Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057070.t1 | AET00383.1 | 94 | 520 | 29 | 1 | 1 | 518 | 30 | 549 | 9.70E-245 | 855.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057070.t1 | Q84WU2 | 56.0 | 257 | 108 | 4 | 2 | 254 | 560 | 815 | 1.4e-74 | 282.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057070.t1 | G7KD55 | 94.0 | 520 | 29 | 1 | 1 | 518 | 30 | 549 | 7.0e-245 | 855.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057070.t1 | MTR_5g091410 | 94.231 | 520 | 28 | 1 | 1 | 518 | 30 | 549 | 0.0 | 924 |
| MS.gene057070.t1 | MTR_5g091450 | 59.567 | 601 | 156 | 9 | 5 | 518 | 192 | 792 | 0.0 | 635 |
| MS.gene057070.t1 | MTR_5g091430 | 59.455 | 550 | 191 | 5 | 1 | 518 | 1 | 550 | 0.0 | 604 |
| MS.gene057070.t1 | MTR_5g091180 | 59.381 | 517 | 164 | 8 | 2 | 490 | 202 | 700 | 5.45e-180 | 523 |
| MS.gene057070.t1 | MTR_5g091550 | 67.361 | 288 | 67 | 4 | 6 | 267 | 178 | 464 | 1.95e-118 | 357 |
| MS.gene057070.t1 | MTR_5g091550 | 67.361 | 288 | 67 | 4 | 6 | 267 | 183 | 469 | 2.36e-118 | 357 |
| MS.gene057070.t1 | MTR_5g086700 | 70.930 | 258 | 71 | 3 | 5 | 258 | 569 | 826 | 2.37e-114 | 364 |
| MS.gene057070.t1 | MTR_5g086700 | 70.930 | 258 | 71 | 3 | 5 | 258 | 569 | 826 | 2.44e-114 | 364 |
| MS.gene057070.t1 | MTR_5g091530 | 64.794 | 267 | 72 | 2 | 6 | 270 | 121 | 367 | 1.56e-111 | 336 |
| MS.gene057070.t1 | MTR_3g079840 | 67.442 | 258 | 80 | 3 | 5 | 258 | 564 | 821 | 7.36e-111 | 355 |
| MS.gene057070.t1 | MTR_3g079840 | 67.442 | 258 | 80 | 3 | 5 | 258 | 565 | 822 | 7.48e-111 | 355 |
| MS.gene057070.t1 | MTR_1g041240 | 58.687 | 259 | 102 | 3 | 5 | 258 | 564 | 822 | 1.19e-89 | 297 |
| MS.gene057070.t1 | MTR_1g041240 | 58.687 | 259 | 102 | 3 | 5 | 258 | 565 | 823 | 1.46e-89 | 297 |
| MS.gene057070.t1 | MTR_1g041240 | 58.687 | 259 | 102 | 3 | 5 | 258 | 566 | 824 | 1.49e-89 | 297 |
| MS.gene057070.t1 | MTR_5g091460 | 77.273 | 44 | 10 | 0 | 1 | 44 | 1 | 44 | 2.89e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057070.t1 | AT5G06600 | 56.667 | 270 | 111 | 4 | 2 | 267 | 562 | 829 | 1.38e-84 | 282 |
| MS.gene057070.t1 | AT5G06600 | 56.667 | 270 | 111 | 4 | 2 | 267 | 561 | 828 | 6.57e-84 | 281 |
| MS.gene057070.t1 | AT5G06600 | 56.667 | 270 | 111 | 4 | 2 | 267 | 562 | 829 | 7.33e-84 | 281 |
| MS.gene057070.t1 | AT3G11910 | 55.556 | 261 | 111 | 4 | 2 | 258 | 559 | 818 | 1.26e-83 | 281 |
| MS.gene057070.t1 | AT3G11910 | 55.556 | 261 | 111 | 4 | 2 | 258 | 559 | 818 | 1.26e-83 | 281 |
| MS.gene057070.t1 | AT3G11910 | 55.556 | 261 | 111 | 4 | 2 | 258 | 560 | 819 | 1.29e-83 | 281 |
| MS.gene057070.t1 | AT3G11910 | 55.556 | 261 | 111 | 4 | 2 | 258 | 560 | 819 | 1.29e-83 | 281 |
Find 83 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCAATCTCAACAATTT+TGG | 0.130984 | 5.3:+73425785 | None:intergenic |
| TGACGAATTAAAACTGTTTC+TGG | 0.158531 | 5.3:-73427456 | MS.gene057070:CDS |
| TACCGTAGCTCCTCTCTTTC+AGG | 0.184833 | 5.3:+73427258 | None:intergenic |
| CAGCTCAATTCCAGCGCTTT+TGG | 0.211067 | 5.3:-73427801 | MS.gene057070:CDS |
| ACAGGAAAACACTTGACTTT+TGG | 0.284130 | 5.3:+73426784 | None:intergenic |
| AGCAAATACATGAATCAAAA+TGG | 0.300931 | 5.3:+73425600 | None:intergenic |
| GAAAATGTTGCTAAAGAGTT+TGG | 0.324127 | 5.3:-73427829 | MS.gene057070:CDS |
| TCTATATCTGAGGGACAAAA+AGG | 0.328583 | 5.3:+73426422 | None:intergenic |
| AGGATAGCGGATATGTTTCT+TGG | 0.334831 | 5.3:+73426595 | None:intergenic |
| AATGTTAATTTCTTCTCAAC+AGG | 0.339875 | 5.3:+73426766 | None:intergenic |
| GAAATTTGCTGATCAAATTC+CGG | 0.348773 | 5.3:-73425682 | MS.gene057070:CDS |
| ACGAAGTTAAATAAATTTGC+TGG | 0.349648 | 5.3:-73427096 | MS.gene057070:CDS |
| GAAGACCTTGCAGAACAAAT+TGG | 0.355559 | 5.3:-73428629 | MS.gene057070:CDS |
| TTACTTGTACACTATTATAA+AGG | 0.377852 | 5.3:-73428802 | MS.gene057070:intron |
| ATTAAAACTGTTTCTGGAAG+TGG | 0.395656 | 5.3:-73427450 | MS.gene057070:CDS |
| TCCGGAGCACGAAACTGAAT+TGG | 0.406924 | 5.3:-73425664 | MS.gene057070:CDS |
| CCCACTGCACCACTCAATAT+CGG | 0.409594 | 5.3:-73427318 | MS.gene057070:CDS |
| TCCAATTCAGTTTCGTGCTC+CGG | 0.414367 | 5.3:+73425663 | None:intergenic |
| TTCCAATGATGATTCATCTT+CGG | 0.420701 | 5.3:+73426397 | None:intergenic |
| CAAGAGAGTTGAGTTCTGTT+TGG | 0.420830 | 5.3:+73425862 | None:intergenic |
| AATTGCTGAAGAAGTTGATC+AGG | 0.429649 | 5.3:+73426185 | None:intergenic |
| TCCATGTATGAAAGAACATT+AGG | 0.441990 | 5.3:+73426575 | None:intergenic |
| TCCTAATGTTCTTTCATACA+TGG | 0.442035 | 5.3:-73426576 | MS.gene057070:CDS |
| TGCAATCGACAAAGTTATAT+CGG | 0.444376 | 5.3:-73426252 | MS.gene057070:CDS |
| CCGTTCTATGGCAGTTATGC+TGG | 0.448933 | 5.3:-73427162 | MS.gene057070:intron |
| ATCCGAAGATGAATCATCAT+TGG | 0.450460 | 5.3:-73426399 | MS.gene057070:CDS |
| GTTGTTAGATCTTGATGATA+TGG | 0.461546 | 5.3:-73426294 | MS.gene057070:CDS |
| TGAAGAGATCGAACTTTATG+AGG | 0.464839 | 5.3:-73427061 | MS.gene057070:intron |
| AAATGGAGGGTTTGCCCTCA+AGG | 0.477451 | 5.3:+73425617 | None:intergenic |
| GAGAGTTGAGTTCTGTTTGG+TGG | 0.479747 | 5.3:+73425865 | None:intergenic |
| TAAAGTTCGATCTCTTCATC+AGG | 0.486377 | 5.3:+73427066 | None:intergenic |
| GCCGAGATGGTCGACATGTA+TGG | 0.498312 | 5.3:+73427758 | None:intergenic |
| TTGGTTGTAAAATTTAAACT+AGG | 0.511006 | 5.3:-73426137 | MS.gene057070:CDS |
| CATTTCCAATTTGTTCTGCA+AGG | 0.515390 | 5.3:+73428624 | None:intergenic |
| CTTGATCAATAGCGAGGCGA+TGG | 0.523992 | 5.3:+73425712 | None:intergenic |
| TCCGATATTGAGTGGTGCAG+TGG | 0.533670 | 5.3:+73427317 | None:intergenic |
| TCTGGAAGTGGAGCGTGGGC+TGG | 0.536325 | 5.3:-73427438 | MS.gene057070:intron |
| ATGGTAGATGTGGATGTCAT+TGG | 0.537197 | 5.3:-73426275 | MS.gene057070:CDS |
| AACTTCGTTAAGATTTCTGA+TGG | 0.538741 | 5.3:+73427111 | None:intergenic |
| AGCTAAGAAGAGCACCGACC+GGG | 0.542103 | 5.3:-73425949 | MS.gene057070:CDS |
| GAGCACCGACCGGGATAATG+AGG | 0.542312 | 5.3:-73425940 | MS.gene057070:CDS |
| TTTCCCATATCCAAAAGCGC+TGG | 0.542428 | 5.3:+73427791 | None:intergenic |
| ATCGACAAAGTTATATCGGA+AGG | 0.546426 | 5.3:-73426248 | MS.gene057070:CDS |
| GGAATATGTGTACAATCGCC+AGG | 0.551328 | 5.3:-73426555 | MS.gene057070:intron |
| GAAGGTCTACAAAACCTTGA+GGG | 0.554427 | 5.3:-73425631 | MS.gene057070:CDS |
| CAAAAGCGCTGGAATTGAGC+TGG | 0.558135 | 5.3:+73427802 | None:intergenic |
| CTGTTTCTGGAAGTGGAGCG+TGG | 0.563550 | 5.3:-73427443 | MS.gene057070:CDS |
| CCGATATTGAGTGGTGCAGT+GGG | 0.565192 | 5.3:+73427318 | None:intergenic |
| ACCATACATGTCGACCATCT+CGG | 0.571073 | 5.3:-73427759 | MS.gene057070:CDS |
| ATCTTCGGATTCTATATCTG+AGG | 0.572312 | 5.3:+73426412 | None:intergenic |
| TCTTCGGATTCTATATCTGA+GGG | 0.574584 | 5.3:+73426413 | None:intergenic |
| CATTCAATTCCTCATTATCC+CGG | 0.576614 | 5.3:+73425931 | None:intergenic |
| CCACTCAATATCGGAGAGGA+TGG | 0.576689 | 5.3:-73427309 | MS.gene057070:CDS |
| CAATGAATGCAGTTAGACAA+TGG | 0.576903 | 5.3:-73426656 | MS.gene057070:intron |
| ATGTGTGTCAAAAGCCGAGA+TGG | 0.577209 | 5.3:+73427745 | None:intergenic |
| CAATTCCTCATTATCCCGGT+CGG | 0.580942 | 5.3:+73425935 | None:intergenic |
| AGTAAACTTCAATGTAGTCA+AGG | 0.582753 | 5.3:-73426102 | MS.gene057070:CDS |
| GTTATATGATCCTGAAAGAG+AGG | 0.584929 | 5.3:-73427268 | MS.gene057070:CDS |
| CAGCTAAGAAGAGCACCGAC+CGG | 0.586462 | 5.3:-73425950 | MS.gene057070:CDS |
| TTCTGTTTGGTGGATGTCGA+GGG | 0.586793 | 5.3:+73425875 | None:intergenic |
| ATCCTGAAAGAGAGGAGCTA+CGG | 0.592917 | 5.3:-73427260 | MS.gene057070:intron |
| GTTCTGTTTGGTGGATGTCG+AGG | 0.599369 | 5.3:+73425874 | None:intergenic |
| TTGTAGACCTTGACAAAGTG+AGG | 0.603348 | 5.3:-73428586 | MS.gene057070:CDS |
| TCTTGATGATATGGTAGATG+TGG | 0.605563 | 5.3:-73426285 | MS.gene057070:CDS |
| AAATACATGAATCAAAATGG+AGG | 0.606725 | 5.3:+73425603 | None:intergenic |
| AATACATGAATCAAAATGGA+GGG | 0.610120 | 5.3:+73425604 | None:intergenic |
| ACTTTCTCAACAAAATTGAG+TGG | 0.612126 | 5.3:-73426013 | MS.gene057070:CDS |
| TGTTTCTGGAAGTGGAGCGT+GGG | 0.613081 | 5.3:-73427442 | MS.gene057070:CDS |
| TGAATTGGAAGGTCATGAGA+AGG | 0.617326 | 5.3:-73425649 | MS.gene057070:CDS |
| TCTATGGCAGTTATGCTGGA+AGG | 0.627842 | 5.3:-73427158 | MS.gene057070:intron |
| GGAAACTCCTCACTTTGTCA+AGG | 0.635577 | 5.3:+73428579 | None:intergenic |
| CCATCCTCTCCGATATTGAG+TGG | 0.642904 | 5.3:+73427309 | None:intergenic |
| AGAAGGTCTACAAAACCTTG+AGG | 0.643862 | 5.3:-73425632 | MS.gene057070:CDS |
| ATTGCTGAAGAAGTTGATCA+GGG | 0.647060 | 5.3:+73426186 | None:intergenic |
| GAGCACGAAACTGAATTGGA+AGG | 0.650443 | 5.3:-73425660 | MS.gene057070:CDS |
| TCGACAAAGTTATATCGGAA+GGG | 0.656260 | 5.3:-73426247 | MS.gene057070:CDS |
| ATGAAAGAACATTAGGATAG+CGG | 0.658992 | 5.3:+73426582 | None:intergenic |
| ACTTGACTTGATCAATAGCG+AGG | 0.661642 | 5.3:+73425706 | None:intergenic |
| ACAATTGAAAGAGCTTCACA+AGG | 0.683760 | 5.3:-73427480 | MS.gene057070:CDS |
| AATTAATGATATGATAGACG+AGG | 0.692673 | 5.3:-73426321 | MS.gene057070:CDS |
| ATTAACATTTGAAGATAACG+AGG | 0.703915 | 5.3:-73426752 | MS.gene057070:intron |
| TGCACCACTCAATATCGGAG+AGG | 0.716904 | 5.3:-73427313 | MS.gene057070:CDS |
| GCTGAAGAAGTTGATCAGGG+AGG | 0.758136 | 5.3:+73426189 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGAAATTAACATTTTAAT+TGG | - | chr5.3:73427725-73427744 | MS.gene057070:intron | 10.0% |
| !! | AAGATATTATAATACTTCTT+AGG | - | chr5.3:73425764-73425783 | MS.gene057070:CDS | 15.0% |
| !! | CTTTATAAAATTGAATTCTA+AGG | + | chr5.3:73426130-73426149 | None:intergenic | 15.0% |
| !!! | CTTCATAATTTATGATTTTT+TGG | - | chr5.3:73426782-73426801 | MS.gene057070:CDS | 15.0% |
| !! | ATAAATTATGAAGCTTAAAG+CGG | + | chr5.3:73426775-73426794 | None:intergenic | 20.0% |
| !! | GACAAACTTCATTATTATAT+AGG | - | chr5.3:73427078-73427097 | MS.gene057070:CDS | 20.0% |
| !! | TTACTTGTACACTATTATAA+AGG | - | chr5.3:73425625-73425644 | MS.gene057070:CDS | 20.0% |
| !! | TTCAATCCTTACTATTTATT+AGG | + | chr5.3:73426013-73426032 | None:intergenic | 20.0% |
| !! | TTGGTTGTAAAATTTAAACT+AGG | - | chr5.3:73428290-73428309 | MS.gene057070:intron | 20.0% |
| !!! | CCATCTTAGATTTTTATATT+CGG | + | chr5.3:73426163-73426182 | None:intergenic | 20.0% |
| !!! | CTAAAAGTATGTTTATAAGT+AGG | - | chr5.3:73426092-73426111 | MS.gene057070:CDS | 20.0% |
| !!! | CTACTTATAAACATACTTTT+AGG | + | chr5.3:73426094-73426113 | None:intergenic | 20.0% |
| !!! | TATAAAATTGAATTCTAAGG+TGG | + | chr5.3:73426127-73426146 | None:intergenic | 20.0% |
| !!! | TGATTTTATGTGATATATGT+AGG | - | chr5.3:73426576-73426595 | MS.gene057070:CDS | 20.0% |
| ! | AACCTTAAAAAGAAAATACC+TGG | + | chr5.3:73427893-73427912 | None:intergenic | 25.0% |
| ! | AACTTACGAAAATAACAGAT+GGG | + | chr5.3:73426539-73426558 | None:intergenic | 25.0% |
| ! | AATACATTTGATGTCAACTA+AGG | + | chr5.3:73427244-73427263 | None:intergenic | 25.0% |
| ! | AATGTTAATTTCTTCTCAAC+AGG | + | chr5.3:73427664-73427683 | None:intergenic | 25.0% |
| ! | AATTAATGATATGATAGACG+AGG | - | chr5.3:73428106-73428125 | MS.gene057070:intron | 25.0% |
| ! | ACAAACAAAACAACATATCT+AGG | + | chr5.3:73425668-73425687 | None:intergenic | 25.0% |
| ! | ACGAAGTTAAATAAATTTGC+TGG | - | chr5.3:73427331-73427350 | MS.gene057070:intron | 25.0% |
| ! | AGAAACAGGATAAGAATAAA+TGG | + | chr5.3:73427945-73427964 | None:intergenic | 25.0% |
| ! | ATTAACATTTGAAGATAACG+AGG | - | chr5.3:73427675-73427694 | MS.gene057070:intron | 25.0% |
| ! | CAAACAAAACAACATATCTA+GGG | + | chr5.3:73425667-73425686 | None:intergenic | 25.0% |
| ! | CCGAATATAAAAATCTAAGA+TGG | - | chr5.3:73426160-73426179 | MS.gene057070:CDS | 25.0% |
| ! | GAAACAGGATAAGAATAAAT+GGG | + | chr5.3:73427944-73427963 | None:intergenic | 25.0% |
| ! | TAAATTATGAAGCTTAAAGC+GGG | + | chr5.3:73426774-73426793 | None:intergenic | 25.0% |
| ! | TGCTCTATATAATCACATTA+GGG | + | chr5.3:73425988-73426007 | None:intergenic | 25.0% |
| ! | TTGAATCTAATGATCTGTAA+AGG | - | chr5.3:73427554-73427573 | MS.gene057070:intron | 25.0% |
| !! | TTTATTCTTATCCTGTTTCT+AGG | - | chr5.3:73427945-73427964 | MS.gene057070:intron | 25.0% |
| !!! | ACCTACAATTTTAGTCAAAA+TGG | + | chr5.3:73426924-73426943 | None:intergenic | 25.0% |
| !!! | CCTACAATTTTAGTCAAAAT+GGG | + | chr5.3:73426923-73426942 | None:intergenic | 25.0% |
| !!! | TACAACCAAGTCTTTTTTAA+AGG | + | chr5.3:73428279-73428298 | None:intergenic | 25.0% |
| !!! | TATTTTAGATGCATCTTCAT+AGG | - | chr5.3:73426371-73426390 | MS.gene057070:CDS | 25.0% |
| !!! | TGTGATTTTAACATATGTTG+CGG | - | chr5.3:73427207-73427226 | MS.gene057070:intron | 25.0% |
| !!! | TTTTGACTAAAATTGTAGGT+TGG | - | chr5.3:73426924-73426943 | MS.gene057070:intron | 25.0% |
| AAAAATCACAATGCTCTAGT+TGG | - | chr5.3:73426418-73426437 | MS.gene057070:CDS | 30.0% | |
| AACTTCGTTAAGATTTCTGA+TGG | + | chr5.3:73427319-73427338 | None:intergenic | 30.0% | |
| ACTACAGATCATAGAGAAAT+TGG | + | chr5.3:73426884-73426903 | None:intergenic | 30.0% | |
| ACTTTCTCAACAAAATTGAG+TGG | - | chr5.3:73428414-73428433 | MS.gene057070:intron | 30.0% | |
| AGTAAACTTCAATGTAGTCA+AGG | - | chr5.3:73428325-73428344 | MS.gene057070:intron | 30.0% | |
| ATATGAGACTCTCAACAAAA+AGG | + | chr5.3:73426057-73426076 | None:intergenic | 30.0% | |
| ATGAAAGAACATTAGGATAG+CGG | + | chr5.3:73427848-73427867 | None:intergenic | 30.0% | |
| CAACTTACGAAAATAACAGA+TGG | + | chr5.3:73426540-73426559 | None:intergenic | 30.0% | |
| GAAAATGTTGCTAAAGAGTT+TGG | - | chr5.3:73426598-73426617 | MS.gene057070:CDS | 30.0% | |
| GTGCTCTATATAATCACATT+AGG | + | chr5.3:73425989-73426008 | None:intergenic | 30.0% | |
| TAATCAATTCACAACCAAAC+TGG | + | chr5.3:73426338-73426357 | None:intergenic | 30.0% | |
| TCAAATGTATTTCCGTTCTA+TGG | - | chr5.3:73427253-73427272 | MS.gene057070:intron | 30.0% | |
| TCCATGTATGAAAGAACATT+AGG | + | chr5.3:73427855-73427874 | None:intergenic | 30.0% | |
| TCCTAATGTTCTTTCATACA+TGG | - | chr5.3:73427851-73427870 | MS.gene057070:intron | 30.0% | |
| TGACGAATTAAAACTGTTTC+TGG | - | chr5.3:73426971-73426990 | MS.gene057070:intron | 30.0% | |
| TGCAATCGACAAAGTTATAT+CGG | - | chr5.3:73428175-73428194 | MS.gene057070:intron | 30.0% | |
| TTAACATATGTTGCGGTAAA+AGG | - | chr5.3:73427214-73427233 | MS.gene057070:intron | 30.0% | |
| TTCCAATGATGATTCATCTT+CGG | + | chr5.3:73428033-73428052 | None:intergenic | 30.0% | |
| ! | AGCTTCAATCTCAACAATTT+TGG | + | chr5.3:73428645-73428664 | None:intergenic | 30.0% |
| ! | GTTGTTAGATCTTGATGATA+TGG | - | chr5.3:73428133-73428152 | MS.gene057070:intron | 30.0% |
| ! | TATCGCCTTTAAAAAAGACT+TGG | - | chr5.3:73428271-73428290 | MS.gene057070:intron | 30.0% |
| ! | TTTTAAGCCGTATCTAATGT+GGG | + | chr5.3:73426284-73426303 | None:intergenic | 30.0% |
| ! | TTTTGTTGAGAGTCTCATAT+TGG | - | chr5.3:73426057-73426076 | MS.gene057070:CDS | 30.0% |
| ! | TTTTTATGAAATTTGGCAGC+AGG | + | chr5.3:73427431-73427450 | None:intergenic | 30.0% |
| !! | AAAATTGAATTCTAAGGTGG+AGG | + | chr5.3:73426124-73426143 | None:intergenic | 30.0% |
| !! | ATTAAAACTGTTTCTGGAAG+TGG | - | chr5.3:73426977-73426996 | MS.gene057070:intron | 30.0% |
| !! | GAAATTTGCTGATCAAATTC+CGG | - | chr5.3:73428745-73428764 | MS.gene057070:intron | 30.0% |
| !! | TGAATGTTGTTTCCTTGTTT+AGG | - | chr5.3:73427980-73427999 | MS.gene057070:intron | 30.0% |
| !! | TTTTTAAGCCGTATCTAATG+TGG | + | chr5.3:73426285-73426304 | None:intergenic | 30.0% |
| !!! | CATCTGTTATTTTCGTAAGT+TGG | - | chr5.3:73426538-73426557 | MS.gene057070:intron | 30.0% |
| !!! | CCCATTTTGACTAAAATTGT+AGG | - | chr5.3:73426920-73426939 | MS.gene057070:intron | 30.0% |
| ACAATTGAAAGAGCTTCACA+AGG | - | chr5.3:73426947-73426966 | MS.gene057070:intron | 35.0% | |
| AGCACGCCTAATAAATAGTA+AGG | - | chr5.3:73426004-73426023 | MS.gene057070:CDS | 35.0% | |
| ATCAGAGTCAATCCAAGATT+TGG | - | chr5.3:73426184-73426203 | MS.gene057070:CDS | 35.0% | |
| ATCCGAAGATGAATCATCAT+TGG | - | chr5.3:73428028-73428047 | MS.gene057070:intron | 35.0% | |
| ATCGACAAAGTTATATCGGA+AGG | - | chr5.3:73428179-73428198 | MS.gene057070:intron | 35.0% | |
| ATCTTCGGATTCTATATCTG+AGG | + | chr5.3:73428018-73428037 | None:intergenic | 35.0% | |
| ATTTCTTAGTATGTGCCAAC+CGG | + | chr5.3:73427713-73427732 | None:intergenic | 35.0% | |
| CAATGAATGCAGTTAGACAA+TGG | - | chr5.3:73427771-73427790 | MS.gene057070:CDS | 35.0% | |
| CATGCTTGAAAAACTACAAG+GGG | - | chr5.3:73428613-73428632 | MS.gene057070:CDS | 35.0% | |
| CATTCAATTCCTCATTATCC+CGG | + | chr5.3:73428499-73428518 | None:intergenic | 35.0% | |
| CCATGCTTGAAAAACTACAA+GGG | - | chr5.3:73428612-73428631 | MS.gene057070:CDS | 35.0% | |
| CTAATTTCCTGCACAACAAT+AGG | + | chr5.3:73427616-73427635 | None:intergenic | 35.0% | |
| GACAAAAAGGAACCTAAACA+AGG | + | chr5.3:73427995-73428014 | None:intergenic | 35.0% | |
| GTTATATGATCCTGAAAGAG+AGG | - | chr5.3:73427159-73427178 | MS.gene057070:intron | 35.0% | |
| TAAAGTTCGATCTCTTCATC+AGG | + | chr5.3:73427364-73427383 | None:intergenic | 35.0% | |
| TCATCGTTACTCTCTTTGAT+TGG | - | chr5.3:73425914-73425933 | MS.gene057070:CDS | 35.0% | |
| TCGACAAAGTTATATCGGAA+GGG | - | chr5.3:73428180-73428199 | MS.gene057070:intron | 35.0% | |
| TCTATATCTGAGGGACAAAA+AGG | + | chr5.3:73428008-73428027 | None:intergenic | 35.0% | |
| TCTTCGGATTCTATATCTGA+GGG | + | chr5.3:73428017-73428036 | None:intergenic | 35.0% | |
| TGAAGAGATCGAACTTTATG+AGG | - | chr5.3:73427366-73427385 | MS.gene057070:intron | 35.0% | |
| TTCAAGATAAGCCTAGAAAC+AGG | + | chr5.3:73427959-73427978 | None:intergenic | 35.0% | |
| TTGAGAGTCTCATATTGGAT+GGG | - | chr5.3:73426062-73426081 | MS.gene057070:CDS | 35.0% | |
| ! | AATTGCTGAAGAAGTTGATC+AGG | + | chr5.3:73428245-73428264 | None:intergenic | 35.0% |
| ! | ACAGGAAAACACTTGACTTT+TGG | + | chr5.3:73427646-73427665 | None:intergenic | 35.0% |
| ! | ATGACTTGTCAGAACAGAAA+GGG | - | chr5.3:73427506-73427525 | MS.gene057070:intron | 35.0% |
| ! | ATTGCTGAAGAAGTTGATCA+GGG | + | chr5.3:73428244-73428263 | None:intergenic | 35.0% |
| ! | CATTTCCAATTTGTTCTGCA+AGG | + | chr5.3:73425806-73425825 | None:intergenic | 35.0% |
| ! | CGCCAGGTATTTTCTTTTTA+AGG | - | chr5.3:73427888-73427907 | MS.gene057070:intron | 35.0% |
| ! | GACGTCATTTAACGTTTTCA+AGG | - | chr5.3:73425884-73425903 | MS.gene057070:CDS | 35.0% |
| ! | GATTGAAGTGCATTAACTTG+TGG | - | chr5.3:73426026-73426045 | MS.gene057070:CDS | 35.0% |
| ! | TATGACTTGTCAGAACAGAA+AGG | - | chr5.3:73427505-73427524 | MS.gene057070:intron | 35.0% |
| ! | TCTTGATGATATGGTAGATG+TGG | - | chr5.3:73428142-73428161 | MS.gene057070:intron | 35.0% |
| ! | TTTTCAAAGAACACGATGCA+AGG | + | chr5.3:73427472-73427491 | None:intergenic | 35.0% |
| AACGAGGTATAGTACATACC+CGG | - | chr5.3:73427691-73427710 | MS.gene057070:intron | 40.0% | |
| AATTGTGCCTATTGTTGTGC+AGG | - | chr5.3:73427606-73427625 | MS.gene057070:intron | 40.0% | |
| ACATATGTTGCGGTAAAAGG+TGG | - | chr5.3:73427217-73427236 | MS.gene057070:intron | 40.0% | |
| AGAAGGTCTACAAAACCTTG+AGG | - | chr5.3:73428795-73428814 | MS.gene057070:intron | 40.0% | |
| AGAGTCAATCCAAGATTTGG+TGG | - | chr5.3:73426187-73426206 | MS.gene057070:CDS | 40.0% | |
| ATGGTAGATGTGGATGTCAT+TGG | - | chr5.3:73428152-73428171 | MS.gene057070:intron | 40.0% | |
| CAAGAGAGTTGAGTTCTGTT+TGG | + | chr5.3:73428568-73428587 | None:intergenic | 40.0% | |
| CACTCAAGACTAGACATTTG+AGG | + | chr5.3:73426243-73426262 | None:intergenic | 40.0% | |
| GAAGACCTTGCAGAACAAAT+TGG | - | chr5.3:73425798-73425817 | MS.gene057070:CDS | 40.0% | |
| GAAGGTCTACAAAACCTTGA+GGG | - | chr5.3:73428796-73428815 | MS.gene057070:intron | 40.0% | |
| GAGATCGAACTTTATGAGGT+TGG | - | chr5.3:73427370-73427389 | MS.gene057070:intron | 40.0% | |
| GCCATGCTTGAAAAACTACA+AGG | - | chr5.3:73428611-73428630 | MS.gene057070:CDS | 40.0% | |
| GTAGAGTCCCACATTAGATA+CGG | - | chr5.3:73426274-73426293 | MS.gene057070:CDS | 40.0% | |
| GTCTCATATTGGATGGGATA+TGG | - | chr5.3:73426068-73426087 | MS.gene057070:CDS | 40.0% | |
| GTTGAGAGTCTCATATTGGA+TGG | - | chr5.3:73426061-73426080 | MS.gene057070:CDS | 40.0% | |
| TGAATTGGAAGGTCATGAGA+AGG | - | chr5.3:73428778-73428797 | MS.gene057070:intron | 40.0% | |
| TGAGACTCTCAACAAAAAGG+TGG | + | chr5.3:73426054-73426073 | None:intergenic | 40.0% | |
| TTGTAGACCTTGACAAAGTG+AGG | - | chr5.3:73425841-73425860 | MS.gene057070:CDS | 40.0% | |
| TTTCTTAGTATGTGCCAACC+GGG | + | chr5.3:73427712-73427731 | None:intergenic | 40.0% | |
| ! | AATTCCAGCGCTTTTGGATA+TGG | - | chr5.3:73426632-73426651 | MS.gene057070:CDS | 40.0% |
| ! | ACTTGACTTGATCAATAGCG+AGG | + | chr5.3:73428724-73428743 | None:intergenic | 40.0% |
| ! | ATTCCAGCGCTTTTGGATAT+GGG | - | chr5.3:73426633-73426652 | MS.gene057070:CDS | 40.0% |
| ! | GAGTCAATCCAAGATTTGGT+GGG | - | chr5.3:73426188-73426207 | MS.gene057070:CDS | 40.0% |
| ! | TTTGGTGGGTCATTTGGTAT+CGG | - | chr5.3:73426202-73426221 | MS.gene057070:CDS | 40.0% |
| !! | AATGTCTAGTCTTGAGTGTG+AGG | - | chr5.3:73426245-73426264 | MS.gene057070:CDS | 40.0% |
| !! | AGGATAGCGGATATGTTTCT+TGG | + | chr5.3:73427835-73427854 | None:intergenic | 40.0% |
| !! | ATGACGTCTGCTTTTGAACA+CGG | + | chr5.3:73425872-73425891 | None:intergenic | 40.0% |
| !! | ATGTCTAGTCTTGAGTGTGA+GGG | - | chr5.3:73426246-73426265 | MS.gene057070:CDS | 40.0% |
| !!! | CCCTTGTAGTTTTTCAAGCA+TGG | + | chr5.3:73428615-73428634 | None:intergenic | 40.0% |
| ACCATACATGTCGACCATCT+CGG | - | chr5.3:73426668-73426687 | MS.gene057070:intron | 45.0% | |
| AGGTATAGTACATACCCGGT+TGG | - | chr5.3:73427695-73427714 | MS.gene057070:intron | 45.0% | |
| ATCCTGAAAGAGAGGAGCTA+CGG | - | chr5.3:73427167-73427186 | MS.gene057070:intron | 45.0% | |
| ATGTGTGTCAAAAGCCGAGA+TGG | + | chr5.3:73426685-73426704 | None:intergenic | 45.0% | |
| CAATTCCTCATTATCCCGGT+CGG | + | chr5.3:73428495-73428514 | None:intergenic | 45.0% | |
| CATACGTCACGTGAATCTTG+TGG | - | chr5.3:73426452-73426471 | MS.gene057070:intron | 45.0% | |
| CCAAATGACCCACCAAATCT+TGG | + | chr5.3:73426199-73426218 | None:intergenic | 45.0% | |
| CCAGCATAACTGCCATAGAA+CGG | + | chr5.3:73427268-73427287 | None:intergenic | 45.0% | |
| CTTCCTCTAAATGCTTGCGA+GGG | - | chr5.3:73426822-73426841 | MS.gene057070:intron | 45.0% | |
| GAGAGTTGAGTTCTGTTTGG+TGG | + | chr5.3:73428565-73428584 | None:intergenic | 45.0% | |
| GAGCACGAAACTGAATTGGA+AGG | - | chr5.3:73428767-73428786 | MS.gene057070:intron | 45.0% | |
| GGAAACTCCTCACTTTGTCA+AGG | + | chr5.3:73425851-73425870 | None:intergenic | 45.0% | |
| GGAATATGTGTACAATCGCC+AGG | - | chr5.3:73427872-73427891 | MS.gene057070:intron | 45.0% | |
| TCCAATTCAGTTTCGTGCTC+CGG | + | chr5.3:73428767-73428786 | None:intergenic | 45.0% | |
| TCTATGGCAGTTATGCTGGA+AGG | - | chr5.3:73427269-73427288 | MS.gene057070:CDS | 45.0% | |
| TCTCACCTTACAAGCCAGTT+TGG | - | chr5.3:73426321-73426340 | MS.gene057070:CDS | 45.0% | |
| TCTTCCTCTAAATGCTTGCG+AGG | - | chr5.3:73426821-73426840 | MS.gene057070:intron | 45.0% | |
| ! | TTCTGTTTGGTGGATGTCGA+GGG | + | chr5.3:73428555-73428574 | None:intergenic | 45.0% |
| ! | TTGGTGGGTCATTTGGTATC+GGG | - | chr5.3:73426203-73426222 | MS.gene057070:CDS | 45.0% |
| ! | TTTCCCATATCCAAAAGCGC+TGG | + | chr5.3:73426639-73426658 | None:intergenic | 45.0% |
| !! | CACAACCAAACTGGCTTGTA+AGG | + | chr5.3:73426329-73426348 | None:intergenic | 45.0% |
| !! | CCAAGATTTGGTGGGTCATT+TGG | - | chr5.3:73426196-73426215 | MS.gene057070:CDS | 45.0% |
| !!! | ATTTAAATTTTTATGAAATT+TGG | + | chr5.3:73427438-73427457 | None:intergenic | 5.0% |
| AAATGGAGGGTTTGCCCTCA+AGG | + | chr5.3:73428813-73428832 | None:intergenic | 50.0% | |
| CCACTCAATATCGGAGAGGA+TGG | - | chr5.3:73427118-73427137 | MS.gene057070:CDS | 50.0% | |
| CCATCCTCTCCGATATTGAG+TGG | + | chr5.3:73427121-73427140 | None:intergenic | 50.0% | |
| CCCACTGCACCACTCAATAT+CGG | - | chr5.3:73427109-73427128 | MS.gene057070:CDS | 50.0% | |
| CCGATATTGAGTGGTGCAGT+GGG | + | chr5.3:73427112-73427131 | None:intergenic | 50.0% | |
| CCGTTCTATGGCAGTTATGC+TGG | - | chr5.3:73427265-73427284 | MS.gene057070:CDS | 50.0% | |
| CTTGATCAATAGCGAGGCGA+TGG | + | chr5.3:73428718-73428737 | None:intergenic | 50.0% | |
| TACCGTAGCTCCTCTCTTTC+AGG | + | chr5.3:73427172-73427191 | None:intergenic | 50.0% | |
| TCCGATATTGAGTGGTGCAG+TGG | + | chr5.3:73427113-73427132 | None:intergenic | 50.0% | |
| TCCGGAGCACGAAACTGAAT+TGG | - | chr5.3:73428763-73428782 | MS.gene057070:intron | 50.0% | |
| TGCACCACTCAATATCGGAG+AGG | - | chr5.3:73427114-73427133 | MS.gene057070:CDS | 50.0% | |
| ! | CAGCTCAATTCCAGCGCTTT+TGG | - | chr5.3:73426626-73426645 | MS.gene057070:CDS | 50.0% |
| ! | CATTTGGTATCGGGCGACTT+AGG | - | chr5.3:73426212-73426231 | MS.gene057070:CDS | 50.0% |
| ! | GCTGAAGAAGTTGATCAGGG+AGG | + | chr5.3:73428241-73428260 | None:intergenic | 50.0% |
| ! | GTTCTGTTTGGTGGATGTCG+AGG | + | chr5.3:73428556-73428575 | None:intergenic | 50.0% |
| !! | CAAAAGCGCTGGAATTGAGC+TGG | + | chr5.3:73426628-73426647 | None:intergenic | 50.0% |
| !! | TGTTTCTGGAAGTGGAGCGT+GGG | - | chr5.3:73426985-73427004 | MS.gene057070:intron | 50.0% |
| GCACCCTCGCAAGCATTTAG+AGG | + | chr5.3:73426828-73426847 | None:intergenic | 55.0% | |
| GCCGAGATGGTCGACATGTA+TGG | + | chr5.3:73426672-73426691 | None:intergenic | 55.0% | |
| !! | AGCTAAGAAGAGCACCGACC+GGG | - | chr5.3:73428478-73428497 | MS.gene057070:intron | 55.0% |
| !! | CAGCTAAGAAGAGCACCGAC+CGG | - | chr5.3:73428477-73428496 | MS.gene057070:intron | 55.0% |
| !! | CTGTTTCTGGAAGTGGAGCG+TGG | - | chr5.3:73426984-73427003 | MS.gene057070:intron | 55.0% |
| !! | GAGCACCGACCGGGATAATG+AGG | - | chr5.3:73428487-73428506 | MS.gene057070:intron | 60.0% |
| TCTGGAAGTGGAGCGTGGGC+TGG | - | chr5.3:73426989-73427008 | MS.gene057070:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 73425614 | 73428835 | 73425614 | ID=MS.gene057070 |
| chr5.3 | mRNA | 73425614 | 73428835 | 73425614 | ID=MS.gene057070.t1;Parent=MS.gene057070 |
| chr5.3 | exon | 73428803 | 73428835 | 73428803 | ID=MS.gene057070.t1.exon1;Parent=MS.gene057070.t1 |
| chr5.3 | CDS | 73428803 | 73428835 | 73428803 | ID=cds.MS.gene057070.t1;Parent=MS.gene057070.t1 |
| chr5.3 | exon | 73428544 | 73428663 | 73428544 | ID=MS.gene057070.t1.exon2;Parent=MS.gene057070.t1 |
| chr5.3 | CDS | 73428544 | 73428663 | 73428544 | ID=cds.MS.gene057070.t1;Parent=MS.gene057070.t1 |
| chr5.3 | exon | 73427729 | 73427851 | 73427729 | ID=MS.gene057070.t1.exon3;Parent=MS.gene057070.t1 |
| chr5.3 | CDS | 73427729 | 73427851 | 73427729 | ID=cds.MS.gene057070.t1;Parent=MS.gene057070.t1 |
| chr5.3 | exon | 73427439 | 73427507 | 73427439 | ID=MS.gene057070.t1.exon4;Parent=MS.gene057070.t1 |
| chr5.3 | CDS | 73427439 | 73427507 | 73427439 | ID=cds.MS.gene057070.t1;Parent=MS.gene057070.t1 |
| chr5.3 | exon | 73427261 | 73427349 | 73427261 | ID=MS.gene057070.t1.exon5;Parent=MS.gene057070.t1 |
| chr5.3 | CDS | 73427261 | 73427349 | 73427261 | ID=cds.MS.gene057070.t1;Parent=MS.gene057070.t1 |
| chr5.3 | exon | 73427062 | 73427170 | 73427062 | ID=MS.gene057070.t1.exon6;Parent=MS.gene057070.t1 |
| chr5.3 | CDS | 73427062 | 73427170 | 73427062 | ID=cds.MS.gene057070.t1;Parent=MS.gene057070.t1 |
| chr5.3 | exon | 73426753 | 73426821 | 73426753 | ID=MS.gene057070.t1.exon7;Parent=MS.gene057070.t1 |
| chr5.3 | CDS | 73426753 | 73426821 | 73426753 | ID=cds.MS.gene057070.t1;Parent=MS.gene057070.t1 |
| chr5.3 | exon | 73426556 | 73426666 | 73426556 | ID=MS.gene057070.t1.exon8;Parent=MS.gene057070.t1 |
| chr5.3 | CDS | 73426556 | 73426666 | 73426556 | ID=cds.MS.gene057070.t1;Parent=MS.gene057070.t1 |
| chr5.3 | exon | 73425614 | 73426447 | 73425614 | ID=MS.gene057070.t1.exon9;Parent=MS.gene057070.t1 |
| chr5.3 | CDS | 73425614 | 73426447 | 73425614 | ID=cds.MS.gene057070.t1;Parent=MS.gene057070.t1 |
| Gene Sequence |
| Protein sequence |
