Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017099.t1 | AET00383.1 | 94.6 | 520 | 26 | 1 | 1 | 518 | 30 | 549 | 1.50E-245 | 858.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017099.t1 | Q84WU2 | 56.0 | 257 | 108 | 4 | 2 | 254 | 560 | 815 | 1.4e-74 | 282.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017099.t1 | G7KD55 | 94.6 | 520 | 26 | 1 | 1 | 518 | 30 | 549 | 1.1e-245 | 858.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017099.t1 | MTR_5g091410 | 94.615 | 520 | 26 | 1 | 1 | 518 | 30 | 549 | 0.0 | 926 |
| MS.gene017099.t1 | MTR_5g091450 | 59.900 | 601 | 154 | 9 | 5 | 518 | 192 | 792 | 0.0 | 637 |
| MS.gene017099.t1 | MTR_5g091430 | 59.818 | 550 | 189 | 5 | 1 | 518 | 1 | 550 | 0.0 | 607 |
| MS.gene017099.t1 | MTR_5g091180 | 59.768 | 517 | 162 | 8 | 2 | 490 | 202 | 700 | 0.0 | 526 |
| MS.gene017099.t1 | MTR_5g091550 | 67.361 | 288 | 67 | 4 | 6 | 267 | 183 | 469 | 2.41e-118 | 357 |
| MS.gene017099.t1 | MTR_5g091550 | 67.361 | 288 | 67 | 4 | 6 | 267 | 178 | 464 | 2.48e-118 | 357 |
| MS.gene017099.t1 | MTR_5g086700 | 70.930 | 258 | 71 | 3 | 5 | 258 | 569 | 826 | 1.77e-114 | 364 |
| MS.gene017099.t1 | MTR_5g086700 | 70.930 | 258 | 71 | 3 | 5 | 258 | 569 | 826 | 1.98e-114 | 364 |
| MS.gene017099.t1 | MTR_5g091530 | 64.794 | 267 | 72 | 2 | 6 | 270 | 121 | 367 | 1.31e-111 | 337 |
| MS.gene017099.t1 | MTR_3g079840 | 67.442 | 258 | 80 | 3 | 5 | 258 | 564 | 821 | 7.76e-111 | 355 |
| MS.gene017099.t1 | MTR_3g079840 | 67.442 | 258 | 80 | 3 | 5 | 258 | 565 | 822 | 8.05e-111 | 355 |
| MS.gene017099.t1 | MTR_1g041240 | 58.687 | 259 | 102 | 3 | 5 | 258 | 564 | 822 | 1.36e-89 | 297 |
| MS.gene017099.t1 | MTR_1g041240 | 58.687 | 259 | 102 | 3 | 5 | 258 | 566 | 824 | 1.43e-89 | 297 |
| MS.gene017099.t1 | MTR_1g041240 | 58.687 | 259 | 102 | 3 | 5 | 258 | 565 | 823 | 1.49e-89 | 297 |
| MS.gene017099.t1 | MTR_5g091460 | 77.273 | 44 | 10 | 0 | 1 | 44 | 1 | 44 | 2.95e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017099.t1 | AT5G06600 | 56.667 | 270 | 111 | 4 | 2 | 267 | 562 | 829 | 1.73e-84 | 281 |
| MS.gene017099.t1 | AT5G06600 | 56.667 | 270 | 111 | 4 | 2 | 267 | 561 | 828 | 6.91e-84 | 281 |
| MS.gene017099.t1 | AT5G06600 | 56.667 | 270 | 111 | 4 | 2 | 267 | 562 | 829 | 7.04e-84 | 281 |
| MS.gene017099.t1 | AT3G11910 | 55.556 | 261 | 111 | 4 | 2 | 258 | 559 | 818 | 1.26e-83 | 281 |
| MS.gene017099.t1 | AT3G11910 | 55.556 | 261 | 111 | 4 | 2 | 258 | 559 | 818 | 1.26e-83 | 281 |
| MS.gene017099.t1 | AT3G11910 | 55.556 | 261 | 111 | 4 | 2 | 258 | 560 | 819 | 1.29e-83 | 281 |
| MS.gene017099.t1 | AT3G11910 | 55.556 | 261 | 111 | 4 | 2 | 258 | 560 | 819 | 1.29e-83 | 281 |
Find 86 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACGAATTAAAACTGTTTC+TGG | 0.158531 | 5.1:-72827933 | MS.gene017099:CDS |
| TACCGTAGCTCCTCTCTTTC+AGG | 0.194717 | 5.1:+72827735 | None:intergenic |
| CAGCTCAATTCCAGCGCTTT+TGG | 0.211067 | 5.1:-72828278 | MS.gene017099:CDS |
| ACAGGAAAACACTTGACTTT+TGG | 0.284130 | 5.1:+72827261 | None:intergenic |
| AGCAAATACATGAATCAAAA+TGG | 0.300931 | 5.1:+72826077 | None:intergenic |
| CCTCCCTGATCAACTTCTTC+AGG | 0.313808 | 5.1:-72826666 | MS.gene017099:CDS |
| GAAAATGTTGCTAAAGAGTT+TGG | 0.324127 | 5.1:-72828306 | MS.gene017099:CDS |
| TCTATATCTGAGGGACAAAA+AGG | 0.328583 | 5.1:+72826899 | None:intergenic |
| AGGATAGCGGATATGTTTCT+TGG | 0.334831 | 5.1:+72827072 | None:intergenic |
| AATGTTAATTTCTTCTCAAC+AGG | 0.339875 | 5.1:+72827243 | None:intergenic |
| GAAATTTGCTGATCAAATTC+CGG | 0.348773 | 5.1:-72826159 | MS.gene017099:CDS |
| ACGAAGTTAAATAAATTTGC+TGG | 0.349648 | 5.1:-72827573 | MS.gene017099:CDS |
| GAAGACCTTGCAGAACAAAT+TGG | 0.355559 | 5.1:-72829106 | MS.gene017099:CDS |
| TTACTTGTACACTATTATAA+AGG | 0.377852 | 5.1:-72829279 | MS.gene017099:intron |
| ATTAAAACTGTTTCTGGAAG+TGG | 0.395656 | 5.1:-72827927 | MS.gene017099:CDS |
| TCCGGAGCACGAAACTGAAT+TGG | 0.406924 | 5.1:-72826141 | MS.gene017099:CDS |
| CCCACTGCACCACTCAATAT+CGG | 0.409594 | 5.1:-72827795 | MS.gene017099:CDS |
| TCCAATTCAGTTTCGTGCTC+CGG | 0.414367 | 5.1:+72826140 | None:intergenic |
| ATCAACTTCTTCAGGAATTG+AGG | 0.415620 | 5.1:-72826658 | MS.gene017099:CDS |
| TTCCAATGATGATTCATCTT+CGG | 0.420701 | 5.1:+72826874 | None:intergenic |
| CAAGAGAGTTGAGTTCTGTT+TGG | 0.420830 | 5.1:+72826339 | None:intergenic |
| AATTCCTGAAGAAGTTGATC+AGG | 0.436725 | 5.1:+72826662 | None:intergenic |
| TCCATGTATGAAAGAACATT+AGG | 0.441990 | 5.1:+72827052 | None:intergenic |
| TCCTAATGTTCTTTCATACA+TGG | 0.442035 | 5.1:-72827053 | MS.gene017099:CDS |
| TGCAATCGACAAAGTTATAT+CGG | 0.444376 | 5.1:-72826729 | MS.gene017099:CDS |
| CCGTTCTATGGCAGTTATGC+TGG | 0.448933 | 5.1:-72827639 | MS.gene017099:intron |
| ATCCGAAGATGAATCATCAT+TGG | 0.450460 | 5.1:-72826876 | MS.gene017099:CDS |
| CCGGGATAATGAGGAATTGA+AGG | 0.460597 | 5.1:-72826408 | MS.gene017099:CDS |
| GTTGTTAGATCTTGATGATA+TGG | 0.461546 | 5.1:-72826771 | MS.gene017099:CDS |
| TGAAGAGATCGAACTTTATG+AGG | 0.464839 | 5.1:-72827538 | MS.gene017099:intron |
| AAATGGAGGGTTTGCCCTCA+AGG | 0.477451 | 5.1:+72826094 | None:intergenic |
| TCAACTTCTTCAGGAATTGA+GGG | 0.478362 | 5.1:-72826657 | MS.gene017099:CDS |
| GAGAGTTGAGTTCTGTTTGG+TGG | 0.479747 | 5.1:+72826342 | None:intergenic |
| TAAAGTTCGATCTCTTCATC+AGG | 0.486377 | 5.1:+72827543 | None:intergenic |
| GCCGAGATGGTCGACATGTA+TGG | 0.498312 | 5.1:+72828235 | None:intergenic |
| TTGGTTGTAAAATTTAAACT+AGG | 0.511006 | 5.1:-72826614 | MS.gene017099:CDS |
| CATTTCCAATTTGTTCTGCA+AGG | 0.515390 | 5.1:+72829101 | None:intergenic |
| CTTGATCAATAGCGAGGCGA+TGG | 0.523992 | 5.1:+72826189 | None:intergenic |
| TCCGATATTGAGTGGTGCAG+TGG | 0.533670 | 5.1:+72827794 | None:intergenic |
| TCTGGAAGTGGAGCGTGGGC+TGG | 0.536325 | 5.1:-72827915 | MS.gene017099:intron |
| ATGGTAGATGTGGATGTCAT+TGG | 0.537197 | 5.1:-72826752 | MS.gene017099:CDS |
| AACTTCGTTAAGATTTCTGA+TGG | 0.538741 | 5.1:+72827588 | None:intergenic |
| AGCTAAGAAGAGCACCGACC+GGG | 0.542103 | 5.1:-72826426 | MS.gene017099:CDS |
| GAGCACCGACCGGGATAATG+AGG | 0.542312 | 5.1:-72826417 | MS.gene017099:CDS |
| TTTCCCATATCCAAAAGCGC+TGG | 0.542428 | 5.1:+72828268 | None:intergenic |
| ATCGACAAAGTTATATCGGA+AGG | 0.546426 | 5.1:-72826725 | MS.gene017099:CDS |
| GGAATATGTGTACAATCGCC+AGG | 0.551328 | 5.1:-72827032 | MS.gene017099:intron |
| GAAGGTCTACAAAACCTTGA+GGG | 0.554427 | 5.1:-72826108 | MS.gene017099:CDS |
| CAAAAGCGCTGGAATTGAGC+TGG | 0.558135 | 5.1:+72828279 | None:intergenic |
| CCTTCAATTCCTCATTATCC+CGG | 0.561287 | 5.1:+72826408 | None:intergenic |
| CTGTTTCTGGAAGTGGAGCG+TGG | 0.563550 | 5.1:-72827920 | MS.gene017099:CDS |
| CCGATATTGAGTGGTGCAGT+GGG | 0.565192 | 5.1:+72827795 | None:intergenic |
| CAATTCCTCATTATCCCGGT+CGG | 0.565614 | 5.1:+72826412 | None:intergenic |
| ACCATACATGTCGACCATCT+CGG | 0.571073 | 5.1:-72828236 | MS.gene017099:CDS |
| ATCTTCGGATTCTATATCTG+AGG | 0.572312 | 5.1:+72826889 | None:intergenic |
| TCTTCGGATTCTATATCTGA+GGG | 0.574584 | 5.1:+72826890 | None:intergenic |
| CCACTCAATATCGGAGAGGA+TGG | 0.576689 | 5.1:-72827786 | MS.gene017099:CDS |
| CAATGAATGCAGTTAGACAA+TGG | 0.576903 | 5.1:-72827133 | MS.gene017099:intron |
| ATGTGTGTCAAAAGCCGAGA+TGG | 0.577209 | 5.1:+72828222 | None:intergenic |
| AGTAAACTTCAATGTAGTCA+AGG | 0.582753 | 5.1:-72826579 | MS.gene017099:CDS |
| GTTATATGATCCTGAAAGAG+AGG | 0.584929 | 5.1:-72827745 | MS.gene017099:CDS |
| CAGCTAAGAAGAGCACCGAC+CGG | 0.586462 | 5.1:-72826427 | MS.gene017099:CDS |
| TTCTGTTTGGTGGATGTCGA+GGG | 0.586793 | 5.1:+72826352 | None:intergenic |
| ATCCTGAAAGAGAGGAGCTA+CGG | 0.592917 | 5.1:-72827737 | MS.gene017099:intron |
| GTTCTGTTTGGTGGATGTCG+AGG | 0.599369 | 5.1:+72826351 | None:intergenic |
| TTGTAGACCTTGACAAAGTG+AGG | 0.603348 | 5.1:-72829063 | MS.gene017099:CDS |
| TCTTGATGATATGGTAGATG+TGG | 0.605563 | 5.1:-72826762 | MS.gene017099:CDS |
| AAATACATGAATCAAAATGG+AGG | 0.606725 | 5.1:+72826080 | None:intergenic |
| AATACATGAATCAAAATGGA+GGG | 0.610120 | 5.1:+72826081 | None:intergenic |
| ACTTTCTCAACAAAATTGAG+TGG | 0.612126 | 5.1:-72826490 | MS.gene017099:CDS |
| TGTTTCTGGAAGTGGAGCGT+GGG | 0.613081 | 5.1:-72827919 | MS.gene017099:CDS |
| TGAATTGGAAGGTCATGAGA+AGG | 0.617326 | 5.1:-72826126 | MS.gene017099:CDS |
| TCTATGGCAGTTATGCTGGA+AGG | 0.627842 | 5.1:-72827635 | MS.gene017099:intron |
| GGAAACTCCTCACTTTGTCA+AGG | 0.635577 | 5.1:+72829056 | None:intergenic |
| ATTCCTGAAGAAGTTGATCA+GGG | 0.638559 | 5.1:+72826663 | None:intergenic |
| CCATCCTCTCCGATATTGAG+TGG | 0.642904 | 5.1:+72827786 | None:intergenic |
| AGAAGGTCTACAAAACCTTG+AGG | 0.643862 | 5.1:-72826109 | MS.gene017099:CDS |
| GAGCACGAAACTGAATTGGA+AGG | 0.650443 | 5.1:-72826137 | MS.gene017099:CDS |
| TCGACAAAGTTATATCGGAA+GGG | 0.656260 | 5.1:-72826724 | MS.gene017099:CDS |
| ATGAAAGAACATTAGGATAG+CGG | 0.658992 | 5.1:+72827059 | None:intergenic |
| ACTTGACTTGATCAATAGCG+AGG | 0.661642 | 5.1:+72826183 | None:intergenic |
| ACAATTGAAAGAGCTTCACA+AGG | 0.683760 | 5.1:-72827957 | MS.gene017099:CDS |
| AATTAATGATATGATAGACG+AGG | 0.692673 | 5.1:-72826798 | MS.gene017099:CDS |
| ATTAACATTTGAAGATAACG+AGG | 0.703915 | 5.1:-72827229 | MS.gene017099:intron |
| TGCACCACTCAATATCGGAG+AGG | 0.716904 | 5.1:-72827790 | MS.gene017099:CDS |
| CCTGAAGAAGTTGATCAGGG+AGG | 0.753049 | 5.1:+72826666 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGAAATTAACATTTTAAT+TGG | - | chr5.1:72828202-72828221 | MS.gene017099:intron | 10.0% |
| !! | AAGATATTATAATACTTCTT+AGG | - | chr5.1:72826241-72826260 | MS.gene017099:CDS | 15.0% |
| !! | CTTTATAAAATTGAATTCTA+AGG | + | chr5.1:72826607-72826626 | None:intergenic | 15.0% |
| !! | GACAAACTTCATTATTATAT+AGG | - | chr5.1:72827555-72827574 | MS.gene017099:CDS | 20.0% |
| !! | TTACTTGTACACTATTATAA+AGG | - | chr5.1:72826102-72826121 | MS.gene017099:CDS | 20.0% |
| !! | TTCAATCCTTACTATTTATT+AGG | + | chr5.1:72826490-72826509 | None:intergenic | 20.0% |
| !! | TTGGTTGTAAAATTTAAACT+AGG | - | chr5.1:72828767-72828786 | MS.gene017099:intron | 20.0% |
| !!! | CCATCTTAGATTTTTATATT+CGG | + | chr5.1:72826640-72826659 | None:intergenic | 20.0% |
| !!! | CTAAAAGTATGTTTATAAGT+AGG | - | chr5.1:72826569-72826588 | MS.gene017099:CDS | 20.0% |
| !!! | CTACTTATAAACATACTTTT+AGG | + | chr5.1:72826571-72826590 | None:intergenic | 20.0% |
| !!! | CTTCATAGTTTATGATTTTT+TGG | - | chr5.1:72827259-72827278 | MS.gene017099:CDS | 20.0% |
| !!! | TATAAAATTGAATTCTAAGG+TGG | + | chr5.1:72826604-72826623 | None:intergenic | 20.0% |
| !!! | TGATTTTATGTGATATATGT+AGG | - | chr5.1:72827053-72827072 | MS.gene017099:CDS | 20.0% |
| ! | AACCTTAAAAAGAAAATACC+TGG | + | chr5.1:72828370-72828389 | None:intergenic | 25.0% |
| ! | AACTTACGAAAATAACAGAT+GGG | + | chr5.1:72827016-72827035 | None:intergenic | 25.0% |
| ! | AATACATTTGATGTCAACTA+AGG | + | chr5.1:72827721-72827740 | None:intergenic | 25.0% |
| ! | AATGTTAATTTCTTCTCAAC+AGG | + | chr5.1:72828141-72828160 | None:intergenic | 25.0% |
| ! | AATTAATGATATGATAGACG+AGG | - | chr5.1:72828583-72828602 | MS.gene017099:intron | 25.0% |
| ! | ACAAACAAAACAACATATCT+AGG | + | chr5.1:72826145-72826164 | None:intergenic | 25.0% |
| ! | ACGAAGTTAAATAAATTTGC+TGG | - | chr5.1:72827808-72827827 | MS.gene017099:intron | 25.0% |
| ! | AGAAACAGGATAAGAATAAA+TGG | + | chr5.1:72828422-72828441 | None:intergenic | 25.0% |
| ! | ATAAACTATGAAGCTTAAAG+CGG | + | chr5.1:72827252-72827271 | None:intergenic | 25.0% |
| ! | ATTAACATTTGAAGATAACG+AGG | - | chr5.1:72828152-72828171 | MS.gene017099:intron | 25.0% |
| ! | CAAACAAAACAACATATCTA+GGG | + | chr5.1:72826144-72826163 | None:intergenic | 25.0% |
| ! | CCGAATATAAAAATCTAAGA+TGG | - | chr5.1:72826637-72826656 | MS.gene017099:CDS | 25.0% |
| ! | GAAACAGGATAAGAATAAAT+GGG | + | chr5.1:72828421-72828440 | None:intergenic | 25.0% |
| ! | TGCTCTATATAATCACATTA+GGG | + | chr5.1:72826465-72826484 | None:intergenic | 25.0% |
| ! | TTGAATCTAATGATCTGTAA+AGG | - | chr5.1:72828031-72828050 | MS.gene017099:intron | 25.0% |
| !! | TTTATTCTTATCCTGTTTCT+AGG | - | chr5.1:72828422-72828441 | MS.gene017099:intron | 25.0% |
| !!! | ACCTACAATTTTAGTCAAAA+TGG | + | chr5.1:72827401-72827420 | None:intergenic | 25.0% |
| !!! | CCTACAATTTTAGTCAAAAT+GGG | + | chr5.1:72827400-72827419 | None:intergenic | 25.0% |
| !!! | TACAACCAAGTCTTTTTTAA+AGG | + | chr5.1:72828756-72828775 | None:intergenic | 25.0% |
| !!! | TATTTTAGATGCATCTTCAT+AGG | - | chr5.1:72826848-72826867 | MS.gene017099:CDS | 25.0% |
| !!! | TGTGATTTTAACATATGTTG+CGG | - | chr5.1:72827684-72827703 | MS.gene017099:intron | 25.0% |
| !!! | TTTTGACTAAAATTGTAGGT+TGG | - | chr5.1:72827401-72827420 | MS.gene017099:intron | 25.0% |
| AAAAATCACAATGCTCTAGT+TGG | - | chr5.1:72826895-72826914 | MS.gene017099:CDS | 30.0% | |
| AACTTCGTTAAGATTTCTGA+TGG | + | chr5.1:72827796-72827815 | None:intergenic | 30.0% | |
| ACTACAGATCATAGAGAAAT+TGG | + | chr5.1:72827361-72827380 | None:intergenic | 30.0% | |
| ACTTTCTCAACAAAATTGAG+TGG | - | chr5.1:72828891-72828910 | MS.gene017099:intron | 30.0% | |
| AGTAAACTTCAATGTAGTCA+AGG | - | chr5.1:72828802-72828821 | MS.gene017099:intron | 30.0% | |
| ATGAAAGAACATTAGGATAG+CGG | + | chr5.1:72828325-72828344 | None:intergenic | 30.0% | |
| CAACTTACGAAAATAACAGA+TGG | + | chr5.1:72827017-72827036 | None:intergenic | 30.0% | |
| GAAAATGTTGCTAAAGAGTT+TGG | - | chr5.1:72827075-72827094 | MS.gene017099:CDS | 30.0% | |
| GTGCTCTATATAATCACATT+AGG | + | chr5.1:72826466-72826485 | None:intergenic | 30.0% | |
| TAAACTATGAAGCTTAAAGC+GGG | + | chr5.1:72827251-72827270 | None:intergenic | 30.0% | |
| TAATCAATTCACAACCAAAC+TGG | + | chr5.1:72826815-72826834 | None:intergenic | 30.0% | |
| TCAAATGTATTTCCGTTCTA+TGG | - | chr5.1:72827730-72827749 | MS.gene017099:intron | 30.0% | |
| TCCATGTATGAAAGAACATT+AGG | + | chr5.1:72828332-72828351 | None:intergenic | 30.0% | |
| TCCTAATGTTCTTTCATACA+TGG | - | chr5.1:72828328-72828347 | MS.gene017099:intron | 30.0% | |
| TGACGAATTAAAACTGTTTC+TGG | - | chr5.1:72827448-72827467 | MS.gene017099:intron | 30.0% | |
| TGCAATCGACAAAGTTATAT+CGG | - | chr5.1:72828652-72828671 | MS.gene017099:intron | 30.0% | |
| TTAACATATGTTGCGGTAAA+AGG | - | chr5.1:72827691-72827710 | MS.gene017099:intron | 30.0% | |
| TTCCAATGATGATTCATCTT+CGG | + | chr5.1:72828510-72828529 | None:intergenic | 30.0% | |
| ! | GTTGTTAGATCTTGATGATA+TGG | - | chr5.1:72828610-72828629 | MS.gene017099:intron | 30.0% |
| ! | TATCGCCTTTAAAAAAGACT+TGG | - | chr5.1:72828748-72828767 | MS.gene017099:intron | 30.0% |
| ! | TTTTAAGCCGTATCTAATGT+GGG | + | chr5.1:72826761-72826780 | None:intergenic | 30.0% |
| ! | TTTTTATGAAATTTGGCAGC+AGG | + | chr5.1:72827908-72827927 | None:intergenic | 30.0% |
| !! | AAAATTGAATTCTAAGGTGG+AGG | + | chr5.1:72826601-72826620 | None:intergenic | 30.0% |
| !! | ATTAAAACTGTTTCTGGAAG+TGG | - | chr5.1:72827454-72827473 | MS.gene017099:intron | 30.0% |
| !! | GAAATTTGCTGATCAAATTC+CGG | - | chr5.1:72829222-72829241 | MS.gene017099:intron | 30.0% |
| !! | TGAATGTTGTTTCCTTGTTT+AGG | - | chr5.1:72828457-72828476 | MS.gene017099:intron | 30.0% |
| !! | TTTTTAAGCCGTATCTAATG+TGG | + | chr5.1:72826762-72826781 | None:intergenic | 30.0% |
| !!! | CATCTGTTATTTTCGTAAGT+TGG | - | chr5.1:72827015-72827034 | MS.gene017099:intron | 30.0% |
| !!! | CCCATTTTGACTAAAATTGT+AGG | - | chr5.1:72827397-72827416 | MS.gene017099:intron | 30.0% |
| AATGTCTAATCTTGAGTGTG+AGG | - | chr5.1:72826722-72826741 | MS.gene017099:CDS | 35.0% | |
| ACAATTGAAAGAGCTTCACA+AGG | - | chr5.1:72827424-72827443 | MS.gene017099:intron | 35.0% | |
| AGCACGCCTAATAAATAGTA+AGG | - | chr5.1:72826481-72826500 | MS.gene017099:CDS | 35.0% | |
| ATACGAGACTCTCAACAAAA+AGG | + | chr5.1:72826534-72826553 | None:intergenic | 35.0% | |
| ATCAACTTCTTCAGGAATTG+AGG | - | chr5.1:72828723-72828742 | MS.gene017099:intron | 35.0% | |
| ATCAGAGTCAATCCAAGATT+TGG | - | chr5.1:72826661-72826680 | MS.gene017099:CDS | 35.0% | |
| ATCCGAAGATGAATCATCAT+TGG | - | chr5.1:72828505-72828524 | MS.gene017099:intron | 35.0% | |
| ATCGACAAAGTTATATCGGA+AGG | - | chr5.1:72828656-72828675 | MS.gene017099:intron | 35.0% | |
| ATCTTCGGATTCTATATCTG+AGG | + | chr5.1:72828495-72828514 | None:intergenic | 35.0% | |
| ATGTCTAATCTTGAGTGTGA+GGG | - | chr5.1:72826723-72826742 | MS.gene017099:CDS | 35.0% | |
| ATTTCTTAGTATGTGCCAAC+CGG | + | chr5.1:72828190-72828209 | None:intergenic | 35.0% | |
| CAATGAATGCAGTTAGACAA+TGG | - | chr5.1:72828248-72828267 | MS.gene017099:CDS | 35.0% | |
| CACTCAAGATTAGACATTTG+AGG | + | chr5.1:72826720-72826739 | None:intergenic | 35.0% | |
| CATGCTTGAAAAACTACAAG+GGG | - | chr5.1:72829090-72829109 | MS.gene017099:CDS | 35.0% | |
| CCATGCTTGAAAAACTACAA+GGG | - | chr5.1:72829089-72829108 | MS.gene017099:CDS | 35.0% | |
| CTAATTTCCTGCACAACAAT+AGG | + | chr5.1:72828093-72828112 | None:intergenic | 35.0% | |
| GACAAAAAGGAACCTAAACA+AGG | + | chr5.1:72828472-72828491 | None:intergenic | 35.0% | |
| GTTATATGATCCTGAAAGAG+AGG | - | chr5.1:72827636-72827655 | MS.gene017099:intron | 35.0% | |
| TAAAGTTCGATCTCTTCATC+AGG | + | chr5.1:72827841-72827860 | None:intergenic | 35.0% | |
| TCAACTTCTTCAGGAATTGA+GGG | - | chr5.1:72828724-72828743 | MS.gene017099:intron | 35.0% | |
| TCATCGTTACTCTCTTTGAT+TGG | - | chr5.1:72826391-72826410 | MS.gene017099:CDS | 35.0% | |
| TCGACAAAGTTATATCGGAA+GGG | - | chr5.1:72828657-72828676 | MS.gene017099:intron | 35.0% | |
| TCTATATCTGAGGGACAAAA+AGG | + | chr5.1:72828485-72828504 | None:intergenic | 35.0% | |
| TCTTCGGATTCTATATCTGA+GGG | + | chr5.1:72828494-72828513 | None:intergenic | 35.0% | |
| TGAAGAGATCGAACTTTATG+AGG | - | chr5.1:72827843-72827862 | MS.gene017099:intron | 35.0% | |
| TTCAAGATAAGCCTAGAAAC+AGG | + | chr5.1:72828436-72828455 | None:intergenic | 35.0% | |
| ! | AATTCCTGAAGAAGTTGATC+AGG | + | chr5.1:72828722-72828741 | None:intergenic | 35.0% |
| ! | ACAGGAAAACACTTGACTTT+TGG | + | chr5.1:72828123-72828142 | None:intergenic | 35.0% |
| ! | ATGACTTGTCAGAACAGAAA+GGG | - | chr5.1:72827983-72828002 | MS.gene017099:intron | 35.0% |
| ! | ATTCCTGAAGAAGTTGATCA+GGG | + | chr5.1:72828721-72828740 | None:intergenic | 35.0% |
| ! | CATTTCCAATTTGTTCTGCA+AGG | + | chr5.1:72826283-72826302 | None:intergenic | 35.0% |
| ! | CGCCAGGTATTTTCTTTTTA+AGG | - | chr5.1:72828365-72828384 | MS.gene017099:intron | 35.0% |
| ! | GATTGAAGTGCATTAACTTG+TGG | - | chr5.1:72826503-72826522 | MS.gene017099:CDS | 35.0% |
| ! | TATGACTTGTCAGAACAGAA+AGG | - | chr5.1:72827982-72828001 | MS.gene017099:intron | 35.0% |
| ! | TCTTGATGATATGGTAGATG+TGG | - | chr5.1:72828619-72828638 | MS.gene017099:intron | 35.0% |
| ! | TTTTCAAAGAACACGATGCA+AGG | + | chr5.1:72827949-72827968 | None:intergenic | 35.0% |
| ! | TTTTGTTGAGAGTCTCGTAT+TGG | - | chr5.1:72826534-72826553 | MS.gene017099:CDS | 35.0% |
| AACGAGGTATAGTACATACC+CGG | - | chr5.1:72828168-72828187 | MS.gene017099:intron | 40.0% | |
| AATTGTGCCTATTGTTGTGC+AGG | - | chr5.1:72828083-72828102 | MS.gene017099:intron | 40.0% | |
| ACATATGTTGCGGTAAAAGG+TGG | - | chr5.1:72827694-72827713 | MS.gene017099:intron | 40.0% | |
| AGAAGGTCTACAAAACCTTG+AGG | - | chr5.1:72829272-72829291 | MS.gene017099:intron | 40.0% | |
| AGAGTCAATCCAAGATTTGG+TGG | - | chr5.1:72826664-72826683 | MS.gene017099:CDS | 40.0% | |
| ATGGTAGATGTGGATGTCAT+TGG | - | chr5.1:72828629-72828648 | MS.gene017099:intron | 40.0% | |
| CAAGAGAGTTGAGTTCTGTT+TGG | + | chr5.1:72829045-72829064 | None:intergenic | 40.0% | |
| CCTTCAATTCCTCATTATCC+CGG | + | chr5.1:72828976-72828995 | None:intergenic | 40.0% | |
| GAAGACCTTGCAGAACAAAT+TGG | - | chr5.1:72826275-72826294 | MS.gene017099:CDS | 40.0% | |
| GAAGGTCTACAAAACCTTGA+GGG | - | chr5.1:72829273-72829292 | MS.gene017099:intron | 40.0% | |
| GAGATCGAACTTTATGAGGT+TGG | - | chr5.1:72827847-72827866 | MS.gene017099:intron | 40.0% | |
| GCCATGCTTGAAAAACTACA+AGG | - | chr5.1:72829088-72829107 | MS.gene017099:CDS | 40.0% | |
| GTAGAGTCCCACATTAGATA+CGG | - | chr5.1:72826751-72826770 | MS.gene017099:CDS | 40.0% | |
| TGAATTGGAAGGTCATGAGA+AGG | - | chr5.1:72829255-72829274 | MS.gene017099:intron | 40.0% | |
| TTGAGAGTCTCGTATTGGAT+GGG | - | chr5.1:72826539-72826558 | MS.gene017099:CDS | 40.0% | |
| TTGTAGACCTTGACAAAGTG+AGG | - | chr5.1:72826318-72826337 | MS.gene017099:CDS | 40.0% | |
| TTTCTTAGTATGTGCCAACC+GGG | + | chr5.1:72828189-72828208 | None:intergenic | 40.0% | |
| ! | AATTCCAGCGCTTTTGGATA+TGG | - | chr5.1:72827109-72827128 | MS.gene017099:CDS | 40.0% |
| ! | ACTTGACTTGATCAATAGCG+AGG | + | chr5.1:72829201-72829220 | None:intergenic | 40.0% |
| ! | ATTCCAGCGCTTTTGGATAT+GGG | - | chr5.1:72827110-72827129 | MS.gene017099:CDS | 40.0% |
| ! | GACGTCGTTTAACGTTTTCA+AGG | - | chr5.1:72826361-72826380 | MS.gene017099:CDS | 40.0% |
| ! | GAGTCAATCCAAGATTTGGT+GGG | - | chr5.1:72826665-72826684 | MS.gene017099:CDS | 40.0% |
| ! | TTTGGTGGGTCATTTGGTAT+CGG | - | chr5.1:72826679-72826698 | MS.gene017099:CDS | 40.0% |
| !! | AGGATAGCGGATATGTTTCT+TGG | + | chr5.1:72828312-72828331 | None:intergenic | 40.0% |
| !!! | CCCTTGTAGTTTTTCAAGCA+TGG | + | chr5.1:72829092-72829111 | None:intergenic | 40.0% |
| ACCATACATGTCGACCATCT+CGG | - | chr5.1:72827145-72827164 | MS.gene017099:intron | 45.0% | |
| AGGTATAGTACATACCCGGT+TGG | - | chr5.1:72828172-72828191 | MS.gene017099:intron | 45.0% | |
| ATCCTGAAAGAGAGGAGCTA+CGG | - | chr5.1:72827644-72827663 | MS.gene017099:intron | 45.0% | |
| ATGTGTGTCAAAAGCCGAGA+TGG | + | chr5.1:72827162-72827181 | None:intergenic | 45.0% | |
| CAATTCCTCATTATCCCGGT+CGG | + | chr5.1:72828972-72828991 | None:intergenic | 45.0% | |
| CATACGTCACGTGAATCTTG+TGG | - | chr5.1:72826929-72826948 | MS.gene017099:intron | 45.0% | |
| CCAAATGACCCACCAAATCT+TGG | + | chr5.1:72826676-72826695 | None:intergenic | 45.0% | |
| CCAGCATAACTGCCATAGAA+CGG | + | chr5.1:72827745-72827764 | None:intergenic | 45.0% | |
| CCGGGATAATGAGGAATTGA+AGG | - | chr5.1:72828973-72828992 | MS.gene017099:intron | 45.0% | |
| CGAGACTCTCAACAAAAAGG+TGG | + | chr5.1:72826531-72826550 | None:intergenic | 45.0% | |
| CTTCCTCTAAATGCTTGCGA+GGG | - | chr5.1:72827299-72827318 | MS.gene017099:intron | 45.0% | |
| GAGAGTTGAGTTCTGTTTGG+TGG | + | chr5.1:72829042-72829061 | None:intergenic | 45.0% | |
| GAGCACGAAACTGAATTGGA+AGG | - | chr5.1:72829244-72829263 | MS.gene017099:intron | 45.0% | |
| GGAAACTCCTCACTTTGTCA+AGG | + | chr5.1:72826328-72826347 | None:intergenic | 45.0% | |
| GGAATATGTGTACAATCGCC+AGG | - | chr5.1:72828349-72828368 | MS.gene017099:intron | 45.0% | |
| GTCTCGTATTGGATGGGATA+TGG | - | chr5.1:72826545-72826564 | MS.gene017099:CDS | 45.0% | |
| GTTGAGAGTCTCGTATTGGA+TGG | - | chr5.1:72826538-72826557 | MS.gene017099:CDS | 45.0% | |
| TCCAATTCAGTTTCGTGCTC+CGG | + | chr5.1:72829244-72829263 | None:intergenic | 45.0% | |
| TCTATGGCAGTTATGCTGGA+AGG | - | chr5.1:72827746-72827765 | MS.gene017099:CDS | 45.0% | |
| TCTCACCTTACAAGCCAGTT+TGG | - | chr5.1:72826798-72826817 | MS.gene017099:CDS | 45.0% | |
| TCTTCCTCTAAATGCTTGCG+AGG | - | chr5.1:72827298-72827317 | MS.gene017099:intron | 45.0% | |
| ! | TTCTGTTTGGTGGATGTCGA+GGG | + | chr5.1:72829032-72829051 | None:intergenic | 45.0% |
| ! | TTGGTGGGTCATTTGGTATC+GGG | - | chr5.1:72826680-72826699 | MS.gene017099:CDS | 45.0% |
| ! | TTTCCCATATCCAAAAGCGC+TGG | + | chr5.1:72827116-72827135 | None:intergenic | 45.0% |
| !! | ACGACGTCTGCTTTTGAACA+CGG | + | chr5.1:72826349-72826368 | None:intergenic | 45.0% |
| !! | CACAACCAAACTGGCTTGTA+AGG | + | chr5.1:72826806-72826825 | None:intergenic | 45.0% |
| !! | CCAAGATTTGGTGGGTCATT+TGG | - | chr5.1:72826673-72826692 | MS.gene017099:CDS | 45.0% |
| !!! | ATTTAAATTTTTATGAAATT+TGG | + | chr5.1:72827915-72827934 | None:intergenic | 5.0% |
| AAATGGAGGGTTTGCCCTCA+AGG | + | chr5.1:72829290-72829309 | None:intergenic | 50.0% | |
| CCACTCAATATCGGAGAGGA+TGG | - | chr5.1:72827595-72827614 | MS.gene017099:CDS | 50.0% | |
| CCATCCTCTCCGATATTGAG+TGG | + | chr5.1:72827598-72827617 | None:intergenic | 50.0% | |
| CCCACTGCACCACTCAATAT+CGG | - | chr5.1:72827586-72827605 | MS.gene017099:CDS | 50.0% | |
| CCGATATTGAGTGGTGCAGT+GGG | + | chr5.1:72827589-72827608 | None:intergenic | 50.0% | |
| CCGTTCTATGGCAGTTATGC+TGG | - | chr5.1:72827742-72827761 | MS.gene017099:CDS | 50.0% | |
| CCTCCCTGATCAACTTCTTC+AGG | - | chr5.1:72828715-72828734 | MS.gene017099:intron | 50.0% | |
| CTTGATCAATAGCGAGGCGA+TGG | + | chr5.1:72829195-72829214 | None:intergenic | 50.0% | |
| TACCGTAGCTCCTCTCTTTC+AGG | + | chr5.1:72827649-72827668 | None:intergenic | 50.0% | |
| TCCGATATTGAGTGGTGCAG+TGG | + | chr5.1:72827590-72827609 | None:intergenic | 50.0% | |
| TCCGGAGCACGAAACTGAAT+TGG | - | chr5.1:72829240-72829259 | MS.gene017099:intron | 50.0% | |
| TGCACCACTCAATATCGGAG+AGG | - | chr5.1:72827591-72827610 | MS.gene017099:CDS | 50.0% | |
| ! | CAGCTCAATTCCAGCGCTTT+TGG | - | chr5.1:72827103-72827122 | MS.gene017099:CDS | 50.0% |
| ! | CATTTGGTATCGGGCGACTT+AGG | - | chr5.1:72826689-72826708 | MS.gene017099:CDS | 50.0% |
| ! | CCTGAAGAAGTTGATCAGGG+AGG | + | chr5.1:72828718-72828737 | None:intergenic | 50.0% |
| ! | GTTCTGTTTGGTGGATGTCG+AGG | + | chr5.1:72829033-72829052 | None:intergenic | 50.0% |
| !! | CAAAAGCGCTGGAATTGAGC+TGG | + | chr5.1:72827105-72827124 | None:intergenic | 50.0% |
| !! | TGTTTCTGGAAGTGGAGCGT+GGG | - | chr5.1:72827462-72827481 | MS.gene017099:intron | 50.0% |
| GCACCCTCGCAAGCATTTAG+AGG | + | chr5.1:72827305-72827324 | None:intergenic | 55.0% | |
| GCCGAGATGGTCGACATGTA+TGG | + | chr5.1:72827149-72827168 | None:intergenic | 55.0% | |
| !! | AGCTAAGAAGAGCACCGACC+GGG | - | chr5.1:72828955-72828974 | MS.gene017099:intron | 55.0% |
| !! | CAGCTAAGAAGAGCACCGAC+CGG | - | chr5.1:72828954-72828973 | MS.gene017099:intron | 55.0% |
| !! | CTGTTTCTGGAAGTGGAGCG+TGG | - | chr5.1:72827461-72827480 | MS.gene017099:intron | 55.0% |
| !! | GAGCACCGACCGGGATAATG+AGG | - | chr5.1:72828964-72828983 | MS.gene017099:intron | 60.0% |
| TCTGGAAGTGGAGCGTGGGC+TGG | - | chr5.1:72827466-72827485 | MS.gene017099:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 72826091 | 72829312 | 72826091 | ID=MS.gene017099 |
| chr5.1 | mRNA | 72826091 | 72829312 | 72826091 | ID=MS.gene017099.t1;Parent=MS.gene017099 |
| chr5.1 | exon | 72829280 | 72829312 | 72829280 | ID=MS.gene017099.t1.exon1;Parent=MS.gene017099.t1 |
| chr5.1 | CDS | 72829280 | 72829312 | 72829280 | ID=cds.MS.gene017099.t1;Parent=MS.gene017099.t1 |
| chr5.1 | exon | 72829021 | 72829140 | 72829021 | ID=MS.gene017099.t1.exon2;Parent=MS.gene017099.t1 |
| chr5.1 | CDS | 72829021 | 72829140 | 72829021 | ID=cds.MS.gene017099.t1;Parent=MS.gene017099.t1 |
| chr5.1 | exon | 72828206 | 72828328 | 72828206 | ID=MS.gene017099.t1.exon3;Parent=MS.gene017099.t1 |
| chr5.1 | CDS | 72828206 | 72828328 | 72828206 | ID=cds.MS.gene017099.t1;Parent=MS.gene017099.t1 |
| chr5.1 | exon | 72827916 | 72827984 | 72827916 | ID=MS.gene017099.t1.exon4;Parent=MS.gene017099.t1 |
| chr5.1 | CDS | 72827916 | 72827984 | 72827916 | ID=cds.MS.gene017099.t1;Parent=MS.gene017099.t1 |
| chr5.1 | exon | 72827738 | 72827826 | 72827738 | ID=MS.gene017099.t1.exon5;Parent=MS.gene017099.t1 |
| chr5.1 | CDS | 72827738 | 72827826 | 72827738 | ID=cds.MS.gene017099.t1;Parent=MS.gene017099.t1 |
| chr5.1 | exon | 72827539 | 72827647 | 72827539 | ID=MS.gene017099.t1.exon6;Parent=MS.gene017099.t1 |
| chr5.1 | CDS | 72827539 | 72827647 | 72827539 | ID=cds.MS.gene017099.t1;Parent=MS.gene017099.t1 |
| chr5.1 | exon | 72827230 | 72827298 | 72827230 | ID=MS.gene017099.t1.exon7;Parent=MS.gene017099.t1 |
| chr5.1 | CDS | 72827230 | 72827298 | 72827230 | ID=cds.MS.gene017099.t1;Parent=MS.gene017099.t1 |
| chr5.1 | exon | 72827033 | 72827143 | 72827033 | ID=MS.gene017099.t1.exon8;Parent=MS.gene017099.t1 |
| chr5.1 | CDS | 72827033 | 72827143 | 72827033 | ID=cds.MS.gene017099.t1;Parent=MS.gene017099.t1 |
| chr5.1 | exon | 72826091 | 72826924 | 72826091 | ID=MS.gene017099.t1.exon9;Parent=MS.gene017099.t1 |
| chr5.1 | CDS | 72826091 | 72826924 | 72826091 | ID=cds.MS.gene017099.t1;Parent=MS.gene017099.t1 |
| Gene Sequence |
| Protein sequence |
