Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038323.t1 | AET00383.1 | 94.8 | 520 | 25 | 1 | 1 | 518 | 30 | 549 | 3.00E-246 | 860.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038323.t1 | Q84WU2 | 56.4 | 257 | 107 | 4 | 2 | 254 | 560 | 815 | 3.7e-75 | 283.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038323.t1 | G7KD55 | 94.8 | 520 | 25 | 1 | 1 | 518 | 30 | 549 | 2.2e-246 | 860.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038323.t1 | MTR_5g091410 | 94.808 | 520 | 25 | 1 | 1 | 518 | 30 | 549 | 0.0 | 928 |
| MS.gene038323.t1 | MTR_5g091450 | 60.067 | 601 | 153 | 9 | 5 | 518 | 192 | 792 | 0.0 | 640 |
| MS.gene038323.t1 | MTR_5g091430 | 60.545 | 550 | 185 | 5 | 1 | 518 | 1 | 550 | 0.0 | 614 |
| MS.gene038323.t1 | MTR_5g091180 | 60.155 | 517 | 160 | 8 | 2 | 490 | 202 | 700 | 0.0 | 529 |
| MS.gene038323.t1 | MTR_5g091550 | 67.361 | 288 | 67 | 4 | 6 | 267 | 183 | 469 | 1.90e-118 | 357 |
| MS.gene038323.t1 | MTR_5g091550 | 67.361 | 288 | 67 | 4 | 6 | 267 | 178 | 464 | 2.11e-118 | 357 |
| MS.gene038323.t1 | MTR_5g086700 | 71.318 | 258 | 70 | 3 | 5 | 258 | 569 | 826 | 1.77e-115 | 367 |
| MS.gene038323.t1 | MTR_5g086700 | 71.318 | 258 | 70 | 3 | 5 | 258 | 569 | 826 | 1.86e-115 | 367 |
| MS.gene038323.t1 | MTR_3g079840 | 67.829 | 258 | 79 | 3 | 5 | 258 | 564 | 821 | 5.61e-112 | 358 |
| MS.gene038323.t1 | MTR_3g079840 | 67.829 | 258 | 79 | 3 | 5 | 258 | 565 | 822 | 5.88e-112 | 357 |
| MS.gene038323.t1 | MTR_5g091530 | 64.552 | 268 | 73 | 2 | 5 | 270 | 120 | 367 | 1.41e-111 | 336 |
| MS.gene038323.t1 | MTR_1g041240 | 59.073 | 259 | 101 | 3 | 5 | 258 | 566 | 824 | 1.62e-90 | 300 |
| MS.gene038323.t1 | MTR_1g041240 | 59.073 | 259 | 101 | 3 | 5 | 258 | 565 | 823 | 1.75e-90 | 300 |
| MS.gene038323.t1 | MTR_1g041240 | 59.073 | 259 | 101 | 3 | 5 | 258 | 564 | 822 | 1.82e-90 | 300 |
| MS.gene038323.t1 | MTR_5g091460 | 79.545 | 44 | 9 | 0 | 1 | 44 | 1 | 44 | 3.44e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038323.t1 | AT5G06600 | 57.037 | 270 | 110 | 4 | 2 | 267 | 562 | 829 | 1.84e-85 | 284 |
| MS.gene038323.t1 | AT5G06600 | 57.037 | 270 | 110 | 4 | 2 | 267 | 562 | 829 | 1.05e-84 | 284 |
| MS.gene038323.t1 | AT5G06600 | 57.037 | 270 | 110 | 4 | 2 | 267 | 561 | 828 | 1.05e-84 | 284 |
| MS.gene038323.t1 | AT3G11910 | 55.939 | 261 | 110 | 4 | 2 | 258 | 560 | 819 | 1.45e-84 | 283 |
| MS.gene038323.t1 | AT3G11910 | 55.939 | 261 | 110 | 4 | 2 | 258 | 560 | 819 | 1.45e-84 | 283 |
| MS.gene038323.t1 | AT3G11910 | 55.939 | 261 | 110 | 4 | 2 | 258 | 559 | 818 | 1.58e-84 | 283 |
| MS.gene038323.t1 | AT3G11910 | 55.939 | 261 | 110 | 4 | 2 | 258 | 559 | 818 | 1.58e-84 | 283 |
Find 85 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCAATCTCAACAATTT+TGG | 0.130984 | 5.4:+72148951 | None:intergenic |
| TGACGAATTAAAACTGTTTC+TGG | 0.158531 | 5.4:-72150619 | MS.gene038323:CDS |
| TACCGTAGCTCCTCTCTTTC+AGG | 0.194717 | 5.4:+72150421 | None:intergenic |
| CAGCTCAATTCCAGCGCTTT+TGG | 0.211067 | 5.4:-72150962 | MS.gene038323:CDS |
| ACAGGAAAACACTTGACTTT+TGG | 0.284130 | 5.4:+72149949 | None:intergenic |
| AGCAAATACATGAATCAAAA+TGG | 0.300931 | 5.4:+72148766 | None:intergenic |
| CCTCCCTGATCAACTTCTTC+AGG | 0.313808 | 5.4:-72149355 | MS.gene038323:CDS |
| GAAAATGTTGCTAAAGAGTT+TGG | 0.314455 | 5.4:-72150990 | MS.gene038323:CDS |
| TCTATATCTGAGGGACAAAA+AGG | 0.328583 | 5.4:+72149588 | None:intergenic |
| AATGTTAATTTCTTCTCAAC+AGG | 0.339875 | 5.4:+72149931 | None:intergenic |
| GAAATTTGCTGATCAAATTC+CGG | 0.348773 | 5.4:-72148848 | MS.gene038323:CDS |
| ACAAAGTTAAATAAATTTGC+TGG | 0.349648 | 5.4:-72150261 | MS.gene038323:CDS |
| GAAGACCTTGCAGAACAAAT+TGG | 0.355559 | 5.4:-72151792 | MS.gene038323:CDS |
| TTCCAATGATGCTTCATCTT+CGG | 0.360850 | 5.4:+72149563 | None:intergenic |
| ATTAAAACTGTTTCTGGAAG+TGG | 0.395656 | 5.4:-72150613 | MS.gene038323:CDS |
| TCCGGAGCACGAAACTGAAT+TGG | 0.406924 | 5.4:-72148830 | MS.gene038323:CDS |
| CCCACTGCACCACTCAATAT+CGG | 0.409594 | 5.4:-72150481 | MS.gene038323:CDS |
| TCCAATTCAGTTTCGTGCTC+CGG | 0.414367 | 5.4:+72148829 | None:intergenic |
| ATCAACTTCTTCAGGAATTG+AGG | 0.415620 | 5.4:-72149347 | MS.gene038323:CDS |
| TCACTTGTACACTATTATAA+AGG | 0.420395 | 5.4:-72151964 | MS.gene038323:intron |
| CAAGAGAGTTGAGTTCTGTT+TGG | 0.420830 | 5.4:+72149028 | None:intergenic |
| ATCCGAAGATGAAGCATCAT+TGG | 0.433069 | 5.4:-72149565 | MS.gene038323:CDS |
| AATTCCTGAAGAAGTTGATC+AGG | 0.436725 | 5.4:+72149351 | None:intergenic |
| TCCATGTATGAAAGAACATT+AGG | 0.441990 | 5.4:+72149740 | None:intergenic |
| TCCTAATGTTCTTTCATACA+TGG | 0.442035 | 5.4:-72149741 | MS.gene038323:CDS |
| TGCAATCGACAAAGTTATAT+CGG | 0.444376 | 5.4:-72149418 | MS.gene038323:CDS |
| CCGTTCTATGGCAGTTATGC+TGG | 0.448933 | 5.4:-72150327 | MS.gene038323:intron |
| CCGGGATAATGAGGAATTGA+AGG | 0.460597 | 5.4:-72149097 | MS.gene038323:CDS |
| GTTGTTAGATCTTGATGATA+TGG | 0.461546 | 5.4:-72149460 | MS.gene038323:CDS |
| TGAAGAGATCGAACTTTATG+AGG | 0.464839 | 5.4:-72150226 | MS.gene038323:intron |
| AAATGGAGGGTTTGCCCTCA+AGG | 0.477451 | 5.4:+72148783 | None:intergenic |
| TCAACTTCTTCAGGAATTGA+GGG | 0.478362 | 5.4:-72149346 | MS.gene038323:CDS |
| GAGAGTTGAGTTCTGTTTGG+TGG | 0.479747 | 5.4:+72149031 | None:intergenic |
| TAAAGTTCGATCTCTTCATC+AGG | 0.486377 | 5.4:+72150231 | None:intergenic |
| GCCGAGATGGTCGACATGTA+TGG | 0.498312 | 5.4:+72150919 | None:intergenic |
| AACTTTGTTAAGATTTCTGA+TGG | 0.511941 | 5.4:+72150276 | None:intergenic |
| CATTTCCAATTTGTTCTGCA+AGG | 0.515390 | 5.4:+72151787 | None:intergenic |
| TTGGTTGTAAAATTTAAACT+AGG | 0.518550 | 5.4:-72149303 | MS.gene038323:CDS |
| CTTGATCAATAGCGAGGCGA+TGG | 0.523992 | 5.4:+72148878 | None:intergenic |
| AGCTAAGAAGAGCATCGACC+GGG | 0.526029 | 5.4:-72149115 | MS.gene038323:CDS |
| TCCGATATTGAGTGGTGCAG+TGG | 0.533670 | 5.4:+72150480 | None:intergenic |
| TCTGGAAGTGGAGCGTGGGC+TGG | 0.536325 | 5.4:-72150601 | MS.gene038323:intron |
| ATGGTAGATGTGGATGTCAT+TGG | 0.537197 | 5.4:-72149441 | MS.gene038323:CDS |
| GAGCATCGACCGGGATAATG+AGG | 0.540850 | 5.4:-72149106 | MS.gene038323:CDS |
| TTTCCCATATCCAAAAGCGC+TGG | 0.542428 | 5.4:+72150952 | None:intergenic |
| ATCGACAAAGTTATATCGGA+AGG | 0.546426 | 5.4:-72149414 | MS.gene038323:CDS |
| GGAATATGTGTACAATCGCC+AGG | 0.551328 | 5.4:-72149720 | MS.gene038323:intron |
| GAAGGTCTACAAAACCTTGA+GGG | 0.554427 | 5.4:-72148797 | MS.gene038323:CDS |
| CAAAAGCGCTGGAATTGAGC+TGG | 0.558135 | 5.4:+72150963 | None:intergenic |
| CCTTCAATTCCTCATTATCC+CGG | 0.561287 | 5.4:+72149097 | None:intergenic |
| ATCTTCGGATTCTATATCTG+AGG | 0.562134 | 5.4:+72149578 | None:intergenic |
| CTGTTTCTGGAAGTGGAGCG+TGG | 0.563550 | 5.4:-72150606 | MS.gene038323:CDS |
| CCGATATTGAGTGGTGCAGT+GGG | 0.565192 | 5.4:+72150481 | None:intergenic |
| ACCATACATGTCGACCATCT+CGG | 0.571073 | 5.4:-72150920 | MS.gene038323:CDS |
| TCTTCGGATTCTATATCTGA+GGG | 0.574584 | 5.4:+72149579 | None:intergenic |
| CAGCTAAGAAGAGCATCGAC+CGG | 0.575298 | 5.4:-72149116 | MS.gene038323:CDS |
| CCACTCAATATCGGAGAGGA+TGG | 0.576689 | 5.4:-72150472 | MS.gene038323:CDS |
| ATGTGTGTCAAAAGCCGAGA+TGG | 0.577209 | 5.4:+72150906 | None:intergenic |
| AGTAAACTTCAATGTAGTCA+AGG | 0.582753 | 5.4:-72149268 | MS.gene038323:CDS |
| ACTTGCTCAACAAAATTGAG+TGG | 0.584340 | 5.4:-72149179 | MS.gene038323:CDS |
| GTTATATGATCCTGAAAGAG+AGG | 0.584929 | 5.4:-72150431 | MS.gene038323:CDS |
| TTCTGTTTGGTGGATGTCGA+GGG | 0.586793 | 5.4:+72149041 | None:intergenic |
| CTATGAATGCAGTTAGACAA+TGG | 0.587686 | 5.4:-72149821 | MS.gene038323:intron |
| ATCCTGAAAGAGAGGAGCTA+CGG | 0.592917 | 5.4:-72150423 | MS.gene038323:intron |
| GTTCTGTTTGGTGGATGTCG+AGG | 0.599369 | 5.4:+72149040 | None:intergenic |
| TTGTAGACCTTGACAAAGTG+AGG | 0.603348 | 5.4:-72151749 | MS.gene038323:CDS |
| TCTTGATGATATGGTAGATG+TGG | 0.605563 | 5.4:-72149451 | MS.gene038323:CDS |
| AAATACATGAATCAAAATGG+AGG | 0.606725 | 5.4:+72148769 | None:intergenic |
| AATACATGAATCAAAATGGA+GGG | 0.610120 | 5.4:+72148770 | None:intergenic |
| TGTTTCTGGAAGTGGAGCGT+GGG | 0.613081 | 5.4:-72150605 | MS.gene038323:CDS |
| TGAATTGGAAGGTCATGAGA+AGG | 0.617326 | 5.4:-72148815 | MS.gene038323:CDS |
| TCTATGGCAGTTATGCTGGA+AGG | 0.627842 | 5.4:-72150323 | MS.gene038323:intron |
| GGAAACTCCTCACTTTGTCA+AGG | 0.635577 | 5.4:+72151742 | None:intergenic |
| ATTCCTGAAGAAGTTGATCA+GGG | 0.638559 | 5.4:+72149352 | None:intergenic |
| CCATCCTCTCCGATATTGAG+TGG | 0.642904 | 5.4:+72150472 | None:intergenic |
| AGAAGGTCTACAAAACCTTG+AGG | 0.643862 | 5.4:-72148798 | MS.gene038323:CDS |
| GAGCACGAAACTGAATTGGA+AGG | 0.650443 | 5.4:-72148826 | MS.gene038323:CDS |
| TCGACAAAGTTATATCGGAA+GGG | 0.656260 | 5.4:-72149413 | MS.gene038323:CDS |
| ATGAAAGAACATTAGGATAG+CGG | 0.658992 | 5.4:+72149747 | None:intergenic |
| ACTTGACTTGATCAATAGCG+AGG | 0.661642 | 5.4:+72148872 | None:intergenic |
| ACAATTGAAAGAGCTTCACA+AGG | 0.683760 | 5.4:-72150643 | MS.gene038323:CDS |
| AATTAATGATATGATAGACG+AGG | 0.692673 | 5.4:-72149487 | MS.gene038323:CDS |
| ATTAACATTTGAAGATAACG+AGG | 0.703915 | 5.4:-72149917 | MS.gene038323:intron |
| TGCACCACTCAATATCGGAG+AGG | 0.716904 | 5.4:-72150476 | MS.gene038323:CDS |
| CCTGAAGAAGTTGATCAGGG+AGG | 0.753049 | 5.4:+72149355 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGAAATTAACATTTTAAT+TGG | - | chr5.4:72150888-72150907 | MS.gene038323:intron | 10.0% |
| !! | AAGATATTATAATACTTCTT+AGG | - | chr5.4:72148929-72148948 | MS.gene038323:CDS | 15.0% |
| !! | CTTTATAAAATTGAATTCTA+AGG | + | chr5.4:72149290-72149309 | None:intergenic | 15.0% |
| !!! | ATTGATTTTATGTGATATAT+AGG | - | chr5.4:72149743-72149762 | MS.gene038323:CDS | 15.0% |
| !! | ACAAAGTTAAATAAATTTGC+TGG | - | chr5.4:72150494-72150513 | MS.gene038323:intron | 20.0% |
| !! | ACAAATAAAACAACATATCT+AGG | + | chr5.4:72148834-72148853 | None:intergenic | 20.0% |
| !! | ATAAATTATGAAGCTTAAAG+CGG | + | chr5.4:72149942-72149961 | None:intergenic | 20.0% |
| !! | ATATTATAATACTTCTTAGG+TGG | - | chr5.4:72148932-72148951 | MS.gene038323:CDS | 20.0% |
| !! | CAAATAAAACAACATATCTA+GGG | + | chr5.4:72148833-72148852 | None:intergenic | 20.0% |
| !! | GACAAACTTCATTATTATAT+AGG | - | chr5.4:72150243-72150262 | MS.gene038323:CDS | 20.0% |
| !! | TTCAATCCTTACTATTTATT+AGG | + | chr5.4:72149173-72149192 | None:intergenic | 20.0% |
| !! | TTGGTTGTAAAATTTAAACT+AGG | - | chr5.4:72151452-72151471 | MS.gene038323:intron | 20.0% |
| !!! | CTAAAAGTATGTTTATAAGT+AGG | - | chr5.4:72149252-72149271 | MS.gene038323:CDS | 20.0% |
| !!! | CTACTTATAAACATACTTTT+AGG | + | chr5.4:72149254-72149273 | None:intergenic | 20.0% |
| !!! | CTTCATAATTTATGACTTTT+TGG | - | chr5.4:72149949-72149968 | MS.gene038323:CDS | 20.0% |
| !!! | TACAACCAAATCTTTTTTAA+AGG | + | chr5.4:72151441-72151460 | None:intergenic | 20.0% |
| !!! | TATAAAATTGAATTCTAAGG+TGG | + | chr5.4:72149287-72149306 | None:intergenic | 20.0% |
| ! | AACTTACGAAAATAACAGAT+GGG | + | chr5.4:72149708-72149727 | None:intergenic | 25.0% |
| ! | AACTTTGTTAAGATTTCTGA+TGG | + | chr5.4:72150482-72150501 | None:intergenic | 25.0% |
| ! | AATACATTTGATGTCAACTA+AGG | + | chr5.4:72150407-72150426 | None:intergenic | 25.0% |
| ! | AATGTTAATTTCTTCTCAAC+AGG | + | chr5.4:72150827-72150846 | None:intergenic | 25.0% |
| ! | AATTAATGATATGATAGACG+AGG | - | chr5.4:72151268-72151287 | MS.gene038323:intron | 25.0% |
| ! | AGAGGAAGAAAAAAAACTAT+GGG | + | chr5.4:72149977-72149996 | None:intergenic | 25.0% |
| ! | ATTAACATTTGAAGATAACG+AGG | - | chr5.4:72150838-72150857 | MS.gene038323:intron | 25.0% |
| ! | TAAATTATGAAGCTTAAAGC+GGG | + | chr5.4:72149941-72149960 | None:intergenic | 25.0% |
| ! | TAGAAACAGGATAAGTATAA+GGG | + | chr5.4:72151108-72151127 | None:intergenic | 25.0% |
| ! | TAGAGGAAGAAAAAAAACTA+TGG | + | chr5.4:72149978-72149997 | None:intergenic | 25.0% |
| ! | TCACTTGTACACTATTATAA+AGG | - | chr5.4:72148791-72148810 | MS.gene038323:CDS | 25.0% |
| ! | TGCTCTATATAATCACATTA+GGG | + | chr5.4:72149148-72149167 | None:intergenic | 25.0% |
| ! | TTGAATCTAATGATCTGTAA+AGG | - | chr5.4:72150717-72150736 | MS.gene038323:intron | 25.0% |
| !! | CCATCTTAGATTTTTGTATT+CGG | + | chr5.4:72149323-72149342 | None:intergenic | 25.0% |
| !! | TATCGCCTTTAAAAAAGATT+TGG | - | chr5.4:72151433-72151452 | MS.gene038323:intron | 25.0% |
| !! | TTTTAAGCCATATCTAATGT+GGG | + | chr5.4:72149445-72149464 | None:intergenic | 25.0% |
| !!! | ACCTACAATTTTAGTCAAAA+TGG | + | chr5.4:72150089-72150108 | None:intergenic | 25.0% |
| !!! | CCTACAATTTTAGTCAAAAT+GGG | + | chr5.4:72150088-72150107 | None:intergenic | 25.0% |
| !!! | TATTTTAGATGCATCTTCAT+AGG | - | chr5.4:72149532-72149551 | MS.gene038323:CDS | 25.0% |
| !!! | TGTGATTTTAACATATGTTG+CGG | - | chr5.4:72150370-72150389 | MS.gene038323:intron | 25.0% |
| !!! | TTTTGACTAAAATTGTAGGT+TGG | - | chr5.4:72150089-72150108 | MS.gene038323:intron | 25.0% |
| !!! | TTTTTAAGCCATATCTAATG+TGG | + | chr5.4:72149446-72149465 | None:intergenic | 25.0% |
| AAAAATCACAATGCTCTAGT+TGG | - | chr5.4:72149587-72149606 | MS.gene038323:CDS | 30.0% | |
| AACCTCAAAAAGAAAATACC+TGG | + | chr5.4:72151056-72151075 | None:intergenic | 30.0% | |
| ACTACAGATCATAGAGAAAT+TGG | + | chr5.4:72150051-72150070 | None:intergenic | 30.0% | |
| AGAAACAGGATAAGTATAAG+GGG | + | chr5.4:72151107-72151126 | None:intergenic | 30.0% | |
| AGTAAACTTCAATGTAGTCA+AGG | - | chr5.4:72151487-72151506 | MS.gene038323:intron | 30.0% | |
| ATATGAGACTCTCAACAAAA+AGG | + | chr5.4:72149217-72149236 | None:intergenic | 30.0% | |
| ATCATAGTCAATCCAAGATT+TGG | - | chr5.4:72149344-72149363 | MS.gene038323:CDS | 30.0% | |
| ATGAAAGAACATTAGGATAG+CGG | + | chr5.4:72151011-72151030 | None:intergenic | 30.0% | |
| CAACTTACGAAAATAACAGA+TGG | + | chr5.4:72149709-72149728 | None:intergenic | 30.0% | |
| CCGAATACAAAAATCTAAGA+TGG | - | chr5.4:72149320-72149339 | MS.gene038323:CDS | 30.0% | |
| CTAGAAACAGGATAAGTATA+AGG | + | chr5.4:72151109-72151128 | None:intergenic | 30.0% | |
| GAAAATGTTGCTAAAGAGTT+TGG | - | chr5.4:72149765-72149784 | MS.gene038323:CDS | 30.0% | |
| GTGCTCTATATAATCACATT+AGG | + | chr5.4:72149149-72149168 | None:intergenic | 30.0% | |
| GTTTGAGAAACTCGAAAAAT+TGG | - | chr5.4:72151601-72151620 | MS.gene038323:intron | 30.0% | |
| TCAAATGTATTTCCGTTCTA+TGG | - | chr5.4:72150416-72150435 | MS.gene038323:intron | 30.0% | |
| TCCATGTATGAAAGAACATT+AGG | + | chr5.4:72151018-72151037 | None:intergenic | 30.0% | |
| TCCTAATGTTCTTTCATACA+TGG | - | chr5.4:72151014-72151033 | MS.gene038323:intron | 30.0% | |
| TGACGAATTAAAACTGTTTC+TGG | - | chr5.4:72150136-72150155 | MS.gene038323:intron | 30.0% | |
| TGCAATCGACAAAGTTATAT+CGG | - | chr5.4:72151337-72151356 | MS.gene038323:intron | 30.0% | |
| TTAACATATGTTGCGGTAAA+AGG | - | chr5.4:72150377-72150396 | MS.gene038323:intron | 30.0% | |
| ! | AGCTTCAATCTCAACAATTT+TGG | + | chr5.4:72151807-72151826 | None:intergenic | 30.0% |
| ! | CTTATACTTATCCTGTTTCT+AGG | - | chr5.4:72151107-72151126 | MS.gene038323:intron | 30.0% |
| ! | GTTGTTAGATCTTGATGATA+TGG | - | chr5.4:72151295-72151314 | MS.gene038323:intron | 30.0% |
| ! | TTTTGTTGAGAGTCTCATAT+TGG | - | chr5.4:72149217-72149236 | MS.gene038323:CDS | 30.0% |
| ! | TTTTTATGAAATTTGGCAGC+AGG | + | chr5.4:72150594-72150613 | None:intergenic | 30.0% |
| !! | AAAATTGAATTCTAAGGTGG+AGG | + | chr5.4:72149284-72149303 | None:intergenic | 30.0% |
| !! | AAATTGAATTCTAAGGTGGA+GGG | + | chr5.4:72149283-72149302 | None:intergenic | 30.0% |
| !! | ATTAAAACTGTTTCTGGAAG+TGG | - | chr5.4:72150142-72150161 | MS.gene038323:intron | 30.0% |
| !! | GAAATTTGCTGATCAAATTC+CGG | - | chr5.4:72151907-72151926 | MS.gene038323:intron | 30.0% |
| !! | TGAATGTTGTTTCCTTGTTT+AGG | - | chr5.4:72151142-72151161 | MS.gene038323:intron | 30.0% |
| !!! | CATCTGTTATTTTCGTAAGT+TGG | - | chr5.4:72149707-72149726 | MS.gene038323:intron | 30.0% |
| !!! | CCCATTTTGACTAAAATTGT+AGG | - | chr5.4:72150085-72150104 | MS.gene038323:intron | 30.0% |
| ACAATTGAAAGAGCTTCACA+AGG | - | chr5.4:72150112-72150131 | MS.gene038323:intron | 35.0% | |
| ACTTGCTCAACAAAATTGAG+TGG | - | chr5.4:72151576-72151595 | MS.gene038323:intron | 35.0% | |
| AGCACGCCTAATAAATAGTA+AGG | - | chr5.4:72149164-72149183 | MS.gene038323:CDS | 35.0% | |
| ATAGTCAATCCAAGATTTGG+TGG | - | chr5.4:72149347-72149366 | MS.gene038323:CDS | 35.0% | |
| ATCAACTTCTTCAGGAATTG+AGG | - | chr5.4:72151408-72151427 | MS.gene038323:intron | 35.0% | |
| ATCGACAAAGTTATATCGGA+AGG | - | chr5.4:72151341-72151360 | MS.gene038323:intron | 35.0% | |
| ATCTTCGGATTCTATATCTG+AGG | + | chr5.4:72151180-72151199 | None:intergenic | 35.0% | |
| ATTTCTTAGTATGTGCCAAC+CGG | + | chr5.4:72150876-72150895 | None:intergenic | 35.0% | |
| CATGCTTGAAAAACTACAAG+GGG | - | chr5.4:72151775-72151794 | MS.gene038323:CDS | 35.0% | |
| CCATGCTTGAAAAACTACAA+GGG | - | chr5.4:72151774-72151793 | MS.gene038323:CDS | 35.0% | |
| CTAATTTCCTGCACAACAAT+AGG | + | chr5.4:72150779-72150798 | None:intergenic | 35.0% | |
| CTATGAATGCAGTTAGACAA+TGG | - | chr5.4:72150934-72150953 | MS.gene038323:CDS | 35.0% | |
| GACAAAAAGGAACCTAAACA+AGG | + | chr5.4:72151157-72151176 | None:intergenic | 35.0% | |
| GTTATATGATCCTGAAAGAG+AGG | - | chr5.4:72150324-72150343 | MS.gene038323:intron | 35.0% | |
| TAAAGTTCGATCTCTTCATC+AGG | + | chr5.4:72150527-72150546 | None:intergenic | 35.0% | |
| TAATCAATTCACAACCAACC+TGG | + | chr5.4:72149499-72149518 | None:intergenic | 35.0% | |
| TCAACTTCTTCAGGAATTGA+GGG | - | chr5.4:72151409-72151428 | MS.gene038323:intron | 35.0% | |
| TCATCGTTACTCTCTTTGAT+TGG | - | chr5.4:72149074-72149093 | MS.gene038323:CDS | 35.0% | |
| TCGACAAAGTTATATCGGAA+GGG | - | chr5.4:72151342-72151361 | MS.gene038323:intron | 35.0% | |
| TCTATATCTGAGGGACAAAA+AGG | + | chr5.4:72151170-72151189 | None:intergenic | 35.0% | |
| TCTTCGGATTCTATATCTGA+GGG | + | chr5.4:72151179-72151198 | None:intergenic | 35.0% | |
| TGAAGAGATCGAACTTTATG+AGG | - | chr5.4:72150529-72150548 | MS.gene038323:intron | 35.0% | |
| TTCAAGATAAGCCTAGAAAC+AGG | + | chr5.4:72151121-72151140 | None:intergenic | 35.0% | |
| TTCCAATGATGCTTCATCTT+CGG | + | chr5.4:72151195-72151214 | None:intergenic | 35.0% | |
| TTGAGAGTCTCATATTGGAT+GGG | - | chr5.4:72149222-72149241 | MS.gene038323:CDS | 35.0% | |
| ! | AATTCCTGAAGAAGTTGATC+AGG | + | chr5.4:72151407-72151426 | None:intergenic | 35.0% |
| ! | ACAGGAAAACACTTGACTTT+TGG | + | chr5.4:72150809-72150828 | None:intergenic | 35.0% |
| ! | ATGACTTGTCAGAACAGAAA+GGG | - | chr5.4:72150669-72150688 | MS.gene038323:intron | 35.0% |
| ! | ATTCCTGAAGAAGTTGATCA+GGG | + | chr5.4:72151406-72151425 | None:intergenic | 35.0% |
| ! | CATTTCCAATTTGTTCTGCA+AGG | + | chr5.4:72148971-72148990 | None:intergenic | 35.0% |
| ! | GATTGAAGTGCATTAACTTG+TGG | - | chr5.4:72149186-72149205 | MS.gene038323:CDS | 35.0% |
| ! | TAGTCAATCCAAGATTTGGT+GGG | - | chr5.4:72149348-72149367 | MS.gene038323:CDS | 35.0% |
| ! | TATGACTTGTCAGAACAGAA+AGG | - | chr5.4:72150668-72150687 | MS.gene038323:intron | 35.0% |
| ! | TCTTGATGATATGGTAGATG+TGG | - | chr5.4:72151304-72151323 | MS.gene038323:intron | 35.0% |
| ! | TTTTCAAAGAACACGATGCA+AGG | + | chr5.4:72150635-72150654 | None:intergenic | 35.0% |
| AAAACCACAAGATTCACGTG+AGG | + | chr5.4:72149628-72149647 | None:intergenic | 40.0% | |
| AACGAGGTATAGTACATACC+CGG | - | chr5.4:72150854-72150873 | MS.gene038323:intron | 40.0% | |
| AATGTCCAATCTTGAGTGTG+AGG | - | chr5.4:72149406-72149425 | MS.gene038323:CDS | 40.0% | |
| AATTGTGCCTATTGTTGTGC+AGG | - | chr5.4:72150769-72150788 | MS.gene038323:intron | 40.0% | |
| ACATATGTTGCGGTAAAAGG+TGG | - | chr5.4:72150380-72150399 | MS.gene038323:intron | 40.0% | |
| AGAAGGTCTACAAAACCTTG+AGG | - | chr5.4:72151957-72151976 | MS.gene038323:intron | 40.0% | |
| ATGGTAGATGTGGATGTCAT+TGG | - | chr5.4:72151314-72151333 | MS.gene038323:intron | 40.0% | |
| ATGTCCAATCTTGAGTGTGA+GGG | - | chr5.4:72149407-72149426 | MS.gene038323:CDS | 40.0% | |
| CAAGAGAGTTGAGTTCTGTT+TGG | + | chr5.4:72151730-72151749 | None:intergenic | 40.0% | |
| CACTCAAGATTGGACATTTG+AGG | + | chr5.4:72149404-72149423 | None:intergenic | 40.0% | |
| CCTTCAATTCCTCATTATCC+CGG | + | chr5.4:72151661-72151680 | None:intergenic | 40.0% | |
| GAAGACCTTGCAGAACAAAT+TGG | - | chr5.4:72148963-72148982 | MS.gene038323:CDS | 40.0% | |
| GAAGGTCTACAAAACCTTGA+GGG | - | chr5.4:72151958-72151977 | MS.gene038323:intron | 40.0% | |
| GAGATCGAACTTTATGAGGT+TGG | - | chr5.4:72150533-72150552 | MS.gene038323:intron | 40.0% | |
| GCCATGCTTGAAAAACTACA+AGG | - | chr5.4:72151773-72151792 | MS.gene038323:CDS | 40.0% | |
| GTAGAGTCCCACATTAGATA+TGG | - | chr5.4:72149435-72149454 | MS.gene038323:CDS | 40.0% | |
| GTCTCATATTGGATGGGATA+TGG | - | chr5.4:72149228-72149247 | MS.gene038323:CDS | 40.0% | |
| GTTGAGAGTCTCATATTGGA+TGG | - | chr5.4:72149221-72149240 | MS.gene038323:CDS | 40.0% | |
| TGAATTGGAAGGTCATGAGA+AGG | - | chr5.4:72151940-72151959 | MS.gene038323:intron | 40.0% | |
| TGAGACTCTCAACAAAAAGG+TGG | + | chr5.4:72149214-72149233 | None:intergenic | 40.0% | |
| TTGTAGACCTTGACAAAGTG+AGG | - | chr5.4:72149006-72149025 | MS.gene038323:CDS | 40.0% | |
| TTTCTTAGTATGTGCCAACC+GGG | + | chr5.4:72150875-72150894 | None:intergenic | 40.0% | |
| ! | AATTCCAGCGCTTTTGGATA+TGG | - | chr5.4:72149799-72149818 | MS.gene038323:CDS | 40.0% |
| ! | ACTTGACTTGATCAATAGCG+AGG | + | chr5.4:72151886-72151905 | None:intergenic | 40.0% |
| ! | ATCCGAAGATGAAGCATCAT+TGG | - | chr5.4:72151190-72151209 | MS.gene038323:intron | 40.0% |
| ! | ATTCCAGCGCTTTTGGATAT+GGG | - | chr5.4:72149800-72149819 | MS.gene038323:CDS | 40.0% |
| ! | CGCCAGGTATTTTCTTTTTG+AGG | - | chr5.4:72151051-72151070 | MS.gene038323:intron | 40.0% |
| ! | GACGTCGTTTAACGTTTTCA+AGG | - | chr5.4:72149049-72149068 | MS.gene038323:CDS | 40.0% |
| ! | TTTGGTGGGTCATTTGGTAT+CGG | - | chr5.4:72149362-72149381 | MS.gene038323:CDS | 40.0% |
| !!! | CCCTTGTAGTTTTTCAAGCA+TGG | + | chr5.4:72151777-72151796 | None:intergenic | 40.0% |
| ACCATACATGTCGACCATCT+CGG | - | chr5.4:72149835-72149854 | MS.gene038323:intron | 45.0% | |
| AGGTATAGTACATACCCGGT+TGG | - | chr5.4:72150858-72150877 | MS.gene038323:intron | 45.0% | |
| ATCCTGAAAGAGAGGAGCTA+CGG | - | chr5.4:72150332-72150351 | MS.gene038323:intron | 45.0% | |
| ATGTGTGTCAAAAGCCGAGA+TGG | + | chr5.4:72149852-72149871 | None:intergenic | 45.0% | |
| CATACCCTCACACTCAAGAT+TGG | + | chr5.4:72149414-72149433 | None:intergenic | 45.0% | |
| CATACCTCACGTGAATCTTG+TGG | - | chr5.4:72149621-72149640 | MS.gene038323:intron | 45.0% | |
| CATCTCTTACCTTACAAGCC+AGG | - | chr5.4:72149478-72149497 | MS.gene038323:CDS | 45.0% | |
| CCAAATGACCCACCAAATCT+TGG | + | chr5.4:72149359-72149378 | None:intergenic | 45.0% | |
| CCAGCATAACTGCCATAGAA+CGG | + | chr5.4:72150431-72150450 | None:intergenic | 45.0% | |
| CCGGGATAATGAGGAATTGA+AGG | - | chr5.4:72151658-72151677 | MS.gene038323:intron | 45.0% | |
| CTTCCTCTAAATGCTTGCGA+GGG | - | chr5.4:72149989-72150008 | MS.gene038323:intron | 45.0% | |
| GAGAGTTGAGTTCTGTTTGG+TGG | + | chr5.4:72151727-72151746 | None:intergenic | 45.0% | |
| GAGCACGAAACTGAATTGGA+AGG | - | chr5.4:72151929-72151948 | MS.gene038323:intron | 45.0% | |
| GGAAACTCCTCACTTTGTCA+AGG | + | chr5.4:72149016-72149035 | None:intergenic | 45.0% | |
| GGAATATGTGTACAATCGCC+AGG | - | chr5.4:72151035-72151054 | MS.gene038323:intron | 45.0% | |
| TCCAATTCAGTTTCGTGCTC+CGG | + | chr5.4:72151929-72151948 | None:intergenic | 45.0% | |
| TCTATGGCAGTTATGCTGGA+AGG | - | chr5.4:72150432-72150451 | MS.gene038323:CDS | 45.0% | |
| TCTTACCTTACAAGCCAGGT+TGG | - | chr5.4:72149482-72149501 | MS.gene038323:CDS | 45.0% | |
| TCTTCCTCTAAATGCTTGCG+AGG | - | chr5.4:72149988-72150007 | MS.gene038323:intron | 45.0% | |
| ! | ATTTGGTATCGGGCGACTTA+AGG | - | chr5.4:72149373-72149392 | MS.gene038323:CDS | 45.0% |
| ! | TTCTGTTTGGTGGATGTCGA+GGG | + | chr5.4:72151717-72151736 | None:intergenic | 45.0% |
| ! | TTGGTGGGTCATTTGGTATC+GGG | - | chr5.4:72149363-72149382 | MS.gene038323:CDS | 45.0% |
| ! | TTTCCCATATCCAAAAGCGC+TGG | + | chr5.4:72149806-72149825 | None:intergenic | 45.0% |
| !! | ACGACGTCTGCTTTTGAACA+CGG | + | chr5.4:72149037-72149056 | None:intergenic | 45.0% |
| !! | CCAAGATTTGGTGGGTCATT+TGG | - | chr5.4:72149356-72149375 | MS.gene038323:CDS | 45.0% |
| !!! | ATTTAAATTTTTATGAAATT+TGG | + | chr5.4:72150601-72150620 | None:intergenic | 5.0% |
| AAATGGAGGGTTTGCCCTCA+AGG | + | chr5.4:72151975-72151994 | None:intergenic | 50.0% | |
| CCACTCAATATCGGAGAGGA+TGG | - | chr5.4:72150283-72150302 | MS.gene038323:CDS | 50.0% | |
| CCATCCTCTCCGATATTGAG+TGG | + | chr5.4:72150286-72150305 | None:intergenic | 50.0% | |
| CCCACTGCACCACTCAATAT+CGG | - | chr5.4:72150274-72150293 | MS.gene038323:CDS | 50.0% | |
| CCGATATTGAGTGGTGCAGT+GGG | + | chr5.4:72150277-72150296 | None:intergenic | 50.0% | |
| CCGTTCTATGGCAGTTATGC+TGG | - | chr5.4:72150428-72150447 | MS.gene038323:CDS | 50.0% | |
| CCTCCCTGATCAACTTCTTC+AGG | - | chr5.4:72151400-72151419 | MS.gene038323:intron | 50.0% | |
| CTTGATCAATAGCGAGGCGA+TGG | + | chr5.4:72151880-72151899 | None:intergenic | 50.0% | |
| TACCGTAGCTCCTCTCTTTC+AGG | + | chr5.4:72150337-72150356 | None:intergenic | 50.0% | |
| TCCGATATTGAGTGGTGCAG+TGG | + | chr5.4:72150278-72150297 | None:intergenic | 50.0% | |
| TCCGGAGCACGAAACTGAAT+TGG | - | chr5.4:72151925-72151944 | MS.gene038323:intron | 50.0% | |
| TGCACCACTCAATATCGGAG+AGG | - | chr5.4:72150279-72150298 | MS.gene038323:CDS | 50.0% | |
| ! | CACAACCAACCTGGCTTGTA+AGG | + | chr5.4:72149490-72149509 | None:intergenic | 50.0% |
| ! | CAGCTCAATTCCAGCGCTTT+TGG | - | chr5.4:72149793-72149812 | MS.gene038323:CDS | 50.0% |
| ! | CCTGAAGAAGTTGATCAGGG+AGG | + | chr5.4:72151403-72151422 | None:intergenic | 50.0% |
| ! | GTTCTGTTTGGTGGATGTCG+AGG | + | chr5.4:72151718-72151737 | None:intergenic | 50.0% |
| !! | AGCTAAGAAGAGCATCGACC+GGG | - | chr5.4:72151640-72151659 | MS.gene038323:intron | 50.0% |
| !! | CAAAAGCGCTGGAATTGAGC+TGG | + | chr5.4:72149795-72149814 | None:intergenic | 50.0% |
| !! | CAGCTAAGAAGAGCATCGAC+CGG | - | chr5.4:72151639-72151658 | MS.gene038323:intron | 50.0% |
| !! | TGTTTCTGGAAGTGGAGCGT+GGG | - | chr5.4:72150150-72150169 | MS.gene038323:intron | 50.0% |
| GCACCCTCGCAAGCATTTAG+AGG | + | chr5.4:72149995-72150014 | None:intergenic | 55.0% | |
| GCCGAGATGGTCGACATGTA+TGG | + | chr5.4:72149839-72149858 | None:intergenic | 55.0% | |
| !! | CTGTTTCTGGAAGTGGAGCG+TGG | - | chr5.4:72150149-72150168 | MS.gene038323:intron | 55.0% |
| !! | GAGCATCGACCGGGATAATG+AGG | - | chr5.4:72151649-72151668 | MS.gene038323:intron | 55.0% |
| TCTGGAAGTGGAGCGTGGGC+TGG | - | chr5.4:72150154-72150173 | MS.gene038323:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 72148780 | 72151997 | 72148780 | ID=MS.gene038323 |
| chr5.4 | mRNA | 72148780 | 72151997 | 72148780 | ID=MS.gene038323.t1;Parent=MS.gene038323 |
| chr5.4 | exon | 72151965 | 72151997 | 72151965 | ID=MS.gene038323.t1.exon1;Parent=MS.gene038323.t1 |
| chr5.4 | CDS | 72151965 | 72151997 | 72151965 | ID=cds.MS.gene038323.t1;Parent=MS.gene038323.t1 |
| chr5.4 | exon | 72151707 | 72151826 | 72151707 | ID=MS.gene038323.t1.exon2;Parent=MS.gene038323.t1 |
| chr5.4 | CDS | 72151707 | 72151826 | 72151707 | ID=cds.MS.gene038323.t1;Parent=MS.gene038323.t1 |
| chr5.4 | exon | 72150890 | 72151012 | 72150890 | ID=MS.gene038323.t1.exon3;Parent=MS.gene038323.t1 |
| chr5.4 | CDS | 72150890 | 72151012 | 72150890 | ID=cds.MS.gene038323.t1;Parent=MS.gene038323.t1 |
| chr5.4 | exon | 72150602 | 72150670 | 72150602 | ID=MS.gene038323.t1.exon4;Parent=MS.gene038323.t1 |
| chr5.4 | CDS | 72150602 | 72150670 | 72150602 | ID=cds.MS.gene038323.t1;Parent=MS.gene038323.t1 |
| chr5.4 | exon | 72150424 | 72150512 | 72150424 | ID=MS.gene038323.t1.exon5;Parent=MS.gene038323.t1 |
| chr5.4 | CDS | 72150424 | 72150512 | 72150424 | ID=cds.MS.gene038323.t1;Parent=MS.gene038323.t1 |
| chr5.4 | exon | 72150227 | 72150335 | 72150227 | ID=MS.gene038323.t1.exon6;Parent=MS.gene038323.t1 |
| chr5.4 | CDS | 72150227 | 72150335 | 72150227 | ID=cds.MS.gene038323.t1;Parent=MS.gene038323.t1 |
| chr5.4 | exon | 72149918 | 72149986 | 72149918 | ID=MS.gene038323.t1.exon7;Parent=MS.gene038323.t1 |
| chr5.4 | CDS | 72149918 | 72149986 | 72149918 | ID=cds.MS.gene038323.t1;Parent=MS.gene038323.t1 |
| chr5.4 | exon | 72149721 | 72149831 | 72149721 | ID=MS.gene038323.t1.exon8;Parent=MS.gene038323.t1 |
| chr5.4 | CDS | 72149721 | 72149831 | 72149721 | ID=cds.MS.gene038323.t1;Parent=MS.gene038323.t1 |
| chr5.4 | exon | 72148780 | 72149613 | 72148780 | ID=MS.gene038323.t1.exon9;Parent=MS.gene038323.t1 |
| chr5.4 | CDS | 72148780 | 72149613 | 72148780 | ID=cds.MS.gene038323.t1;Parent=MS.gene038323.t1 |
| Gene Sequence |
| Protein sequence |
