Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017100.t1 | XP_003617426.1 | 91.6 | 550 | 45 | 1 | 1 | 549 | 1 | 550 | 2.00E-277 | 964.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017100.t1 | Q9FPT1 | 61.8 | 217 | 79 | 2 | 2 | 215 | 562 | 777 | 2.3e-67 | 258.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017100.t1 | G7KD57 | 91.6 | 550 | 45 | 1 | 1 | 549 | 1 | 550 | 1.5e-277 | 964.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017100.t1 | MTR_5g091430 | 91.636 | 550 | 45 | 1 | 1 | 549 | 1 | 550 | 0.0 | 1016 |
| MS.gene017100.t1 | MTR_5g091450 | 63.636 | 605 | 158 | 7 | 4 | 549 | 191 | 792 | 0.0 | 701 |
| MS.gene017100.t1 | MTR_5g091410 | 59.165 | 551 | 192 | 6 | 1 | 549 | 30 | 549 | 0.0 | 592 |
| MS.gene017100.t1 | MTR_5g091180 | 64.122 | 524 | 162 | 6 | 2 | 522 | 202 | 702 | 0.0 | 587 |
| MS.gene017100.t1 | MTR_5g091530 | 59.722 | 288 | 92 | 3 | 4 | 289 | 119 | 384 | 8.06e-103 | 315 |
| MS.gene017100.t1 | MTR_5g091550 | 56.169 | 308 | 122 | 5 | 3 | 301 | 180 | 483 | 6.57e-102 | 316 |
| MS.gene017100.t1 | MTR_5g091550 | 56.169 | 308 | 122 | 5 | 3 | 301 | 175 | 478 | 7.18e-102 | 316 |
| MS.gene017100.t1 | MTR_5g086700 | 65.000 | 260 | 87 | 2 | 4 | 260 | 568 | 826 | 1.89e-99 | 325 |
| MS.gene017100.t1 | MTR_5g086700 | 65.000 | 260 | 87 | 2 | 4 | 260 | 568 | 826 | 1.91e-99 | 325 |
| MS.gene017100.t1 | MTR_3g079840 | 61.538 | 260 | 96 | 2 | 4 | 260 | 564 | 822 | 8.45e-95 | 312 |
| MS.gene017100.t1 | MTR_3g079840 | 61.538 | 260 | 96 | 2 | 4 | 260 | 563 | 821 | 8.60e-95 | 312 |
| MS.gene017100.t1 | MTR_1g041240 | 53.462 | 260 | 116 | 3 | 5 | 260 | 565 | 823 | 5.39e-76 | 261 |
| MS.gene017100.t1 | MTR_1g041240 | 53.462 | 260 | 116 | 3 | 5 | 260 | 566 | 824 | 6.55e-76 | 260 |
| MS.gene017100.t1 | MTR_1g041240 | 53.462 | 260 | 116 | 3 | 5 | 260 | 564 | 822 | 6.85e-76 | 260 |
| MS.gene017100.t1 | MTR_5g091460 | 79.545 | 44 | 9 | 0 | 1 | 44 | 1 | 44 | 1.32e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017100.t1 | AT5G06600 | 61.751 | 217 | 79 | 2 | 2 | 215 | 562 | 777 | 5.02e-77 | 262 |
| MS.gene017100.t1 | AT5G06600 | 61.751 | 217 | 79 | 2 | 2 | 215 | 561 | 776 | 1.68e-76 | 262 |
| MS.gene017100.t1 | AT5G06600 | 61.751 | 217 | 79 | 2 | 2 | 215 | 562 | 777 | 1.70e-76 | 262 |
| MS.gene017100.t1 | AT3G11910 | 55.274 | 237 | 102 | 2 | 2 | 235 | 560 | 795 | 1.37e-74 | 257 |
| MS.gene017100.t1 | AT3G11910 | 55.274 | 237 | 102 | 2 | 2 | 235 | 560 | 795 | 1.37e-74 | 257 |
| MS.gene017100.t1 | AT3G11910 | 55.274 | 237 | 102 | 2 | 2 | 235 | 559 | 794 | 1.37e-74 | 257 |
| MS.gene017100.t1 | AT3G11910 | 55.274 | 237 | 102 | 2 | 2 | 235 | 559 | 794 | 1.37e-74 | 257 |
Find 84 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCAAGGTTAAATAAAT+TGG | 0.166835 | 5.1:-72835896 | MS.gene017100:CDS |
| TTCCAATGATTCTTCATCTT+TGG | 0.180925 | 5.1:+72835118 | None:intergenic |
| TCTTCAATGCTTCATTATTT+TGG | 0.190214 | 5.1:+72834568 | None:intergenic |
| TGACGAATTAAAATTGTTTC+TGG | 0.191505 | 5.1:-72836252 | MS.gene017100:CDS |
| TCCCATTGCACCACTCTATA+TGG | 0.201548 | 5.1:-72836115 | MS.gene017100:CDS |
| CTTCCAAGAGCAACTTCTTA+TGG | 0.228201 | 5.1:-72834826 | MS.gene017100:CDS |
| TAGCTCAATTCCAGCGCTTT+TGG | 0.241563 | 5.1:-72836774 | MS.gene017100:CDS |
| CCACGAATGCAGTTAGAAAA+TGG | 0.246637 | 5.1:-72835382 | MS.gene017100:intron |
| AATGTTAATTCCTTCTTAAC+TGG | 0.258356 | 5.1:+72835492 | None:intergenic |
| ACAAGGCGACCGGGCTAAAA+TGG | 0.260074 | 5.1:-72834436 | MS.gene017100:CDS |
| GAGGCATTACCCTCATTATT+TGG | 0.263040 | 5.1:+72834256 | None:intergenic |
| TGATACCTTGAAAACGTTAA+AGG | 0.272288 | 5.1:+72837230 | None:intergenic |
| AGTAAGTACATTAATCAAAA+TGG | 0.294834 | 5.1:+72834234 | None:intergenic |
| GAAGATCTTGCAGAACAAAT+TGG | 0.323182 | 5.1:-72837321 | MS.gene017100:CDS |
| ATTAAAATTGTTTCTGGAAG+TGG | 0.348069 | 5.1:-72836246 | MS.gene017100:CDS |
| AACATGGTTGCTATAGAGTT+TGG | 0.361077 | 5.1:-72836802 | MS.gene017100:CDS |
| CCAATTCAGTTTGTGCCTCC+AGG | 0.376254 | 5.1:+72834298 | None:intergenic |
| GCCAACACTTTAAAATTTGT+CGG | 0.379592 | 5.1:-72834987 | MS.gene017100:CDS |
| CCTGGAGGCACAAACTGAAT+TGG | 0.380178 | 5.1:-72834298 | MS.gene017100:CDS |
| ATGTGTGTCAAAGGCCGATA+TGG | 0.385971 | 5.1:+72836718 | None:intergenic |
| ACTGGCAAACGCATGACATT+TGG | 0.386148 | 5.1:+72835510 | None:intergenic |
| ATCCAAAGATGAAGAATCAT+TGG | 0.396304 | 5.1:-72835120 | MS.gene017100:CDS |
| CAAGAGAGTTGCGTTGTGTT+TGG | 0.402884 | 5.1:+72834499 | None:intergenic |
| AGAAGTTGCTCTTGGAAGTT+GGG | 0.405096 | 5.1:+72834831 | None:intergenic |
| TCACTTGTACACTATGATAA+AGG | 0.412677 | 5.1:-72837471 | MS.gene017100:intron |
| GGATAAGCCATCAGAAATCT+TGG | 0.414878 | 5.1:-72835914 | MS.gene017100:CDS |
| ATCTTTGGATTCTATATCTG+AGG | 0.416621 | 5.1:+72835133 | None:intergenic |
| TGCTCTTGGAAGTTGGGATC+CGG | 0.418782 | 5.1:+72834837 | None:intergenic |
| AAAAGTTCAATCTCTTCATC+AGG | 0.421693 | 5.1:+72835862 | None:intergenic |
| ACTGTGTTGAAACTAACTTT+AGG | 0.426782 | 5.1:+72834744 | None:intergenic |
| AGCATGAAGGCACATCAAAA+AGG | 0.432161 | 5.1:+72835305 | None:intergenic |
| ATTCCATAAGAAGTTGCTCT+TGG | 0.436863 | 5.1:+72834823 | None:intergenic |
| AATGAAAGCTATTGATTGCC+AGG | 0.443087 | 5.1:-72835278 | MS.gene017100:intron |
| AAGAAGTTGCTCTTGGAAGT+TGG | 0.443347 | 5.1:+72834830 | None:intergenic |
| CCCTTTGGTGGCAGTTATGT+TGG | 0.447155 | 5.1:-72835958 | MS.gene017100:intron |
| CATGCGTTTGCCAGTTAAGA+AGG | 0.456247 | 5.1:-72835502 | MS.gene017100:CDS |
| AGCAACTTCTTATGGAATTG+AGG | 0.457005 | 5.1:-72834818 | MS.gene017100:CDS |
| GCAACTTCTTATGGAATTGA+GGG | 0.458233 | 5.1:-72834817 | MS.gene017100:CDS |
| CCCATTGCACCACTCTATAT+GGG | 0.458553 | 5.1:-72836114 | MS.gene017100:CDS |
| CCCATATAGAGTGGTGCAAT+GGG | 0.464635 | 5.1:+72836114 | None:intergenic |
| GCAAGGTTAAATAAATTGGC+TGG | 0.470203 | 5.1:-72835892 | MS.gene017100:CDS |
| CAACACTGACTTGTTCTAGT+TGG | 0.488324 | 5.1:+72834679 | None:intergenic |
| CATTACCCTCATTATTTGGT+AGG | 0.488902 | 5.1:+72834260 | None:intergenic |
| TTGGTGGCAGTTATGTTGGA+AGG | 0.494286 | 5.1:-72835954 | MS.gene017100:intron |
| TCTATATCTGAGGGCCGAAA+AGG | 0.497785 | 5.1:+72835143 | None:intergenic |
| GCTGGTACCTTTAGCATGAG+TGG | 0.499474 | 5.1:+72835013 | None:intergenic |
| GAGAGTTGCGTTGTGTTTGG+TGG | 0.502859 | 5.1:+72834502 | None:intergenic |
| AAGGCTTATTGTGAACTGTA+AGG | 0.503460 | 5.1:-72835935 | MS.gene017100:CDS |
| AAGCTTATGCTATTGATACT+AGG | 0.505022 | 5.1:-72835339 | MS.gene017100:CDS |
| AACCTTGCCAAGATTTCTGA+TGG | 0.506298 | 5.1:+72835907 | None:intergenic |
| TGAAGCTCAACAGTCAAAAG+TGG | 0.513365 | 5.1:-72835045 | MS.gene017100:CDS |
| TCCCATATAGAGTGGTGCAA+TGG | 0.516818 | 5.1:+72836113 | None:intergenic |
| GCTTCCTCGATGTGTGTCAA+AGG | 0.520515 | 5.1:+72836709 | None:intergenic |
| AAAATATTATAGCTGAAGAA+AGG | 0.525519 | 5.1:-72835085 | MS.gene017100:CDS |
| AAATAATGAAGCATTGAAGA+AGG | 0.539170 | 5.1:-72834565 | MS.gene017100:CDS |
| AGAAGGCCTACCAAATAATG+AGG | 0.539514 | 5.1:-72834266 | MS.gene017100:CDS |
| AAGTGTTGAAGATAAAATCC+TGG | 0.540552 | 5.1:-72834316 | MS.gene017100:CDS |
| TCTTTGGATTCTATATCTGA+GGG | 0.540937 | 5.1:+72835134 | None:intergenic |
| ACTTGATTTGATCATCAGCT+AGG | 0.545646 | 5.1:+72834343 | None:intergenic |
| AGTTAGTTTCAACACAGTCA+TGG | 0.546034 | 5.1:-72834739 | MS.gene017100:CDS |
| ATAGAGACCACTCATGCTAA+AGG | 0.550479 | 5.1:-72835020 | MS.gene017100:CDS |
| ATGATAGACGAGGATGTCAT+TGG | 0.551670 | 5.1:-72834939 | MS.gene017100:CDS |
| ATCGACAAAGTGTTATCAGA+AGG | 0.564630 | 5.1:-72834912 | MS.gene017100:CDS |
| ATCCTGAAAAGAAGAAGCTA+AGG | 0.565994 | 5.1:-72836056 | MS.gene017100:intron |
| TTTGATCATCAGCTAGGCGA+TGG | 0.567721 | 5.1:+72834349 | None:intergenic |
| ACCTTGTCAACAACATTGCG+AGG | 0.587538 | 5.1:-72834650 | MS.gene017100:CDS |
| ATTAACATTTCAAGAAAGTG+AGG | 0.591223 | 5.1:-72835478 | MS.gene017100:intron |
| ATATCTGAGGGCCGAAAAGG+AGG | 0.595378 | 5.1:+72835146 | None:intergenic |
| TGCACCACTCTATATGGGAG+AGG | 0.595424 | 5.1:-72836109 | MS.gene017100:CDS |
| TCTGGAAGTGGAGCATGAGC+TGG | 0.601431 | 5.1:-72836234 | MS.gene017100:intron |
| TCCTCGCAATGTTGTTGACA+AGG | 0.602106 | 5.1:+72834649 | None:intergenic |
| TGAATTGGAAAGTCATGAGA+AGG | 0.602939 | 5.1:-72834283 | MS.gene017100:CDS |
| TAGTAGACTTTGACAAAGTG+AGG | 0.605788 | 5.1:-72837278 | MS.gene017100:CDS |
| ACGGTACATATCGACCATAT+CGG | 0.622651 | 5.1:-72836732 | MS.gene017100:CDS |
| TCGACAAAGTGTTATCAGAA+GGG | 0.625778 | 5.1:-72834911 | MS.gene017100:CDS |
| AAGTACATTAATCAAAATGG+AGG | 0.631561 | 5.1:+72834237 | None:intergenic |
| AGCCATCAGAAATCTTGGCA+AGG | 0.646518 | 5.1:-72835909 | MS.gene017100:CDS |
| GAAGGCCTACCAAATAATGA+GGG | 0.655305 | 5.1:-72834265 | MS.gene017100:CDS |
| TCATCCTCTCCCATATAGAG+TGG | 0.655935 | 5.1:+72836105 | None:intergenic |
| AATTGATGCTATGATAGACG+AGG | 0.695057 | 5.1:-72834949 | MS.gene017100:CDS |
| GTTGTGTTTGGTGGTCTGTG+AGG | 0.712373 | 5.1:+72834511 | None:intergenic |
| TGTTGAAGATAAAATCCTGG+AGG | 0.717731 | 5.1:-72834313 | MS.gene017100:CDS |
| TGAATTGAAAGAGCTTTACG+AGG | 0.730810 | 5.1:-72836276 | MS.gene017100:CDS |
| TCGGCCTTTGACACACATCG+AGG | 0.738247 | 5.1:-72836713 | MS.gene017100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAATCAATATAAAAA+AGG | + | chr5.1:72835304-72835323 | None:intergenic | 10.0% |
| !! | AAAACAATCAATATAAAAAA+GGG | + | chr5.1:72835303-72835322 | None:intergenic | 10.0% |
| !!! | TTTTTTATATTGATTGTTTT+TGG | - | chr5.1:72835303-72835322 | MS.gene017100:CDS | 10.0% |
| !! | AAAATATTATAGCTGAAGAA+AGG | - | chr5.1:72836645-72836664 | MS.gene017100:intron | 20.0% |
| !! | AAAATGAATCTTGTTAATTG+AGG | - | chr5.1:72834549-72834568 | MS.gene017100:CDS | 20.0% |
| !! | ATGAAATTAGAGTATGTAAT+TGG | + | chr5.1:72834655-72834674 | None:intergenic | 20.0% |
| !! | ATTAAGGGAAAAAAAACTAT+GGG | + | chr5.1:72835331-72835350 | None:intergenic | 20.0% |
| !! | GACAAACTTCATTATTATAT+AGG | - | chr5.1:72835585-72835604 | MS.gene017100:intron | 20.0% |
| !! | GATAACATATAATACTTCTT+AGG | - | chr5.1:72834375-72834394 | MS.gene017100:CDS | 20.0% |
| !! | TAAAATAATTGTTTCCTATG+AGG | + | chr5.1:72834769-72834788 | None:intergenic | 20.0% |
| !! | TAATAATGAAGTTTGTCAAA+AGG | + | chr5.1:72835582-72835601 | None:intergenic | 20.0% |
| !! | TCAACATTAAACATAAATGA+GGG | + | chr5.1:72835189-72835208 | None:intergenic | 20.0% |
| !! | TGAAATTAGAGTATGTAATT+GGG | + | chr5.1:72834654-72834673 | None:intergenic | 20.0% |
| !! | TTCAACATTAAACATAAATG+AGG | + | chr5.1:72835190-72835209 | None:intergenic | 20.0% |
| !!! | AATTTCATATTTTCTTGCAA+CGG | - | chr5.1:72834667-72834686 | MS.gene017100:CDS | 20.0% |
| !!! | GTCAATTTTTCATATGTATT+TGG | + | chr5.1:72834624-72834643 | None:intergenic | 20.0% |
| !!! | TTGGTTGAAAATTTTAAACA+AGG | - | chr5.1:72836956-72836975 | MS.gene017100:intron | 20.0% |
| !!! | TTTGATTTTAACATATGTTG+AGG | - | chr5.1:72835714-72835733 | MS.gene017100:intron | 20.0% |
| ! | AAAAATCACAATGCTTTAGT+TGG | - | chr5.1:72834807-72834826 | MS.gene017100:CDS | 25.0% |
| ! | AACATATAATACTTCTTAGG+TGG | - | chr5.1:72834378-72834397 | MS.gene017100:CDS | 25.0% |
| ! | AATACATATGATGTCAACTA+TGG | + | chr5.1:72835751-72835770 | None:intergenic | 25.0% |
| ! | AATCTTAATAACGAAGCATA+TGG | + | chr5.1:72835986-72836005 | None:intergenic | 25.0% |
| ! | AATGTTAATTCCTTCTTAAC+TGG | + | chr5.1:72836241-72836260 | None:intergenic | 25.0% |
| ! | AGAAACAAGATTAGAATAAC+TGG | + | chr5.1:72836525-72836544 | None:intergenic | 25.0% |
| ! | ATAAAATATGAAGCTTGAAG+GGG | + | chr5.1:72835105-72835124 | None:intergenic | 25.0% |
| ! | ATATGCTTCGTTATTAAGAT+TGG | - | chr5.1:72835985-72836004 | MS.gene017100:intron | 25.0% |
| ! | ATATGTATTTGGCACTAATT+TGG | + | chr5.1:72834613-72834632 | None:intergenic | 25.0% |
| ! | ATTAACATTTCAAGAAAGTG+AGG | - | chr5.1:72836252-72836271 | MS.gene017100:CDS | 25.0% |
| ! | CAACATTAAACATAAATGAG+GGG | + | chr5.1:72835188-72835207 | None:intergenic | 25.0% |
| ! | CACAAACAAAACAAAATTCT+AGG | + | chr5.1:72834302-72834321 | None:intergenic | 25.0% |
| ! | CATAAAATATGAAGCTTGAA+GGG | + | chr5.1:72835106-72835125 | None:intergenic | 25.0% |
| ! | CATTAAGGGAAAAAAAACTA+TGG | + | chr5.1:72835332-72835351 | None:intergenic | 25.0% |
| ! | GAAATTAGAGTATGTAATTG+GGG | + | chr5.1:72834653-72834672 | None:intergenic | 25.0% |
| ! | TATGCTTCGTTATTAAGATT+GGG | - | chr5.1:72835986-72836005 | MS.gene017100:intron | 25.0% |
| ! | TCATAAAATATGAAGCTTGA+AGG | + | chr5.1:72835107-72835126 | None:intergenic | 25.0% |
| ! | TGACGAATTAAAATTGTTTC+TGG | - | chr5.1:72835478-72835497 | MS.gene017100:intron | 25.0% |
| ! | TTAACATATGTTGAGGTAAA+AGG | - | chr5.1:72835721-72835740 | MS.gene017100:intron | 25.0% |
| !! | GTTATTCTAATCTTGTTTCT+AGG | - | chr5.1:72836525-72836544 | MS.gene017100:intron | 25.0% |
| !! | TCTTCAATGCTTCATTATTT+TGG | + | chr5.1:72837165-72837184 | None:intergenic | 25.0% |
| !!! | AAATAATGAAGCATTGAAGA+AGG | - | chr5.1:72837165-72837184 | MS.gene017100:intron | 25.0% |
| !!! | ATTAAAATTGTTTCTGGAAG+TGG | - | chr5.1:72835484-72835503 | MS.gene017100:CDS | 25.0% |
| !!! | TTTTATGACTTTTTCATCTC+TGG | - | chr5.1:72835119-72835138 | MS.gene017100:CDS | 25.0% |
| AAAAGTTCAATCTCTTCATC+AGG | + | chr5.1:72835871-72835890 | None:intergenic | 30.0% | |
| AAACCAATGAAACAGTAACT+TGG | + | chr5.1:72836310-72836329 | None:intergenic | 30.0% | |
| AACCTCAAAAAGAAAATACC+TGG | + | chr5.1:72836473-72836492 | None:intergenic | 30.0% | |
| AAGCTTATGCTATTGATACT+AGG | - | chr5.1:72836391-72836410 | MS.gene017100:intron | 30.0% | |
| AATTAACCAGCATGTCTTAA+AGG | + | chr5.1:72834703-72834722 | None:intergenic | 30.0% | |
| ACATCATATGTATTTCCCTT+TGG | - | chr5.1:72835757-72835776 | MS.gene017100:intron | 30.0% | |
| ACTGTGTTGAAACTAACTTT+AGG | + | chr5.1:72836989-72837008 | None:intergenic | 30.0% | |
| ACTTCACATCATAGTGAAAT+TGG | + | chr5.1:72835401-72835420 | None:intergenic | 30.0% | |
| ATCAAGCTGATACTTAATTG+TGG | - | chr5.1:72835228-72835247 | MS.gene017100:intron | 30.0% | |
| ATCATAGTGAAATTGGTATG+TGG | + | chr5.1:72835394-72835413 | None:intergenic | 30.0% | |
| ATCCAAAGATGAAGAATCAT+TGG | - | chr5.1:72836610-72836629 | MS.gene017100:intron | 30.0% | |
| ATCTTTGGATTCTATATCTG+AGG | + | chr5.1:72836600-72836619 | None:intergenic | 30.0% | |
| ATGACCAACAAGAACAAAAA+GGG | - | chr5.1:72836108-72836127 | MS.gene017100:CDS | 30.0% | |
| CTTGGCAAGGTTAAATAAAT+TGG | - | chr5.1:72835834-72835853 | MS.gene017100:intron | 30.0% | |
| GTGATGTGATATATAGAACA+TGG | - | chr5.1:72834912-72834931 | MS.gene017100:CDS | 30.0% | |
| TAAAATATGAAGCTTGAAGG+GGG | + | chr5.1:72835104-72835123 | None:intergenic | 30.0% | |
| TATGACCAACAAGAACAAAA+AGG | - | chr5.1:72836107-72836126 | MS.gene017100:CDS | 30.0% | |
| TCAAGCTGATACTTAATTGT+GGG | - | chr5.1:72835229-72835248 | MS.gene017100:intron | 30.0% | |
| TCACTTGTACACTATGATAA+AGG | - | chr5.1:72834259-72834278 | MS.gene017100:CDS | 30.0% | |
| TCAGCAGAAAACTAAAAAGT+CGG | + | chr5.1:72835913-72835932 | None:intergenic | 30.0% | |
| TCTTTGGATTCTATATCTGA+GGG | + | chr5.1:72836599-72836618 | None:intergenic | 30.0% | |
| TGATACCTTGAAAACGTTAA+AGG | + | chr5.1:72834503-72834522 | None:intergenic | 30.0% | |
| TGTTTAGTAAATATGCTTGC+TGG | - | chr5.1:72836030-72836049 | MS.gene017100:intron | 30.0% | |
| TTCCAATGATTCTTCATCTT+TGG | + | chr5.1:72836615-72836634 | None:intergenic | 30.0% | |
| TTTATTTCCTGCACAACAAT+AGG | + | chr5.1:72836193-72836212 | None:intergenic | 30.0% | |
| ! | ATATGGAAAAAGCGTGTAAA+CGG | - | chr5.1:72834979-72834998 | MS.gene017100:CDS | 30.0% |
| ! | GACAGAATGTTGAGATTTTA+AGG | + | chr5.1:72836855-72836874 | None:intergenic | 30.0% |
| ! | TCTCTGAAAATTTATCATGC+TGG | - | chr5.1:72836082-72836101 | MS.gene017100:CDS | 30.0% |
| ! | TCTTGTGGTTTTTATGCTTT+TGG | - | chr5.1:72834856-72834875 | MS.gene017100:CDS | 30.0% |
| ! | TGAAGAGATTGAACTTTTTG+AGG | - | chr5.1:72835873-72835892 | MS.gene017100:CDS | 30.0% |
| !! | AAGTGTTGAAGATAAAATCC+TGG | - | chr5.1:72837414-72837433 | MS.gene017100:intron | 30.0% |
| !! | GCCAACACTTTAAAATTTGT+CGG | - | chr5.1:72836743-72836762 | MS.gene017100:CDS | 30.0% |
| !! | TATCGCTTTTAAAGAAGACT+TGG | - | chr5.1:72836937-72836956 | MS.gene017100:intron | 30.0% |
| !! | TATTTTAGATGCATCCTCAT+AGG | - | chr5.1:72834752-72834771 | MS.gene017100:CDS | 30.0% |
| !!! | TAACTGGTTAGCTTTCATTT+TGG | + | chr5.1:72836509-72836528 | None:intergenic | 30.0% |
| AACATGGTTGCTATAGAGTT+TGG | - | chr5.1:72834928-72834947 | MS.gene017100:CDS | 35.0% | |
| AAGGCTTATTGTGAACTGTA+AGG | - | chr5.1:72835795-72835814 | MS.gene017100:intron | 35.0% | |
| AATTCTTCCTATTGTTGTGC+AGG | - | chr5.1:72836183-72836202 | MS.gene017100:intron | 35.0% | |
| AATTGATGCTATGATAGACG+AGG | - | chr5.1:72836781-72836800 | MS.gene017100:CDS | 35.0% | |
| ACATATGTTGAGGTAAAAGG+TGG | - | chr5.1:72835724-72835743 | MS.gene017100:intron | 35.0% | |
| ACCGAAGATTCCATTAGAAA+AGG | + | chr5.1:72836134-72836153 | None:intergenic | 35.0% | |
| AGCAACTTCTTATGGAATTG+AGG | - | chr5.1:72836912-72836931 | MS.gene017100:intron | 35.0% | |
| ATATGGTTTCTGAACATGCA+AGG | + | chr5.1:72835969-72835988 | None:intergenic | 35.0% | |
| ATCCTGAAAAGAAGAAGCTA+AGG | - | chr5.1:72835674-72835693 | MS.gene017100:intron | 35.0% | |
| ATTCCATAAGAAGTTGCTCT+TGG | + | chr5.1:72836910-72836929 | None:intergenic | 35.0% | |
| CATACGTCAAATGAATCTTG+TGG | - | chr5.1:72834841-72834860 | MS.gene017100:CDS | 35.0% | |
| CATTACCCTCATTATTTGGT+AGG | + | chr5.1:72837473-72837492 | None:intergenic | 35.0% | |
| GAAGATCTTGCAGAACAAAT+TGG | - | chr5.1:72834409-72834428 | MS.gene017100:CDS | 35.0% | |
| GCAACTTCTTATGGAATTGA+GGG | - | chr5.1:72836913-72836932 | MS.gene017100:intron | 35.0% | |
| GCAAGGTTAAATAAATTGGC+TGG | - | chr5.1:72835838-72835857 | MS.gene017100:intron | 35.0% | |
| TAGTAGACTTTGACAAAGTG+AGG | - | chr5.1:72834452-72834471 | MS.gene017100:CDS | 35.0% | |
| TCATATGTATTTCCCTTTGG+TGG | - | chr5.1:72835760-72835779 | MS.gene017100:intron | 35.0% | |
| TGAATTGAAAGAGCTTTACG+AGG | - | chr5.1:72835454-72835473 | MS.gene017100:intron | 35.0% | |
| TGAATTGGAAAGTCATGAGA+AGG | - | chr5.1:72837447-72837466 | MS.gene017100:intron | 35.0% | |
| TGTTGAAGATAAAATCCTGG+AGG | - | chr5.1:72837417-72837436 | MS.gene017100:intron | 35.0% | |
| TTAGTAGTTACATACCCAGT+TGG | - | chr5.1:72836278-72836297 | MS.gene017100:CDS | 35.0% | |
| TTTCTTGCAACGGAATTCAA+TGG | - | chr5.1:72834677-72834696 | MS.gene017100:CDS | 35.0% | |
| ! | AATGAAAGCTATTGATTGCC+AGG | - | chr5.1:72836452-72836471 | MS.gene017100:intron | 35.0% |
| ! | ACAAAAAGGGCCTTTTCTAA+TGG | - | chr5.1:72836121-72836140 | MS.gene017100:CDS | 35.0% |
| ! | ACTTGATTTGATCATCAGCT+AGG | + | chr5.1:72837390-72837409 | None:intergenic | 35.0% |
| ! | AGTTAGTTTCAACACAGTCA+TGG | - | chr5.1:72836991-72837010 | MS.gene017100:intron | 35.0% |
| ! | ATCGACAAAGTGTTATCAGA+AGG | - | chr5.1:72836818-72836837 | MS.gene017100:intron | 35.0% |
| ! | GACATCCTTTAACGTTTTCA+AGG | - | chr5.1:72834495-72834514 | MS.gene017100:CDS | 35.0% |
| ! | GCCTTTTCTAATGGAATCTT+CGG | - | chr5.1:72836130-72836149 | MS.gene017100:intron | 35.0% |
| ! | TACCTTAGCTTCTTCTTTTC+AGG | + | chr5.1:72835679-72835698 | None:intergenic | 35.0% |
| ! | TCGACAAAGTGTTATCAGAA+GGG | - | chr5.1:72836819-72836838 | MS.gene017100:intron | 35.0% |
| ! | TGCCAGGTATTTTCTTTTTG+AGG | - | chr5.1:72836468-72836487 | MS.gene017100:intron | 35.0% |
| ! | TTTTCCCTTAATGCTTGTGA+GGG | - | chr5.1:72835339-72835358 | MS.gene017100:CDS | 35.0% |
| ! | TTTTTCCCTTAATGCTTGTG+AGG | - | chr5.1:72835338-72835357 | MS.gene017100:CDS | 35.0% |
| !! | GCTTTCATTTTCAAGCATGA+AGG | + | chr5.1:72836441-72836460 | None:intergenic | 35.0% |
| !!! | GAGATTGAACTTTTTGAGGT+TGG | - | chr5.1:72835877-72835896 | MS.gene017100:CDS | 35.0% |
| !!! | GCCGACAAATTTTAAAGTGT+TGG | + | chr5.1:72836747-72836766 | None:intergenic | 35.0% |
| !!! | TTTTAAAGTGTTGGCTTTGC+TGG | + | chr5.1:72836738-72836757 | None:intergenic | 35.0% |
| AACCTTGCCAAGATTTCTGA+TGG | + | chr5.1:72835826-72835845 | None:intergenic | 40.0% | |
| AAGAAGTTGCTCTTGGAAGT+TGG | + | chr5.1:72836903-72836922 | None:intergenic | 40.0% | |
| AAGATTGGGTCAAGCAATCA+TGG | - | chr5.1:72836000-72836019 | MS.gene017100:intron | 40.0% | |
| ACGCCAAGTTACTGTTTCAT+TGG | - | chr5.1:72836304-72836323 | MS.gene017100:intron | 40.0% | |
| ACGGTACATATCGACCATAT+CGG | - | chr5.1:72834998-72835017 | MS.gene017100:CDS | 40.0% | |
| AGAAGGCCTACCAAATAATG+AGG | - | chr5.1:72837464-72837483 | MS.gene017100:intron | 40.0% | |
| AGAAGTTGCTCTTGGAAGTT+GGG | + | chr5.1:72836902-72836921 | None:intergenic | 40.0% | |
| ATAAAGCTCCCACATATGCA+AGG | + | chr5.1:72835268-72835287 | None:intergenic | 40.0% | |
| ATAGAGACCACTCATGCTAA+AGG | - | chr5.1:72836710-72836729 | MS.gene017100:CDS | 40.0% | |
| ATGATAGACGAGGATGTCAT+TGG | - | chr5.1:72836791-72836810 | MS.gene017100:CDS | 40.0% | |
| CAATATAAAAAAGGGCAGCC+CGG | + | chr5.1:72835295-72835314 | None:intergenic | 40.0% | |
| CCAAAAACAAGTCTTGAAGC+CGG | - | chr5.1:72836874-72836893 | MS.gene017100:intron | 40.0% | |
| CCACGAATGCAGTTAGAAAA+TGG | - | chr5.1:72836348-72836367 | MS.gene017100:intron | 40.0% | |
| CTCATTCTGATTCCAATTGC+AGG | - | chr5.1:72835427-72835446 | MS.gene017100:intron | 40.0% | |
| CTTCCAAGAGCAACTTCTTA+TGG | - | chr5.1:72836904-72836923 | MS.gene017100:intron | 40.0% | |
| GAAGGCCTACCAAATAATGA+GGG | - | chr5.1:72837465-72837484 | MS.gene017100:intron | 40.0% | |
| GCCAAGCTTGAAAAACTACA+AGG | - | chr5.1:72837277-72837296 | MS.gene017100:CDS | 40.0% | |
| GGATAAGCCATCAGAAATCT+TGG | - | chr5.1:72835816-72835835 | MS.gene017100:intron | 40.0% | |
| TCAATTCACCTACCTGCAAT+TGG | + | chr5.1:72835442-72835461 | None:intergenic | 40.0% | |
| TGAAGCTCAACAGTCAAAAG+TGG | - | chr5.1:72836685-72836704 | MS.gene017100:intron | 40.0% | |
| TTCTGATTCCAATTGCAGGT+AGG | - | chr5.1:72835431-72835450 | MS.gene017100:intron | 40.0% | |
| TTGAAAAACTACAAGGCGAC+CGG | - | chr5.1:72837284-72837303 | MS.gene017100:CDS | 40.0% | |
| ! | AAGGCCCTTTTTGTTCTTGT+TGG | + | chr5.1:72836115-72836134 | None:intergenic | 40.0% |
| ! | AATTCCAGCGCTTTTGGATA+TGG | - | chr5.1:72834962-72834981 | MS.gene017100:CDS | 40.0% |
| ! | AGCATGAAGGCACATCAAAA+AGG | + | chr5.1:72836428-72836447 | None:intergenic | 40.0% |
| ! | ATATGCTTGCTGGTGATGAA+TGG | - | chr5.1:72836040-72836059 | MS.gene017100:intron | 40.0% |
| ! | ATGAAGGCACATCAAAAAGG+TGG | + | chr5.1:72836425-72836444 | None:intergenic | 40.0% |
| ! | ATGTGGGAGCTTTATGAAAC+CGG | - | chr5.1:72835273-72835292 | MS.gene017100:intron | 40.0% |
| ! | CCATTTTCTAACTGCATTCG+TGG | + | chr5.1:72836351-72836370 | None:intergenic | 40.0% |
| ! | GAGGCATTACCCTCATTATT+TGG | + | chr5.1:72837477-72837496 | None:intergenic | 40.0% |
| !! | CAACACTGACTTGTTCTAGT+TGG | + | chr5.1:72837054-72837073 | None:intergenic | 40.0% |
| !! | CGAATGTTGTTTCCTTGTTC+AGG | - | chr5.1:72836559-72836578 | MS.gene017100:intron | 40.0% |
| !! | CTTTTTCATCTCTGGCTGTT+GGG | - | chr5.1:72835127-72835146 | MS.gene017100:CDS | 40.0% |
| !! | TTGTTCAGGTTCCTCCTTTT+CGG | - | chr5.1:72836573-72836592 | MS.gene017100:intron | 40.0% |
| !! | TTTTCCATATCCAAAAGCGC+TGG | + | chr5.1:72834969-72834988 | None:intergenic | 40.0% |
| !!! | ACTTTTTCATCTCTGGCTGT+TGG | - | chr5.1:72835126-72835145 | MS.gene017100:CDS | 40.0% |
| !!! | GCCTTGTAGTTTTTCAAGCT+TGG | + | chr5.1:72837281-72837300 | None:intergenic | 40.0% |
| !!! | GTTGGGTTTTAGGCAAATGT+TGG | - | chr5.1:72835144-72835163 | MS.gene017100:CDS | 40.0% |
| AAGCACCCTCACAAGCATTA+AGG | + | chr5.1:72835347-72835366 | None:intergenic | 45.0% | |
| ACCTTGTCAACAACATTGCG+AGG | - | chr5.1:72837080-72837099 | MS.gene017100:intron | 45.0% | |
| ACTGGCAAACGCATGACATT+TGG | + | chr5.1:72836223-72836242 | None:intergenic | 45.0% | |
| AGCACCCTCACAAGCATTAA+GGG | + | chr5.1:72835346-72835365 | None:intergenic | 45.0% | |
| AGCCATCAGAAATCTTGGCA+AGG | - | chr5.1:72835821-72835840 | MS.gene017100:intron | 45.0% | |
| ATGTGTGTCAAAGGCCGATA+TGG | + | chr5.1:72835015-72835034 | None:intergenic | 45.0% | |
| CAAGAGAGTTGCGTTGTGTT+TGG | + | chr5.1:72837234-72837253 | None:intergenic | 45.0% | |
| CATGCGTTTGCCAGTTAAGA+AGG | - | chr5.1:72836228-72836247 | MS.gene017100:intron | 45.0% | |
| CCAACATAACTGCCACCAAA+GGG | + | chr5.1:72835775-72835794 | None:intergenic | 45.0% | |
| CCCATATAGAGTGGTGCAAT+GGG | + | chr5.1:72835619-72835638 | None:intergenic | 45.0% | |
| CCCATTGCACCACTCTATAT+GGG | - | chr5.1:72835616-72835635 | MS.gene017100:intron | 45.0% | |
| GAAAAGGAGGAACCTGAACA+AGG | + | chr5.1:72836574-72836593 | None:intergenic | 45.0% | |
| TCATCCTCTCCCATATAGAG+TGG | + | chr5.1:72835628-72835647 | None:intergenic | 45.0% | |
| TCCAACATAACTGCCACCAA+AGG | + | chr5.1:72835776-72835795 | None:intergenic | 45.0% | |
| TCCCATATAGAGTGGTGCAA+TGG | + | chr5.1:72835620-72835639 | None:intergenic | 45.0% | |
| TCCCATTGCACCACTCTATA+TGG | - | chr5.1:72835615-72835634 | MS.gene017100:intron | 45.0% | |
| TCCTCGCAATGTTGTTGACA+AGG | + | chr5.1:72837084-72837103 | None:intergenic | 45.0% | |
| TCTATATCTGAGGGCCGAAA+AGG | + | chr5.1:72836590-72836609 | None:intergenic | 45.0% | |
| TGAAAAACTACAAGGCGACC+GGG | - | chr5.1:72837285-72837304 | MS.gene017100:CDS | 45.0% | |
| TTTGATCATCAGCTAGGCGA+TGG | + | chr5.1:72837384-72837403 | None:intergenic | 45.0% | |
| ! | ATCTCTGGCTGTTGGGTTTT+AGG | - | chr5.1:72835134-72835153 | MS.gene017100:CDS | 45.0% |
| ! | TAGCTCAATTCCAGCGCTTT+TGG | - | chr5.1:72834956-72834975 | MS.gene017100:CDS | 45.0% |
| ! | TGTGGGAGCTTTATGAAACC+GGG | - | chr5.1:72835274-72835293 | MS.gene017100:intron | 45.0% |
| ! | TTGGTGGCAGTTATGTTGGA+AGG | - | chr5.1:72835776-72835795 | MS.gene017100:intron | 45.0% |
| !! | CAATGGCCTTTAAGACATGC+TGG | - | chr5.1:72834694-72834713 | MS.gene017100:CDS | 45.0% |
| !! | CCGGCTTCAAGACTTGTTTT+TGG | + | chr5.1:72836877-72836896 | None:intergenic | 45.0% |
| !! | GAATCTCAGCCATTTTAGCC+CGG | + | chr5.1:72837306-72837325 | None:intergenic | 45.0% |
| ACATATGCAAGGTCCGAGAG+GGG | + | chr5.1:72835257-72835276 | None:intergenic | 50.0% | |
| ATATCTGAGGGCCGAAAAGG+AGG | + | chr5.1:72836587-72836606 | None:intergenic | 50.0% | |
| CACATATGCAAGGTCCGAGA+GGG | + | chr5.1:72835258-72835277 | None:intergenic | 50.0% | |
| CCAATTCAGTTTGTGCCTCC+AGG | + | chr5.1:72837435-72837454 | None:intergenic | 50.0% | |
| CTCTCGGACCTTGCATATGT+GGG | - | chr5.1:72835257-72835276 | MS.gene017100:intron | 50.0% | |
| GAGAGTTGCGTTGTGTTTGG+TGG | + | chr5.1:72837231-72837250 | None:intergenic | 50.0% | |
| GCTGGTACCTTTAGCATGAG+TGG | + | chr5.1:72836720-72836739 | None:intergenic | 50.0% | |
| GCTTCCTCGATGTGTGTCAA+AGG | + | chr5.1:72835024-72835043 | None:intergenic | 50.0% | |
| TAACTTGGCGTGCACCAACT+GGG | + | chr5.1:72836295-72836314 | None:intergenic | 50.0% | |
| TGCACCACTCTATATGGGAG+AGG | - | chr5.1:72835621-72835640 | MS.gene017100:intron | 50.0% | |
| TGCTCTTGGAAGTTGGGATC+CGG | + | chr5.1:72836896-72836915 | None:intergenic | 50.0% | |
| TTAATTGTGGGACCCCCTCT+CGG | - | chr5.1:72835241-72835260 | MS.gene017100:intron | 50.0% | |
| ! | CCCTTTGGTGGCAGTTATGT+TGG | - | chr5.1:72835772-72835791 | MS.gene017100:intron | 50.0% |
| ! | CCTGGAGGCACAAACTGAAT+TGG | - | chr5.1:72837432-72837451 | MS.gene017100:intron | 50.0% |
| ! | GTTGTGTTTGGTGGTCTGTG+AGG | + | chr5.1:72837222-72837241 | None:intergenic | 50.0% |
| ACAAGGCGACCGGGCTAAAA+TGG | - | chr5.1:72837294-72837313 | MS.gene017100:CDS | 55.0% | |
| CATATGCAAGGTCCGAGAGG+GGG | + | chr5.1:72835256-72835275 | None:intergenic | 55.0% | |
| CCACATATGCAAGGTCCGAG+AGG | + | chr5.1:72835259-72835278 | None:intergenic | 55.0% | |
| CCTCTCGGACCTTGCATATG+TGG | - | chr5.1:72835256-72835275 | MS.gene017100:intron | 55.0% | |
| GTAACTTGGCGTGCACCAAC+TGG | + | chr5.1:72836296-72836315 | None:intergenic | 55.0% | |
| TCGGCCTTTGACACACATCG+AGG | - | chr5.1:72835017-72835036 | MS.gene017100:CDS | 55.0% | |
| TCTGGAAGTGGAGCATGAGC+TGG | - | chr5.1:72835496-72835515 | MS.gene017100:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 72834248 | 72837504 | 72834248 | ID=MS.gene017100 |
| chr5.1 | mRNA | 72834248 | 72837504 | 72834248 | ID=MS.gene017100.t1;Parent=MS.gene017100 |
| chr5.1 | exon | 72837472 | 72837504 | 72837472 | ID=MS.gene017100.t1.exon1;Parent=MS.gene017100.t1 |
| chr5.1 | CDS | 72837472 | 72837504 | 72837472 | ID=cds.MS.gene017100.t1;Parent=MS.gene017100.t1 |
| chr5.1 | exon | 72837236 | 72837355 | 72837236 | ID=MS.gene017100.t1.exon2;Parent=MS.gene017100.t1 |
| chr5.1 | CDS | 72837236 | 72837355 | 72837236 | ID=cds.MS.gene017100.t1;Parent=MS.gene017100.t1 |
| chr5.1 | exon | 72836702 | 72836824 | 72836702 | ID=MS.gene017100.t1.exon3;Parent=MS.gene017100.t1 |
| chr5.1 | CDS | 72836702 | 72836824 | 72836702 | ID=cds.MS.gene017100.t1;Parent=MS.gene017100.t1 |
| chr5.1 | exon | 72836235 | 72836303 | 72836235 | ID=MS.gene017100.t1.exon4;Parent=MS.gene017100.t1 |
| chr5.1 | CDS | 72836235 | 72836303 | 72836235 | ID=cds.MS.gene017100.t1;Parent=MS.gene017100.t1 |
| chr5.1 | exon | 72836057 | 72836145 | 72836057 | ID=MS.gene017100.t1.exon5;Parent=MS.gene017100.t1 |
| chr5.1 | CDS | 72836057 | 72836145 | 72836057 | ID=cds.MS.gene017100.t1;Parent=MS.gene017100.t1 |
| chr5.1 | exon | 72835858 | 72835966 | 72835858 | ID=MS.gene017100.t1.exon6;Parent=MS.gene017100.t1 |
| chr5.1 | CDS | 72835858 | 72835966 | 72835858 | ID=cds.MS.gene017100.t1;Parent=MS.gene017100.t1 |
| chr5.1 | exon | 72835479 | 72835547 | 72835479 | ID=MS.gene017100.t1.exon7;Parent=MS.gene017100.t1 |
| chr5.1 | CDS | 72835479 | 72835547 | 72835479 | ID=cds.MS.gene017100.t1;Parent=MS.gene017100.t1 |
| chr5.1 | exon | 72835279 | 72835392 | 72835279 | ID=MS.gene017100.t1.exon8;Parent=MS.gene017100.t1 |
| chr5.1 | CDS | 72835279 | 72835392 | 72835279 | ID=cds.MS.gene017100.t1;Parent=MS.gene017100.t1 |
| chr5.1 | exon | 72834248 | 72835171 | 72834248 | ID=MS.gene017100.t1.exon9;Parent=MS.gene017100.t1 |
| chr5.1 | CDS | 72834248 | 72835171 | 72834248 | ID=cds.MS.gene017100.t1;Parent=MS.gene017100.t1 |
| Gene Sequence |
| Protein sequence |
