Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030033.t1 | AET00383.1 | 93.9 | 472 | 27 | 1 | 3 | 472 | 78 | 549 | 1.70E-216 | 761.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030033.t1 | Q84WU2 | 53.4 | 208 | 92 | 4 | 5 | 208 | 609 | 815 | 8.5e-55 | 216.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030033.t1 | G7KD55 | 93.9 | 472 | 27 | 1 | 3 | 472 | 78 | 549 | 1.2e-216 | 761.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030033.t1 | MTR_5g091410 | 93.856 | 472 | 27 | 1 | 3 | 472 | 78 | 549 | 0.0 | 826 |
| MS.gene030033.t1 | MTR_5g091450 | 57.424 | 559 | 151 | 9 | 1 | 472 | 234 | 792 | 0.0 | 559 |
| MS.gene030033.t1 | MTR_5g091430 | 56.375 | 502 | 187 | 5 | 3 | 472 | 49 | 550 | 1.42e-178 | 511 |
| MS.gene030033.t1 | MTR_5g091180 | 58.333 | 468 | 143 | 8 | 8 | 444 | 254 | 700 | 8.40e-155 | 456 |
| MS.gene030033.t1 | MTR_5g091550 | 63.563 | 247 | 63 | 4 | 1 | 221 | 219 | 464 | 2.45e-89 | 281 |
| MS.gene030033.t1 | MTR_5g091550 | 63.563 | 247 | 63 | 4 | 1 | 221 | 224 | 469 | 2.98e-89 | 281 |
| MS.gene030033.t1 | MTR_5g091530 | 63.063 | 222 | 60 | 2 | 5 | 224 | 166 | 367 | 3.18e-88 | 275 |
| MS.gene030033.t1 | MTR_5g086700 | 66.667 | 216 | 68 | 3 | 1 | 212 | 611 | 826 | 1.54e-85 | 285 |
| MS.gene030033.t1 | MTR_5g086700 | 66.667 | 216 | 68 | 3 | 1 | 212 | 611 | 826 | 1.64e-85 | 284 |
| MS.gene030033.t1 | MTR_3g079840 | 63.426 | 216 | 75 | 3 | 1 | 212 | 607 | 822 | 1.30e-83 | 279 |
| MS.gene030033.t1 | MTR_3g079840 | 63.426 | 216 | 75 | 3 | 1 | 212 | 606 | 821 | 1.40e-83 | 279 |
| MS.gene030033.t1 | MTR_1g041240 | 55.814 | 215 | 90 | 3 | 3 | 212 | 609 | 823 | 3.40e-65 | 228 |
| MS.gene030033.t1 | MTR_1g041240 | 55.814 | 215 | 90 | 3 | 3 | 212 | 610 | 824 | 3.41e-65 | 228 |
| MS.gene030033.t1 | MTR_1g041240 | 55.814 | 215 | 90 | 3 | 3 | 212 | 608 | 822 | 3.66e-65 | 228 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030033.t1 | AT3G11910 | 52.315 | 216 | 98 | 4 | 1 | 212 | 604 | 818 | 7.90e-60 | 212 |
| MS.gene030033.t1 | AT3G11910 | 52.315 | 216 | 98 | 4 | 1 | 212 | 604 | 818 | 7.90e-60 | 212 |
| MS.gene030033.t1 | AT3G11910 | 52.315 | 216 | 98 | 4 | 1 | 212 | 605 | 819 | 8.00e-60 | 212 |
| MS.gene030033.t1 | AT3G11910 | 52.315 | 216 | 98 | 4 | 1 | 212 | 605 | 819 | 8.00e-60 | 212 |
| MS.gene030033.t1 | AT5G06600 | 51.111 | 225 | 104 | 4 | 1 | 221 | 607 | 829 | 3.48e-57 | 204 |
| MS.gene030033.t1 | AT5G06600 | 51.111 | 225 | 104 | 4 | 1 | 221 | 606 | 828 | 5.37e-57 | 204 |
| MS.gene030033.t1 | AT5G06600 | 51.111 | 225 | 104 | 4 | 1 | 221 | 607 | 829 | 5.59e-57 | 204 |
Find 83 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCAATCTCAACAATTT+TGG | 0.130984 | 5.2:+77346170 | None:intergenic |
| TGACGAATTAAAACTGTTTC+TGG | 0.158531 | 5.2:-77347830 | MS.gene030033:CDS |
| TACCGTAGCTCCTCTCTTTC+AGG | 0.184833 | 5.2:+77347632 | None:intergenic |
| CAGCTCAATTCCAGCGCTTT+TGG | 0.258793 | 5.2:-77349216 | MS.gene030033:CDS |
| ACAGGAAAACATTTGACTTT+TGG | 0.281379 | 5.2:+77347168 | None:intergenic |
| TCCGGAGCACGAAACTAAAT+TGG | 0.288153 | 5.2:-77346049 | MS.gene030033:CDS |
| AGCAAATACATGAATCAAAA+TGG | 0.300931 | 5.2:+77345985 | None:intergenic |
| CCTCCCTGATCAACTTCTTC+AGG | 0.313808 | 5.2:-77346574 | MS.gene030033:CDS |
| TCTATATCTGAGGGACAAAA+AGG | 0.328583 | 5.2:+77346807 | None:intergenic |
| AATGTTAATTTCTTCTCAAC+AGG | 0.339875 | 5.2:+77347150 | None:intergenic |
| GAAATTTGCTGATCAAATTC+CGG | 0.348773 | 5.2:-77346067 | MS.gene030033:CDS |
| ACAAAGTTAAATAAATTTGC+TGG | 0.349648 | 5.2:-77347470 | MS.gene030033:CDS |
| TTCCAATGATGCTTCATCTT+CGG | 0.360850 | 5.2:+77346782 | None:intergenic |
| GAAAATGTGGCTAAAGAGTT+TGG | 0.365160 | 5.2:-77349244 | MS.gene030033:CDS |
| ATTAAAACTGTTTCTGGAAG+TGG | 0.395656 | 5.2:-77347824 | MS.gene030033:CDS |
| CCCACTGCACCACTCAATAT+CGG | 0.409594 | 5.2:-77347692 | MS.gene030033:CDS |
| ATCAACTTCTTCAGGAATTG+AGG | 0.415620 | 5.2:-77346566 | MS.gene030033:CDS |
| CAAGAGAGTTGAGTTCTGTT+TGG | 0.420830 | 5.2:+77346247 | None:intergenic |
| CTCATACAAGAATGCAAGTT+GGG | 0.422601 | 5.2:-77349537 | None:intergenic |
| ATCCGAAGATGAAGCATCAT+TGG | 0.433069 | 5.2:-77346784 | MS.gene030033:CDS |
| TCCAATTTAGTTTCGTGCTC+CGG | 0.434904 | 5.2:+77346048 | None:intergenic |
| AATTCCTGAAGAAGTTGATC+AGG | 0.436725 | 5.2:+77346570 | None:intergenic |
| TCCATGTATGAAAGAACATT+AGG | 0.441990 | 5.2:+77346959 | None:intergenic |
| TCCTAATGTTCTTTCATACA+TGG | 0.442035 | 5.2:-77346960 | MS.gene030033:CDS |
| TGCAATCGACAAAGTTATAT+CGG | 0.444376 | 5.2:-77346637 | MS.gene030033:CDS |
| CCGTTCTATGGCAGTTATGC+TGG | 0.448933 | 5.2:-77347536 | MS.gene030033:intron |
| CCGGGATAATGAGGAATTGA+AGG | 0.460597 | 5.2:-77346316 | MS.gene030033:CDS |
| GTTGTTAGATCTTGATGATA+TGG | 0.461546 | 5.2:-77346679 | MS.gene030033:CDS |
| TGAAGAGATCGAACTTTATG+AGG | 0.464839 | 5.2:-77347435 | MS.gene030033:intron |
| AAATGGAGGGTTTGCCCTCA+AGG | 0.477451 | 5.2:+77346002 | None:intergenic |
| TCAACTTCTTCAGGAATTGA+GGG | 0.478362 | 5.2:-77346565 | MS.gene030033:CDS |
| GAGAGTTGAGTTCTGTTTGG+TGG | 0.479747 | 5.2:+77346250 | None:intergenic |
| TAAAGTTCGATCTCTTCATC+AGG | 0.486377 | 5.2:+77347440 | None:intergenic |
| AACTTTGTTAAGATTTGTGA+TGG | 0.495239 | 5.2:+77347485 | None:intergenic |
| GCCGAGATGGTCGACATGTA+TGG | 0.498312 | 5.2:+77349173 | None:intergenic |
| CCACTCAATATCGGAGAGAA+TGG | 0.506634 | 5.2:-77347683 | MS.gene030033:CDS |
| TTGGTTGTAAAATTTAAACT+AGG | 0.511006 | 5.2:-77346522 | MS.gene030033:CDS |
| CATGATCAATAGCGAGGCGA+TGG | 0.523992 | 5.2:+77346097 | None:intergenic |
| TCCGATATTGAGTGGTGCAG+TGG | 0.529032 | 5.2:+77347691 | None:intergenic |
| TTTCCCATAACCAAAAGCGC+TGG | 0.535608 | 5.2:+77349206 | None:intergenic |
| TCTGGAAGTGGAGCGTGGGC+TGG | 0.536325 | 5.2:-77347812 | MS.gene030033:intron |
| ATGGTAGATGTGGATGTCAT+TGG | 0.537197 | 5.2:-77346660 | MS.gene030033:CDS |
| GAGCACCGACCGGGATAATG+AGG | 0.542312 | 5.2:-77346325 | MS.gene030033:CDS |
| AGCTAAGAAGAGCACCGACC+GGG | 0.544197 | 5.2:-77346334 | MS.gene030033:CDS |
| ATGTCTGTCAGAAGCCGAGA+TGG | 0.544726 | 5.2:+77349160 | None:intergenic |
| ATCGACAAAGTTATATCGGA+AGG | 0.546426 | 5.2:-77346633 | MS.gene030033:CDS |
| CAAAAGCGCTGGAATTGAGC+TGG | 0.551315 | 5.2:+77349217 | None:intergenic |
| GGAATATGTGTACAATCGCC+AGG | 0.551328 | 5.2:-77346939 | MS.gene030033:intron |
| GAAGGTCTACAAAACCTTGA+GGG | 0.554427 | 5.2:-77346016 | MS.gene030033:CDS |
| ATGTGATATGTAGGAAAATG+TGG | 0.556592 | 5.2:-77349257 | MS.gene030033:intron |
| CCTCATACAAGAATGCAAGT+TGG | 0.558314 | 5.2:-77349538 | None:intergenic |
| CCTTCAATTCCTCATTATCC+CGG | 0.561287 | 5.2:+77346316 | None:intergenic |
| ATCTTCGGATTCTATATCTG+AGG | 0.562134 | 5.2:+77346797 | None:intergenic |
| CTGTTTCTGGAAGTGGAGCG+TGG | 0.563550 | 5.2:-77347817 | MS.gene030033:CDS |
| CCGATATTGAGTGGTGCAGT+GGG | 0.565192 | 5.2:+77347692 | None:intergenic |
| CAATTCCTCATTATCCCGGT+CGG | 0.565614 | 5.2:+77346320 | None:intergenic |
| ACCATACATGTCGACCATCT+CGG | 0.571073 | 5.2:-77349174 | MS.gene030033:CDS |
| CAGCTAAGAAGAGCACCGAC+CGG | 0.573133 | 5.2:-77346335 | MS.gene030033:CDS |
| TCTTCGGATTCTATATCTGA+GGG | 0.574584 | 5.2:+77346798 | None:intergenic |
| AGTAAACTTCAATGTAGTCA+AGG | 0.582753 | 5.2:-77346487 | MS.gene030033:CDS |
| ACTTGCTCAACAAAATTGAG+TGG | 0.584340 | 5.2:-77346398 | MS.gene030033:CDS |
| GTTATATGATCCTGAAAGAG+AGG | 0.584929 | 5.2:-77347642 | MS.gene030033:CDS |
| TTCTGTTTGGTGGATGTCGA+GGG | 0.586793 | 5.2:+77346260 | None:intergenic |
| CTATGAATGCAGTTAGACAA+TGG | 0.587686 | 5.2:-77347040 | MS.gene030033:intron |
| ATCCTGAAAGAGAGGAGCTA+CGG | 0.592917 | 5.2:-77347634 | MS.gene030033:intron |
| GTTCTGTTTGGTGGATGTCG+AGG | 0.599369 | 5.2:+77346259 | None:intergenic |
| TCTTGATGATATGGTAGATG+TGG | 0.605563 | 5.2:-77346670 | MS.gene030033:CDS |
| AAATACATGAATCAAAATGG+AGG | 0.606725 | 5.2:+77345988 | None:intergenic |
| AATACATGAATCAAAATGGA+GGG | 0.610120 | 5.2:+77345989 | None:intergenic |
| TGTTTCTGGAAGTGGAGCGT+GGG | 0.613081 | 5.2:-77347816 | MS.gene030033:CDS |
| TAAATTGGAAGGTCATGAGA+AGG | 0.624503 | 5.2:-77346034 | MS.gene030033:CDS |
| CCATTCTCTCCGATATTGAG+TGG | 0.627085 | 5.2:+77347683 | None:intergenic |
| TCTATGGCAGTTATGCTGGA+AGG | 0.627842 | 5.2:-77347532 | MS.gene030033:intron |
| GAGCACGAAACTAAATTGGA+AGG | 0.632199 | 5.2:-77346045 | MS.gene030033:CDS |
| ATTCCTGAAGAAGTTGATCA+GGG | 0.638559 | 5.2:+77346571 | None:intergenic |
| AGAAGGTCTACAAAACCTTG+AGG | 0.643862 | 5.2:-77346017 | MS.gene030033:CDS |
| TCGACAAAGTTATATCGGAA+GGG | 0.656260 | 5.2:-77346632 | MS.gene030033:CDS |
| ATGAAAGAACATTAGGATAG+CGG | 0.658992 | 5.2:+77346966 | None:intergenic |
| ACAATTGAAAGAGCTTCACA+AGG | 0.683760 | 5.2:-77347854 | MS.gene030033:CDS |
| ACTTGACATGATCAATAGCG+AGG | 0.690951 | 5.2:+77346091 | None:intergenic |
| AATTAATGATATGATAGACG+AGG | 0.692673 | 5.2:-77346706 | MS.gene030033:CDS |
| ATTAACATTTGAAGATAACG+AGG | 0.703915 | 5.2:-77347136 | MS.gene030033:intron |
| CCTGAAGAAGTTGATCAGGG+AGG | 0.753049 | 5.2:+77346574 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAAGAAATAAAAAGA+AGG | + | chr5.2:77347460-77347479 | None:intergenic | 10.0% |
| !! | ATATATAATCAAATATGTTA+AGG | - | chr5.2:77347056-77347075 | MS.gene030033:intron | 10.0% |
| !!! | AAATGTTTTTATTTTATTTG+GGG | + | chr5.2:77346668-77346687 | None:intergenic | 10.0% |
| !!! | TAAGAAATTAACATTTTAAT+TGG | - | chr5.2:77348439-77348458 | MS.gene030033:intron | 10.0% |
| !!! | AATGTTTTTATTTTATTTGG+GGG | + | chr5.2:77346667-77346686 | None:intergenic | 15.0% |
| !!! | ATATATTTAATCTTGTTTAC+TGG | - | chr5.2:77347318-77347337 | MS.gene030033:intron | 15.0% |
| !!! | CAATATAAACCATTTATTTT+TGG | + | chr5.2:77346869-77346888 | None:intergenic | 15.0% |
| !!! | TACTTAGACATTATTTTTTA+TGG | + | chr5.2:77347124-77347143 | None:intergenic | 15.0% |
| !!! | TATATTTAATCTTGTTTACT+GGG | - | chr5.2:77347319-77347338 | MS.gene030033:intron | 15.0% |
| !! | AAGTAATTATAGAAGCAAAA+AGG | - | chr5.2:77347139-77347158 | MS.gene030033:CDS | 20.0% |
| !! | ACAAAGTTAAATAAATTTGC+TGG | - | chr5.2:77348055-77348074 | MS.gene030033:intron | 20.0% |
| !! | ACTATCTTATACAATAAACA+TGG | - | chr5.2:77346964-77346983 | MS.gene030033:CDS | 20.0% |
| !! | ATAAATTATGAAGCTTAAAG+CGG | + | chr5.2:77346458-77346477 | None:intergenic | 20.0% |
| !! | CTATCTTATACAATAAACAT+GGG | - | chr5.2:77346965-77346984 | MS.gene030033:CDS | 20.0% |
| !! | GACAAACTTCATTATTATAT+AGG | - | chr5.2:77347802-77347821 | MS.gene030033:intron | 20.0% |
| !! | TAAAATAATTGTTTCCTATG+AGG | + | chr5.2:77346065-77346084 | None:intergenic | 20.0% |
| !! | TTGGTTGTAAAATTTAAACT+AGG | - | chr5.2:77349003-77349022 | MS.gene030033:intron | 20.0% |
| !!! | ATGTTTTTATTTTATTTGGG+GGG | + | chr5.2:77346666-77346685 | None:intergenic | 20.0% |
| !!! | ATTGATTTTATGTGATATGT+AGG | - | chr5.2:77346259-77346278 | MS.gene030033:CDS | 20.0% |
| !!! | GTTTTTATACTGATTGTTTT+TGG | - | chr5.2:77347507-77347526 | MS.gene030033:CDS | 20.0% |
| ! | AAAAATCACAATGCTTTAGT+TGG | - | chr5.2:77346103-77346122 | MS.gene030033:CDS | 25.0% |
| ! | AACTTTGTTAAGATTTGTGA+TGG | + | chr5.2:77348043-77348062 | None:intergenic | 25.0% |
| ! | AATACATTTGATGTCAACTA+AGG | + | chr5.2:77347968-77347987 | None:intergenic | 25.0% |
| ! | AATGTTAATTTCTTCTCAAC+AGG | + | chr5.2:77348378-77348397 | None:intergenic | 25.0% |
| ! | AATTAATGATATGATAGACG+AGG | - | chr5.2:77348819-77348838 | MS.gene030033:intron | 25.0% |
| ! | AGAGGAAGAAAAAAAAACTA+TGG | + | chr5.2:77347536-77347555 | None:intergenic | 25.0% |
| ! | ATTAACATTTGAAGATAACG+AGG | - | chr5.2:77348389-77348408 | MS.gene030033:intron | 25.0% |
| ! | ATTCAACATGTAACATAATG+AGG | + | chr5.2:77346546-77346565 | None:intergenic | 25.0% |
| ! | CAAATATGTTAAGGAGAATT+TGG | - | chr5.2:77347065-77347084 | MS.gene030033:intron | 25.0% |
| ! | GAGGAAGAAAAAAAAACTAT+GGG | + | chr5.2:77347535-77347554 | None:intergenic | 25.0% |
| ! | GATCCTTAAAGACTAAAAAA+AGG | - | chr5.2:77346726-77346745 | MS.gene030033:CDS | 25.0% |
| ! | TAGAAACAGGATAAGTATAA+GGG | + | chr5.2:77348659-77348678 | None:intergenic | 25.0% |
| ! | TGTACAAAGCCAAAAATAAA+TGG | - | chr5.2:77346857-77346876 | MS.gene030033:intron | 25.0% |
| ! | TTAACATATGTTGTGGTAAA+AGG | - | chr5.2:77347938-77347957 | MS.gene030033:intron | 25.0% |
| ! | TTCAACATGTAACATAATGA+GGG | + | chr5.2:77346545-77346564 | None:intergenic | 25.0% |
| ! | TTGAATCTAATGATCTGTAA+AGG | - | chr5.2:77348270-77348289 | MS.gene030033:intron | 25.0% |
| !! | AGAACACTTCTTGTAATTTT+TGG | + | chr5.2:77346991-77347010 | None:intergenic | 25.0% |
| !!! | ATATTTCATGTTTTCTGAAG+CGG | + | chr5.2:77347286-77347305 | None:intergenic | 25.0% |
| !!! | CATCTGTTATTTTTGTAAGT+TGG | - | chr5.2:77346223-77346242 | MS.gene030033:CDS | 25.0% |
| !!! | GGGCTATAATTTTTTATATG+AGG | - | chr5.2:77347339-77347358 | MS.gene030033:intron | 25.0% |
| !!! | TACAACCAAGTCTTTTTTAA+AGG | + | chr5.2:77348992-77349011 | None:intergenic | 25.0% |
| !!! | TGTGATTTTAACATATGTTG+TGG | - | chr5.2:77347931-77347950 | MS.gene030033:intron | 25.0% |
| !!! | TGTTTTTATTTTATTTGGGG+GGG | + | chr5.2:77346665-77346684 | None:intergenic | 25.0% |
| AAAAAAACCACAAGATTCGT+GGG | + | chr5.2:77346147-77346166 | None:intergenic | 30.0% | |
| AAAAAGAAGGTAGTCAAAGA+TGG | + | chr5.2:77347447-77347466 | None:intergenic | 30.0% | |
| AAAAGGAAAAGAAGGAAAAG+AGG | - | chr5.2:77347156-77347175 | MS.gene030033:CDS | 30.0% | |
| AACCTCAAAAAGAAAATACC+TGG | + | chr5.2:77348607-77348626 | None:intergenic | 30.0% | |
| AGAAACAGGATAAGTATAAG+GGG | + | chr5.2:77348658-77348677 | None:intergenic | 30.0% | |
| AGTAAACTTCAATGTAGTCA+AGG | - | chr5.2:77349038-77349057 | MS.gene030033:intron | 30.0% | |
| ATGAAAGAACATTAGGATAG+CGG | + | chr5.2:77348562-77348581 | None:intergenic | 30.0% | |
| ATGTGATATGTAGGAAAATG+TGG | - | chr5.2:77346268-77346287 | MS.gene030033:CDS | 30.0% | |
| CTAGAAACAGGATAAGTATA+AGG | + | chr5.2:77348660-77348679 | None:intergenic | 30.0% | |
| GTTTGAGAAACTCGAAAAAT+TGG | - | chr5.2:77349152-77349171 | MS.gene030033:CDS | 30.0% | |
| TAGAAGCAAAAAGGAAAAGA+AGG | - | chr5.2:77347148-77347167 | MS.gene030033:CDS | 30.0% | |
| TCAAATGTATTTCCGTTCTA+TGG | - | chr5.2:77347977-77347996 | MS.gene030033:intron | 30.0% | |
| TCAACATGTAACATAATGAG+GGG | + | chr5.2:77346544-77346563 | None:intergenic | 30.0% | |
| TCCATGTATGAAAGAACATT+AGG | + | chr5.2:77348569-77348588 | None:intergenic | 30.0% | |
| TCCTAATGTTCTTTCATACA+TGG | - | chr5.2:77348565-77348584 | MS.gene030033:intron | 30.0% | |
| TGACGAATTAAAACTGTTTC+TGG | - | chr5.2:77347695-77347714 | MS.gene030033:CDS | 30.0% | |
| TGCAATCGACAAAGTTATAT+CGG | - | chr5.2:77348888-77348907 | MS.gene030033:intron | 30.0% | |
| ! | AGCTTCAATCTCAACAATTT+TGG | + | chr5.2:77349358-77349377 | None:intergenic | 30.0% |
| ! | CTTATACTTATCCTGTTTCT+AGG | - | chr5.2:77348658-77348677 | MS.gene030033:intron | 30.0% |
| ! | GTTGTTAGATCTTGATGATA+TGG | - | chr5.2:77348846-77348865 | MS.gene030033:intron | 30.0% |
| ! | TATCGCCTTTAAAAAAGACT+TGG | - | chr5.2:77348984-77349003 | MS.gene030033:intron | 30.0% |
| ! | TTTTTATGAAATTTGGCAGC+AGG | + | chr5.2:77348155-77348174 | None:intergenic | 30.0% |
| !! | ACAGGAAAACATTTGACTTT+TGG | + | chr5.2:77348360-77348379 | None:intergenic | 30.0% |
| !! | ATTAAAACTGTTTCTGGAAG+TGG | - | chr5.2:77347701-77347720 | MS.gene030033:CDS | 30.0% |
| !! | GAAATTTGCTGATCAAATTC+CGG | - | chr5.2:77349458-77349477 | MS.gene030033:intron | 30.0% |
| !! | TATTTTAGATGCATCCTCAT+AGG | - | chr5.2:77346048-77346067 | MS.gene030033:CDS | 30.0% |
| !!! | GCACCTTTTTTTAGTCTTTA+AGG | + | chr5.2:77346732-77346751 | None:intergenic | 30.0% |
| !!! | TTTTGGCTTTGTACAAACTA+AGG | + | chr5.2:77346852-77346871 | None:intergenic | 30.0% |
| ACAATTGAAAGAGCTTCACA+AGG | - | chr5.2:77347671-77347690 | MS.gene030033:CDS | 35.0% | |
| ACATATGTTGTGGTAAAAGG+TGG | - | chr5.2:77347941-77347960 | MS.gene030033:intron | 35.0% | |
| ACTTGCTCAACAAAATTGAG+TGG | - | chr5.2:77349127-77349146 | MS.gene030033:intron | 35.0% | |
| ATCAACTTCTTCAGGAATTG+AGG | - | chr5.2:77348959-77348978 | MS.gene030033:intron | 35.0% | |
| ATCGACAAAGTTATATCGGA+AGG | - | chr5.2:77348892-77348911 | MS.gene030033:intron | 35.0% | |
| ATCTTCGGATTCTATATCTG+AGG | + | chr5.2:77348731-77348750 | None:intergenic | 35.0% | |
| ATGTATATGCAAGTTGCAAG+TGG | - | chr5.2:77347485-77347504 | MS.gene030033:CDS | 35.0% | |
| ATTTCTTAGTATGTGCCAAC+CGG | + | chr5.2:77348427-77348446 | None:intergenic | 35.0% | |
| CAAAAAAACCACAAGATTCG+TGG | + | chr5.2:77346148-77346167 | None:intergenic | 35.0% | |
| CACAGATAGAACTAAGTATC+AGG | + | chr5.2:77346591-77346610 | None:intergenic | 35.0% | |
| CATGCTTGAAAAACTACAAG+GGG | - | chr5.2:77349326-77349345 | MS.gene030033:intron | 35.0% | |
| CCATGCTTGAAAAACTACAA+GGG | - | chr5.2:77349325-77349344 | MS.gene030033:intron | 35.0% | |
| CTAATTTCCTGCACAACAAT+AGG | + | chr5.2:77348330-77348349 | None:intergenic | 35.0% | |
| CTATGAATGCAGTTAGACAA+TGG | - | chr5.2:77348485-77348504 | MS.gene030033:intron | 35.0% | |
| CTCATTCTGATTCAAATTGC+AGG | - | chr5.2:77347644-77347663 | MS.gene030033:CDS | 35.0% | |
| GAAAATGTGGCTAAAGAGTT+TGG | - | chr5.2:77346281-77346300 | MS.gene030033:CDS | 35.0% | |
| GACAAAAAGGAACCTAAACA+AGG | + | chr5.2:77348708-77348727 | None:intergenic | 35.0% | |
| GAGGAAAGAAAAGAAGGAAA+AGG | - | chr5.2:77347175-77347194 | MS.gene030033:CDS | 35.0% | |
| GGAAAAGAGGAAAGAAAAGA+AGG | - | chr5.2:77347169-77347188 | MS.gene030033:CDS | 35.0% | |
| GTTATATGATCCTGAAAGAG+AGG | - | chr5.2:77347883-77347902 | MS.gene030033:intron | 35.0% | |
| TAAAGTTCGATCTCTTCATC+AGG | + | chr5.2:77348088-77348107 | None:intergenic | 35.0% | |
| TAAATTGCCTATTGTTGTGC+AGG | - | chr5.2:77348320-77348339 | MS.gene030033:intron | 35.0% | |
| TAAATTGGAAGGTCATGAGA+AGG | - | chr5.2:77349491-77349510 | MS.gene030033:intron | 35.0% | |
| TCAACTTCTTCAGGAATTGA+GGG | - | chr5.2:77348960-77348979 | MS.gene030033:intron | 35.0% | |
| TCGACAAAGTTATATCGGAA+GGG | - | chr5.2:77348893-77348912 | MS.gene030033:intron | 35.0% | |
| TCTATATCTGAGGGACAAAA+AGG | + | chr5.2:77348721-77348740 | None:intergenic | 35.0% | |
| TCTTCGGATTCTATATCTGA+GGG | + | chr5.2:77348730-77348749 | None:intergenic | 35.0% | |
| TGAAGAGATCGAACTTTATG+AGG | - | chr5.2:77348090-77348109 | MS.gene030033:intron | 35.0% | |
| TTCAAGATAAGCCTAGAAAC+AGG | + | chr5.2:77348672-77348691 | None:intergenic | 35.0% | |
| TTCCAATGATGCTTCATCTT+CGG | + | chr5.2:77348746-77348765 | None:intergenic | 35.0% | |
| TTCTGATTCAAATTGCAGGT+TGG | - | chr5.2:77347648-77347667 | MS.gene030033:CDS | 35.0% | |
| ! | AATTCCTGAAGAAGTTGATC+AGG | + | chr5.2:77348958-77348977 | None:intergenic | 35.0% |
| ! | ATGACTTGTCAGAACAGAAA+GGG | - | chr5.2:77348222-77348241 | MS.gene030033:intron | 35.0% |
| ! | ATTCCTGAAGAAGTTGATCA+GGG | + | chr5.2:77348957-77348976 | None:intergenic | 35.0% |
| ! | TATGACTTGTCAGAACAGAA+AGG | - | chr5.2:77348221-77348240 | MS.gene030033:intron | 35.0% |
| ! | TCTTGATGATATGGTAGATG+TGG | - | chr5.2:77348855-77348874 | MS.gene030033:intron | 35.0% |
| ! | TGAACGTTGTTTCCTTGTTT+AGG | - | chr5.2:77348693-77348712 | MS.gene030033:intron | 35.0% |
| !! | CTGATACTTAGTTCTATCTG+TGG | - | chr5.2:77346589-77346608 | MS.gene030033:CDS | 35.0% |
| AACGAGGTATAGTACATACC+CGG | - | chr5.2:77348405-77348424 | MS.gene030033:intron | 40.0% | |
| ACTTGACATGATCAATAGCG+AGG | + | chr5.2:77349437-77349456 | None:intergenic | 40.0% | |
| AGAAGGTCTACAAAACCTTG+AGG | - | chr5.2:77349508-77349527 | MS.gene030033:intron | 40.0% | |
| ATGGTAGATGTGGATGTCAT+TGG | - | chr5.2:77348865-77348884 | MS.gene030033:intron | 40.0% | |
| CAAGAGAGTTGAGTTCTGTT+TGG | + | chr5.2:77349281-77349300 | None:intergenic | 40.0% | |
| CCTTCAATTCCTCATTATCC+CGG | + | chr5.2:77349212-77349231 | None:intergenic | 40.0% | |
| CTCGGCTCTCATGTAAAAAT+AGG | - | chr5.2:77346639-77346658 | MS.gene030033:CDS | 40.0% | |
| GAAGGTCTACAAAACCTTGA+GGG | - | chr5.2:77349509-77349528 | MS.gene030033:intron | 40.0% | |
| GAGATCGAACTTTATGAGGT+TGG | - | chr5.2:77348094-77348113 | MS.gene030033:intron | 40.0% | |
| GAGCACGAAACTAAATTGGA+AGG | - | chr5.2:77349480-77349499 | MS.gene030033:intron | 40.0% | |
| GCCATGCTTGAAAAACTACA+AGG | - | chr5.2:77349324-77349343 | MS.gene030033:intron | 40.0% | |
| GTCAAAGATGGCTGAAAAAC+AGG | + | chr5.2:77347435-77347454 | None:intergenic | 40.0% | |
| TGTGCATGCTTGTAATGCTT+GGG | + | chr5.2:77347251-77347270 | None:intergenic | 40.0% | |
| TTATATGAGGCCCATACCTT+GGG | - | chr5.2:77347352-77347371 | MS.gene030033:intron | 40.0% | |
| TTTATATGAGGCCCATACCT+TGG | - | chr5.2:77347351-77347370 | MS.gene030033:intron | 40.0% | |
| TTTCTTAGTATGTGCCAACC+GGG | + | chr5.2:77348426-77348445 | None:intergenic | 40.0% | |
| ! | ATCCGAAGATGAAGCATCAT+TGG | - | chr5.2:77348741-77348760 | MS.gene030033:intron | 40.0% |
| ! | CGCCAGGTATTTTCTTTTTG+AGG | - | chr5.2:77348602-77348621 | MS.gene030033:intron | 40.0% |
| ! | TCCAATTTAGTTTCGTGCTC+CGG | + | chr5.2:77349480-77349499 | None:intergenic | 40.0% |
| !! | AATTCCAGCGCTTTTGGTTA+TGG | - | chr5.2:77346315-77346334 | MS.gene030033:CDS | 40.0% |
| !! | ACTTAGTTCTATCTGTGGTC+AGG | - | chr5.2:77346594-77346613 | MS.gene030033:CDS | 40.0% |
| !! | ATTCCAGCGCTTTTGGTTAT+GGG | - | chr5.2:77346316-77346335 | MS.gene030033:CDS | 40.0% |
| !! | CTTAGTTCTATCTGTGGTCA+GGG | - | chr5.2:77346595-77346614 | MS.gene030033:CDS | 40.0% |
| !!! | CCCTTGTAGTTTTTCAAGCA+TGG | + | chr5.2:77349328-77349347 | None:intergenic | 40.0% |
| ACCATACATGTCGACCATCT+CGG | - | chr5.2:77346351-77346370 | MS.gene030033:CDS | 45.0% | |
| AGCCTCCAATTACTTAGGGA+CGG | + | chr5.2:77346621-77346640 | None:intergenic | 45.0% | |
| AGGTATAGTACATACCCGGT+TGG | - | chr5.2:77348409-77348428 | MS.gene030033:intron | 45.0% | |
| ATCCTGAAAGAGAGGAGCTA+CGG | - | chr5.2:77347891-77347910 | MS.gene030033:intron | 45.0% | |
| CAATTCCTCATTATCCCGGT+CGG | + | chr5.2:77349208-77349227 | None:intergenic | 45.0% | |
| CATATGTCCCACGAATCTTG+TGG | - | chr5.2:77346137-77346156 | MS.gene030033:CDS | 45.0% | |
| CCACTCAATATCGGAGAGAA+TGG | - | chr5.2:77347842-77347861 | MS.gene030033:CDS | 45.0% | |
| CCAGCATAACTGCCATAGAA+CGG | + | chr5.2:77347992-77348011 | None:intergenic | 45.0% | |
| CCATTCTCTCCGATATTGAG+TGG | + | chr5.2:77347845-77347864 | None:intergenic | 45.0% | |
| CCGGGATAATGAGGAATTGA+AGG | - | chr5.2:77349209-77349228 | MS.gene030033:CDS | 45.0% | |
| CTGTGCATGCTTGTAATGCT+TGG | + | chr5.2:77347252-77347271 | None:intergenic | 45.0% | |
| CTTCCTCTAAATGCTTGCGA+GGG | - | chr5.2:77347548-77347567 | MS.gene030033:intron | 45.0% | |
| GAAAAACAGGTACCACAGAC+AGG | + | chr5.2:77347422-77347441 | None:intergenic | 45.0% | |
| GAGAGTTGAGTTCTGTTTGG+TGG | + | chr5.2:77349278-77349297 | None:intergenic | 45.0% | |
| GCAAACAGCTCAATGAAGCT+GGG | + | chr5.2:77347382-77347401 | None:intergenic | 45.0% | |
| GCTTGTAATGCTTGGGTCAT+GGG | + | chr5.2:77347244-77347263 | None:intergenic | 45.0% | |
| GGAATATGTGTACAATCGCC+AGG | - | chr5.2:77348586-77348605 | MS.gene030033:intron | 45.0% | |
| TATATGAGGCCCATACCTTG+GGG | - | chr5.2:77347353-77347372 | MS.gene030033:intron | 45.0% | |
| TCCCTAAGTAATTGGAGGCT+CGG | - | chr5.2:77346621-77346640 | MS.gene030033:CDS | 45.0% | |
| TCCGGAGCACGAAACTAAAT+TGG | - | chr5.2:77349476-77349495 | MS.gene030033:intron | 45.0% | |
| TCTATGGCAGTTATGCTGGA+AGG | - | chr5.2:77347993-77348012 | MS.gene030033:intron | 45.0% | |
| TCTTCCTCTAAATGCTTGCG+AGG | - | chr5.2:77347547-77347566 | MS.gene030033:intron | 45.0% | |
| TGCAAACAGCTCAATGAAGC+TGG | + | chr5.2:77347383-77347402 | None:intergenic | 45.0% | |
| TGCTTGTAATGCTTGGGTCA+TGG | + | chr5.2:77347245-77347264 | None:intergenic | 45.0% | |
| ! | TTCTGTTTGGTGGATGTCGA+GGG | + | chr5.2:77349268-77349287 | None:intergenic | 45.0% |
| ! | TTTCCCATAACCAAAAGCGC+TGG | + | chr5.2:77346322-77346341 | None:intergenic | 45.0% |
| !!! | AAAAATGTTTTTATTTTATT+TGG | + | chr5.2:77346670-77346689 | None:intergenic | 5.0% |
| !!! | AAAATGTTTTTATTTTATTT+GGG | + | chr5.2:77346669-77346688 | None:intergenic | 5.0% |
| !!! | ATTTAAATTTTTATGAAATT+TGG | + | chr5.2:77348162-77348181 | None:intergenic | 5.0% |
| AAATGGAGGGTTTGCCCTCA+AGG | + | chr5.2:77349526-77349545 | None:intergenic | 50.0% | |
| AAGCATGCACAGCTACCACT+AGG | - | chr5.2:77347260-77347279 | MS.gene030033:intron | 50.0% | |
| AGCCGAGCCTCCAATTACTT+AGG | + | chr5.2:77346626-77346645 | None:intergenic | 50.0% | |
| ATGTCTGTCAGAAGCCGAGA+TGG | + | chr5.2:77346368-77346387 | None:intergenic | 50.0% | |
| CATGATCAATAGCGAGGCGA+TGG | + | chr5.2:77349431-77349450 | None:intergenic | 50.0% | |
| CCCACTGCACCACTCAATAT+CGG | - | chr5.2:77347833-77347852 | MS.gene030033:CDS | 50.0% | |
| CCGATATTGAGTGGTGCAGT+GGG | + | chr5.2:77347836-77347855 | None:intergenic | 50.0% | |
| CCGTTCTATGGCAGTTATGC+TGG | - | chr5.2:77347989-77348008 | MS.gene030033:intron | 50.0% | |
| CCTCCCTGATCAACTTCTTC+AGG | - | chr5.2:77348951-77348970 | MS.gene030033:intron | 50.0% | |
| GCCGAGCCTCCAATTACTTA+GGG | + | chr5.2:77346625-77346644 | None:intergenic | 50.0% | |
| TACCGTAGCTCCTCTCTTTC+AGG | + | chr5.2:77347896-77347915 | None:intergenic | 50.0% | |
| TCCGATATTGAGTGGTGCAG+TGG | + | chr5.2:77347837-77347856 | None:intergenic | 50.0% | |
| ! | CAGCTCAATTCCAGCGCTTT+TGG | - | chr5.2:77346309-77346328 | MS.gene030033:CDS | 50.0% |
| ! | CCTGAAGAAGTTGATCAGGG+AGG | + | chr5.2:77348954-77348973 | None:intergenic | 50.0% |
| ! | GTTCTGTTTGGTGGATGTCG+AGG | + | chr5.2:77349269-77349288 | None:intergenic | 50.0% |
| !! | CAAAAGCGCTGGAATTGAGC+TGG | + | chr5.2:77346311-77346330 | None:intergenic | 50.0% |
| !! | TGTTTCTGGAAGTGGAGCGT+GGG | - | chr5.2:77347709-77347728 | MS.gene030033:intron | 50.0% |
| !!! | TGTTTTCTGAAGCGGCCTAG+TGG | + | chr5.2:77347278-77347297 | None:intergenic | 50.0% |
| CAGGGCCGTCCCTAAGTAAT+TGG | - | chr5.2:77346613-77346632 | MS.gene030033:CDS | 55.0% | |
| GCACCCTCGCAAGCATTTAG+AGG | + | chr5.2:77347554-77347573 | None:intergenic | 55.0% | |
| GCCGAGATGGTCGACATGTA+TGG | + | chr5.2:77346355-77346374 | None:intergenic | 55.0% | |
| GGCCGTCCCTAAGTAATTGG+AGG | - | chr5.2:77346616-77346635 | MS.gene030033:CDS | 55.0% | |
| !! | AGCTAAGAAGAGCACCGACC+GGG | - | chr5.2:77349191-77349210 | MS.gene030033:CDS | 55.0% |
| !! | CAGCTAAGAAGAGCACCGAC+CGG | - | chr5.2:77349190-77349209 | MS.gene030033:CDS | 55.0% |
| !! | CTGTTTCTGGAAGTGGAGCG+TGG | - | chr5.2:77347708-77347727 | MS.gene030033:intron | 55.0% |
| AATGAAGCTGGGCCTCCCCA+AGG | + | chr5.2:77347371-77347390 | None:intergenic | 60.0% | |
| ACAGGTACCACAGACAGGCC+CGG | + | chr5.2:77347417-77347436 | None:intergenic | 60.0% | |
| ATGAGGCCCATACCTTGGGG+AGG | - | chr5.2:77347356-77347375 | MS.gene030033:intron | 60.0% | |
| GAGCTGTTTGCACCCCCCAA+GGG | - | chr5.2:77347391-77347410 | MS.gene030033:intron | 60.0% | |
| TGAGCTGTTTGCACCCCCCA+AGG | - | chr5.2:77347390-77347409 | MS.gene030033:intron | 60.0% | |
| !! | GAGCACCGACCGGGATAATG+AGG | - | chr5.2:77349200-77349219 | MS.gene030033:CDS | 60.0% |
| AGCTGGGCCTCCCCAAGGTA+TGG | + | chr5.2:77347366-77347385 | None:intergenic | 65.0% | |
| GCTGGGCCTCCCCAAGGTAT+GGG | + | chr5.2:77347365-77347384 | None:intergenic | 65.0% | |
| TCTGGAAGTGGAGCGTGGGC+TGG | - | chr5.2:77347713-77347732 | MS.gene030033:intron | 65.0% | |
| TGTTTGCACCCCCCAAGGGC+CGG | - | chr5.2:77347395-77347414 | MS.gene030033:intron | 65.0% | |
| ACAGACAGGCCCGGCCCTTG+GGG | + | chr5.2:77347408-77347427 | None:intergenic | 70.0% | |
| CACAGACAGGCCCGGCCCTT+GGG | + | chr5.2:77347409-77347428 | None:intergenic | 70.0% | |
| GTTTGCACCCCCCAAGGGCC+GGG | - | chr5.2:77347396-77347415 | MS.gene030033:intron | 70.0% | |
| AGACAGGCCCGGCCCTTGGG+GGG | + | chr5.2:77347406-77347425 | None:intergenic | 75.0% | |
| CAGACAGGCCCGGCCCTTGG+GGG | + | chr5.2:77347407-77347426 | None:intergenic | 75.0% | |
| CCAAGGGCCGGGCCTGTCTG+TGG | - | chr5.2:77347407-77347426 | MS.gene030033:intron | 75.0% | |
| CCACAGACAGGCCCGGCCCT+TGG | + | chr5.2:77347410-77347429 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 77345999 | 77349548 | 77345999 | ID=MS.gene030033 |
| chr5.2 | mRNA | 77345999 | 77349548 | 77345999 | ID=MS.gene030033.t1;Parent=MS.gene030033 |
| chr5.2 | exon | 77349534 | 77349548 | 77349534 | ID=MS.gene030033.t1.exon1;Parent=MS.gene030033.t1 |
| chr5.2 | CDS | 77349534 | 77349548 | 77349534 | ID=cds.MS.gene030033.t1;Parent=MS.gene030033.t1 |
| chr5.2 | exon | 77349144 | 77349266 | 77349144 | ID=MS.gene030033.t1.exon2;Parent=MS.gene030033.t1 |
| chr5.2 | CDS | 77349144 | 77349266 | 77349144 | ID=cds.MS.gene030033.t1;Parent=MS.gene030033.t1 |
| chr5.2 | exon | 77347813 | 77347881 | 77347813 | ID=MS.gene030033.t1.exon3;Parent=MS.gene030033.t1 |
| chr5.2 | CDS | 77347813 | 77347881 | 77347813 | ID=cds.MS.gene030033.t1;Parent=MS.gene030033.t1 |
| chr5.2 | exon | 77347635 | 77347723 | 77347635 | ID=MS.gene030033.t1.exon4;Parent=MS.gene030033.t1 |
| chr5.2 | CDS | 77347635 | 77347723 | 77347635 | ID=cds.MS.gene030033.t1;Parent=MS.gene030033.t1 |
| chr5.2 | exon | 77347436 | 77347544 | 77347436 | ID=MS.gene030033.t1.exon5;Parent=MS.gene030033.t1 |
| chr5.2 | CDS | 77347436 | 77347544 | 77347436 | ID=cds.MS.gene030033.t1;Parent=MS.gene030033.t1 |
| chr5.2 | exon | 77347137 | 77347205 | 77347137 | ID=MS.gene030033.t1.exon6;Parent=MS.gene030033.t1 |
| chr5.2 | CDS | 77347137 | 77347205 | 77347137 | ID=cds.MS.gene030033.t1;Parent=MS.gene030033.t1 |
| chr5.2 | exon | 77346940 | 77347050 | 77346940 | ID=MS.gene030033.t1.exon7;Parent=MS.gene030033.t1 |
| chr5.2 | CDS | 77346940 | 77347050 | 77346940 | ID=cds.MS.gene030033.t1;Parent=MS.gene030033.t1 |
| chr5.2 | exon | 77345999 | 77346832 | 77345999 | ID=MS.gene030033.t1.exon8;Parent=MS.gene030033.t1 |
| chr5.2 | CDS | 77345999 | 77346832 | 77345999 | ID=cds.MS.gene030033.t1;Parent=MS.gene030033.t1 |
| Gene Sequence |
| Protein sequence |
