Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057066.t1 | GAU12358.1 | 83.2 | 214 | 29 | 1 | 124 | 330 | 312 | 525 | 4.70E-43 | 185.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057066.t1 | Q9FPT1 | 67.4 | 95 | 30 | 1 | 22 | 115 | 92 | 186 | 1.4e-32 | 141.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057066.t1 | A0A2K3MSM8 | 75.1 | 241 | 48 | 2 | 97 | 330 | 262 | 497 | 8.3e-42 | 180.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057066.t1 | MTR_5g091450 | 71.064 | 235 | 59 | 2 | 105 | 330 | 558 | 792 | 7.68e-102 | 317 |
| MS.gene057066.t1 | MTR_5g091450 | 60.577 | 104 | 37 | 3 | 22 | 123 | 69 | 170 | 7.61e-34 | 132 |
| MS.gene057066.t1 | MTR_5g091430 | 71.362 | 213 | 54 | 1 | 125 | 330 | 338 | 550 | 4.78e-97 | 298 |
| MS.gene057066.t1 | MTR_5g091410 | 69.792 | 192 | 57 | 1 | 139 | 330 | 359 | 549 | 1.32e-77 | 247 |
| MS.gene057066.t1 | MTR_5g091180 | 72.727 | 187 | 37 | 2 | 124 | 303 | 523 | 702 | 6.43e-76 | 247 |
| MS.gene057066.t1 | MTR_5g091180 | 54.286 | 105 | 44 | 3 | 22 | 124 | 82 | 184 | 2.28e-29 | 119 |
| MS.gene057066.t1 | MTR_5g086700 | 69.474 | 95 | 28 | 1 | 22 | 115 | 97 | 191 | 1.59e-40 | 151 |
| MS.gene057066.t1 | MTR_5g086700 | 69.474 | 95 | 28 | 1 | 22 | 115 | 97 | 191 | 1.62e-40 | 151 |
| MS.gene057066.t1 | MTR_3g079840 | 68.421 | 95 | 29 | 1 | 22 | 115 | 92 | 186 | 5.81e-40 | 150 |
| MS.gene057066.t1 | MTR_3g079840 | 68.421 | 95 | 29 | 1 | 22 | 115 | 93 | 187 | 5.81e-40 | 150 |
| MS.gene057066.t1 | MTR_1g041240 | 58.947 | 95 | 38 | 1 | 22 | 115 | 92 | 186 | 2.42e-34 | 133 |
| MS.gene057066.t1 | MTR_1g041240 | 58.947 | 95 | 38 | 1 | 22 | 115 | 93 | 187 | 2.42e-34 | 133 |
| MS.gene057066.t1 | MTR_1g041240 | 58.947 | 95 | 38 | 1 | 22 | 115 | 94 | 188 | 2.47e-34 | 133 |
| MS.gene057066.t1 | MTR_5g091550 | 45.794 | 107 | 55 | 2 | 22 | 127 | 55 | 159 | 2.16e-24 | 103 |
| MS.gene057066.t1 | MTR_5g091550 | 47.115 | 104 | 52 | 2 | 22 | 124 | 55 | 156 | 5.73e-24 | 102 |
| MS.gene057066.t1 | MTR_5g091530 | 51.546 | 97 | 44 | 2 | 28 | 123 | 4 | 98 | 3.94e-22 | 96.3 |
| MS.gene057066.t1 | MTR_1g042160 | 33.945 | 109 | 71 | 1 | 20 | 127 | 49 | 157 | 2.31e-18 | 84.3 |
| MS.gene057066.t1 | MTR_7g107200 | 37.615 | 109 | 65 | 2 | 22 | 127 | 52 | 160 | 6.90e-16 | 78.2 |
| MS.gene057066.t1 | MTR_7g107160 | 37.234 | 94 | 57 | 1 | 22 | 113 | 175 | 268 | 2.14e-14 | 73.9 |
| MS.gene057066.t1 | MTR_7g107160 | 33.824 | 136 | 76 | 4 | 43 | 164 | 4 | 139 | 3.01e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057066.t1 | AT5G06600 | 67.368 | 95 | 30 | 1 | 22 | 115 | 91 | 185 | 1.87e-39 | 148 |
| MS.gene057066.t1 | AT5G06600 | 67.368 | 95 | 30 | 1 | 22 | 115 | 92 | 186 | 1.87e-39 | 148 |
| MS.gene057066.t1 | AT5G06600 | 67.368 | 95 | 30 | 1 | 22 | 115 | 92 | 186 | 2.13e-39 | 148 |
| MS.gene057066.t1 | AT3G11910 | 64.211 | 95 | 33 | 1 | 22 | 115 | 90 | 184 | 9.44e-39 | 146 |
| MS.gene057066.t1 | AT3G11910 | 64.211 | 95 | 33 | 1 | 22 | 115 | 90 | 184 | 9.44e-39 | 146 |
| MS.gene057066.t1 | AT3G11910 | 64.211 | 95 | 33 | 1 | 22 | 115 | 91 | 185 | 9.44e-39 | 146 |
| MS.gene057066.t1 | AT3G11910 | 64.211 | 95 | 33 | 1 | 22 | 115 | 91 | 185 | 9.44e-39 | 146 |
| MS.gene057066.t1 | AT3G58250 | 32.271 | 251 | 149 | 10 | 28 | 264 | 54 | 297 | 6.36e-20 | 89.0 |
| MS.gene057066.t1 | AT3G58270 | 32.632 | 190 | 110 | 4 | 22 | 199 | 44 | 227 | 1.79e-18 | 85.5 |
| MS.gene057066.t1 | AT3G58270 | 32.632 | 190 | 110 | 4 | 22 | 199 | 44 | 227 | 1.79e-18 | 85.5 |
| MS.gene057066.t1 | AT3G58270 | 32.632 | 190 | 110 | 4 | 22 | 199 | 44 | 227 | 1.79e-18 | 85.5 |
| MS.gene057066.t1 | AT3G58260 | 39.048 | 105 | 62 | 2 | 19 | 121 | 44 | 148 | 6.26e-16 | 77.8 |
| MS.gene057066.t1 | AT3G58340 | 29.091 | 165 | 110 | 2 | 22 | 185 | 44 | 202 | 8.33e-16 | 77.4 |
| MS.gene057066.t1 | AT3G58350 | 30.833 | 120 | 74 | 2 | 3 | 119 | 32 | 145 | 7.67e-15 | 74.3 |
| MS.gene057066.t1 | AT3G58350 | 30.833 | 120 | 74 | 2 | 3 | 119 | 32 | 145 | 7.67e-15 | 74.3 |
| MS.gene057066.t1 | AT3G58370 | 36.885 | 122 | 68 | 2 | 3 | 121 | 33 | 148 | 1.01e-14 | 73.9 |
| MS.gene057066.t1 | AT3G58340 | 28.485 | 165 | 101 | 3 | 22 | 185 | 44 | 192 | 1.77e-14 | 73.6 |
| MS.gene057066.t1 | AT3G58210 | 32.576 | 132 | 78 | 3 | 21 | 151 | 48 | 169 | 8.60e-14 | 71.6 |
| MS.gene057066.t1 | AT3G58410 | 28.824 | 170 | 99 | 5 | 22 | 188 | 44 | 194 | 1.26e-13 | 70.9 |
| MS.gene057066.t1 | AT3G58400 | 29.907 | 107 | 72 | 2 | 25 | 128 | 43 | 149 | 3.41e-12 | 66.6 |
| MS.gene057066.t1 | AT2G05420 | 33.962 | 106 | 68 | 2 | 17 | 121 | 48 | 152 | 4.33e-12 | 66.2 |
| MS.gene057066.t1 | AT3G58360 | 30.894 | 123 | 71 | 3 | 3 | 121 | 32 | 144 | 3.54e-11 | 63.5 |
Find 56 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACCAAGTCCTCTTTAA+AGG | 0.173031 | 5.3:+73457489 | None:intergenic |
| CCTTCAATGCTTCATTATTT+TGG | 0.184786 | 5.3:+73457269 | None:intergenic |
| AAGACACGGCTGAGAATTTA+AGG | 0.200013 | 5.3:-73458183 | MS.gene057066:CDS |
| CAACACCGACTTGTTCTAAT+TGG | 0.246269 | 5.3:+73457380 | None:intergenic |
| GAACTGTTTGTCCCTGTATT+TGG | 0.285951 | 5.3:-73458624 | MS.gene057066:CDS |
| ACTGCGTTGAAGTTATCTTT+TGG | 0.321932 | 5.3:+73457445 | None:intergenic |
| AGCCTCTGAGCAACTTCTTC+AGG | 0.329880 | 5.3:-73457527 | MS.gene057066:CDS |
| GAGAGTTAAGTTGTGTTTGT+TGG | 0.343736 | 5.3:+73457203 | None:intergenic |
| CTCCGGAATTTGACCTTCAA+TGG | 0.346689 | 5.3:+73457015 | None:intergenic |
| AGCAAAGACATAAATCAAAA+TGG | 0.350329 | 5.3:+73456935 | None:intergenic |
| CACTTTCTCGTGCGTTGAAC+TGG | 0.358575 | 5.3:+73458326 | None:intergenic |
| CCAAAATAATGAAGCATTGA+AGG | 0.364943 | 5.3:-73457269 | MS.gene057066:CDS |
| AACCATTGAAGGTCAAATTC+CGG | 0.412168 | 5.3:-73457017 | MS.gene057066:CDS |
| TCTAATTCAGTTTGAGCCTC+CGG | 0.423520 | 5.3:+73456998 | None:intergenic |
| TCAACGCACGAGAAAGTGAT+TGG | 0.438493 | 5.3:-73458321 | MS.gene057066:CDS |
| CATCTGCAACATCCAAATAC+AGG | 0.446954 | 5.3:+73458612 | None:intergenic |
| GATTTGTCTGATCCTGCAAA+AGG | 0.447494 | 5.3:-73458271 | MS.gene057066:CDS |
| GTCAAATTGAAAACCATTGA+AGG | 0.458212 | 5.3:-73457028 | MS.gene057066:CDS |
| CAACGCACGAGAAAGTGATT+GGG | 0.470873 | 5.3:-73458320 | MS.gene057066:CDS |
| AATAATTACACTGTGAGAAA+AGG | 0.470901 | 5.3:-73458524 | MS.gene057066:intron |
| AAAAGAAAGACAACGAATAC+AGG | 0.472256 | 5.3:-73459647 | MS.gene057066:intron |
| GAAGCTCTATCGAATCTTCA+AGG | 0.476401 | 5.3:-73456966 | MS.gene057066:CDS |
| GCAACTTCTTCAGGAGTTGA+GGG | 0.478662 | 5.3:-73457518 | MS.gene057066:CDS |
| TATCGCCTTTAAAGAGGACT+TGG | 0.484552 | 5.3:-73457494 | MS.gene057066:CDS |
| GATGCAGTTACTTTGCCATA+TGG | 0.487013 | 5.3:-73458593 | MS.gene057066:CDS |
| CAGTTACTTTGCCATATGGT+TGG | 0.487154 | 5.3:-73458589 | MS.gene057066:CDS |
| AAATCTCAGCATTCTGTACA+TGG | 0.487777 | 5.3:-73457556 | MS.gene057066:intron |
| AGCAACTTCTTCAGGAGTTG+AGG | 0.496043 | 5.3:-73457519 | MS.gene057066:CDS |
| GCATGTCTGCTCCAACCATA+TGG | 0.518309 | 5.3:+73458578 | None:intergenic |
| GAGGGATATCGCCTTTAAAG+AGG | 0.522308 | 5.3:-73457500 | MS.gene057066:CDS |
| AGACATGCACAGTTTAGCAT+TGG | 0.526471 | 5.3:-73458563 | MS.gene057066:CDS |
| CAAATCATGAAGAGGCATGA+AGG | 0.529644 | 5.3:+73458288 | None:intergenic |
| GTCTGTGAAAGAAGTCTTTG+TGG | 0.529807 | 5.3:+73457225 | None:intergenic |
| CTTGATCATCAACGAGGCGA+TGG | 0.532154 | 5.3:+73457050 | None:intergenic |
| TCCTCACAATGTTGTTGAGA+AGG | 0.539367 | 5.3:+73457350 | None:intergenic |
| AAGACATAAATCAAAATGGA+GGG | 0.558434 | 5.3:+73456939 | None:intergenic |
| AGACACGGCTGAGAATTTAA+GGG | 0.559517 | 5.3:-73458182 | MS.gene057066:intron |
| AGATTGCTGATCTTAAAGCC+AGG | 0.563783 | 5.3:-73457171 | MS.gene057066:CDS |
| ACCTTCTCAACAACATTGTG+AGG | 0.565464 | 5.3:-73457351 | MS.gene057066:CDS |
| ATTTGTCTGATCCTGCAAAA+GGG | 0.574728 | 5.3:-73458270 | MS.gene057066:CDS |
| AAGGAGGTGGTGAAAATGAA+AGG | 0.588012 | 5.3:-73459685 | MS.gene057066:CDS |
| AACGCACGAGAAAGTGATTG+GGG | 0.605913 | 5.3:-73458319 | MS.gene057066:CDS |
| AAAGACATAAATCAAAATGG+AGG | 0.614222 | 5.3:+73456938 | None:intergenic |
| TCTCTCACAGGCTAGATGGA+AGG | 0.618588 | 5.3:-73459704 | None:intergenic |
| AGACATAAATCAAAATGGAG+GGG | 0.626342 | 5.3:+73456940 | None:intergenic |
| GGATCAGACAAATCATGAAG+AGG | 0.629456 | 5.3:+73458280 | None:intergenic |
| ACAGGCTAGATGGAAGGAGG+TGG | 0.630158 | 5.3:-73459698 | None:intergenic |
| GACTTGTTCTAATTGGTGAG+AGG | 0.630409 | 5.3:+73457387 | None:intergenic |
| CTCACAGGCTAGATGGAAGG+AGG | 0.638965 | 5.3:-73459701 | None:intergenic |
| ATCTGCAACATCCAAATACA+GGG | 0.645455 | 5.3:+73458613 | None:intergenic |
| CAATGTGGATGAGAAAGACA+CGG | 0.658001 | 5.3:-73458197 | MS.gene057066:CDS |
| CTCCTGAAGAAGTTGCTCAG+AGG | 0.662017 | 5.3:+73457525 | None:intergenic |
| CATTGAAGGTCAAATTCCGG+AGG | 0.691134 | 5.3:-73457014 | MS.gene057066:CDS |
| TCTCACCAATTAGAACAAGT+CGG | 0.697541 | 5.3:-73457385 | MS.gene057066:CDS |
| TGTTAAAGTAACGCGCAATG+TGG | 0.724729 | 5.3:-73458212 | MS.gene057066:CDS |
| ATTTGACTTGATCATCAACG+AGG | 0.752249 | 5.3:+73457044 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAACTGTA+AGG | + | chr5.3:73458158-73458177 | None:intergenic | 10.0% |
| !! | GAAATTATCTAAAAATTTAG+TGG | + | chr5.3:73458687-73458706 | None:intergenic | 15.0% |
| !! | TTAACAAATTCTAACATTTA+GGG | - | chr5.3:73458739-73458758 | MS.gene057066:intron | 15.0% |
| !! | TTTAACAAATTCTAACATTT+AGG | - | chr5.3:73458738-73458757 | MS.gene057066:intron | 15.0% |
| !!! | ATTTTCATTGTATTCATTTA+TGG | + | chr5.3:73457110-73457129 | None:intergenic | 15.0% |
| !!! | TTTGTTATATGATAGAAATT+TGG | - | chr5.3:73458585-73458604 | MS.gene057066:CDS | 15.0% |
| !! | AGATATTCTTATGTACTTTA+AGG | - | chr5.3:73458484-73458503 | MS.gene057066:intron | 20.0% |
| !! | ATCTAAAAATTTAGTGGTTT+GGG | + | chr5.3:73458681-73458700 | None:intergenic | 20.0% |
| !! | TAACAAATTCTAACATTTAG+GGG | - | chr5.3:73458740-73458759 | MS.gene057066:intron | 20.0% |
| !! | TATCTAAAAATTTAGTGGTT+TGG | + | chr5.3:73458682-73458701 | None:intergenic | 20.0% |
| !! | TTCATTTATTAACAACTGTA+AGG | + | chr5.3:73458201-73458220 | None:intergenic | 20.0% |
| !! | TTGGTTGAAAAATTTAAACA+AGG | - | chr5.3:73459163-73459182 | MS.gene057066:intron | 20.0% |
| !! | TTTCAACATAGATATATGTA+TGG | + | chr5.3:73458227-73458246 | None:intergenic | 20.0% |
| !!! | AATTTGTTAAAATACACTAG+CGG | + | chr5.3:73458729-73458748 | None:intergenic | 20.0% |
| !!! | AGTTTCTCTTATAGTTTTTT+AGG | + | chr5.3:73457320-73457339 | None:intergenic | 20.0% |
| !!! | TTTTAGATAATTTCTCAATC+TGG | - | chr5.3:73458693-73458712 | MS.gene057066:intron | 20.0% |
| ! | AAAATAGATGAATTAAGCGT+AGG | - | chr5.3:73457125-73457144 | MS.gene057066:CDS | 25.0% |
| ! | AACAAATTCTAACATTTAGG+GGG | - | chr5.3:73458741-73458760 | MS.gene057066:intron | 25.0% |
| ! | AATAATTACACTGTGAGAAA+AGG | - | chr5.3:73458114-73458133 | MS.gene057066:intron | 25.0% |
| ! | AGCACTTATAATAGAAAAGA+TGG | - | chr5.3:73457183-73457202 | MS.gene057066:CDS | 25.0% |
| ! | CAAAAATAAAGAGTCATTGA+AGG | - | chr5.3:73458934-73458953 | MS.gene057066:intron | 25.0% |
| ! | GATTTCAAATCCAATTGTAT+AGG | - | chr5.3:73457484-73457503 | MS.gene057066:CDS | 25.0% |
| ! | TATGTTGAAAAGAGAAATGA+TGG | - | chr5.3:73458237-73458256 | MS.gene057066:CDS | 25.0% |
| ! | TTAAACTGAAAACTTACATC+AGG | + | chr5.3:73458537-73458556 | None:intergenic | 25.0% |
| ! | TTTGAAAAAAGAGCAAGATT+CGG | - | chr5.3:73459330-73459349 | MS.gene057066:intron | 25.0% |
| !! | AAAAGAGAAATGATGGAATT+AGG | - | chr5.3:73458244-73458263 | MS.gene057066:CDS | 25.0% |
| !! | ATTCAGATGTATTTAAAGCT+GGG | - | chr5.3:73457833-73457852 | MS.gene057066:intron | 25.0% |
| !! | CTCTGTGGATTTAATTTATT+CGG | - | chr5.3:73458837-73458856 | MS.gene057066:intron | 25.0% |
| !! | TATTCAGATGTATTTAAAGC+TGG | - | chr5.3:73457832-73457851 | MS.gene057066:intron | 25.0% |
| !! | TCTGTGGATTTAATTTATTC+GGG | - | chr5.3:73458838-73458857 | MS.gene057066:intron | 25.0% |
| !!! | AATTGACAGAGTTTTATAAG+AGG | - | chr5.3:73459042-73459061 | MS.gene057066:intron | 25.0% |
| !!! | ATTGACAGAGTTTTATAAGA+GGG | - | chr5.3:73459043-73459062 | MS.gene057066:intron | 25.0% |
| !!! | TCAATGACTCTTTATTTTTG+TGG | + | chr5.3:73458934-73458953 | None:intergenic | 25.0% |
| AAAAGAAAGACAACGAATAC+AGG | - | chr5.3:73456991-73457010 | MS.gene057066:CDS | 30.0% | |
| ACAAATTCTAACATTTAGGG+GGG | - | chr5.3:73458742-73458761 | MS.gene057066:intron | 30.0% | |
| ACAATCTTAGAAAGAGAGTT+GGG | - | chr5.3:73457158-73457177 | MS.gene057066:CDS | 30.0% | |
| ATATATTCTCCTAAACTGCA+TGG | - | chr5.3:73457583-73457602 | MS.gene057066:intron | 30.0% | |
| ATCCTTACTATAGAATCTAC+CGG | + | chr5.3:73457250-73457269 | None:intergenic | 30.0% | |
| CCAAAAGAAACCTATACAAT+TGG | + | chr5.3:73457497-73457516 | None:intergenic | 30.0% | |
| CTGTAAGGAACAAAATGAAT+AGG | + | chr5.3:73458143-73458162 | None:intergenic | 30.0% | |
| GTACAACAGAAATAGTCATA+AGG | + | chr5.3:73458814-73458833 | None:intergenic | 30.0% | |
| GTCAAATTGAAAACCATTGA+AGG | - | chr5.3:73459610-73459629 | MS.gene057066:intron | 30.0% | |
| TAACAACTGTAAGGAACAAT+TGG | + | chr5.3:73458192-73458211 | None:intergenic | 30.0% | |
| TAGAAAAGATGGTGCAAATT+AGG | - | chr5.3:73457194-73457213 | MS.gene057066:CDS | 30.0% | |
| TGAACTGAATATGAACAACT+GGG | - | chr5.3:73458867-73458886 | MS.gene057066:intron | 30.0% | |
| TTAAAGCTGGGGATTATAAT+TGG | - | chr5.3:73457845-73457864 | MS.gene057066:intron | 30.0% | |
| ! | ACATTATCTGAAACAGTTCA+TGG | - | chr5.3:73457869-73457888 | MS.gene057066:intron | 30.0% |
| ! | CCAATTGTATAGGTTTCTTT+TGG | - | chr5.3:73457494-73457513 | MS.gene057066:CDS | 30.0% |
| ! | CCTTCAATGCTTCATTATTT+TGG | + | chr5.3:73459372-73459391 | None:intergenic | 30.0% |
| ! | GAGGGAAAATAACATAGTTT+TGG | + | chr5.3:73458642-73458661 | None:intergenic | 30.0% |
| ! | TACAGAATGCTGAGATTTTA+AGG | + | chr5.3:73459080-73459099 | None:intergenic | 30.0% |
| ! | TTCAGATGTATTTAAAGCTG+GGG | - | chr5.3:73457834-73457853 | MS.gene057066:intron | 30.0% |
| ! | TTCGTTGTCTTTCTTTTCTT+AGG | + | chr5.3:73456988-73457007 | None:intergenic | 30.0% |
| !! | CCAAAATAATGAAGCATTGA+AGG | - | chr5.3:73459369-73459388 | MS.gene057066:intron | 30.0% |
| !! | TACCTGGCTTGATTTATTTT+AGG | + | chr5.3:73458510-73458529 | None:intergenic | 30.0% |
| !! | TTGACAGAGTTTTATAAGAG+GGG | - | chr5.3:73459044-73459063 | MS.gene057066:intron | 30.0% |
| !! | TTTTGTGGTTTTTTTCTTCC+TGG | + | chr5.3:73458919-73458938 | None:intergenic | 30.0% |
| AAATCTCAGCATTCTGTACA+TGG | - | chr5.3:73459082-73459101 | MS.gene057066:intron | 35.0% | |
| AACCATTGAAGGTCAAATTC+CGG | - | chr5.3:73459621-73459640 | MS.gene057066:intron | 35.0% | |
| AATGCTTATCCATGCAGTTT+AGG | + | chr5.3:73457595-73457614 | None:intergenic | 35.0% | |
| AATTAGCTGAAAACTTGGAG+GGG | + | chr5.3:73457671-73457690 | None:intergenic | 35.0% | |
| ACTAATATAACAACTCCGAC+AGG | + | chr5.3:73457902-73457921 | None:intergenic | 35.0% | |
| ACTTAGCCTCTGTAAATCAA+AGG | - | chr5.3:73457075-73457094 | MS.gene057066:CDS | 35.0% | |
| AGTAAGGATAGTAGTTCAGA+TGG | - | chr5.3:73457261-73457280 | MS.gene057066:CDS | 35.0% | |
| ATCTGCAACATCCAAATACA+GGG | + | chr5.3:73458028-73458047 | None:intergenic | 35.0% | |
| ATTTGTCTGATCCTGCAAAA+GGG | - | chr5.3:73458368-73458387 | MS.gene057066:intron | 35.0% | |
| CAATCTTAGAAAGAGAGTTG+GGG | - | chr5.3:73457159-73457178 | MS.gene057066:CDS | 35.0% | |
| CAGTGAATTAGCTGAAAACT+TGG | + | chr5.3:73457676-73457695 | None:intergenic | 35.0% | |
| CAGTGAGAGATACTTCAATT+AGG | - | chr5.3:73457545-73457564 | MS.gene057066:CDS | 35.0% | |
| CTGAACTGAATATGAACAAC+TGG | - | chr5.3:73458866-73458885 | MS.gene057066:intron | 35.0% | |
| GAACTGAATATGAACAACTG+GGG | - | chr5.3:73458868-73458887 | MS.gene057066:intron | 35.0% | |
| GAATTAGCTGAAAACTTGGA+GGG | + | chr5.3:73457672-73457691 | None:intergenic | 35.0% | |
| GACAATCTTAGAAAGAGAGT+TGG | - | chr5.3:73457157-73457176 | MS.gene057066:CDS | 35.0% | |
| GTGTACTTATTTACCCCAAA+GGG | - | chr5.3:73457983-73458002 | MS.gene057066:intron | 35.0% | |
| TATGCAGAAGAGATTGAAGA+AGG | - | chr5.3:73458892-73458911 | MS.gene057066:intron | 35.0% | |
| TCTCACCAATTAGAACAAGT+CGG | - | chr5.3:73459253-73459272 | MS.gene057066:intron | 35.0% | |
| TGAAAAACTACAAGGTGACA+GGG | - | chr5.3:73459492-73459511 | MS.gene057066:intron | 35.0% | |
| TGAATTAGCTGAAAACTTGG+AGG | + | chr5.3:73457673-73457692 | None:intergenic | 35.0% | |
| TGTACTTATTTACCCCAAAG+GGG | - | chr5.3:73457984-73458003 | MS.gene057066:intron | 35.0% | |
| TTCAACCAAGTCCTCTTTAA+AGG | + | chr5.3:73459152-73459171 | None:intergenic | 35.0% | |
| TTGAAAAACTACAAGGTGAC+AGG | - | chr5.3:73459491-73459510 | MS.gene057066:intron | 35.0% | |
| TTGATTTACAGAGGCTAAGT+AGG | + | chr5.3:73457075-73457094 | None:intergenic | 35.0% | |
| TTTCTGTTGTACTATCTCTG+TGG | - | chr5.3:73458822-73458841 | MS.gene057066:intron | 35.0% | |
| TTTGGGCAGAGTTCAAATTT+GGG | + | chr5.3:73458664-73458683 | None:intergenic | 35.0% | |
| ! | AAGCCTTATCCAAGTAAGTA+GGG | + | chr5.3:73457429-73457448 | None:intergenic | 35.0% |
| ! | ACTGCGTTGAAGTTATCTTT+TGG | + | chr5.3:73459196-73459215 | None:intergenic | 35.0% |
| ! | GAGAGTTAAGTTGTGTTTGT+TGG | + | chr5.3:73459438-73459457 | None:intergenic | 35.0% |
| ! | GGACAATTGACAGATTTTCT+CGG | - | chr5.3:73457791-73457810 | MS.gene057066:intron | 35.0% |
| ! | TGTAAGCCTTTGATTTACAG+AGG | + | chr5.3:73457084-73457103 | None:intergenic | 35.0% |
| ! | TTATCTGAAACAGTTCATGG+TGG | - | chr5.3:73457872-73457891 | MS.gene057066:intron | 35.0% |
| ! | TTTCTTTTGGTATCCAAGTC+AGG | - | chr5.3:73457507-73457526 | MS.gene057066:CDS | 35.0% |
| !! | ATTTGACTTGATCATCAACG+AGG | + | chr5.3:73459597-73459616 | None:intergenic | 35.0% |
| AAGACACGGCTGAGAATTTA+AGG | - | chr5.3:73458455-73458474 | MS.gene057066:intron | 40.0% | |
| AAGGAGGTGGTGAAAATGAA+AGG | - | chr5.3:73456953-73456972 | MS.gene057066:CDS | 40.0% | |
| AAGGATAGTAGTTCAGATGG+AGG | - | chr5.3:73457264-73457283 | MS.gene057066:CDS | 40.0% | |
| ACAAGTTCATGAACCTGACT+TGG | + | chr5.3:73457523-73457542 | None:intergenic | 40.0% | |
| ACCTTCTCAACAACATTGTG+AGG | - | chr5.3:73459287-73459306 | MS.gene057066:intron | 40.0% | |
| AGACACGGCTGAGAATTTAA+GGG | - | chr5.3:73458456-73458475 | MS.gene057066:intron | 40.0% | |
| AGACATGCACAGTTTAGCAT+TGG | - | chr5.3:73458075-73458094 | MS.gene057066:intron | 40.0% | |
| AGATGGTGCAAATTAGGCTT+AGG | - | chr5.3:73457200-73457219 | MS.gene057066:CDS | 40.0% | |
| AGATTGCTGATCTTAAAGCC+AGG | - | chr5.3:73459467-73459486 | MS.gene057066:intron | 40.0% | |
| CAATGTGGATGAGAAAGACA+CGG | - | chr5.3:73458441-73458460 | MS.gene057066:intron | 40.0% | |
| CATCTGCAACATCCAAATAC+AGG | + | chr5.3:73458029-73458048 | None:intergenic | 40.0% | |
| CGTGTACTTATTTACCCCAA+AGG | - | chr5.3:73457982-73458001 | MS.gene057066:intron | 40.0% | |
| CTACTTACTTGGATAAGGCT+TGG | - | chr5.3:73457428-73457447 | MS.gene057066:CDS | 40.0% | |
| CTTCTAAACAAAGCAGTCAG+TGG | - | chr5.3:73458557-73458576 | MS.gene057066:CDS | 40.0% | |
| GAACTGTTTGTCCCTGTATT+TGG | - | chr5.3:73458014-73458033 | MS.gene057066:intron | 40.0% | |
| GAAGCTCTATCGAATCTTCA+AGG | - | chr5.3:73459672-73459691 | MS.gene057066:CDS | 40.0% | |
| GACCGGTAGATTCTATAGTA+AGG | - | chr5.3:73457245-73457264 | MS.gene057066:CDS | 40.0% | |
| GAGGATAGTCAGATCACTAA+AGG | - | chr5.3:73457283-73457302 | MS.gene057066:CDS | 40.0% | |
| GATTTGTCTGATCCTGCAAA+AGG | - | chr5.3:73458367-73458386 | MS.gene057066:intron | 40.0% | |
| GGATCAGACAAATCATGAAG+AGG | + | chr5.3:73458361-73458380 | None:intergenic | 40.0% | |
| GGCCTAAAATAAATCAAGCC+AGG | - | chr5.3:73458505-73458524 | MS.gene057066:intron | 40.0% | |
| GTCAGATCACTAAAGGTAGA+AGG | - | chr5.3:73457290-73457309 | MS.gene057066:CDS | 40.0% | |
| GTCTGTGAAAGAAGTCTTTG+TGG | + | chr5.3:73459416-73459435 | None:intergenic | 40.0% | |
| GTTTGGGCAGAGTTCAAATT+TGG | + | chr5.3:73458665-73458684 | None:intergenic | 40.0% | |
| TCAGTATGTAGAGAGAAGAC+CGG | - | chr5.3:73457228-73457247 | MS.gene057066:CDS | 40.0% | |
| TCCTCACAATGTTGTTGAGA+AGG | + | chr5.3:73459291-73459310 | None:intergenic | 40.0% | |
| TCTAATTCAGTTTGAGCCTC+CGG | + | chr5.3:73459643-73459662 | None:intergenic | 40.0% | |
| TGTTAAAGTAACGCGCAATG+TGG | - | chr5.3:73458426-73458445 | MS.gene057066:intron | 40.0% | |
| TTTGGTCAAGAACAGTCATC+AGG | + | chr5.3:73458624-73458643 | None:intergenic | 40.0% | |
| ! | CAAATCATGAAGAGGCATGA+AGG | + | chr5.3:73458353-73458372 | None:intergenic | 40.0% |
| ! | CAAGCCTTATCCAAGTAAGT+AGG | + | chr5.3:73457430-73457449 | None:intergenic | 40.0% |
| ! | CAGTTACTTTGCCATATGGT+TGG | - | chr5.3:73458049-73458068 | MS.gene057066:intron | 40.0% |
| ! | CTATCTAGCTCGTTAATCTC+TGG | + | chr5.3:73457355-73457374 | None:intergenic | 40.0% |
| ! | GACTTGTTCTAATTGGTGAG+AGG | + | chr5.3:73459254-73459273 | None:intergenic | 40.0% |
| ! | GATGCAGTTACTTTGCCATA+TGG | - | chr5.3:73458045-73458064 | MS.gene057066:intron | 40.0% |
| ! | GTGTCACTGTTCTTTGATAC+TGG | - | chr5.3:73457038-73457057 | MS.gene057066:CDS | 40.0% |
| ! | TATCGCCTTTAAAGAGGACT+TGG | - | chr5.3:73459144-73459163 | MS.gene057066:intron | 40.0% |
| ! | TTGACAAGATACCCTTTTGC+AGG | + | chr5.3:73458382-73458401 | None:intergenic | 40.0% |
| !! | CAACACCGACTTGTTCTAAT+TGG | + | chr5.3:73459261-73459280 | None:intergenic | 40.0% |
| !! | GCTGACAAACTTTGAAGTGT+TGG | + | chr5.3:73458972-73458991 | None:intergenic | 40.0% |
| !!! | ACCTTGTAGTTTTTCAAGCC+TGG | + | chr5.3:73459488-73459507 | None:intergenic | 40.0% |
| !!! | GTTTTTTTTCCACTCTGAGC+AGG | - | chr5.3:73457959-73457978 | MS.gene057066:intron | 40.0% |
| AACGCACGAGAAAGTGATTG+GGG | - | chr5.3:73458319-73458338 | MS.gene057066:CDS | 45.0% | |
| ACAGTTCACATTGTCCCCTT+TGG | + | chr5.3:73458001-73458020 | None:intergenic | 45.0% | |
| ACCTGAAACTGTCAACACTG+TGG | - | chr5.3:73457744-73457763 | MS.gene057066:intron | 45.0% | |
| AGCAACTTCTTCAGGAGTTG+AGG | - | chr5.3:73459119-73459138 | MS.gene057066:intron | 45.0% | |
| AGTAAGTAGGGTCGACTACA+TGG | + | chr5.3:73457417-73457436 | None:intergenic | 45.0% | |
| AGTTCACATTGTCCCCTTTG+GGG | + | chr5.3:73457999-73458018 | None:intergenic | 45.0% | |
| CAACGCACGAGAAAGTGATT+GGG | - | chr5.3:73458318-73458337 | MS.gene057066:CDS | 45.0% | |
| CAGTTCACATTGTCCCCTTT+GGG | + | chr5.3:73458000-73458019 | None:intergenic | 45.0% | |
| CATTGAAGGTCAAATTCCGG+AGG | - | chr5.3:73459624-73459643 | MS.gene057066:intron | 45.0% | |
| CGACCCTACTTACTTGGATA+AGG | - | chr5.3:73457423-73457442 | MS.gene057066:CDS | 45.0% | |
| CTCCGGAATTTGACCTTCAA+TGG | + | chr5.3:73459626-73459645 | None:intergenic | 45.0% | |
| GAAGAGATTGAAGAAGGACC+AGG | - | chr5.3:73458898-73458917 | MS.gene057066:intron | 45.0% | |
| GCAACTTCTTCAGGAGTTGA+GGG | - | chr5.3:73459120-73459139 | MS.gene057066:intron | 45.0% | |
| GCCAGGCTTGAAAAACTACA+AGG | - | chr5.3:73459484-73459503 | MS.gene057066:intron | 45.0% | |
| GGCAGAGTTCAAATTTGGGA+GGG | + | chr5.3:73458660-73458679 | None:intergenic | 45.0% | |
| TCAACGCACGAGAAAGTGAT+TGG | - | chr5.3:73458317-73458336 | MS.gene057066:CDS | 45.0% | |
| TGGTGCAAATTAGGCTTAGG+TGG | - | chr5.3:73457203-73457222 | MS.gene057066:CDS | 45.0% | |
| TGTAGTCGACCCTACTTACT+TGG | - | chr5.3:73457417-73457436 | MS.gene057066:CDS | 45.0% | |
| TGTCAACACTGTGGATAGTC+AGG | - | chr5.3:73457753-73457772 | MS.gene057066:intron | 45.0% | |
| ! | ACTTACATCAGGTTGCTACC+TGG | + | chr5.3:73458526-73458545 | None:intergenic | 45.0% |
| ! | GAGGGATATCGCCTTTAAAG+AGG | - | chr5.3:73459138-73459157 | MS.gene057066:intron | 45.0% |
| !! | TCCACAGTGTTGACAGTTTC+AGG | + | chr5.3:73457748-73457767 | None:intergenic | 45.0% |
| AGCCTCTGAGCAACTTCTTC+AGG | - | chr5.3:73459111-73459130 | MS.gene057066:intron | 50.0% | |
| CACTTTCTCGTGCGTTGAAC+TGG | + | chr5.3:73458315-73458334 | None:intergenic | 50.0% | |
| CTCCTGAAGAAGTTGCTCAG+AGG | + | chr5.3:73459116-73459135 | None:intergenic | 50.0% | |
| CTTGATCATCAACGAGGCGA+TGG | + | chr5.3:73459591-73459610 | None:intergenic | 50.0% | |
| GCATGTCTGCTCCAACCATA+TGG | + | chr5.3:73458063-73458082 | None:intergenic | 50.0% | |
| GGGCAGAGTTCAAATTTGGG+AGG | + | chr5.3:73458661-73458680 | None:intergenic | 50.0% | |
| AAGTACACGCCTGCTCAGAG+TGG | + | chr5.3:73457971-73457990 | None:intergenic | 55.0% | |
| GTCAGGCTGCGCGATTCAAA+TGG | - | chr5.3:73457770-73457789 | MS.gene057066:intron | 55.0% | |
| GTTCATGGTGGTCAGCCTGT+CGG | - | chr5.3:73457884-73457903 | MS.gene057066:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 73456949 | 73459711 | 73456949 | ID=MS.gene057066 |
| chr5.3 | mRNA | 73456949 | 73459711 | 73456949 | ID=MS.gene057066.t1;Parent=MS.gene057066 |
| chr5.3 | exon | 73459648 | 73459711 | 73459648 | ID=MS.gene057066.t1.exon1;Parent=MS.gene057066.t1 |
| chr5.3 | CDS | 73459648 | 73459711 | 73459648 | ID=cds.MS.gene057066.t1;Parent=MS.gene057066.t1 |
| chr5.3 | exon | 73458525 | 73458656 | 73458525 | ID=MS.gene057066.t1.exon2;Parent=MS.gene057066.t1 |
| chr5.3 | CDS | 73458525 | 73458656 | 73458525 | ID=cds.MS.gene057066.t1;Parent=MS.gene057066.t1 |
| chr5.3 | exon | 73458183 | 73458358 | 73458183 | ID=MS.gene057066.t1.exon3;Parent=MS.gene057066.t1 |
| chr5.3 | CDS | 73458183 | 73458358 | 73458183 | ID=cds.MS.gene057066.t1;Parent=MS.gene057066.t1 |
| chr5.3 | exon | 73456949 | 73457569 | 73456949 | ID=MS.gene057066.t1.exon4;Parent=MS.gene057066.t1 |
| chr5.3 | CDS | 73456949 | 73457569 | 73456949 | ID=cds.MS.gene057066.t1;Parent=MS.gene057066.t1 |
| Gene Sequence |
| Protein sequence |
