Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017101.t1 | RHN57688.1 | 95.8 | 165 | 7 | 0 | 95 | 259 | 409 | 573 | 3.60E-75 | 291.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017101.t1 | Q84WU2 | 53.7 | 82 | 38 | 0 | 13 | 94 | 30 | 111 | 1.7e-17 | 91.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017101.t1 | G7KD59 | 95.8 | 165 | 7 | 0 | 95 | 259 | 628 | 792 | 2.6e-75 | 291.6 |
MS.gene017101.t1 | G7KD59 | 56.2 | 96 | 32 | 3 | 1 | 93 | 1 | 89 | 2.3e-15 | 92.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017101.t1 | MTR_5g091450 | 95.758 | 165 | 7 | 0 | 95 | 259 | 628 | 792 | 1.15e-100 | 310 |
MS.gene017101.t1 | MTR_5g091450 | 56.250 | 96 | 32 | 3 | 1 | 93 | 1 | 89 | 1.78e-24 | 102 |
MS.gene017101.t1 | MTR_5g091430 | 72.121 | 165 | 46 | 0 | 95 | 259 | 386 | 550 | 1.32e-73 | 234 |
MS.gene017101.t1 | MTR_5g091410 | 68.750 | 176 | 54 | 1 | 84 | 259 | 375 | 549 | 2.18e-69 | 223 |
MS.gene017101.t1 | MTR_5g091180 | 73.913 | 138 | 29 | 1 | 95 | 232 | 572 | 702 | 6.14e-54 | 185 |
MS.gene017101.t1 | MTR_5g091180 | 50.515 | 97 | 37 | 4 | 7 | 93 | 7 | 102 | 2.14e-19 | 87.8 |
MS.gene017101.t1 | MTR_5g086700 | 66.234 | 77 | 22 | 1 | 22 | 94 | 41 | 117 | 1.84e-26 | 108 |
MS.gene017101.t1 | MTR_5g086700 | 66.234 | 77 | 22 | 1 | 22 | 94 | 41 | 117 | 1.86e-26 | 108 |
MS.gene017101.t1 | MTR_3g079840 | 64.557 | 79 | 22 | 1 | 22 | 94 | 34 | 112 | 3.45e-26 | 107 |
MS.gene017101.t1 | MTR_3g079840 | 64.557 | 79 | 22 | 1 | 22 | 94 | 35 | 113 | 3.45e-26 | 107 |
MS.gene017101.t1 | MTR_1g041240 | 56.757 | 74 | 25 | 2 | 27 | 94 | 41 | 113 | 7.67e-20 | 89.0 |
MS.gene017101.t1 | MTR_1g041240 | 56.757 | 74 | 25 | 2 | 27 | 94 | 42 | 114 | 7.67e-20 | 89.0 |
MS.gene017101.t1 | MTR_1g041240 | 56.757 | 74 | 25 | 2 | 27 | 94 | 40 | 112 | 7.74e-20 | 89.0 |
MS.gene017101.t1 | MTR_5g091550 | 60.000 | 55 | 22 | 0 | 39 | 93 | 20 | 74 | 7.96e-16 | 77.0 |
MS.gene017101.t1 | MTR_5g091550 | 60.000 | 55 | 22 | 0 | 39 | 93 | 20 | 74 | 8.26e-16 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017101.t1 | AT5G06600 | 53.659 | 82 | 38 | 0 | 13 | 94 | 31 | 112 | 4.24e-23 | 98.6 |
MS.gene017101.t1 | AT5G06600 | 53.659 | 82 | 38 | 0 | 13 | 94 | 30 | 111 | 4.33e-23 | 98.6 |
MS.gene017101.t1 | AT5G06600 | 53.659 | 82 | 38 | 0 | 13 | 94 | 31 | 112 | 4.33e-23 | 98.6 |
MS.gene017101.t1 | AT3G11910 | 53.659 | 82 | 38 | 0 | 13 | 94 | 29 | 110 | 8.17e-23 | 97.8 |
MS.gene017101.t1 | AT3G11910 | 53.659 | 82 | 38 | 0 | 13 | 94 | 29 | 110 | 8.17e-23 | 97.8 |
MS.gene017101.t1 | AT3G11910 | 53.659 | 82 | 38 | 0 | 13 | 94 | 30 | 111 | 8.17e-23 | 97.8 |
MS.gene017101.t1 | AT3G11910 | 53.659 | 82 | 38 | 0 | 13 | 94 | 30 | 111 | 8.17e-23 | 97.8 |
MS.gene017101.t1 | AT3G58410 | 47.761 | 67 | 30 | 1 | 38 | 99 | 29 | 95 | 3.12e-14 | 71.6 |
MS.gene017101.t1 | AT3G58410 | 47.761 | 67 | 30 | 1 | 38 | 99 | 8 | 74 | 3.85e-14 | 71.2 |
MS.gene017101.t1 | AT3G58360 | 52.632 | 57 | 27 | 0 | 36 | 92 | 6 | 62 | 3.78e-13 | 68.2 |
Find 44 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGACTATTTGTCAATGTATT+TGG | 0.111627 | 5.1:-72854640 | MS.gene017101:CDS |
ATCTTCAATCTCATCAATTT+TGG | 0.131114 | 5.1:+72854211 | None:intergenic |
TCCACAGTGTTGACAGTTTC+AGG | 0.199373 | 5.1:+72854909 | None:intergenic |
ATCTTGGTCAGTGCTCTTCT+TGG | 0.258512 | 5.1:+72854373 | None:intergenic |
TTAAAGTTGGGGATTATAAT+TGG | 0.278606 | 5.1:-72854809 | MS.gene017101:intron |
TCCAATTCAGTTTGCGCCTC+CGG | 0.296644 | 5.1:+72854086 | None:intergenic |
CCTTCAATGCTTCATTATCT+TGG | 0.301042 | 5.1:+72854357 | None:intergenic |
AGCAAATACACAAATCAAAA+TGG | 0.312364 | 5.1:+72854023 | None:intergenic |
TAGTCGAAATTGTTCCCTTT+GGG | 0.346050 | 5.1:+72854657 | None:intergenic |
ATTCGGATGTATTTAAAGTT+GGG | 0.353949 | 5.1:-72854821 | MS.gene017101:CDS |
AGAAGGTCTACAGAATCTTC+AGG | 0.363813 | 5.1:-72854055 | MS.gene017101:CDS |
CCCGGAGGCGCAAACTGAAT+TGG | 0.373000 | 5.1:-72854087 | MS.gene017101:CDS |
TATTCGGATGTATTTAAAGT+TGG | 0.377166 | 5.1:-72854822 | MS.gene017101:CDS |
ATAGTCGAAATTGTTCCCTT+TGG | 0.382240 | 5.1:+72854656 | None:intergenic |
CCAAGATAATGAAGCATTGA+AGG | 0.382695 | 5.1:-72854357 | MS.gene017101:CDS |
CAAGAGAGTTGCGTTGTGTT+TGG | 0.385406 | 5.1:+72854288 | None:intergenic |
CCAATTCAGTTTGCGCCTCC+GGG | 0.402649 | 5.1:+72854087 | None:intergenic |
GTCAGTGCTCTTCTTGGCCG+AGG | 0.467488 | 5.1:+72854379 | None:intergenic |
GTTTGAAAGGGAAGTCTTTG+AGG | 0.469142 | 5.1:+72854313 | None:intergenic |
AAAAGAAAGACAACGAATAC+AGG | 0.472256 | 5.1:-72855673 | MS.gene017101:intron |
TGTCAACACTGTGGATAGTC+AGG | 0.475646 | 5.1:-72854901 | MS.gene017101:CDS |
GTCAGGCTGTGCGATTCAAA+TGG | 0.498660 | 5.1:-72854884 | MS.gene017101:CDS |
GAGAGTTGCGTTGTGTTTGG+TGG | 0.502859 | 5.1:+72854291 | None:intergenic |
TTCGGATGTATTTAAAGTTG+GGG | 0.522407 | 5.1:-72854820 | MS.gene017101:CDS |
GTTGTGTTTGGTGGTTTGAA+AGG | 0.530625 | 5.1:+72854300 | None:intergenic |
GAAGGTCTACAGAATCTTCA+GGG | 0.550028 | 5.1:-72854054 | MS.gene017101:CDS |
TTGTGTTTGGTGGTTTGAAA+GGG | 0.553527 | 5.1:+72854301 | None:intergenic |
GATTCAGCTACTTTGCCCTA+CGG | 0.577109 | 5.1:-72854609 | MS.gene017101:intron |
TTTGATCATTAGCGAGACGA+TGG | 0.588794 | 5.1:+72854138 | None:intergenic |
TGAATTGGAAAGTCATGAGA+AGG | 0.590278 | 5.1:-72854072 | MS.gene017101:CDS |
AAGGAGGTGGTGAAAATGAA+AGG | 0.597643 | 5.1:-72855711 | MS.gene017101:CDS |
AAATACACAAATCAAAATGG+AGG | 0.601137 | 5.1:+72854026 | None:intergenic |
AATACACAAATCAAAATGGA+GGG | 0.608058 | 5.1:+72854027 | None:intergenic |
AAGTGTTGAAGAGAAAATCC+CGG | 0.614365 | 5.1:-72854105 | MS.gene017101:CDS |
CCTTCACAATAGTGTTGAGA+AGG | 0.614803 | 5.1:+72854438 | None:intergenic |
TCTCTCACAGGCTAGATGGA+AGG | 0.618588 | 5.1:-72855730 | None:intergenic |
ACAGGCTAGATGGAAGGAGG+TGG | 0.630158 | 5.1:-72855724 | None:intergenic |
CCTTCTCAACACTATTGTGA+AGG | 0.632483 | 5.1:-72854438 | MS.gene017101:CDS |
TCTCGTCAATTAGAACAAGT+TGG | 0.633272 | 5.1:-72854473 | MS.gene017101:CDS |
CTCACAGGCTAGATGGAAGG+AGG | 0.638965 | 5.1:-72855727 | None:intergenic |
AACTTGTTCTAATTGACGAG+AGG | 0.641144 | 5.1:+72854475 | None:intergenic |
TTGACGAGAGGTGAACGCGT+CGG | 0.655338 | 5.1:+72854487 | None:intergenic |
ACCTGAAACTGTCAACACTG+TGG | 0.702025 | 5.1:-72854910 | MS.gene017101:CDS |
TGTTGAAGAGAAAATCCCGG+AGG | 0.793807 | 5.1:-72854102 | MS.gene017101:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGTTCATTGTATTCATTTA+TGG | + | chr5.1:72854203-72854222 | None:intergenic | 20.0% |
!! | CAATATGAAAAATCTCTATT+CGG | - | chr5.1:72854914-72854933 | MS.gene017101:CDS | 20.0% |
!! | CTATGTAATATGTAAATCAA+AGG | - | chr5.1:72854168-72854187 | MS.gene017101:CDS | 20.0% |
!!! | AGTTTCTCTTATAGTTTTTT+AGG | + | chr5.1:72854413-72854432 | None:intergenic | 20.0% |
!!! | CTTTGATTTACATATTACAT+AGG | + | chr5.1:72854170-72854189 | None:intergenic | 20.0% |
! | ACTAATATAACAACTACAAC+AGG | + | chr5.1:72855000-72855019 | None:intergenic | 25.0% |
! | GATTTCAAATACAACTGTAT+AGG | - | chr5.1:72854583-72854602 | MS.gene017101:intron | 25.0% |
! | TTAAAGTTGGGGATTATAAT+TGG | - | chr5.1:72854943-72854962 | MS.gene017101:intron | 25.0% |
!! | ATCTTCAATCTCATCAATTT+TGG | + | chr5.1:72855544-72855563 | None:intergenic | 25.0% |
!! | ATTCGGATGTATTTAAAGTT+GGG | - | chr5.1:72854931-72854950 | MS.gene017101:intron | 25.0% |
!! | TATTCGGATGTATTTAAAGT+TGG | - | chr5.1:72854930-72854949 | MS.gene017101:intron | 25.0% |
AAAAGAAAGACAACGAATAC+AGG | - | chr5.1:72854079-72854098 | MS.gene017101:CDS | 30.0% | |
AAACCTTATCCAAGTAAGTA+GGG | + | chr5.1:72854528-72854547 | None:intergenic | 30.0% | |
AACATAGATGAATTAAGCGT+AGG | - | chr5.1:72854218-72854237 | MS.gene017101:CDS | 30.0% | |
ACATATTACATAGGCTAAGT+AGG | + | chr5.1:72854161-72854180 | None:intergenic | 30.0% | |
ACTGCATTGAAGTTAACTTT+AGG | + | chr5.1:72855222-72855241 | None:intergenic | 30.0% | |
AGCACTTATAGTAGAAAAGA+TGG | - | chr5.1:72854276-72854295 | MS.gene017101:CDS | 30.0% | |
ATATATTCTCCTAAACTGCA+TGG | - | chr5.1:72854682-72854701 | MS.gene017101:intron | 30.0% | |
ATCCTTACTATAGAATCTAC+CGG | + | chr5.1:72854343-72854362 | None:intergenic | 30.0% | |
CGACTATTTGTCAATGTATT+TGG | - | chr5.1:72855112-72855131 | MS.gene017101:intron | 30.0% | |
TAGAAAAGATGGTGCAAATT+AGG | - | chr5.1:72854287-72854306 | MS.gene017101:CDS | 30.0% | |
! | ACAACTGTATAGGTTTCTTT+TGG | - | chr5.1:72854593-72854612 | MS.gene017101:intron | 30.0% |
! | GGACAATTGAAAGATTTTCT+CGG | - | chr5.1:72854889-72854908 | MS.gene017101:CDS | 30.0% |
! | TTCGGATGTATTTAAAGTTG+GGG | - | chr5.1:72854932-72854951 | MS.gene017101:intron | 30.0% |
! | TTCGTTGTCTTTCTTTTCTT+AGG | + | chr5.1:72854076-72854095 | None:intergenic | 30.0% |
!!! | GTGTACTTATTTTACCCAAA+GGG | - | chr5.1:72855081-72855100 | MS.gene017101:intron | 30.0% |
AATGCTTATCCATGCAGTTT+AGG | + | chr5.1:72854694-72854713 | None:intergenic | 35.0% | |
AATTAGCTGAAAACTTGGAG+AGG | + | chr5.1:72854769-72854788 | None:intergenic | 35.0% | |
ACAATCTTAGAAAGAGAGCT+GGG | - | chr5.1:72854251-72854270 | MS.gene017101:CDS | 35.0% | |
AGTAAGGATAGTAGTTCAGA+TGG | - | chr5.1:72854354-72854373 | MS.gene017101:CDS | 35.0% | |
AGTTAACTTCAATGCAGTCA+AGG | - | chr5.1:72855224-72855243 | MS.gene017101:intron | 35.0% | |
ATAGTCGAAATTGTTCCCTT+TGG | + | chr5.1:72855099-72855118 | None:intergenic | 35.0% | |
CAAACCTTATCCAAGTAAGT+AGG | + | chr5.1:72854529-72854548 | None:intergenic | 35.0% | |
CAGTGAATTAGCTGAAAACT+TGG | + | chr5.1:72854774-72854793 | None:intergenic | 35.0% | |
CAGTGAGAGATACTTCAATT+AGG | - | chr5.1:72854644-72854663 | MS.gene017101:CDS | 35.0% | |
CCTTCAATGCTTCATTATCT+TGG | + | chr5.1:72855398-72855417 | None:intergenic | 35.0% | |
CTACTTACTTGGATAAGGTT+TGG | - | chr5.1:72854527-72854546 | MS.gene017101:intron | 35.0% | |
GCATTGGAGTAGTTTAAAGA+AGG | - | chr5.1:72855189-72855208 | MS.gene017101:intron | 35.0% | |
TAGTCGAAATTGTTCCCTTT+GGG | + | chr5.1:72855098-72855117 | None:intergenic | 35.0% | |
TCTCGTCAATTAGAACAAGT+TGG | - | chr5.1:72855279-72855298 | MS.gene017101:intron | 35.0% | |
TGAATTGGAAAGTCATGAGA+AGG | - | chr5.1:72855680-72855699 | MS.gene017101:CDS | 35.0% | |
! | AACTTGTTCTAATTGACGAG+AGG | + | chr5.1:72855280-72855299 | None:intergenic | 35.0% |
! | TTGTGTTTGGTGGTTTGAAA+GGG | + | chr5.1:72855454-72855473 | None:intergenic | 35.0% |
! | TTTCTTTTGGTATCCAAGTC+AGG | - | chr5.1:72854606-72854625 | MS.gene017101:intron | 35.0% |
!! | AAGTGTTGAAGAGAAAATCC+CGG | - | chr5.1:72855647-72855666 | MS.gene017101:intron | 35.0% |
!! | ACATTCTCTGAAACAGTTCA+TGG | - | chr5.1:72854967-72854986 | MS.gene017101:intron | 35.0% |
!! | CCAAGATAATGAAGCATTGA+AGG | - | chr5.1:72855395-72855414 | MS.gene017101:intron | 35.0% |
!!! | ACCTTGTAGTTTTTCAAGCT+TGG | + | chr5.1:72855514-72855533 | None:intergenic | 35.0% |
!!! | CGTGTACTTATTTTACCCAA+AGG | - | chr5.1:72855080-72855099 | MS.gene017101:intron | 35.0% |
!!! | TTTTTTTTCTTCACCTGAGC+AGG | - | chr5.1:72855057-72855076 | MS.gene017101:intron | 35.0% |
AAGGAGGTGGTGAAAATGAA+AGG | - | chr5.1:72854041-72854060 | MS.gene017101:CDS | 40.0% | |
AAGGATAGTAGTTCAGATGG+AGG | - | chr5.1:72854357-72854376 | MS.gene017101:CDS | 40.0% | |
ACAAGTTCATGAACCTGACT+TGG | + | chr5.1:72854622-72854641 | None:intergenic | 40.0% | |
AGAAGGTCTACAGAATCTTC+AGG | - | chr5.1:72855697-72855716 | MS.gene017101:CDS | 40.0% | |
AGACATGCACAGTTTAGCAT+TGG | - | chr5.1:72855173-72855192 | MS.gene017101:intron | 40.0% | |
AGATGGTGCAAATTAGGCTT+AGG | - | chr5.1:72854293-72854312 | MS.gene017101:CDS | 40.0% | |
CAATCTTAGAAAGAGAGCTG+GGG | - | chr5.1:72854252-72854271 | MS.gene017101:CDS | 40.0% | |
CCTTCTCAACACTATTGTGA+AGG | - | chr5.1:72855314-72855333 | MS.gene017101:intron | 40.0% | |
GAAGGTCTACAGAATCTTCA+GGG | - | chr5.1:72855698-72855717 | MS.gene017101:CDS | 40.0% | |
GACAATCTTAGAAAGAGAGC+TGG | - | chr5.1:72854250-72854269 | MS.gene017101:CDS | 40.0% | |
GACCGGTAGATTCTATAGTA+AGG | - | chr5.1:72854338-72854357 | MS.gene017101:CDS | 40.0% | |
GAGGATAGTCAGAACACTAA+AGG | - | chr5.1:72854376-72854395 | MS.gene017101:CDS | 40.0% | |
GCCAAGCTTGAAAAACTACA+AGG | - | chr5.1:72855510-72855529 | MS.gene017101:intron | 40.0% | |
GTCAGAACACTAAAGGTAGA+AGG | - | chr5.1:72854383-72854402 | MS.gene017101:CDS | 40.0% | |
GTTTGAAAGGGAAGTCTTTG+AGG | + | chr5.1:72855442-72855461 | None:intergenic | 40.0% | |
TCTGTATGTAGAGAGAAGAC+CGG | - | chr5.1:72854321-72854340 | MS.gene017101:CDS | 40.0% | |
TTTGAAAAAAGAGCGAGCCT+CGG | - | chr5.1:72855356-72855375 | MS.gene017101:intron | 40.0% | |
TTTGATCATTAGCGAGACGA+TGG | + | chr5.1:72855617-72855636 | None:intergenic | 40.0% | |
! | CCTTCACAATAGTGTTGAGA+AGG | + | chr5.1:72855317-72855336 | None:intergenic | 40.0% |
! | GTGTCACTGTTCTTTGATAC+TGG | - | chr5.1:72854126-72854145 | MS.gene017101:CDS | 40.0% |
! | GTTGTGTTTGGTGGTTTGAA+AGG | + | chr5.1:72855455-72855474 | None:intergenic | 40.0% |
!! | TTCTCTGAAACAGTTCATGG+TGG | - | chr5.1:72854970-72854989 | MS.gene017101:intron | 40.0% |
AAATAAGTACACGCCTGCTC+AGG | + | chr5.1:72855073-72855092 | None:intergenic | 45.0% | |
ACCTGAAACTGTCAACACTG+TGG | - | chr5.1:72854842-72854861 | MS.gene017101:CDS | 45.0% | |
AGTAAGTAGGGTCGCTTACA+TGG | + | chr5.1:72854516-72854535 | None:intergenic | 45.0% | |
ATCTTGGTCAGTGCTCTTCT+TGG | + | chr5.1:72855382-72855401 | None:intergenic | 45.0% | |
CAAGAGAGTTGCGTTGTGTT+TGG | + | chr5.1:72855467-72855486 | None:intergenic | 45.0% | |
CGACCCTACTTACTTGGATA+AGG | - | chr5.1:72854522-72854541 | MS.gene017101:intron | 45.0% | |
TGGTGCAAATTAGGCTTAGG+TGG | - | chr5.1:72854296-72854315 | MS.gene017101:CDS | 45.0% | |
TGTAAGCGACCCTACTTACT+TGG | - | chr5.1:72854516-72854535 | MS.gene017101:intron | 45.0% | |
TGTCAACACTGTGGATAGTC+AGG | - | chr5.1:72854851-72854870 | MS.gene017101:CDS | 45.0% | |
TGTTGAAGAGAAAATCCCGG+AGG | - | chr5.1:72855650-72855669 | MS.gene017101:intron | 45.0% | |
! | GATTCAGCTACTTTGCCCTA+CGG | - | chr5.1:72855143-72855162 | MS.gene017101:intron | 45.0% |
!! | TCCACAGTGTTGACAGTTTC+AGG | + | chr5.1:72854846-72854865 | None:intergenic | 45.0% |
GAGAGTTGCGTTGTGTTTGG+TGG | + | chr5.1:72855464-72855483 | None:intergenic | 50.0% | |
GTCAGGCTGTGCGATTCAAA+TGG | - | chr5.1:72854868-72854887 | MS.gene017101:CDS | 50.0% | |
TCCAATTCAGTTTGCGCCTC+CGG | + | chr5.1:72855669-72855688 | None:intergenic | 50.0% | |
CCAATTCAGTTTGCGCCTCC+GGG | + | chr5.1:72855668-72855687 | None:intergenic | 55.0% | |
GCATGTCTGCTCCAACCGTA+GGG | + | chr5.1:72855161-72855180 | None:intergenic | 55.0% | |
TGCATGTCTGCTCCAACCGT+AGG | + | chr5.1:72855162-72855181 | None:intergenic | 55.0% | |
TTGACGAGAGGTGAACGCGT+CGG | + | chr5.1:72855268-72855287 | None:intergenic | 55.0% | |
! | CAGCTACTTTGCCCTACGGT+TGG | - | chr5.1:72855147-72855166 | MS.gene017101:intron | 55.0% |
GTCAGTGCTCTTCTTGGCCG+AGG | + | chr5.1:72855376-72855395 | None:intergenic | 60.0% | |
! | CCCGGAGGCGCAAACTGAAT+TGG | - | chr5.1:72855665-72855684 | MS.gene017101:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 72854037 | 72855737 | 72854037 | ID=MS.gene017101 |
chr5.1 | mRNA | 72854037 | 72855737 | 72854037 | ID=MS.gene017101.t1;Parent=MS.gene017101 |
chr5.1 | exon | 72855674 | 72855737 | 72855674 | ID=MS.gene017101.t1.exon1;Parent=MS.gene017101.t1 |
chr5.1 | CDS | 72855674 | 72855737 | 72855674 | ID=cds.MS.gene017101.t1;Parent=MS.gene017101.t1 |
chr5.1 | exon | 72854810 | 72854942 | 72854810 | ID=MS.gene017101.t1.exon2;Parent=MS.gene017101.t1 |
chr5.1 | CDS | 72854810 | 72854942 | 72854810 | ID=cds.MS.gene017101.t1;Parent=MS.gene017101.t1 |
chr5.1 | exon | 72854610 | 72854695 | 72854610 | ID=MS.gene017101.t1.exon3;Parent=MS.gene017101.t1 |
chr5.1 | CDS | 72854610 | 72854695 | 72854610 | ID=cds.MS.gene017101.t1;Parent=MS.gene017101.t1 |
chr5.1 | exon | 72854037 | 72854533 | 72854037 | ID=MS.gene017101.t1.exon4;Parent=MS.gene017101.t1 |
chr5.1 | CDS | 72854037 | 72854533 | 72854037 | ID=cds.MS.gene017101.t1;Parent=MS.gene017101.t1 |
Gene Sequence |
Protein sequence |