AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030045


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030045.t1 MTR_5g091550 87.992 483 49 1 1 474 1 483 0.0 868
MS.gene030045.t1 MTR_5g091550 86.957 483 49 2 1 474 1 478 0.0 851
MS.gene030045.t1 MTR_5g091450 57.467 750 239 10 2 677 3 746 0.0 762
MS.gene030045.t1 MTR_5g091180 60.299 670 231 9 15 677 42 683 0.0 723
MS.gene030045.t1 MTR_5g091430 62.227 503 182 4 180 676 3 503 0.0 583
MS.gene030045.t1 MTR_5g091530 61.520 408 128 5 59 462 2 384 4.20e-157 458
MS.gene030045.t1 MTR_5g091410 52.437 513 207 8 171 677 23 504 5.71e-149 444
MS.gene030045.t1 MTR_5g086700 66.788 274 84 3 147 418 539 807 2.16e-104 343
MS.gene030045.t1 MTR_5g086700 57.031 128 55 0 15 142 57 184 7.63e-42 164
MS.gene030045.t1 MTR_5g086700 66.788 274 84 3 147 418 539 807 2.73e-104 343
MS.gene030045.t1 MTR_5g086700 57.031 128 55 0 15 142 57 184 8.11e-42 164
MS.gene030045.t1 MTR_3g079840 65.328 274 88 3 147 418 534 802 6.47e-103 339
MS.gene030045.t1 MTR_3g079840 53.906 128 59 0 15 142 52 179 4.00e-40 159
MS.gene030045.t1 MTR_3g079840 65.328 274 88 3 147 418 535 803 6.63e-103 339
MS.gene030045.t1 MTR_3g079840 53.906 128 59 0 15 142 53 180 3.86e-40 159
MS.gene030045.t1 MTR_1g041240 57.455 275 109 4 147 418 534 803 2.37e-84 288
MS.gene030045.t1 MTR_1g041240 47.857 140 71 2 15 154 53 190 6.44e-36 145
MS.gene030045.t1 MTR_1g041240 57.455 275 109 4 147 418 536 805 2.42e-84 288
MS.gene030045.t1 MTR_1g041240 47.857 140 71 2 15 154 55 192 6.39e-36 145
MS.gene030045.t1 MTR_1g041240 57.455 275 109 4 147 418 535 804 2.47e-84 288
MS.gene030045.t1 MTR_1g041240 47.857 140 71 2 15 154 54 191 6.38e-36 145
MS.gene030045.t1 MTR_1g042160 29.018 224 148 5 17 233 11 230 1.08e-23 102
MS.gene030045.t1 MTR_7g107160 33.813 139 80 3 17 144 128 265 1.99e-20 95.1
MS.gene030045.t1 MTR_1g073790 36.296 135 76 5 20 150 63 191 6.93e-18 89.0
MS.gene030045.t1 MTR_7g107200 34.884 129 81 2 17 142 11 139 7.68e-18 86.3
MS.gene030045.t1 MTR_1g073800 35.556 135 79 5 20 150 50 180 7.94e-18 87.0
MS.gene030045.t1 MTR_8g006190 38.938 113 62 2 37 142 10 122 8.79e-18 87.0
MS.gene030045.t1 MTR_1g044450 36.296 135 76 5 20 150 66 194 1.10e-17 88.2
MS.gene030045.t1 MTR_3g106700 34.307 137 79 2 17 142 404 540 2.41e-17 87.4
MS.gene030045.t1 MTR_3g106700 28.767 146 91 4 2 138 50 191 1.60e-12 71.6
MS.gene030045.t1 MTR_4g123750 36.184 152 87 5 37 179 40 190 2.47e-16 80.9
MS.gene030045.t1 MTR_5g091460 71.429 42 12 0 180 221 3 44 8.64e-13 63.9
MS.gene030045.t1 MTR_8g006190 38.000 100 55 2 50 142 15 114 1.10e-12 70.9
MS.gene030045.t1 MTR_8g011730 27.692 130 89 3 17 142 12 140 3.52e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030045.t1 AT5G06600 57.439 289 100 7 147 433 535 802 1.25e-84 287
MS.gene030045.t1 AT5G06600 54.264 129 59 0 15 143 52 180 5.59e-39 155
MS.gene030045.t1 AT5G06600 57.439 289 100 7 147 433 534 801 6.92e-84 286
MS.gene030045.t1 AT5G06600 54.264 129 59 0 15 143 51 179 5.94e-39 155
MS.gene030045.t1 AT5G06600 57.439 289 100 7 147 433 535 802 7.57e-84 286
MS.gene030045.t1 AT5G06600 54.264 129 59 0 15 143 52 180 5.89e-39 155
MS.gene030045.t1 AT3G11910 57.299 274 109 4 147 418 533 800 6.00e-83 284
MS.gene030045.t1 AT3G11910 50.388 129 64 0 15 143 51 179 1.35e-37 151
MS.gene030045.t1 AT3G11910 57.299 274 109 4 147 418 533 800 6.00e-83 284
MS.gene030045.t1 AT3G11910 50.388 129 64 0 15 143 51 179 1.35e-37 151
MS.gene030045.t1 AT3G11910 57.299 274 109 4 147 418 532 799 6.63e-83 284
MS.gene030045.t1 AT3G11910 50.388 129 64 0 15 143 50 178 1.42e-37 150
MS.gene030045.t1 AT3G11910 57.299 274 109 4 147 418 532 799 6.63e-83 284
MS.gene030045.t1 AT3G11910 50.388 129 64 0 15 143 50 178 1.42e-37 150
MS.gene030045.t1 AT3G58250 41.085 129 72 2 18 142 9 137 8.91e-24 103
MS.gene030045.t1 AT3G58210 40.310 129 75 1 20 146 9 137 6.21e-22 97.8
MS.gene030045.t1 AT3G58270 37.795 127 79 0 20 146 9 135 1.11e-21 97.4
MS.gene030045.t1 AT3G58270 37.795 127 79 0 20 146 9 135 1.11e-21 97.4
MS.gene030045.t1 AT3G58270 37.795 127 79 0 20 146 9 135 1.11e-21 97.4
MS.gene030045.t1 AT3G58350 37.692 130 76 3 21 145 10 139 1.49e-20 93.2
MS.gene030045.t1 AT3G58350 37.692 130 76 3 21 145 10 139 1.49e-20 93.2
MS.gene030045.t1 AT1G31390 38.793 116 68 1 21 133 10 125 1.03e-19 90.1
MS.gene030045.t1 AT3G58410 35.200 125 78 1 18 142 7 128 1.26e-19 90.9
MS.gene030045.t1 AT3G58370 35.433 127 79 2 20 143 10 136 6.25e-19 88.6
MS.gene030045.t1 AT3G58360 38.710 124 74 1 21 142 10 133 1.32e-18 87.4
MS.gene030045.t1 AT3G58410 34.586 133 70 1 10 142 20 135 2.66e-18 87.0
MS.gene030045.t1 AT3G58340 33.071 127 85 0 20 146 9 135 1.48e-17 84.7
MS.gene030045.t1 AT3G58340 33.071 127 85 0 20 146 9 135 1.63e-17 84.7
MS.gene030045.t1 AT2G25320 36.567 134 73 3 20 142 406 538 2.09e-17 87.4
MS.gene030045.t1 AT2G25320 26.712 146 95 3 22 155 76 221 1.24e-12 72.0
MS.gene030045.t1 AT2G25320 36.567 134 73 3 20 142 405 537 2.13e-17 87.4
MS.gene030045.t1 AT2G25320 26.712 146 95 3 22 155 75 220 1.26e-12 72.0
MS.gene030045.t1 AT5G52330 33.103 145 89 4 21 162 22 161 3.60e-17 84.7
MS.gene030045.t1 AT5G52330 33.103 145 89 4 21 162 22 161 3.60e-17 84.7
MS.gene030045.t1 AT5G52330 33.103 145 89 4 21 162 22 161 3.60e-17 84.7
MS.gene030045.t1 AT2G25320 36.567 134 73 3 20 142 406 538 4.19e-17 86.7
MS.gene030045.t1 AT2G25320 26.712 146 95 3 22 155 76 221 1.49e-12 72.0
MS.gene030045.t1 AT2G05410 35.938 128 77 3 19 142 8 134 4.41e-17 83.2
MS.gene030045.t1 AT1G04300 41.284 109 58 3 20 125 70 175 1.54e-16 84.7
MS.gene030045.t1 AT3G17380 32.432 148 95 2 37 179 42 189 4.20e-16 80.1
MS.gene030045.t1 AT3G17380 30.952 126 83 2 20 142 176 300 7.54e-12 67.4
MS.gene030045.t1 AT5G43560 42.308 104 58 2 21 123 72 174 4.80e-16 82.8
MS.gene030045.t1 AT5G43560 42.308 104 58 2 21 123 72 174 4.80e-16 82.8
MS.gene030045.t1 AT3G58260 31.818 132 86 2 19 146 8 139 1.15e-15 79.0
MS.gene030045.t1 AT3G58290 34.028 144 83 3 10 142 2 144 1.53e-15 78.2
MS.gene030045.t1 AT2G05420 34.074 135 78 3 18 142 8 141 1.67e-15 78.2
MS.gene030045.t1 AT3G44790 34.615 130 78 3 16 142 2 127 3.97e-15 77.4
MS.gene030045.t1 AT3G27040 30.000 130 90 1 18 146 8 137 4.27e-15 76.6
MS.gene030045.t1 AT1G04300 39.316 117 57 4 20 125 70 183 5.92e-15 79.3
MS.gene030045.t1 AT2G01790 31.250 128 85 1 22 146 11 138 1.97e-14 74.7
MS.gene030045.t1 AT2G42460 33.846 130 82 3 18 146 8 134 2.00e-14 75.1
MS.gene030045.t1 AT1G31400 31.783 129 82 2 21 146 10 135 3.13e-14 73.9
MS.gene030045.t1 AT3G44800 32.576 132 88 1 16 146 2 133 4.69e-14 74.7
MS.gene030045.t1 AT3G58220 36.641 131 78 4 16 142 9 138 5.49e-14 73.9
MS.gene030045.t1 AT3G58220 36.641 131 78 4 16 142 9 138 6.27e-14 74.3
MS.gene030045.t1 AT3G58220 36.641 131 78 4 16 142 9 138 6.35e-14 72.8
MS.gene030045.t1 AT3G58220 36.641 131 78 4 16 142 9 138 6.40e-14 75.1
MS.gene030045.t1 AT3G58220 36.641 131 78 4 16 142 9 138 7.51e-14 73.9
MS.gene030045.t1 AT1G04300 43.478 92 46 3 37 125 68 156 2.89e-13 73.9
MS.gene030045.t1 AT2G25330 37.313 134 73 3 20 142 360 493 5.13e-13 72.8
MS.gene030045.t1 AT2G25330 29.457 129 80 4 22 142 50 175 5.41e-12 69.7
MS.gene030045.t1 AT5G26320 31.667 120 75 2 31 143 75 194 7.08e-13 70.9
MS.gene030045.t1 AT5G26260 33.333 111 69 2 37 142 82 192 3.80e-12 68.9
MS.gene030045.t1 AT3G58200 28.319 113 80 1 20 131 9 121 1.11e-11 67.0
MS.gene030045.t1 AT2G42480 28.800 125 82 4 20 140 8 129 2.07e-11 66.6
MS.gene030045.t1 AT5G26280 34.234 111 68 2 37 142 81 191 3.04e-11 65.9
MS.gene030045.t1 AT5G26280 34.234 111 68 2 37 142 100 210 3.24e-11 66.2
MS.gene030045.t1 AT2G04170 32.374 139 75 5 22 142 2 139 3.33e-11 65.5
MS.gene030045.t1 AT2G04170 32.374 139 75 5 22 142 2 139 3.33e-11 65.5
MS.gene030045.t1 AT2G04170 32.374 139 75 5 22 142 124 261 5.07e-11 65.5
MS.gene030045.t1 AT2G04170 35.577 104 60 3 37 134 151 253 5.23e-11 65.1
MS.gene030045.t1 AT2G04170 32.374 139 75 5 22 142 84 221 7.20e-11 65.1
MS.gene030045.t1 AT2G04170 32.374 139 75 5 22 142 124 261 8.63e-11 65.1
MS.gene030045.t1 AT2G04170 32.374 139 75 5 22 142 124 261 8.63e-11 65.1

Find 119 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACACTGCTGCGCATTTA+AGG 0.166306 5.2:-77484848 MS.gene030045:CDS
CTTAACAAAGTTAAATAAAT+TGG 0.179384 5.2:-77479467 MS.gene030045:CDS
TACCGTAGCTCCATTCTTTC+AGG 0.187261 5.2:+77482816 None:intergenic
ATCTTGACGGGTGCTCTTCT+TGG 0.239221 5.2:+77478081 None:intergenic
GTTTCGAGACTTCTTGTTCT+TGG 0.253666 5.2:+77478356 None:intergenic
GAGAGTTGAGTTGGTTTAGA+TGG 0.257143 5.2:+77477999 None:intergenic
CTGCTCGATTCCAGCGCTTT+TGG 0.261128 5.2:-77483970 MS.gene030045:CDS
CCATGAATGCAGTTAGAAAA+TGG 0.279567 5.2:-77479001 MS.gene030045:intron
GGGCAATTTAGAGACGTATT+TGG 0.318377 5.2:-77483048 MS.gene030045:CDS
CACTAAACTAATAAGTGATT+GGG 0.335351 5.2:-77484979 MS.gene030045:CDS
GAAGACCTTGCACAACAAAT+TGG 0.338298 5.2:-77484501 MS.gene030045:CDS
GACTTGTTCTAGTTGGTTAG+AGG 0.338734 5.2:+77478183 None:intergenic
GAAGTCGATGCTATGATAGA+TGG 0.371729 5.2:-77478451 MS.gene030045:CDS
TCACTAAACTAATAAGTGAT+TGG 0.378451 5.2:-77484980 MS.gene030045:CDS
ACAGGCAGACACTTGACATT+TGG 0.392454 5.2:+77479123 None:intergenic
CTTTCAGAAAGATTCATCTA+TGG 0.394672 5.2:-77478966 MS.gene030045:CDS
AGAACAAGAAGTCTCGAAAC+TGG 0.400058 5.2:-77478353 MS.gene030045:CDS
AATGTTAATTTCATGTCAAC+AGG 0.400953 5.2:+77479105 None:intergenic
GTCTTCTTGAGTAGTGGAAT+GGG 0.401189 5.2:+77482876 None:intergenic
TCACCTCTACACTATTATAA+AGG 0.406555 5.2:-77484653 MS.gene030045:intron
TATTCAGATGTATTTGAAGC+TGG 0.406941 5.2:-77485480 MS.gene030045:CDS
GGTCCGTATTGTTCCCTCTT+GGG 0.407234 5.2:+77485278 None:intergenic
TCAATGCTTTATTATCTTGA+CGG 0.408066 5.2:+77478068 None:intergenic
CCTCCCCGAGAAACTTCTTC+AGG 0.415804 5.2:-77478323 MS.gene030045:CDS
ATCTTGACCCTCAGTAACTT+TGG 0.420067 5.2:+77477919 None:intergenic
ATGTATGTCAATGGCCGAAA+TGG 0.426546 5.2:+77483914 None:intergenic
ACGATACATATCGTCCATTT+CGG 0.428342 5.2:-77483928 MS.gene030045:CDS
CATGTATAAGATTGAATACC+TGG 0.436208 5.2:+77485543 None:intergenic
AGCAGGTATGCCGAACGCTT+TGG 0.436317 5.2:+77483988 None:intergenic
TTCACTAGATACCCTCTTGA+AGG 0.442518 5.2:+77484918 None:intergenic
AGAAGTTTCTCGGGGAGGTT+GGG 0.443223 5.2:+77478328 None:intergenic
GTTATATGATCCTGAAAGAA+TGG 0.443959 5.2:-77482826 MS.gene030045:CDS
TCGTGATGTGTGTTCATACT+TGG 0.445872 5.2:-77478921 MS.gene030045:CDS
AATTCCTGAAGAAGTTTCTC+GGG 0.449190 5.2:+77478319 None:intergenic
CAATGCTTTATTATCTTGAC+GGG 0.450921 5.2:+77478069 None:intergenic
TTGTGGGGTATTGTCTTTGA+AGG 0.452531 5.2:-77478298 MS.gene030045:CDS
ATCTGCAGTACACAGATAGA+TGG 0.453816 5.2:+77485249 None:intergenic
AGACACTGCTGCGCATTTAA+GGG 0.455146 5.2:-77484847 MS.gene030045:intron
CAATTCCTGAAGAAGTTTCT+CGG 0.455853 5.2:+77478318 None:intergenic
TGGTCCGTATTGTTCCCTCT+TGG 0.459480 5.2:+77485277 None:intergenic
CAGCTAGTCTGCCCGATGGT+TGG 0.460749 5.2:-77485225 MS.gene030045:CDS
AGGAGAGGTTGAAGAAAGAC+TGG 0.461321 5.2:-77484714 MS.gene030045:CDS
ACAAAGTTAAATAAATTGGC+TGG 0.463059 5.2:-77479463 MS.gene030045:CDS
AGCAGTGTCTTTCTCATCCT+CGG 0.466577 5.2:+77484860 None:intergenic
AGACACTGACTTGTTCTAGT+TGG 0.473955 5.2:+77478176 None:intergenic
GAAGAGGTTGCCAAAGCGTT+CGG 0.476619 5.2:-77483998 MS.gene030045:CDS
GTTACAGATGGCAGTTATGT+TGG 0.478233 5.2:-77479529 MS.gene030045:intron
AAGAAGTTTCTCGGGGAGGT+TGG 0.478508 5.2:+77478327 None:intergenic
ATTCAGATGTATTTGAAGCT+GGG 0.481685 5.2:-77485479 MS.gene030045:CDS
TGTCTTCTTGAGTAGTGGAA+TGG 0.490972 5.2:+77482875 None:intergenic
CCTTTCCAATTTGTTGTGCA+AGG 0.491291 5.2:+77484496 None:intergenic
AGAAACTTCTTCAGGAATTG+TGG 0.491691 5.2:-77478315 MS.gene030045:CDS
GAAACTTCTTCAGGAATTGT+GGG 0.494751 5.2:-77478314 MS.gene030045:CDS
AACTTTGTTAAGATTTGTGA+TGG 0.495239 5.2:+77479478 None:intergenic
CAGGTATTCAATCTTATACA+TGG 0.496385 5.2:-77485542 MS.gene030045:CDS
GATAAGTACTCTGTGACAAA+AGG 0.496629 5.2:-77485157 MS.gene030045:intron
CACAAGAACGTCATACCTCT+TGG 0.498075 5.2:-77484954 MS.gene030045:CDS
GAGCATCAAGAGAGTTGAGT+TGG 0.500938 5.2:+77477990 None:intergenic
TACATATGTGCTCCAACCAT+CGG 0.506808 5.2:+77485213 None:intergenic
AGAACTTCTCTTACAGCTCC+AGG 0.507727 5.2:-77485561 MS.gene030045:CDS
AAGTCGATGCTATGATAGAT+GGG 0.508375 5.2:-77478450 MS.gene030045:CDS
TATTGTCTTTGAAGGAGACT+TGG 0.509642 5.2:-77478290 MS.gene030045:CDS
TTTGTAGAACGGAATTATGC+AGG 0.511821 5.2:-77484734 MS.gene030045:intron
ACATATGTGCTCCAACCATC+GGG 0.511979 5.2:+77485214 None:intergenic
TACACAGATAGATGGACAAA+TGG 0.519840 5.2:+77485257 None:intergenic
TTTGGAAGTGGAGCGTGGGC+TGG 0.524148 5.2:-77482998 MS.gene030045:intron
TATGAACACACATCACGAAA+GGG 0.524828 5.2:+77478926 None:intergenic
GCACAAGCGTTATCCTTATG+TGG 0.526993 5.2:-77478891 MS.gene030045:CDS
TCGATGGATGAAGCCACATA+AGG 0.527157 5.2:+77478878 None:intergenic
GACTGTGTCTTCTTGAGTAG+TGG 0.529529 5.2:+77482870 None:intergenic
GCTTATCAGTACAGTTTACA+AGG 0.543104 5.2:+77479500 None:intergenic
TTGGTTGAAAACTTATCTGA+AGG 0.551179 5.2:-77478271 MS.gene030045:CDS
TTGCCCATAGCCAAAAGCGC+TGG 0.551602 5.2:+77483960 None:intergenic
ATAGAGACCTCTCGTGATGA+AGG 0.553772 5.2:-77478520 MS.gene030045:CDS
CAAAAGCGCTGGAATCGAGC+AGG 0.557203 5.2:+77483971 None:intergenic
TGAAGCTCAACAGTCAAAAG+TGG 0.560417 5.2:-77478545 MS.gene030045:CDS
CGAATATGTGCACAATCCCC+AGG 0.562771 5.2:-77478858 MS.gene030045:intron
CAGATGGCAGTTATGTTGGA+AGG 0.568939 5.2:-77479525 MS.gene030045:intron
TGAAGAGATTGAACTATATG+AGG 0.568948 5.2:-77479428 MS.gene030045:intron
TTCAGATGTATTTGAAGCTG+GGG 0.572003 5.2:-77485478 MS.gene030045:CDS
TGGGAGGTAGCAAATATGAG+AGG 0.573970 5.2:-77485584 MS.gene030045:CDS
GCTTCCTCAATGTATGTCAA+TGG 0.580504 5.2:+77483905 None:intergenic
TCGGCCATTGACATACATTG+AGG 0.583131 5.2:-77483909 MS.gene030045:CDS
TATAGTTCAATCTCTTCACC+AGG 0.584910 5.2:+77479433 None:intergenic
CCTGAAGAAGTTTCTCGGGG+AGG 0.592582 5.2:+77478323 None:intergenic
ATCCTGAAAGAATGGAGCTA+CGG 0.594545 5.2:-77482818 MS.gene030045:intron
TTCTCACGAGGTTGTTGACA+AGG 0.603338 5.2:+77478146 None:intergenic
AGATAAATTCAACGCAGTCA+AGG 0.604381 5.2:-77478236 MS.gene030045:CDS
TCACCCAAGAGGGAACAATA+CGG 0.605634 5.2:-77485281 MS.gene030045:CDS
ATGCAATAATTCACCCAAGA+GGG 0.609625 5.2:-77485291 MS.gene030045:CDS
GTATGAACACACATCACGAA+AGG 0.611291 5.2:+77478925 None:intergenic
GAAAGTAGTTAATCAAATCG+AGG 0.616767 5.2:-77485179 MS.gene030045:CDS
ATTAACATTTCAAGAAAACA+TGG 0.618027 5.2:-77479091 MS.gene030045:intron
GCTGGTACCTTCATCACGAG+AGG 0.618277 5.2:+77478513 None:intergenic
ATATTGTTTGATCCTTCAAG+AGG 0.618754 5.2:-77484930 MS.gene030045:CDS
CCTTGCACAACAAATTGGAA+AGG 0.619336 5.2:-77484496 MS.gene030045:CDS
AAATTGGCTGGTTATGAACC+TGG 0.623703 5.2:-77479451 MS.gene030045:CDS
GGAAACTCCTCACTTTGCCA+TGG 0.626731 5.2:+77484451 None:intergenic
GGGATTGTGCACATATTCGA+TGG 0.628248 5.2:+77478862 None:intergenic
ACTAAACTAATAAGTGATTG+GGG 0.628820 5.2:-77484978 MS.gene030045:CDS
TCAGATGTATTTGAAGCTGG+GGG 0.633603 5.2:-77485477 MS.gene030045:CDS
TATTGTTTGATCCTTCAAGA+GGG 0.640486 5.2:-77484929 MS.gene030045:CDS
ATGAACACACATCACGAAAG+GGG 0.644459 5.2:+77478927 None:intergenic
GGAGAGGTTGAAGAAAGACT+GGG 0.646292 5.2:-77484713 MS.gene030045:CDS
TTGTAGACCATGGCAAAGTG+AGG 0.648672 5.2:-77484458 MS.gene030045:CDS
AGAACGGAATTATGCAGGAG+AGG 0.649602 5.2:-77484729 MS.gene030045:CDS
TGAGAGGGCCAAAGTTACTG+AGG 0.654535 5.2:-77477927 MS.gene030045:CDS
ACACCTTTATAATAGTGTAG+AGG 0.656703 5.2:+77484650 None:intergenic
AAACTTCTTCAGGAATTGTG+GGG 0.664988 5.2:-77478313 MS.gene030045:CDS
GATTCAGCTAGTCTGCCCGA+TGG 0.665996 5.2:-77485229 MS.gene030045:CDS
GAGAGGGCCAAAGTTACTGA+GGG 0.671207 5.2:-77477926 MS.gene030045:CDS
CTATTCACAGGCTAGATGGG+AGG 0.671331 5.2:-77485600 None:intergenic
AGTCGATGCTATGATAGATG+GGG 0.673669 5.2:-77478449 MS.gene030045:CDS
ATTTCTCTGACATTCTCACG+AGG 0.678154 5.2:+77478134 None:intergenic
ATTCCTGAAGAAGTTTCTCG+GGG 0.686088 5.2:+77478320 None:intergenic
GGATCAAACAATATACCAAG+AGG 0.688434 5.2:+77484939 None:intergenic
TCTTCTTGAGTAGTGGAATG+GGG 0.701580 5.2:+77482877 None:intergenic
CATGCAATAATTCACCCAAG+AGG 0.706965 5.2:-77485292 MS.gene030045:CDS
AATTGAAGTAACATACACCG+AGG 0.791873 5.2:-77484877 MS.gene030045:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr5.2 gene 77477880 77485607 77477880 ID=MS.gene030045
chr5.2 mRNA 77477880 77485607 77477880 ID=MS.gene030045.t1;Parent=MS.gene030045
chr5.2 exon 77485468 77485607 77485468 ID=MS.gene030045.t1.exon1;Parent=MS.gene030045.t1
chr5.2 CDS 77485468 77485607 77485468 ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1
chr5.2 exon 77485158 77485315 77485158 ID=MS.gene030045.t1.exon2;Parent=MS.gene030045.t1
chr5.2 CDS 77485158 77485315 77485158 ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1
chr5.2 exon 77484848 77485017 77484848 ID=MS.gene030045.t1.exon3;Parent=MS.gene030045.t1
chr5.2 CDS 77484848 77485017 77484848 ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1
chr5.2 exon 77484654 77484749 77484654 ID=MS.gene030045.t1.exon4;Parent=MS.gene030045.t1
chr5.2 CDS 77484654 77484749 77484654 ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1
chr5.2 exon 77484416 77484535 77484416 ID=MS.gene030045.t1.exon5;Parent=MS.gene030045.t1
chr5.2 CDS 77484416 77484535 77484416 ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1
chr5.2 exon 77483898 77484020 77483898 ID=MS.gene030045.t1.exon6;Parent=MS.gene030045.t1
chr5.2 CDS 77483898 77484020 77483898 ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1
chr5.2 exon 77482999 77483073 77482999 ID=MS.gene030045.t1.exon7;Parent=MS.gene030045.t1
chr5.2 CDS 77482999 77483073 77482999 ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1
chr5.2 exon 77482819 77482907 77482819 ID=MS.gene030045.t1.exon8;Parent=MS.gene030045.t1
chr5.2 CDS 77482819 77482907 77482819 ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1
chr5.2 exon 77479429 77479537 77479429 ID=MS.gene030045.t1.exon9;Parent=MS.gene030045.t1
chr5.2 CDS 77479429 77479537 77479429 ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1
chr5.2 exon 77479092 77479157 77479092 ID=MS.gene030045.t1.exon10;Parent=MS.gene030045.t1
chr5.2 CDS 77479092 77479157 77479092 ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1
chr5.2 exon 77478859 77479011 77478859 ID=MS.gene030045.t1.exon11;Parent=MS.gene030045.t1
chr5.2 CDS 77478859 77479011 77478859 ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1
chr5.2 exon 77477880 77478617 77477880 ID=MS.gene030045.t1.exon12;Parent=MS.gene030045.t1
chr5.2 CDS 77477880 77478617 77477880 ID=cds.MS.gene030045.t1;Parent=MS.gene030045.t1
Gene Sequence

>MS.gene030045

ATGGGAGGTAGCAAATATGAGAGGAGAACTTCTCTTACAGCTCCAGGTATTCAATCTTATACATGGAGAACTGAAAGATTTTCTCGTGTGAGAGCGACAGTACTCTATTCAGATGTATTTGAAGCTGGGGGCTATAAATGGTATTGTGCTTACTCTATTCATGTTGTTCATCTTCCTATTTTAGTAGACATGCTATATTATGTAATAGTCGGCTCTATCTATTCCGGGAAGTGATTTTGTTGTAATTGTTATTTTAGTTCCTTCTCATGTTTTTTATTTTCACTCTGAGCAGGCATGCAATAATTCACCCAAGAGGGAACAATACGGACCATTTGTCCATCTATCTGTGTACTGCAGATTCAGCTAGTCTGCCCGATGGTTGGAGCACATATGTAGAGTTTACTTTGAAAGTAGTTAATCAAATCGAGGATAAGTACTCTGTGACAAAAGGTACCATATTCAATCTGTTCCTTACAGTTGTTACAAACGAACTACCATGCATGTATGTTGAAATTCAGACCAAATGTGGAAATGCACATAATTTTTGAGCATAGCTGTGTTACTTTGGTAACTTTGTTTGCACTATGTAGTTGCGAAGCACAAATTCACTAAACTAATAAGTGATTGGGGTCACAAGAACGTCATACCTCTTGGTATATTGTTTGATCCTTCAAGAGGGTATCTAGTGAATGATACTCTTGTAGTTGAAATTGAAGTAACATACACCGAGGATGAGAAAGACACTGCTGCGCATTTAAGGGTAAGTAGATATTCTTATGTAATTTAGGGCCTAAATTAAACCAAAGCTCTAATTGCCACTAACATGTTTATTCTGGAAAATCTGCACTGAATTTGTAGAACGGAATTATGCAGGAGAGGTTGAAGAAAGACTGGGAAGTAAAAAAACTCAAAAATAAAGAAAAGGAAGATGCTCACCTCTACACTATTATAAAGGTGTTCTGAGCTTGCTTCACTATAAATTAGTATTGTTTGTATTTTGAAACATGCTGTTAATTGCTCAATCAGACTGTATTTATATTTATTTATACCGATAACACATAATACTTCTTAGGTGATACGAGATGAAGACCTTGCACAACAAATTGGAAAGGATATATATTTTAATCTTGTAGACCATGGCAAAGTGAGGAGTTTCCGTGTTCAAAAGCAGACATCATTTAACGTTTTCAAGGTATCAACATCAATTACACTATTACAACGGGAAAATTAGAGAAAACGGAATCTTGTTAATTGATGATTGAAGTACAAGAACTAATATGATTATATTGACTAAGCCTAATAACTCGTAATCAAGAAAAACAAGGATCAGATCTTTCCTAATAATTGGCACCAATCAAACCTGAGACCATCAGAGGAGCACTCTTCAAAGTACTAAAATATTAAAAACATGATGCTTTAGTTGGAAGGAGAAAAAAGTCGTCATATGAATAATCTGTGGTTTTTATGCTTTTGATGTTGTAATTTATAATGTAATAATCGTTTATGAAGTTTCTGATGATTATTCAACAGATGTGTTATTTTTGTAAGTTTGATTTTTCTGTCTGATTGCTAATATGTGATATGTAGGAAGAGGTTGCCAAAGCGTTCGGCATACCTGCTCGATTCCAGCGCTTTTGGCTATGGGCAAAGCGTCTAAACGATACATATCGTCCATTTCGGCCATTGACATACATTGAGGAAGCAGCACCTGTAAATTTATTATTTTGAATATTATTTTGCTCATATACCCCCTTCAAGCTTCTTATTTTGTGACCTTTTCATTTCTGATTGCTTGCTTTTAGGAAAATGTTAGTTTTTTTATTTTAAAAAAAAAAACTTAGAGCTTCTTTTCCCCCACATTTATGTTTTATGTTGAATCAAATTCATGACATTTTATATCAACCTGCTAATATAATGTTTGCCATGACTGATAGCATTATAATAAGGTTGTCAAAATTGAGAATTTAGGCAAACTTGTTTTGCCTATATGAAATGGACTCTTAAACTCAACTTGTAAACCCATACGAGTTTGAGTTTACCTCCTCAAAATTAAAGAAAATAAATTCTTTTAAACTCAATTATAAAGGAAAAAACTGACATGAACAAAATCAAGTTACAAAGAAGAAAACGTACCGAATGTGAAAACTGAGATGAAAAAAAGATATAATCTTTTAAAAATTTCCTGCGAGTTTATCAAGCTCACTGCGGGTACAAGTTTACAGCCGAGTGTACTTAAAATTGATACCTAGACTTACAGATAACTCGCAATTGTAACAACCTTGCATTGAATTTCAGTTTTTGTGCCAGACTAACAGTAATTCTACATGCGTTAGCTTTGTTTATCTTCATTTTCCATCTTTGTCTACCTTCCTTTTATTTCTTTTAATATGCAACATATGCAAGTGATTTTTTGTATGGACTATTTTGGATCTTATAGTTTTTTTTTTTCTTTTCGAATTGGAGATTCATTGTCTCCTCAGCATACCATCTGAAGTTTTTTGTGTTTTTTTTCTACATTTTGAATGAAATTGCAGGTCGGGCAATTTAGAGACGTATTTGGTATTCACATAGCAGAATTAGAATTGTTTTTGGAAGTGGAGCGTGGGCTGGTAACGTTTATATTATGAATTTGTATACTATTTTGATAGCATGAAACATCATTCAAGCATAGTCCTGTTGACAAACTACATTATTATTTAGGATTTACGCCCCATTCCACTACTCAAGAAGACACAGTCTGATATATTACTTTTTTTCAAGTTATATGATCCTGAAAGAATGGAGCTACGGTACTGAGTAATTTCTTGTGTATTTTTAACATATGTTGTGGTAAAAGATGGACCTTAGTTGACATCAAATGTATTTCCCTTTGATGGTGTAACGCCCTCCTTTTTATTTAATTATTTTAAATGAGTTTTAGAATATATTTATATGATTAGTGTGATTTATAAGATTTATGTGATTTATATGATTTTAGGGAAATTTATGAGACGTTTTAACTTATTTTATTGTTTAATAAAATAAGATTCGAAAATAAAATAAATATTAAGTTGTGGGGTTATTTTGTGTAGAAATATATTTGTTATTTGATGAAGAGATATATTTGTTATTTTGTGTAGAAATATATATATATTATTTGGTGTGGAAATATATTTGTTATTTTGTGTAGAAATATATATGTTATTTGGTGTAGAAATATATTTGTTATTTTGTGTGAAAATATATATGTTATTTAATGTAGAAATATATTTGTTATTTGTTAGAGATATATTTGTTATTGGTGTATTATTATTATTAAGTGGGGGAGAGATATATTTAATTTAGAAATAAATAAGATTATGAGGAATAGAGTAGTTTTGAGGTGTAAGAGAAATAAGAAGGGGGTTAGAATAGAAAGAAGAATAAGTTGTTGGGACTAAATAGATTTGGGAAGAATATTTTAGTATTATAAATAGAGAAGCTTAGGTTAGAAAGAGTTTACCGGAAACCGCTTTTTGGAAAAGAGGAGAACAAGAAAGAAGAGAAGAGGAGAGAAAAGTCAAGAGAAGAGGAGAAGACCTTAGGAAAGAAGAATGCTGCCGCTGATTCAGGAATTAATCTAAGGTGAGGGTGAGACTATCTTGCATTAATATTAAGTTGTTAAATCATTATATTACATCTAACAAGTTGGGGAGAGTTTGTGAGAATTTGAGAATTAGGGTTTTGAGAGAGTTTTGATGATTAGATGATGAAAACCTGTTGAATTGATGTAGAAATTGTATACAGTCCTTAGATAACCCATAGGATGATTATTGGATGTAGTTTTGAGGTTAAAACCATGGAATTGGATGAGATGTTGGTGAGTTTAAGAATTAGGGTTTAATAATTGTAATAGGTTGTTAATAGATTTGAGAACCCTTTGAATTTGCATACAGTAAATTGATGAATAATTAGTGTTCTAATGATAGGGCAATCATAGGGTAATGATTAGGGTCAAGTTTGGAGAGTATTGGATCGAATAAGAAGTGGAAAAGATTTCCCCAAAGCGAAATCGCAGCTGAACTGCGATTTTGCTGTCAATGTGCAAAACGCGTTTTTATTGTCTCAGTTTGACAAGTTTAAGTTCCGAACTGGGTTTAGGTGTAAACACGAAAGTTGTAGGTATGGATGTTAGCTTTCTAATGCCGTTGGTCTCACGTCAATAGGATTTATAGAACTTGAGTTATGGTCAAATTACTGCACGTAGGTCACAGTGAATTTTTATGGACTTTCAGCACAACTTTTCCGAATTTAAAATAAAAACTGGTATTGATCGGTACAGAATTGGTCTTAGGCGTAAACATGAAAGTTTTAGATAATTTTGTTAGCTTTCTAGTGGCTTTGGTCTGACGTGAAAATTATGTTTGGTCTTTGAGTTATGATTAAAATACTACAGGGAGGTCTTAGCGAAATTGTACGGTGACAGCATTCTCTGTTTCATGTTTTTGCGTTTTGTTCATATGTTTCTGTTTTGAATTGATCTTTGTTCTAAACATGAAAGTTGTTGATATTTGTGATATCTTTCCAGTAGCTTTGGTTTGACATGAAAATATGTTGTGGATAATTTATTATGTTTTTACAAAGATACATAGTGAATTATTGTCGATGTTTAAATACGATGTTATATGAAGTTGTTTATGATTGATGAATATGATGTTTTAAGATGTTTATTATCATTTGATATTGTTATATTATGATATGACATGAATTATTTATGTGATCCATATGTTGTCAAGATGTTAAGATGTTAAGACGTTAAGATGATAAGAGTTGTTAAGTCGTCGAGTCGTTATGAAGTCATCAAGTTGTTAAGATGTTATGTTGTCAAGATATCAAGATGTTAGGATGTCATAGATGTTCATAAAGTTTCTAAGACGTAAGATGTTGAGTCCATGCATACTCATTTAAAGATGAGGGCTCATGCCCTGGAGCTTTTGCTCAACCACGACGATGGAGCTTTTGCTCAACCACGACGATGGAGCTTTTTGCTCAACCACGACGATGGAGCTTTTGCTCAACCACGACGATGAGGGCTTATGCCCTAGGAGTATATTTATGCTCAACCACGATGATGAGGGCTTATGCCCTAAAATGGTACCACATGCATTTGCATTTTCATGATGATCAAAGATGGTTTAAGACGTTAAGAGTTGCATAGTCGAGTCTAGATGCATTGTCAGGTCAAGTTGTTAAGATGTCAAGTTATCAAGATGTTAAGATGTTAAGATGTCAAGTTGATGAGCTATTAATGAAGTGCTTTATGAATGATTTATGATGCTTAAGATGATGAATGATTATGATGTGTATGATGATTGATTACGAAGTTGCTTATGATGATTGATTATGAAGTTGTTTATGATAAGATGCTATGTGATTTATGATAAGATGCTATGTGATTTATGGTATGATGCTATGTGATTTATGATATGATGCTACATATTTACTAATGATGATATGTGATGATGTATGTGATATTATTGATAACATAAGATGAAGTATATGACTAATATAGGAAGAATAGTGACACTAGTTAAGAAAGTTTAAGTTGTTAGATATGATTAATGAATTATAAGATGTTTAAGTTGTCGAATGTACTTTATATGATTTATATGCTTTATATTATTGTTTGAGAAATCTCACCCCTCTGCTTGGAAATGTTGCTCTTCGTATGGGTAACTTGCAGGTAATCAAGATTAGAGGCGTCGTGAGTGGACTCCTCACATGTGTGTCTAGGTGCTCTGATACGTAACGGGATGGACTTGACTTTACTTCTATTCCTTACGTAATGTTTATGAACTTTTATGAATAAATATTGAACTAAGACTTATGAGATTTTCTGATGAGGCCTGCGTGGCAAAGACTTTTTATGTTGAATGAACTAATTCCGCTGCGAAGTTTTGAATTACTTATGTTAAATGATTTTGAAGAATAAATTGTTATTTATTCAGTTTATGAATTTTTAAGAAGTGTAGCATTCCGTTTAAAGTGGAATTACTCTGATTTTTAATTATGAAATTTTTACGTTGGGAAAACGGGGTGTTACAGATGGCAGTTATGTTGGAAGGCTCCTTGTAAACTGTACTGATAAGCCATCACAAATCTTAACAAAGTTAAATAAATTGGCTGGTTATGAACCTGGTGAAGAGATTGAACTATATGAGGTTGGTTTGTGTTGTCTGATTTATTATTTAAGTTCAGAAGCCATATGCTTCGTTATCAAGTTCAGAAGGCATATGCTCCATAAATTTTTGATGTTCAGAAGCGATAAGCTTCGTTATTAAGTTCGGGTCAAGCAGTCATGATTTCAGTTTAGTAACGAAACTTGTTCGTTATTAAGTTCTATTAAAATTTATCATTCTTGCATGACATACCAGAAGGGAAAGGACATTTTCTAATGGCGTTACTGAGTTAATTGGACCTACTGTATTGCAGGAAGTGTTTGAACCAAATGTCAAGTGTCTGCCTGTTGACATGAAATTAACATTTCAAGAAAACATGGTATAGCACACACCCAGTTGGCACACACTAAGTTACTGTACAACTGGTTATCTTATTGATTTGTATTTCCATGAATGCAGTTAGAAAATGGTGATATTATATGCTTTCAGAAAGATTCATCTATGGATATTGTGAAACAAATCCCCTTTCGTGATGTGTGTTCATACTTGGCATATGTGCACAAGCGTTATCCTTATGTGGCTTCATCCATCGAATATGTGCACAATCCCCAGGTATTTTCTGTATGTGGTTTAGTTAAAAACAATTTGTTTCGTCAAATGTGATACAAAAATGAAAGCTACCCATTGATTCTTATCATGTTTCTAGGCGTATCTTGATCTGAATGTTTTTTCCTTGTTCAGGCTCCTTTTTGTCCCTCAGGCATAGAATCTGAAGATGAAGATTCATCGGAAGAGGAATCTGAAGAAAAAGATTCATCGGAAGAGGAATCTGAAGAAAAAGATTCATCGGAAGAGCAAAACGAAAAACATAACAGCTGAAGAAACGAATGTTGACAAAATCATTGAAGCTCAACAGTCAAAAGTGGTCATAGAGACCTCTCGTGATGAAGGTACCAGCAAAGCCAACGCTTCAAAATTCGTCATCAAAGACTTGAAAGAAGTCGATGCTATGATAGATGGGGATGTCATTGCTGCTATCGACAGAGTTTTATTAGAAGGGATTACTATTTCCTTAAAATCTCAGCATTCTGTCCAAGAACAAGAAGTCTCGAAACTGGATCCCAACCTCCCCGAGAAACTTCTTCAGGAATTGTGGGGTATTGTCTTTGAAGGAGACTTGGTTGAAAACTTATCTGAAGGTCTCTTTACTAAAGATAAATTCAACGCAGTCAAGGAAAAAATTGACACTAATGCTGACTTGTTTTCCTCTAACCAACTAGAACAAGTCAGTGTCTTTGTTGACCTTGTCAACAACCTCGTGAGAATGTCAGAGAAATGCAAAATTTTGACAAAGGAGCTAGACTCAGCCAAGAAGAGCACCCGTCAAGATAATAAAGCATTGAAAGAAACAAGACAAAAAATATTGATCTCAAGGACTTTCTTCATAAACCATCTAAACCAACTCAACTCTCTTGATGCTCAGATTGCTGATCTTAATGCCAAGCTTGAAAAACTACAAGTTGAGAGGGCCAAAGTTACTGAGGGTCAAGATCAAGAGAAAGATAAGATCGCATCTTTGAACAAAAGTTAA

Protein sequence

>MS.gene030045.t1

MGGSKYERRTSLTAPGIQSYTWRTERFSRVRATVLYSDVFEAGGYKWHAIIHPRGNNTDHLSIYLCTADSASLPDGWSTYVEFTLKVVNQIEDKYSVTKVAKHKFTKLISDWGHKNVIPLGILFDPSRGYLVNDTLVVEIEVTYTEDEKDTAAHLRNGIMQERLKKDWEVKKLKNKEKEDAHLYTIIKVIRDEDLAQQIGKDIYFNLVDHGKVRSFRVQKQTSFNVFKEEVAKAFGIPARFQRFWLWAKRLNDTYRPFRPLTYIEEAAPVGQFRDVFGIHIAELELFLEVERGLDLRPIPLLKKTQSDILLFFKLYDPERMELRYVGRLLVNCTDKPSQILTKLNKLAGYEPGEEIELYEEVFEPNVKCLPVDMKLTFQENMLENGDIICFQKDSSMDIVKQIPFRDVCSYLAYVHKRYPYVASSIEYVHNPQSKTKNITAEETNVDKIIEAQQSKVVIETSRDEGTSKANASKFVIKDLKEVDAMIDGDVIAAIDRVLLEGITISLKSQHSVQEQEVSKLDPNLPEKLLQELWGIVFEGDLVENLSEGLFTKDKFNAVKEKIDTNADLFSSNQLEQVSVFVDLVNNLVRMSEKCKILTKELDSAKKSTRQDNKALKETRQKILISRTFFINHLNQLNSLDAQIADLNAKLEKLQVERAKVTEGQDQEKDKIASLNKS