 6.4e-80 | 300.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030045.t1 | A0A072UH26 | 87.8 | 483 | 50 | 1 | 1 | 474 | 1 | 483 | 2.2e-238 | 834.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030045.t1 | MTR_5g091550 | 87.992 | 483 | 49 | 1 | 1 | 474 | 1 | 483 | 0.0 | 868 |
MS.gene030045.t1 | MTR_5g091550 | 86.957 | 483 | 49 | 2 | 1 | 474 | 1 | 478 | 0.0 | 851 |
MS.gene030045.t1 | MTR_5g091450 | 57.467 | 750 | 239 | 10 | 2 | 677 | 3 | 746 | 0.0 | 762 |
MS.gene030045.t1 | MTR_5g091180 | 60.299 | 670 | 231 | 9 | 15 | 677 | 42 | 683 | 0.0 | 723 |
MS.gene030045.t1 | MTR_5g091430 | 62.227 | 503 | 182 | 4 | 180 | 676 | 3 | 503 | 0.0 | 583 |
MS.gene030045.t1 | MTR_5g091530 | 61.520 | 408 | 128 | 5 | 59 | 462 | 2 | 384 | 4.20e-157 | 458 |
MS.gene030045.t1 | MTR_5g091410 | 52.437 | 513 | 207 | 8 | 171 | 677 | 23 | 504 | 5.71e-149 | 444 |
MS.gene030045.t1 | MTR_5g086700 | 66.788 | 274 | 84 | 3 | 147 | 418 | 539 | 807 | 2.16e-104 | 343 |
MS.gene030045.t1 | MTR_5g086700 | 57.031 | 128 | 55 | 0 | 15 | 142 | 57 | 184 | 7.63e-42 | 164 |
MS.gene030045.t1 | MTR_5g086700 | 66.788 | 274 | 84 | 3 | 147 | 418 | 539 | 807 | 2.73e-104 | 343 |
MS.gene030045.t1 | MTR_5g086700 | 57.031 | 128 | 55 | 0 | 15 | 142 | 57 | 184 | 8.11e-42 | 164 |
MS.gene030045.t1 | MTR_3g079840 | 65.328 | 274 | 88 | 3 | 147 | 418 | 534 | 802 | 6.47e-103 | 339 |
MS.gene030045.t1 | MTR_3g079840 | 53.906 | 128 | 59 | 0 | 15 | 142 | 52 | 179 | 4.00e-40 | 159 |
MS.gene030045.t1 | MTR_3g079840 | 65.328 | 274 | 88 | 3 | 147 | 418 | 535 | 803 | 6.63e-103 | 339 |
MS.gene030045.t1 | MTR_3g079840 | 53.906 | 128 | 59 | 0 | 15 | 142 | 53 | 180 | 3.86e-40 | 159 |
MS.gene030045.t1 | MTR_1g041240 | 57.455 | 275 | 109 | 4 | 147 | 418 | 534 | 803 | 2.37e-84 | 288 |
MS.gene030045.t1 | MTR_1g041240 | 47.857 | 140 | 71 | 2 | 15 | 154 | 53 | 190 | 6.44e-36 | 145 |
MS.gene030045.t1 | MTR_1g041240 | 57.455 | 275 | 109 | 4 | 147 | 418 | 536 | 805 | 2.42e-84 | 288 |
MS.gene030045.t1 | MTR_1g041240 | 47.857 | 140 | 71 | 2 | 15 | 154 | 55 | 192 | 6.39e-36 | 145 |
MS.gene030045.t1 | MTR_1g041240 | 57.455 | 275 | 109 | 4 | 147 | 418 | 535 | 804 | 2.47e-84 | 288 |
MS.gene030045.t1 | MTR_1g041240 | 47.857 | 140 | 71 | 2 | 15 | 154 | 54 | 191 | 6.38e-36 | 145 |
MS.gene030045.t1 | MTR_1g042160 | 29.018 | 224 | 148 | 5 | 17 | 233 | 11 | 230 | 1.08e-23 | 102 |
MS.gene030045.t1 | MTR_7g107160 | 33.813 | 139 | 80 | 3 | 17 | 144 | 128 | 265 | 1.99e-20 | 95.1 |
MS.gene030045.t1 | MTR_1g073790 | 36.296 | 135 | 76 | 5 | 20 | 150 | 63 | 191 | 6.93e-18 | 89.0 |
MS.gene030045.t1 | MTR_7g107200 | 34.884 | 129 | 81 | 2 | 17 | 142 | 11 | 139 | 7.68e-18 | 86.3 |
MS.gene030045.t1 | MTR_1g073800 | 35.556 | 135 | 79 | 5 | 20 | 150 | 50 | 180 | 7.94e-18 | 87.0 |
MS.gene030045.t1 | MTR_8g006190 | 38.938 | 113 | 62 | 2 | 37 | 142 | 10 | 122 | 8.79e-18 | 87.0 |
MS.gene030045.t1 | MTR_1g044450 | 36.296 | 135 | 76 | 5 | 20 | 150 | 66 | 194 | 1.10e-17 | 88.2 |
MS.gene030045.t1 | MTR_3g106700 | 34.307 | 137 | 79 | 2 | 17 | 142 | 404 | 540 | 2.41e-17 | 87.4 |
MS.gene030045.t1 | MTR_3g106700 | 28.767 | 146 | 91 | 4 | 2 | 138 | 50 | 191 | 1.60e-12 | 71.6 |
MS.gene030045.t1 | MTR_4g123750 | 36.184 | 152 | 87 | 5 | 37 | 179 | 40 | 190 | 2.47e-16 | 80.9 |
MS.gene030045.t1 | MTR_5g091460 | 71.429 | 42 | 12 | 0 | 180 | 221 | 3 | 44 | 8.64e-13 | 63.9 |
MS.gene030045.t1 | MTR_8g006190 | 38.000 | 100 | 55 | 2 | 50 | 142 | 15 | 114 | 1.10e-12 | 70.9 |
MS.gene030045.t1 | MTR_8g011730 | 27.692 | 130 | 89 | 3 | 17 | 142 | 12 | 140 | 3.52e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030045.t1 | AT5G06600 | 57.439 | 289 | 100 | 7 | 147 | 433 | 535 | 802 | 1.25e-84 | 287 |
MS.gene030045.t1 | AT5G06600 | 54.264 | 129 | 59 | 0 | 15 | 143 | 52 | 180 | 5.59e-39 | 155 |
MS.gene030045.t1 | AT5G06600 | 57.439 | 289 | 100 | 7 | 147 | 433 | 534 | 801 | 6.92e-84 | 286 |
MS.gene030045.t1 | AT5G06600 | 54.264 | 129 | 59 | 0 | 15 | 143 | 51 | 179 | 5.94e-39 | 155 |
MS.gene030045.t1 | AT5G06600 | 57.439 | 289 | 100 | 7 | 147 | 433 | 535 | 802 | 7.57e-84 | 286 |
MS.gene030045.t1 | AT5G06600 | 54.264 | 129 | 59 | 0 | 15 | 143 | 52 | 180 | 5.89e-39 | 155 |
MS.gene030045.t1 | AT3G11910 | 57.299 | 274 | 109 | 4 | 147 | 418 | 533 | 800 | 6.00e-83 | 284 |
MS.gene030045.t1 | AT3G11910 | 50.388 | 129 | 64 | 0 | 15 | 143 | 51 | 179 | 1.35e-37 | 151 |
MS.gene030045.t1 | AT3G11910 | 57.299 | 274 | 109 | 4 | 147 | 418 | 533 | 800 | 6.00e-83 | 284 |
MS.gene030045.t1 | AT3G11910 | 50.388 | 129 | 64 | 0 | 15 | 143 | 51 | 179 | 1.35e-37 | 151 |
MS.gene030045.t1 | AT3G11910 | 57.299 | 274 | 109 | 4 | 147 | 418 | 532 | 799 | 6.63e-83 | 284 |
MS.gene030045.t1 | AT3G11910 | 50.388 | 129 | 64 | 0 | 15 | 143 | 50 | 178 | 1.42e-37 | 150 |
MS.gene030045.t1 | AT3G11910 | 57.299 | 274 | 109 | 4 | 147 | 418 | 532 | 799 | 6.63e-83 | 284 |
MS.gene030045.t1 | AT3G11910 | 50.388 | 129 | 64 | 0 | 15 | 143 | 50 | 178 | 1.42e-37 | 150 |
MS.gene030045.t1 | AT3G58250 | 41.085 | 129 | 72 | 2 | 18 | 142 | 9 | 137 | 8.91e-24 | 103 |
MS.gene030045.t1 | AT3G58210 | 40.310 | 129 | 75 | 1 | 20 | 146 | 9 | 137 | 6.21e-22 | 97.8 |
MS.gene030045.t1 | AT3G58270 | 37.795 | 127 | 79 | 0 | 20 | 146 | 9 | 135 | 1.11e-21 | 97.4 |
MS.gene030045.t1 | AT3G58270 | 37.795 | 127 | 79 | 0 | 20 | 146 | 9 | 135 | 1.11e-21 | 97.4 |
MS.gene030045.t1 | AT3G58270 | 37.795 | 127 | 79 | 0 | 20 | 146 | 9 | 135 | 1.11e-21 | 97.4 |
MS.gene030045.t1 | AT3G58350 | 37.692 | 130 | 76 | 3 | 21 | 145 | 10 | 139 | 1.49e-20 | 93.2 |
MS.gene030045.t1 | AT3G58350 | 37.692 | 130 | 76 | 3 | 21 | 145 | 10 | 139 | 1.49e-20 | 93.2 |
MS.gene030045.t1 | AT1G31390 | 38.793 | 116 | 68 | 1 | 21 | 133 | 10 | 125 | 1.03e-19 | 90.1 |
MS.gene030045.t1 | AT3G58410 | 35.200 | 125 | 78 | 1 | 18 | 142 | 7 | 128 | 1.26e-19 | 90.9 |
MS.gene030045.t1 | AT3G58370 | 35.433 | 127 | 79 | 2 | 20 | 143 | 10 | 136 | 6.25e-19 | 88.6 |
MS.gene030045.t1 | AT3G58360 | 38.710 | 124 | 74 | 1 | 21 | 142 | 10 | 133 | 1.32e-18 | 87.4 |
MS.gene030045.t1 | AT3G58410 | 34.586 | 133 | 70 | 1 | 10 | 142 | 20 | 135 | 2.66e-18 | 87.0 |
MS.gene030045.t1 | AT3G58340 | 33.071 | 127 | 85 | 0 | 20 | 146 | 9 | 135 | 1.48e-17 | 84.7 |
MS.gene030045.t1 | AT3G58340 | 33.071 | 127 | 85 | 0 | 20 | 146 | 9 | 135 | 1.63e-17 | 84.7 |
MS.gene030045.t1 | AT2G25320 | 36.567 | 134 | 73 | 3 | 20 | 142 | 406 | 538 | 2.09e-17 | 87.4 |
MS.gene030045.t1 | AT2G25320 | 26.712 | 146 | 95 | 3 | 22 | 155 | 76 | 221 | 1.24e-12 | 72.0 |
MS.gene030045.t1 | AT2G25320 | 36.567 | 134 | 73 | 3 | 20 | 142 | 405 | 537 | 2.13e-17 | 87.4 |
MS.gene030045.t1 | AT2G25320 | 26.712 | 146 | 95 | 3 | 22 | 155 | 75 | 220 | 1.26e-12 | 72.0 |
MS.gene030045.t1 | AT5G52330 | 33.103 | 145 | 89 | 4 | 21 | 162 | 22 | 161 | 3.60e-17 | 84.7 |
MS.gene030045.t1 | AT5G52330 | 33.103 | 145 | 89 | 4 | 21 | 162 | 22 | 161 | 3.60e-17 | 84.7 |
MS.gene030045.t1 | AT5G52330 | 33.103 | 145 | 89 | 4 | 21 | 162 | 22 | 161 | 3.60e-17 | 84.7 |
MS.gene030045.t1 | AT2G25320 | 36.567 | 134 | 73 | 3 | 20 | 142 | 406 | 538 | 4.19e-17 | 86.7 |
MS.gene030045.t1 | AT2G25320 | 26.712 | 146 | 95 | 3 | 22 | 155 | 76 | 221 | 1.49e-12 | 72.0 |
MS.gene030045.t1 | AT2G05410 | 35.938 | 128 | 77 | 3 | 19 | 142 | 8 | 134 | 4.41e-17 | 83.2 |
MS.gene030045.t1 | AT1G04300 | 41.284 | 109 | 58 | 3 | 20 | 125 | 70 | 175 | 1.54e-16 | 84.7 |
MS.gene030045.t1 | AT3G17380 | 32.432 | 148 | 95 | 2 | 37 | 179 | 42 | 189 | 4.20e-16 | 80.1 |
MS.gene030045.t1 | AT3G17380 | 30.952 | 126 | 83 | 2 | 20 | 142 | 176 | 300 | 7.54e-12 | 67.4 |
MS.gene030045.t1 | AT5G43560 | 42.308 | 104 | 58 | 2 | 21 | 123 | 72 | 174 | 4.80e-16 | 82.8 |
MS.gene030045.t1 | AT5G43560 | 42.308 | 104 | 58 | 2 | 21 | 123 | 72 | 174 | 4.80e-16 | 82.8 |
MS.gene030045.t1 | AT3G58260 | 31.818 | 132 | 86 | 2 | 19 | 146 | 8 | 139 | 1.15e-15 | 79.0 |
MS.gene030045.t1 | AT3G58290 | 34.028 | 144 | 83 | 3 | 10 | 142 | 2 | 144 | 1.53e-15 | 78.2 |
MS.gene030045.t1 | AT2G05420 | 34.074 | 135 | 78 | 3 | 18 | 142 | 8 | 141 | 1.67e-15 | 78.2 |
MS.gene030045.t1 | AT3G44790 | 34.615 | 130 | 78 | 3 | 16 | 142 | 2 | 127 | 3.97e-15 | 77.4 |
MS.gene030045.t1 | AT3G27040 | 30.000 | 130 | 90 | 1 | 18 | 146 | 8 | 137 | 4.27e-15 | 76.6 |
MS.gene030045.t1 | AT1G04300 | 39.316 | 117 | 57 | 4 | 20 | 125 | 70 | 183 | 5.92e-15 | 79.3 |
MS.gene030045.t1 | AT2G01790 | 31.250 | 128 | 85 | 1 | 22 | 146 | 11 | 138 | 1.97e-14 | 74.7 |
MS.gene030045.t1 | AT2G42460 | 33.846 | 130 | 82 | 3 | 18 | 146 | 8 | 134 | 2.00e-14 | 75.1 |
MS.gene030045.t1 | AT1G31400 | 31.783 | 129 | 82 | 2 | 21 | 146 | 10 | 135 | 3.13e-14 | 73.9 |
MS.gene030045.t1 | AT3G44800 | 32.576 | 132 | 88 | 1 | 16 | 146 | 2 | 133 | 4.69e-14 | 74.7 |
MS.gene030045.t1 | AT3G58220 | 36.641 | 131 | 78 | 4 | 16 | 142 | 9 | 138 | 5.49e-14 | 73.9 |
MS.gene030045.t1 | AT3G58220 | 36.641 | 131 | 78 | 4 | 16 | 142 | 9 | 138 | 6.27e-14 | 74.3 |
MS.gene030045.t1 | AT3G58220 | 36.641 | 131 | 78 | 4 | 16 | 142 | 9 | 138 | 6.35e-14 | 72.8 |
MS.gene030045.t1 | AT3G58220 | 36.641 | 131 | 78 | 4 | 16 | 142 | 9 | 138 | 6.40e-14 | 75.1 |
MS.gene030045.t1 | AT3G58220 | 36.641 | 131 | 78 | 4 | 16 | 142 | 9 | 138 | 7.51e-14 | 73.9 |
MS.gene030045.t1 | AT1G04300 | 43.478 | 92 | 46 | 3 | 37 | 125 | 68 | 156 | 2.89e-13 | 73.9 |
MS.gene030045.t1 | AT2G25330 | 37.313 | 134 | 73 | 3 | 20 | 142 | 360 | 493 | 5.13e-13 | 72.8 |
MS.gene030045.t1 | AT2G25330 | 29.457 | 129 | 80 | 4 | 22 | 142 | 50 | 175 | 5.41e-12 | 69.7 |
MS.gene030045.t1 | AT5G26320 | 31.667 | 120 | 75 | 2 | 31 | 143 | 75 | 194 | 7.08e-13 | 70.9 |
MS.gene030045.t1 | AT5G26260 | 33.333 | 111 | 69 | 2 | 37 | 142 | 82 | 192 | 3.80e-12 | 68.9 |
MS.gene030045.t1 | AT3G58200 | 28.319 | 113 | 80 | 1 | 20 | 131 | 9 | 121 | 1.11e-11 | 67.0 |
MS.gene030045.t1 | AT2G42480 | 28.800 | 125 | 82 | 4 | 20 | 140 | 8 | 129 | 2.07e-11 | 66.6 |
MS.gene030045.t1 | AT5G26280 | 34.234 | 111 | 68 | 2 | 37 | 142 | 81 | 191 | 3.04e-11 | 65.9 |
MS.gene030045.t1 | AT5G26280 | 34.234 | 111 | 68 | 2 | 37 | 142 | 100 | 210 | 3.24e-11 | 66.2 |
MS.gene030045.t1 | AT2G04170 | 32.374 | 139 | 75 | 5 | 22 | 142 | 2 | 139 | 3.33e-11 | 65.5 |
MS.gene030045.t1 | AT2G04170 | 32.374 | 139 | 75 | 5 | 22 | 142 | 2 | 139 | 3.33e-11 | 65.5 |
MS.gene030045.t1 | AT2G04170 | 32.374 | 139 | 75 | 5 | 22 | 142 | 124 | 261 | 5.07e-11 | 65.5 |
MS.gene030045.t1 | AT2G04170 | 35.577 | 104 | 60 | 3 | 37 | 134 | 151 | 253 | 5.23e-11 | 65.1 |
MS.gene030045.t1 | AT2G04170 | 32.374 | 139 | 75 | 5 | 22 | 142 | 84 | 221 | 7.20e-11 | 65.1 |
MS.gene030045.t1 | AT2G04170 | 32.374 | 139 | 75 | 5 | 22 | 142 | 124 | 261 | 8.63e-11 | 65.1 |
MS.gene030045.t1 | AT2G04170 | 32.374 | 139 | 75 | 5 | 22 | 142 | 124 | 261 | 8.63e-11 | 65.1 |
Find 119 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGACACTGCTGCGCATTTA+AGG | 0.166306 | 5.2:-77484848 | MS.gene030045:CDS |
CTTAACAAAGTTAAATAAAT+TGG | 0.179384 | 5.2:-77479467 | MS.gene030045:CDS |
TACCGTAGCTCCATTCTTTC+AGG | 0.187261 | 5.2:+77482816 | None:intergenic |
ATCTTGACGGGTGCTCTTCT+TGG | 0.239221 | 5.2:+77478081 | None:intergenic |
GTTTCGAGACTTCTTGTTCT+TGG | 0.253666 | 5.2:+77478356 | None:intergenic |
GAGAGTTGAGTTGGTTTAGA+TGG | 0.257143 | 5.2:+77477999 | None:intergenic |
CTGCTCGATTCCAGCGCTTT+TGG | 0.261128 | 5.2:-77483970 | MS.gene030045:CDS |
CCATGAATGCAGTTAGAAAA+TGG | 0.279567 | 5.2:-77479001 | MS.gene030045:intron |
GGGCAATTTAGAGACGTATT+TGG | 0.318377 | 5.2:-77483048 | MS.gene030045:CDS |
CACTAAACTAATAAGTGATT+GGG | 0.335351 | 5.2:-77484979 | MS.gene030045:CDS |
GAAGACCTTGCACAACAAAT+TGG | 0.338298 | 5.2:-77484501 | MS.gene030045:CDS |
GACTTGTTCTAGTTGGTTAG+AGG | 0.338734 | 5.2:+77478183 | None:intergenic |
GAAGTCGATGCTATGATAGA+TGG | 0.371729 | 5.2:-77478451 | MS.gene030045:CDS |
TCACTAAACTAATAAGTGAT+TGG | 0.378451 | 5.2:-77484980 | MS.gene030045:CDS |
ACAGGCAGACACTTGACATT+TGG | 0.392454 | 5.2:+77479123 | None:intergenic |
CTTTCAGAAAGATTCATCTA+TGG | 0.394672 | 5.2:-77478966 | MS.gene030045:CDS |
AGAACAAGAAGTCTCGAAAC+TGG | 0.400058 | 5.2:-77478353 | MS.gene030045:CDS |
AATGTTAATTTCATGTCAAC+AGG | 0.400953 | 5.2:+77479105 | None:intergenic |
GTCTTCTTGAGTAGTGGAAT+GGG | 0.401189 | 5.2:+77482876 | None:intergenic |
TCACCTCTACACTATTATAA+AGG | 0.406555 | 5.2:-77484653 | MS.gene030045:intron |
TATTCAGATGTATTTGAAGC+TGG | 0.406941 | 5.2:-77485480 | MS.gene030045:CDS |
GGTCCGTATTGTTCCCTCTT+GGG | 0.407234 | 5.2:+77485278 | None:intergenic |
TCAATGCTTTATTATCTTGA+CGG | 0.408066 | 5.2:+77478068 | None:intergenic |
CCTCCCCGAGAAACTTCTTC+AGG | 0.415804 | 5.2:-77478323 | MS.gene030045:CDS |
ATCTTGACCCTCAGTAACTT+TGG | 0.420067 | 5.2:+77477919 | None:intergenic |
ATGTATGTCAATGGCCGAAA+TGG | 0.426546 | 5.2:+77483914 | None:intergenic |
ACGATACATATCGTCCATTT+CGG | 0.428342 | 5.2:-77483928 | MS.gene030045:CDS |
CATGTATAAGATTGAATACC+TGG | 0.436208 | 5.2:+77485543 | None:intergenic |
AGCAGGTATGCCGAACGCTT+TGG | 0.436317 | 5.2:+77483988 | None:intergenic |
TTCACTAGATACCCTCTTGA+AGG | 0.442518 | 5.2:+77484918 | None:intergenic |
AGAAGTTTCTCGGGGAGGTT+GGG | 0.443223 | 5.2:+77478328 | None:intergenic |
GTTATATGATCCTGAAAGAA+TGG | 0.443959 | 5.2:-77482826 | MS.gene030045:CDS |
TCGTGATGTGTGTTCATACT+TGG | 0.445872 | 5.2:-77478921 | MS.gene030045:CDS |
AATTCCTGAAGAAGTTTCTC+GGG | 0.449190 | 5.2:+77478319 | None:intergenic |
CAATGCTTTATTATCTTGAC+GGG | 0.450921 | 5.2:+77478069 | None:intergenic |
TTGTGGGGTATTGTCTTTGA+AGG | 0.452531 | 5.2:-77478298 | MS.gene030045:CDS |
ATCTGCAGTACACAGATAGA+TGG | 0.453816 | 5.2:+77485249 | None:intergenic |
AGACACTGCTGCGCATTTAA+GGG | 0.455146 | 5.2:-77484847 | MS.gene030045:intron |
CAATTCCTGAAGAAGTTTCT+CGG | 0.455853 | 5.2:+77478318 | None:intergenic |
TGGTCCGTATTGTTCCCTCT+TGG | 0.459480 | 5.2:+77485277 | None:intergenic |
CAGCTAGTCTGCCCGATGGT+TGG | 0.460749 | 5.2:-77485225 | MS.gene030045:CDS |
AGGAGAGGTTGAAGAAAGAC+TGG | 0.461321 | 5.2:-77484714 | MS.gene030045:CDS |
ACAAAGTTAAATAAATTGGC+TGG | 0.463059 | 5.2:-77479463 | MS.gene030045:CDS |
AGCAGTGTCTTTCTCATCCT+CGG | 0.466577 | 5.2:+77484860 | None:intergenic |
AGACACTGACTTGTTCTAGT+TGG | 0.473955 | 5.2:+77478176 | None:intergenic |
GAAGAGGTTGCCAAAGCGTT+CGG | 0.476619 | 5.2:-77483998 | MS.gene030045:CDS |
GTTACAGATGGCAGTTATGT+TGG | 0.478233 | 5.2:-77479529 | MS.gene030045:intron |
AAGAAGTTTCTCGGGGAGGT+TGG | 0.478508 | 5.2:+77478327 | None:intergenic |
ATTCAGATGTATTTGAAGCT+GGG | 0.481685 | 5.2:-77485479 | MS.gene030045:CDS |
TGTCTTCTTGAGTAGTGGAA+TGG | 0.490972 | 5.2:+77482875 | None:intergenic |
CCTTTCCAATTTGTTGTGCA+AGG | 0.491291 | 5.2:+77484496 | None:intergenic |
AGAAACTTCTTCAGGAATTG+TGG | 0.491691 | 5.2:-77478315 | MS.gene030045:CDS |
GAAACTTCTTCAGGAATTGT+GGG | 0.494751 | 5.2:-77478314 | MS.gene030045:CDS |
AACTTTGTTAAGATTTGTGA+TGG | 0.495239 | 5.2:+77479478 | None:intergenic |
CAGGTATTCAATCTTATACA+TGG | 0.496385 | 5.2:-77485542 | MS.gene030045:CDS |
GATAAGTACTCTGTGACAAA+AGG | 0.496629 | 5.2:-77485157 | MS.gene030045:intron |
CACAAGAACGTCATACCTCT+TGG | 0.498075 | 5.2:-77484954 | MS.gene030045:CDS |
GAGCATCAAGAGAGTTGAGT+TGG | 0.500938 | 5.2:+77477990 | None:intergenic |
TACATATGTGCTCCAACCAT+CGG | 0.506808 | 5.2:+77485213 | None:intergenic |
AGAACTTCTCTTACAGCTCC+AGG | 0.507727 | 5.2:-77485561 | MS.gene030045:CDS |
AAGTCGATGCTATGATAGAT+GGG | 0.508375 | 5.2:-77478450 | MS.gene030045:CDS |
TATTGTCTTTGAAGGAGACT+TGG | 0.509642 | 5.2:-77478290 | MS.gene030045:CDS |
TTTGTAGAACGGAATTATGC+AGG | 0.511821 | 5.2:-77484734 | MS.gene030045:intron |
ACATATGTGCTCCAACCATC+GGG | 0.511979 | 5.2:+77485214 | None:intergenic |
TACACAGATAGATGGACAAA+TGG | 0.519840 | 5.2:+77485257 | None:intergenic |
TTTGGAAGTGGAGCGTGGGC+TGG | 0.524148 | 5.2:-77482998 | MS.gene030045:intron |
TATGAACACACATCACGAAA+GGG | 0.524828 | 5.2:+77478926 | None:intergenic |
GCACAAGCGTTATCCTTATG+TGG | 0.526993 | 5.2:-77478891 | MS.gene030045:CDS |
TCGATGGATGAAGCCACATA+AGG | 0.527157 | 5.2:+77478878 | None:intergenic |
GACTGTGTCTTCTTGAGTAG+TGG | 0.529529 | 5.2:+77482870 | None:intergenic |
GCTTATCAGTACAGTTTACA+AGG | 0.543104 | 5.2:+77479500 | None:intergenic |
TTGGTTGAAAACTTATCTGA+AGG | 0.551179 | 5.2:-77478271 | MS.gene030045:CDS |
TTGCCCATAGCCAAAAGCGC+TGG | 0.551602 | 5.2:+77483960 | None:intergenic |
ATAGAGACCTCTCGTGATGA+AGG | 0.553772 | 5.2:-77478520 | MS.gene030045:CDS |
CAAAAGCGCTGGAATCGAGC+AGG | 0.557203 | 5.2:+77483971 | None:intergenic |
TGAAGCTCAACAGTCAAAAG+TGG | 0.560417 | 5.2:-77478545 | MS.gene030045:CDS |
CGAATATGTGCACAATCCCC+AGG | 0.562771 | 5.2:-77478858 | MS.gene030045:intron |
CAGATGGCAGTTATGTTGGA+AGG | 0.568939 | 5.2:-77479525 | MS.gene030045:intron |
TGAAGAGATTGAACTATATG+AGG | 0.568948 | 5.2:-77479428 | MS.gene030045:intron |
TTCAGATGTATTTGAAGCTG+GGG | 0.572003 | 5.2:-77485478 | MS.gene030045:CDS |
TGGGAGGTAGCAAATATGAG+AGG | 0.573970 | 5.2:-77485584 | MS.gene030045:CDS |
GCTTCCTCAATGTATGTCAA+TGG | 0.580504 | 5.2:+77483905 | None:intergenic |
TCGGCCATTGACATACATTG+AGG | 0.583131 | 5.2:-77483909 | MS.gene030045:CDS |
TATAGTTCAATCTCTTCACC+AGG | 0.584910 | 5.2:+77479433 | None:intergenic |
CCTGAAGAAGTTTCTCGGGG+AGG | 0.592582 | 5.2:+77478323 | None:intergenic |
ATCCTGAAAGAATGGAGCTA+CGG | 0.594545 | 5.2:-77482818 | MS.gene030045:intron |
TTCTCACGAGGTTGTTGACA+AGG | 0.603338 | 5.2:+77478146 | None:intergenic |
AGATAAATTCAACGCAGTCA+AGG | 0.604381 | 5.2:-77478236 | MS.gene030045:CDS |
TCACCCAAGAGGGAACAATA+CGG | 0.605634 | 5.2:-77485281 | MS.gene030045:CDS |
ATGCAATAATTCACCCAAGA+GGG | 0.609625 | 5.2:-77485291 | MS.gene030045:CDS |
GTATGAACACACATCACGAA+AGG | 0.611291 | 5.2:+77478925 | None:intergenic |
GAAAGTAGTTAATCAAATCG+AGG | 0.616767 | 5.2:-77485179 | MS.gene030045:CDS |
ATTAACATTTCAAGAAAACA+TGG | 0.618027 | 5.2:-77479091 | MS.gene030045:intron |
GCTGGTACCTTCATCACGAG+AGG | 0.618277 | 5.2:+77478513 | None:intergenic |
ATATTGTTTGATCCTTCAAG+AGG | 0.618754 | 5.2:-77484930 | MS.gene030045:CDS |
CCTTGCACAACAAATTGGAA+AGG | 0.619336 | 5.2:-77484496 | MS.gene030045:CDS |
AAATTGGCTGGTTATGAACC+TGG | 0.623703 | 5.2:-77479451 | MS.gene030045:CDS |
GGAAACTCCTCACTTTGCCA+TGG | 0.626731 | 5.2:+77484451 | None:intergenic |
GGGATTGTGCACATATTCGA+TGG | 0.628248 | 5.2:+77478862 | None:intergenic |
ACTAAACTAATAAGTGATTG+GGG | 0.628820 | 5.2:-77484978 | MS.gene030045:CDS |
TCAGATGTATTTGAAGCTGG+GGG | 0.633603 | 5.2:-77485477 | MS.gene030045:CDS |
TATTGTTTGATCCTTCAAGA+GGG | 0.640486 | 5.2:-77484929 | MS.gene030045:CDS |
ATGAACACACATCACGAAAG+GGG | 0.644459 | 5.2:+77478927 | None:intergenic |
GGAGAGGTTGAAGAAAGACT+GGG | 0.646292 | 5.2:-77484713 | MS.gene030045:CDS |
TTGTAGACCATGGCAAAGTG+AGG | 0.648672 | 5.2:-77484458 | MS.gene030045:CDS |
AGAACGGAATTATGCAGGAG+AGG | 0.649602 | 5.2:-77484729 | MS.gene030045:CDS |
TGAGAGGGCCAAAGTTACTG+AGG | 0.654535 | 5.2:-77477927 | MS.gene030045:CDS |
ACACCTTTATAATAGTGTAG+AGG | 0.656703 | 5.2:+77484650 | None:intergenic |
AAACTTCTTCAGGAATTGTG+GGG | 0.664988 | 5.2:-77478313 | MS.gene030045:CDS |
GATTCAGCTAGTCTGCCCGA+TGG | 0.665996 | 5.2:-77485229 | MS.gene030045:CDS |
GAGAGGGCCAAAGTTACTGA+GGG | 0.671207 | 5.2:-77477926 | MS.gene030045:CDS |
CTATTCACAGGCTAGATGGG+AGG | 0.671331 | 5.2:-77485600 | None:intergenic |
AGTCGATGCTATGATAGATG+GGG | 0.673669 | 5.2:-77478449 | MS.gene030045:CDS |
ATTTCTCTGACATTCTCACG+AGG | 0.678154 | 5.2:+77478134 | None:intergenic |
ATTCCTGAAGAAGTTTCTCG+GGG | 0.686088 | 5.2:+77478320 | None:intergenic |
GGATCAAACAATATACCAAG+AGG | 0.688434 | 5.2:+77484939 | None:intergenic |
TCTTCTTGAGTAGTGGAATG+GGG | 0.701580 | 5.2:+77482877 | None:intergenic |
CATGCAATAATTCACCCAAG+AGG | 0.706965 | 5.2:-77485292 | MS.gene030045:CDS |
AATTGAAGTAACATACACCG+AGG | 0.791873 | 5.2:-77484877 | MS.gene030045:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 77477880 | 77485607 | 77477880 | ID=MS.gene030045 |
chr5.2 | mRNA | 77477880 | 77485607 | 77477880 | ID=MS.gene030045.t1;Parent=MS.gene030045 |
chr5.2 | exon | 77485468 | 77485607 | 77485468 | ID=MS.gene030045.t1.exon1;Parent=MS.gene030045.t1 |
chr5.2 | CDS | 77485468 | 77485607 | 77485468 | ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1 |
chr5.2 | exon | 77485158 | 77485315 | 77485158 | ID=MS.gene030045.t1.exon2;Parent=MS.gene030045.t1 |
chr5.2 | CDS | 77485158 | 77485315 | 77485158 | ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1 |
chr5.2 | exon | 77484848 | 77485017 | 77484848 | ID=MS.gene030045.t1.exon3;Parent=MS.gene030045.t1 |
chr5.2 | CDS | 77484848 | 77485017 | 77484848 | ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1 |
chr5.2 | exon | 77484654 | 77484749 | 77484654 | ID=MS.gene030045.t1.exon4;Parent=MS.gene030045.t1 |
chr5.2 | CDS | 77484654 | 77484749 | 77484654 | ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1 |
chr5.2 | exon | 77484416 | 77484535 | 77484416 | ID=MS.gene030045.t1.exon5;Parent=MS.gene030045.t1 |
chr5.2 | CDS | 77484416 | 77484535 | 77484416 | ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1 |
chr5.2 | exon | 77483898 | 77484020 | 77483898 | ID=MS.gene030045.t1.exon6;Parent=MS.gene030045.t1 |
chr5.2 | CDS | 77483898 | 77484020 | 77483898 | ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1 |
chr5.2 | exon | 77482999 | 77483073 | 77482999 | ID=MS.gene030045.t1.exon7;Parent=MS.gene030045.t1 |
chr5.2 | CDS | 77482999 | 77483073 | 77482999 | ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1 |
chr5.2 | exon | 77482819 | 77482907 | 77482819 | ID=MS.gene030045.t1.exon8;Parent=MS.gene030045.t1 |
chr5.2 | CDS | 77482819 | 77482907 | 77482819 | ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1 |
chr5.2 | exon | 77479429 | 77479537 | 77479429 | ID=MS.gene030045.t1.exon9;Parent=MS.gene030045.t1 |
chr5.2 | CDS | 77479429 | 77479537 | 77479429 | ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1 |
chr5.2 | exon | 77479092 | 77479157 | 77479092 | ID=MS.gene030045.t1.exon10;Parent=MS.gene030045.t1 |
chr5.2 | CDS | 77479092 | 77479157 | 77479092 | ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1 |
chr5.2 | exon | 77478859 | 77479011 | 77478859 | ID=MS.gene030045.t1.exon11;Parent=MS.gene030045.t1 |
chr5.2 | CDS | 77478859 | 77479011 | 77478859 | ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1 |
chr5.2 | exon | 77477880 | 77478617 | 77477880 | ID=MS.gene030045.t1.exon12;Parent=MS.gene030045.t1 |
chr5.2 | CDS | 77477880 | 77478617 | 77477880 | ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1 |
Gene Sequence |
Protein sequence |