Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038324.t1 | XP_003617426.1 | 90.9 | 550 | 49 | 1 | 1 | 549 | 1 | 550 | 5.20E-273 | 949.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038324.t1 | Q9FPT1 | 57.0 | 263 | 105 | 5 | 2 | 260 | 562 | 820 | 4.1e-69 | 263.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038324.t1 | G7KD57 | 90.9 | 550 | 49 | 1 | 1 | 549 | 1 | 550 | 3.8e-273 | 949.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038324.t1 | MTR_5g091430 | 90.909 | 550 | 49 | 1 | 1 | 549 | 1 | 550 | 0.0 | 1004 |
| MS.gene038324.t1 | MTR_5g091450 | 62.975 | 605 | 162 | 7 | 4 | 549 | 191 | 792 | 0.0 | 692 |
| MS.gene038324.t1 | MTR_5g091180 | 63.810 | 525 | 162 | 7 | 2 | 522 | 202 | 702 | 0.0 | 584 |
| MS.gene038324.t1 | MTR_5g091410 | 58.258 | 551 | 197 | 6 | 1 | 549 | 30 | 549 | 0.0 | 578 |
| MS.gene038324.t1 | MTR_5g091530 | 60.069 | 288 | 91 | 3 | 4 | 289 | 119 | 384 | 7.39e-106 | 323 |
| MS.gene038324.t1 | MTR_5g091550 | 56.494 | 308 | 121 | 4 | 3 | 301 | 180 | 483 | 9.27e-104 | 321 |
| MS.gene038324.t1 | MTR_5g091550 | 56.494 | 308 | 121 | 4 | 3 | 301 | 175 | 478 | 1.08e-103 | 320 |
| MS.gene038324.t1 | MTR_5g086700 | 65.000 | 260 | 87 | 2 | 4 | 260 | 568 | 826 | 6.64e-100 | 327 |
| MS.gene038324.t1 | MTR_5g086700 | 65.000 | 260 | 87 | 2 | 4 | 260 | 568 | 826 | 9.60e-100 | 326 |
| MS.gene038324.t1 | MTR_3g079840 | 61.538 | 260 | 96 | 2 | 4 | 260 | 564 | 822 | 1.83e-95 | 314 |
| MS.gene038324.t1 | MTR_3g079840 | 61.538 | 260 | 96 | 2 | 4 | 260 | 563 | 821 | 2.08e-95 | 314 |
| MS.gene038324.t1 | MTR_1g041240 | 55.000 | 260 | 112 | 3 | 5 | 260 | 566 | 824 | 1.17e-79 | 271 |
| MS.gene038324.t1 | MTR_1g041240 | 55.000 | 260 | 112 | 3 | 5 | 260 | 565 | 823 | 1.18e-79 | 271 |
| MS.gene038324.t1 | MTR_1g041240 | 55.000 | 260 | 112 | 3 | 5 | 260 | 564 | 822 | 1.22e-79 | 271 |
| MS.gene038324.t1 | MTR_5g091460 | 79.545 | 44 | 9 | 0 | 1 | 44 | 1 | 44 | 9.51e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038324.t1 | AT5G06600 | 62.844 | 218 | 77 | 2 | 2 | 216 | 562 | 778 | 1.81e-79 | 269 |
| MS.gene038324.t1 | AT5G06600 | 63.134 | 217 | 76 | 2 | 2 | 215 | 561 | 776 | 5.93e-79 | 269 |
| MS.gene038324.t1 | AT5G06600 | 63.134 | 217 | 76 | 2 | 2 | 215 | 562 | 777 | 6.47e-79 | 269 |
| MS.gene038324.t1 | AT3G11910 | 56.540 | 237 | 99 | 2 | 2 | 235 | 560 | 795 | 6.57e-78 | 266 |
| MS.gene038324.t1 | AT3G11910 | 56.540 | 237 | 99 | 2 | 2 | 235 | 560 | 795 | 6.57e-78 | 266 |
| MS.gene038324.t1 | AT3G11910 | 56.540 | 237 | 99 | 2 | 2 | 235 | 559 | 794 | 7.27e-78 | 266 |
| MS.gene038324.t1 | AT3G11910 | 56.540 | 237 | 99 | 2 | 2 | 235 | 559 | 794 | 7.27e-78 | 266 |
Find 80 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCAAGGTTAAATAAAT+TGG | 0.166835 | 5.4:-72169867 | MS.gene038324:CDS |
| TTCCAATGATTCTTCATCTT+TGG | 0.180925 | 5.4:+72169090 | None:intergenic |
| TCTTCAATGCTTCATTATTT+TGG | 0.190214 | 5.4:+72168540 | None:intergenic |
| TGACGAATTAAAATTGTTTC+TGG | 0.191505 | 5.4:-72170223 | MS.gene038324:CDS |
| CTTCCAAGAGCAACTTCTTA+TGG | 0.228201 | 5.4:-72168798 | MS.gene038324:CDS |
| TAGCTCAATTCCAGCGCTTT+TGG | 0.241563 | 5.4:-72170750 | MS.gene038324:CDS |
| CCACGAATGCAGTTAGAAAA+TGG | 0.246637 | 5.4:-72169354 | MS.gene038324:intron |
| AATGTTAATTCCTTCTTAAC+TGG | 0.258356 | 5.4:+72169464 | None:intergenic |
| ACAAGGCGACCGGGCTAAAA+TGG | 0.260074 | 5.4:-72168408 | MS.gene038324:CDS |
| GAGGCATTACCCTCATTATT+TGG | 0.263040 | 5.4:+72168228 | None:intergenic |
| TGATACCTTGAAAACGTTAA+AGG | 0.272288 | 5.4:+72171205 | None:intergenic |
| AGTAAGTACATTAATCAAAA+TGG | 0.294834 | 5.4:+72168206 | None:intergenic |
| GAAGATCTTGCAGAACAAAT+TGG | 0.323182 | 5.4:-72171296 | MS.gene038324:CDS |
| CTCTTATTGAATGGCGTAAT+GGG | 0.331630 | 5.4:+72170085 | None:intergenic |
| ATTAAAATTGTTTCTGGAAG+TGG | 0.348069 | 5.4:-72170217 | MS.gene038324:CDS |
| AACATGGTTGCTATAGAGTT+TGG | 0.361077 | 5.4:-72170778 | MS.gene038324:CDS |
| CCAATTCAGTTTGTGCCTCC+AGG | 0.376254 | 5.4:+72168270 | None:intergenic |
| GCCAACACTTTAAAATTTGT+CGG | 0.379592 | 5.4:-72168959 | MS.gene038324:CDS |
| CCTGGAGGCACAAACTGAAT+TGG | 0.380178 | 5.4:-72168270 | MS.gene038324:CDS |
| ATGTGTGTCAAAGGCCGATA+TGG | 0.385971 | 5.4:+72170694 | None:intergenic |
| ACTGGCAAACGCATGACATT+TGG | 0.386148 | 5.4:+72169482 | None:intergenic |
| ATCCAAAGATGAAGAATCAT+TGG | 0.396304 | 5.4:-72169092 | MS.gene038324:CDS |
| CAAGAGAGTTGCGTTGTGTT+TGG | 0.402884 | 5.4:+72168471 | None:intergenic |
| AGAAGTTGCTCTTGGAAGTT+GGG | 0.405096 | 5.4:+72168803 | None:intergenic |
| TCACTTGTACACTATGATAA+AGG | 0.412677 | 5.4:-72171446 | MS.gene038324:intron |
| GGATAAGCCATCAGAAATCT+TGG | 0.414878 | 5.4:-72169885 | MS.gene038324:CDS |
| ATCTTTGGATTCTATATCTG+AGG | 0.416621 | 5.4:+72169105 | None:intergenic |
| AAAAGTTCAATCTCTTCATC+AGG | 0.421693 | 5.4:+72169833 | None:intergenic |
| ACTGTGTTGAAACTAACTTT+AGG | 0.426782 | 5.4:+72168716 | None:intergenic |
| CCTCGTAAAGCTCTTTCAAT+TGG | 0.427504 | 5.4:+72170247 | None:intergenic |
| ATTCCATAAGAAGTTGCTCT+TGG | 0.436863 | 5.4:+72168795 | None:intergenic |
| AATGAAAGCTATTGATTGCC+AGG | 0.443087 | 5.4:-72169250 | MS.gene038324:intron |
| AGAATGAAGGCACATCAAAA+AGG | 0.443323 | 5.4:+72169277 | None:intergenic |
| AAGAAGTTGCTCTTGGAAGT+TGG | 0.443347 | 5.4:+72168802 | None:intergenic |
| TAATCATTGCTCTTATTGAA+TGG | 0.444221 | 5.4:+72170076 | None:intergenic |
| CCCTTTGGTGGCAGTTATGT+TGG | 0.447155 | 5.4:-72169929 | MS.gene038324:intron |
| GCTCTTATTGAATGGCGTAA+TGG | 0.454463 | 5.4:+72170084 | None:intergenic |
| CATGCGTTTGCCAGTTAAGA+AGG | 0.456247 | 5.4:-72169474 | MS.gene038324:CDS |
| GCAAGGTTAAATAAATTGGC+TGG | 0.470203 | 5.4:-72169863 | MS.gene038324:CDS |
| CAACACTGACTTGTTCTAGT+TGG | 0.488324 | 5.4:+72168651 | None:intergenic |
| CATTACCCTCATTATTTGGT+AGG | 0.488902 | 5.4:+72168232 | None:intergenic |
| TTGGTGGCAGTTATGTTGGA+AGG | 0.494286 | 5.4:-72169925 | MS.gene038324:intron |
| TCTATATCTGAGGGCCGAAA+AGG | 0.497785 | 5.4:+72169115 | None:intergenic |
| GCTGGTACCTTTAGCATGAG+TGG | 0.499474 | 5.4:+72168985 | None:intergenic |
| GAGAGTTGCGTTGTGTTTGG+TGG | 0.502859 | 5.4:+72168474 | None:intergenic |
| GCCGATATGGTCGATATGTA+TGG | 0.503263 | 5.4:+72170707 | None:intergenic |
| AAGGCTTATTGTGAACTGTA+AGG | 0.503460 | 5.4:-72169906 | MS.gene038324:CDS |
| AAGCTTATGCTATTGATACT+AGG | 0.505022 | 5.4:-72169311 | MS.gene038324:CDS |
| AACCTTGCCAAGATTTCTGA+TGG | 0.506298 | 5.4:+72169878 | None:intergenic |
| TGAAGCTCAACAGTCAAAAG+TGG | 0.513365 | 5.4:-72169017 | MS.gene038324:CDS |
| ACCATACATATCGACCATAT+CGG | 0.517591 | 5.4:-72170708 | MS.gene038324:CDS |
| GCTTCCTCGATGTGTGTCAA+AGG | 0.520515 | 5.4:+72170685 | None:intergenic |
| TTTGGTCATCAGCGAGGCGA+TGG | 0.525372 | 5.4:+72168321 | None:intergenic |
| AAAATATTATAGCTGAAGAA+AGG | 0.525519 | 5.4:-72169057 | MS.gene038324:CDS |
| AAATAATGAAGCATTGAAGA+AGG | 0.539170 | 5.4:-72168537 | MS.gene038324:CDS |
| AGAAGGCCTACCAAATAATG+AGG | 0.539514 | 5.4:-72168238 | MS.gene038324:CDS |
| AAGTGTTGAAGATAAAATCC+TGG | 0.540552 | 5.4:-72168288 | MS.gene038324:CDS |
| TCTTTGGATTCTATATCTGA+GGG | 0.540937 | 5.4:+72169106 | None:intergenic |
| AGTTAGTTTCAACACAGTCA+TGG | 0.546034 | 5.4:-72168711 | MS.gene038324:CDS |
| ATAGAGACCACTCATGCTAA+AGG | 0.550479 | 5.4:-72168992 | MS.gene038324:CDS |
| ATGATAGACGAGGATGTCAT+TGG | 0.551670 | 5.4:-72168911 | MS.gene038324:CDS |
| ATCGACAAAGTGTTATCAGA+AGG | 0.564630 | 5.4:-72168884 | MS.gene038324:CDS |
| ATCCTGAAAAGAAGAAGCTA+AGG | 0.565994 | 5.4:-72170027 | MS.gene038324:intron |
| ACCTTGTCAACAACATTGCG+AGG | 0.587538 | 5.4:-72168622 | MS.gene038324:CDS |
| ATTAACATTTCAAGAAAGTG+AGG | 0.591223 | 5.4:-72169450 | MS.gene038324:intron |
| ATATCTGAGGGCCGAAAAGG+AGG | 0.595378 | 5.4:+72169118 | None:intergenic |
| TCTGGAAGTGGAGCATGAGC+TGG | 0.601431 | 5.4:-72170205 | MS.gene038324:intron |
| TCCTCGCAATGTTGTTGACA+AGG | 0.602106 | 5.4:+72168621 | None:intergenic |
| TGAATTGGAAAGTCATGAGA+AGG | 0.602939 | 5.4:-72168255 | MS.gene038324:CDS |
| TAGTAGACTTTGACAAAGTG+AGG | 0.605788 | 5.4:-72171253 | MS.gene038324:CDS |
| TCGACAAAGTGTTATCAGAA+GGG | 0.625778 | 5.4:-72168883 | MS.gene038324:CDS |
| AAGTACATTAATCAAAATGG+AGG | 0.631561 | 5.4:+72168209 | None:intergenic |
| AGCCATCAGAAATCTTGGCA+AGG | 0.646518 | 5.4:-72169880 | MS.gene038324:CDS |
| GAAGGCCTACCAAATAATGA+GGG | 0.655305 | 5.4:-72168237 | MS.gene038324:CDS |
| ACTTGATTTGGTCATCAGCG+AGG | 0.655600 | 5.4:+72168315 | None:intergenic |
| CCAATTGAAAGAGCTTTACG+AGG | 0.669698 | 5.4:-72170247 | MS.gene038324:CDS |
| AATTGATGCTATGATAGACG+AGG | 0.695057 | 5.4:-72168921 | MS.gene038324:CDS |
| GTTGTGTTTGGTGGTCTGTG+AGG | 0.712373 | 5.4:+72168483 | None:intergenic |
| TGTTGAAGATAAAATCCTGG+AGG | 0.717731 | 5.4:-72168285 | MS.gene038324:CDS |
| TCGGCCTTTGACACACATCG+AGG | 0.738247 | 5.4:-72170689 | MS.gene038324:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAATCAATATAAAAAA+AGG | + | chr5.4:72169274-72169293 | None:intergenic | 10.0% |
| !! | AAACAATCAATATAAAAAAA+GGG | + | chr5.4:72169273-72169292 | None:intergenic | 10.0% |
| !!! | TTTTTTATATTGATTGTTTT+TGG | - | chr5.4:72169274-72169293 | MS.gene038324:CDS | 10.0% |
| !!! | TTAGTTGAAAATTTTAAACA+AGG | - | chr5.4:72170931-72170950 | MS.gene038324:intron | 15.0% |
| !! | AAAATATTATAGCTGAAGAA+AGG | - | chr5.4:72170620-72170639 | MS.gene038324:intron | 20.0% |
| !! | AAAATGAATCTTGTTAATTG+AGG | - | chr5.4:72168521-72168540 | MS.gene038324:CDS | 20.0% |
| !! | ATGAAATTAGAGTATGTAAT+TGG | + | chr5.4:72168627-72168646 | None:intergenic | 20.0% |
| !! | ATTAAGGGAAAAAAAAACTA+TGG | + | chr5.4:72169303-72169322 | None:intergenic | 20.0% |
| !! | GATAACATATAATACTTCTT+AGG | - | chr5.4:72168347-72168366 | MS.gene038324:CDS | 20.0% |
| !! | TAAAATAATTGTTTCCTATG+AGG | + | chr5.4:72168741-72168760 | None:intergenic | 20.0% |
| !! | TCAACATTAAACATAAATGA+GGG | + | chr5.4:72169159-72169178 | None:intergenic | 20.0% |
| !! | TGAAATTAGAGTATGTAATT+GGG | + | chr5.4:72168626-72168645 | None:intergenic | 20.0% |
| !! | TTAAGGGAAAAAAAAACTAT+GGG | + | chr5.4:72169302-72169321 | None:intergenic | 20.0% |
| !! | TTCAACATTAAACATAAATG+AGG | + | chr5.4:72169160-72169179 | None:intergenic | 20.0% |
| !!! | AATTTCATATTTTCTTGCAA+GGG | - | chr5.4:72168639-72168658 | MS.gene038324:CDS | 20.0% |
| !!! | GTCAATTTTTCATATGTATT+TGG | + | chr5.4:72168596-72168615 | None:intergenic | 20.0% |
| !!! | TAATTTCATATTTTCTTGCA+AGG | - | chr5.4:72168638-72168657 | MS.gene038324:CDS | 20.0% |
| !!! | TTTGATTTTAACATATGTTG+AGG | - | chr5.4:72169690-72169709 | MS.gene038324:intron | 20.0% |
| ! | AAAAATCACAATGCTTTAGT+TGG | - | chr5.4:72168779-72168798 | MS.gene038324:CDS | 25.0% |
| ! | AACATATAATACTTCTTAGG+TGG | - | chr5.4:72168350-72168369 | MS.gene038324:CDS | 25.0% |
| ! | AATACATATGATGTCAACTA+TGG | + | chr5.4:72169727-72169746 | None:intergenic | 25.0% |
| ! | AATCTTAATAACGAAGCATA+TGG | + | chr5.4:72169962-72169981 | None:intergenic | 25.0% |
| ! | AATGTTAATTCCTTCTTAAC+TGG | + | chr5.4:72170216-72170235 | None:intergenic | 25.0% |
| ! | AGAAACAAGATTAGAATAAC+TGG | + | chr5.4:72170500-72170519 | None:intergenic | 25.0% |
| ! | ATAAAATATGAAGCTTGAAG+GGG | + | chr5.4:72169076-72169095 | None:intergenic | 25.0% |
| ! | ATATGCTTCGTTATTAAGAT+TGG | - | chr5.4:72169961-72169980 | MS.gene038324:intron | 25.0% |
| ! | ATATGTATTTGGCACTAATT+TGG | + | chr5.4:72168585-72168604 | None:intergenic | 25.0% |
| ! | ATTAACATTTCAAGAAAGTG+AGG | - | chr5.4:72170227-72170246 | MS.gene038324:CDS | 25.0% |
| ! | CACAAACAAAACAAAATTCT+AGG | + | chr5.4:72168274-72168293 | None:intergenic | 25.0% |
| ! | CATAAAATATGAAGCTTGAA+GGG | + | chr5.4:72169077-72169096 | None:intergenic | 25.0% |
| ! | GAAATTAGAGTATGTAATTG+GGG | + | chr5.4:72168625-72168644 | None:intergenic | 25.0% |
| ! | GACGAACTTCATTATTATAT+AGG | - | chr5.4:72169561-72169580 | MS.gene038324:intron | 25.0% |
| ! | TAATAATGAAGTTCGTCAAA+AGG | + | chr5.4:72169558-72169577 | None:intergenic | 25.0% |
| ! | TAATCATTGCTCTTATTGAA+TGG | + | chr5.4:72169604-72169623 | None:intergenic | 25.0% |
| ! | TATGCTTCGTTATTAAGATT+GGG | - | chr5.4:72169962-72169981 | MS.gene038324:intron | 25.0% |
| ! | TCATAAAATATGAAGCTTGA+AGG | + | chr5.4:72169078-72169097 | None:intergenic | 25.0% |
| ! | TGACGAATTAAAATTGTTTC+TGG | - | chr5.4:72169454-72169473 | MS.gene038324:CDS | 25.0% |
| ! | TTAACATATGTTGAGGTAAA+AGG | - | chr5.4:72169697-72169716 | MS.gene038324:intron | 25.0% |
| !! | GTTATTCTAATCTTGTTTCT+AGG | - | chr5.4:72170500-72170519 | MS.gene038324:intron | 25.0% |
| !! | TCTTCAATGCTTCATTATTT+TGG | + | chr5.4:72171140-72171159 | None:intergenic | 25.0% |
| !!! | AAATAATGAAGCATTGAAGA+AGG | - | chr5.4:72171140-72171159 | MS.gene038324:intron | 25.0% |
| !!! | ATTAAAATTGTTTCTGGAAG+TGG | - | chr5.4:72169460-72169479 | MS.gene038324:CDS | 25.0% |
| !!! | GAAGTTGTATACTATTTTGA+TGG | - | chr5.4:72169510-72169529 | MS.gene038324:intron | 25.0% |
| !!! | TTTTATGACTTTTTCATCTC+TGG | - | chr5.4:72169090-72169109 | MS.gene038324:CDS | 25.0% |
| AAAAGTTCAATCTCTTCATC+AGG | + | chr5.4:72169847-72169866 | None:intergenic | 30.0% | |
| AAACCAATGAAACAGTAACT+TGG | + | chr5.4:72170285-72170304 | None:intergenic | 30.0% | |
| AACCTCAAAAAGAAAATACC+TGG | + | chr5.4:72170448-72170467 | None:intergenic | 30.0% | |
| AAGCTTATGCTATTGATACT+AGG | - | chr5.4:72170366-72170385 | MS.gene038324:intron | 30.0% | |
| AATTAACCAGCATGTCTTAA+AGG | + | chr5.4:72168675-72168694 | None:intergenic | 30.0% | |
| ACATCATATGTATTTCCCTT+TGG | - | chr5.4:72169733-72169752 | MS.gene038324:intron | 30.0% | |
| ACTGTGTTGAAACTAACTTT+AGG | + | chr5.4:72170964-72170983 | None:intergenic | 30.0% | |
| ACTTCACATCATAGTGAAAT+TGG | + | chr5.4:72169373-72169392 | None:intergenic | 30.0% | |
| ATATGACCAACAAGAACAAA+AGG | - | chr5.4:72170082-72170101 | MS.gene038324:CDS | 30.0% | |
| ATCATAGTGAAATTGGTATG+TGG | + | chr5.4:72169366-72169385 | None:intergenic | 30.0% | |
| ATCCAAAGATGAAGAATCAT+TGG | - | chr5.4:72170585-72170604 | MS.gene038324:intron | 30.0% | |
| ATCTTTGGATTCTATATCTG+AGG | + | chr5.4:72170575-72170594 | None:intergenic | 30.0% | |
| CTTGGCAAGGTTAAATAAAT+TGG | - | chr5.4:72169810-72169829 | MS.gene038324:intron | 30.0% | |
| GTGATGTGATATATAGAACA+TGG | - | chr5.4:72168883-72168902 | MS.gene038324:CDS | 30.0% | |
| TAAAATATGAAGCTTGAAGG+GGG | + | chr5.4:72169075-72169094 | None:intergenic | 30.0% | |
| TATGACCAACAAGAACAAAA+GGG | - | chr5.4:72170083-72170102 | MS.gene038324:CDS | 30.0% | |
| TCACTTGTACACTATGATAA+AGG | - | chr5.4:72168231-72168250 | MS.gene038324:CDS | 30.0% | |
| TCAGCAGAAAACTAAAAAGT+CGG | + | chr5.4:72169889-72169908 | None:intergenic | 30.0% | |
| TCTTTGGATTCTATATCTGA+GGG | + | chr5.4:72170574-72170593 | None:intergenic | 30.0% | |
| TGATACCTTGAAAACGTTAA+AGG | + | chr5.4:72168475-72168494 | None:intergenic | 30.0% | |
| TGTTTAGTAAATATGCTTGC+TGG | - | chr5.4:72170006-72170025 | MS.gene038324:intron | 30.0% | |
| TTCCAATGATTCTTCATCTT+TGG | + | chr5.4:72170590-72170609 | None:intergenic | 30.0% | |
| TTTATTTCCTGCACAACAAT+AGG | + | chr5.4:72170168-72170187 | None:intergenic | 30.0% | |
| ! | ATCAAGCTGTTACTTAATTG+CGG | - | chr5.4:72169198-72169217 | MS.gene038324:intron | 30.0% |
| ! | CAACACTTTTCAACTTGATT+TGG | + | chr5.4:72171377-72171396 | None:intergenic | 30.0% |
| ! | TCTCTGAAAATTTATCATGC+TGG | - | chr5.4:72170058-72170077 | MS.gene038324:CDS | 30.0% |
| ! | TCTTGTGGTTTTTATGCTTT+TGG | - | chr5.4:72168828-72168847 | MS.gene038324:CDS | 30.0% |
| ! | TGAAGAGATTGAACTTTTTG+AGG | - | chr5.4:72169849-72169868 | MS.gene038324:CDS | 30.0% |
| !! | AAGTGTTGAAGATAAAATCC+TGG | - | chr5.4:72171389-72171408 | MS.gene038324:intron | 30.0% |
| !! | GCCAACACTTTAAAATTTGT+CGG | - | chr5.4:72170718-72170737 | MS.gene038324:CDS | 30.0% |
| !! | GCTTTCATTTTCAAGAATGA+AGG | + | chr5.4:72170416-72170435 | None:intergenic | 30.0% |
| !! | TATTTTAGATGCATCCTCAT+AGG | - | chr5.4:72168724-72168743 | MS.gene038324:CDS | 30.0% |
| AACATGGTTGCTATAGAGTT+TGG | - | chr5.4:72168899-72168918 | MS.gene038324:CDS | 35.0% | |
| AAGGCTTATTGTGAACTGTA+AGG | - | chr5.4:72169771-72169790 | MS.gene038324:intron | 35.0% | |
| AATATAAAAAAAGGGCAGCC+CGG | + | chr5.4:72169265-72169284 | None:intergenic | 35.0% | |
| AATTCTTCCTATTGTTGTGC+AGG | - | chr5.4:72170158-72170177 | MS.gene038324:intron | 35.0% | |
| AATTGATGCTATGATAGACG+AGG | - | chr5.4:72170756-72170775 | MS.gene038324:CDS | 35.0% | |
| ACATATGTTGAGGTAAAAGG+TGG | - | chr5.4:72169700-72169719 | MS.gene038324:intron | 35.0% | |
| ACCATACATATCGACCATAT+CGG | - | chr5.4:72168969-72168988 | MS.gene038324:CDS | 35.0% | |
| ACCGAAGATTCCATTAGAAA+AGG | + | chr5.4:72170109-72170128 | None:intergenic | 35.0% | |
| ATATGGTTTCTGAACATGCA+AGG | + | chr5.4:72169945-72169964 | None:intergenic | 35.0% | |
| ATCCTGAAAAGAAGAAGCTA+AGG | - | chr5.4:72169650-72169669 | MS.gene038324:intron | 35.0% | |
| ATTCCATAAGAAGTTGCTCT+TGG | + | chr5.4:72170885-72170904 | None:intergenic | 35.0% | |
| CATACGTCATATGAATCTTG+TGG | - | chr5.4:72168813-72168832 | MS.gene038324:CDS | 35.0% | |
| CATTACCCTCATTATTTGGT+AGG | + | chr5.4:72171448-72171467 | None:intergenic | 35.0% | |
| CTCTTATTGAATGGCGTAAT+GGG | + | chr5.4:72169595-72169614 | None:intergenic | 35.0% | |
| GAAGATCTTGCAGAACAAAT+TGG | - | chr5.4:72168381-72168400 | MS.gene038324:CDS | 35.0% | |
| GCAAGGTTAAATAAATTGGC+TGG | - | chr5.4:72169814-72169833 | MS.gene038324:intron | 35.0% | |
| TAGTAGACTTTGACAAAGTG+AGG | - | chr5.4:72168424-72168443 | MS.gene038324:CDS | 35.0% | |
| TCATATGTATTTCCCTTTGG+TGG | - | chr5.4:72169736-72169755 | MS.gene038324:intron | 35.0% | |
| TGAATTGGAAAGTCATGAGA+AGG | - | chr5.4:72171422-72171441 | MS.gene038324:intron | 35.0% | |
| TGTTGAAGATAAAATCCTGG+AGG | - | chr5.4:72171392-72171411 | MS.gene038324:intron | 35.0% | |
| TTAGTAGTTACATACCCAGT+TGG | - | chr5.4:72170253-72170272 | MS.gene038324:CDS | 35.0% | |
| TTTCTTGCAAGGGAATTCAA+TGG | - | chr5.4:72168649-72168668 | MS.gene038324:CDS | 35.0% | |
| ! | AACAAAAGGGCCTTTTCTAA+TGG | - | chr5.4:72170096-72170115 | MS.gene038324:CDS | 35.0% |
| ! | AATGAAAGCTATTGATTGCC+AGG | - | chr5.4:72170427-72170446 | MS.gene038324:intron | 35.0% |
| ! | AGAATGAAGGCACATCAAAA+AGG | + | chr5.4:72170403-72170422 | None:intergenic | 35.0% |
| ! | AGTTAGTTTCAACACAGTCA+TGG | - | chr5.4:72170966-72170985 | MS.gene038324:intron | 35.0% |
| ! | ATCGACAAAGTGTTATCAGA+AGG | - | chr5.4:72170793-72170812 | MS.gene038324:intron | 35.0% |
| ! | GACAGAATGCTGAGATTTTA+AGG | + | chr5.4:72170830-72170849 | None:intergenic | 35.0% |
| ! | GACATCCTTTAACGTTTTCA+AGG | - | chr5.4:72168467-72168486 | MS.gene038324:CDS | 35.0% |
| ! | GCCTTTTCTAATGGAATCTT+CGG | - | chr5.4:72170105-72170124 | MS.gene038324:intron | 35.0% |
| ! | TACCTTAGCTTCTTCTTTTC+AGG | + | chr5.4:72169655-72169674 | None:intergenic | 35.0% |
| ! | TCAAGCTGTTACTTAATTGC+GGG | - | chr5.4:72169199-72169218 | MS.gene038324:intron | 35.0% |
| ! | TCGACAAAGTGTTATCAGAA+GGG | - | chr5.4:72170794-72170813 | MS.gene038324:intron | 35.0% |
| ! | TGCCAGGTATTTTCTTTTTG+AGG | - | chr5.4:72170443-72170462 | MS.gene038324:intron | 35.0% |
| ! | TTTTCCCTTAATGCTTGTGA+GGG | - | chr5.4:72169311-72169330 | MS.gene038324:CDS | 35.0% |
| ! | TTTTTCCCTTAATGCTTGTG+AGG | - | chr5.4:72169310-72169329 | MS.gene038324:CDS | 35.0% |
| !!! | GAGATTGAACTTTTTGAGGT+TGG | - | chr5.4:72169853-72169872 | MS.gene038324:CDS | 35.0% |
| !!! | GCCGACAAATTTTAAAGTGT+TGG | + | chr5.4:72170722-72170741 | None:intergenic | 35.0% |
| !!! | TTTTAAAGTGTTGGCTTTGC+TGG | + | chr5.4:72170713-72170732 | None:intergenic | 35.0% |
| AACCTTGCCAAGATTTCTGA+TGG | + | chr5.4:72169802-72169821 | None:intergenic | 40.0% | |
| AAGAAGTTGCTCTTGGAAGT+TGG | + | chr5.4:72170878-72170897 | None:intergenic | 40.0% | |
| AAGATTGGGTCAAGCAATCA+TGG | - | chr5.4:72169976-72169995 | MS.gene038324:intron | 40.0% | |
| ACGCCAAGTTACTGTTTCAT+TGG | - | chr5.4:72170279-72170298 | MS.gene038324:intron | 40.0% | |
| AGAAGGCCTACCAAATAATG+AGG | - | chr5.4:72171439-72171458 | MS.gene038324:intron | 40.0% | |
| AGAAGTTGCTCTTGGAAGTT+GGG | + | chr5.4:72170877-72170896 | None:intergenic | 40.0% | |
| ATAAAGGTCCTGCATATGCA+GGG | + | chr5.4:72169238-72169257 | None:intergenic | 40.0% | |
| ATAGAGACCACTCATGCTAA+AGG | - | chr5.4:72170685-72170704 | MS.gene038324:CDS | 40.0% | |
| ATGATAGACGAGGATGTCAT+TGG | - | chr5.4:72170766-72170785 | MS.gene038324:CDS | 40.0% | |
| ATGCAGGACCTTTATGAAAC+CGG | - | chr5.4:72169243-72169262 | MS.gene038324:intron | 40.0% | |
| CCAAAAACAAGTCTCAAAGC+TGG | - | chr5.4:72170849-72170868 | MS.gene038324:intron | 40.0% | |
| CCAATTGAAAGAGCTTTACG+AGG | - | chr5.4:72169430-72169449 | MS.gene038324:intron | 40.0% | |
| CCACGAATGCAGTTAGAAAA+TGG | - | chr5.4:72170323-72170342 | MS.gene038324:intron | 40.0% | |
| CCTCGTAAAGCTCTTTCAAT+TGG | + | chr5.4:72169433-72169452 | None:intergenic | 40.0% | |
| CTCTGGTTGTTGACAAATGT+TGG | - | chr5.4:72169107-72169126 | MS.gene038324:CDS | 40.0% | |
| CTTCCAAGAGCAACTTCTTA+TGG | - | chr5.4:72170879-72170898 | MS.gene038324:intron | 40.0% | |
| GAAGGCCTACCAAATAATGA+GGG | - | chr5.4:72171440-72171459 | MS.gene038324:intron | 40.0% | |
| GCCAAGCTTGAAAAACTACA+AGG | - | chr5.4:72171252-72171271 | MS.gene038324:CDS | 40.0% | |
| GCTCTTATTGAATGGCGTAA+TGG | + | chr5.4:72169596-72169615 | None:intergenic | 40.0% | |
| GGATAAGCCATCAGAAATCT+TGG | - | chr5.4:72169792-72169811 | MS.gene038324:intron | 40.0% | |
| TACCTGCAATTGGAATCAGA+AGG | + | chr5.4:72169408-72169427 | None:intergenic | 40.0% | |
| TGAAGCTCAACAGTCAAAAG+TGG | - | chr5.4:72170660-72170679 | MS.gene038324:intron | 40.0% | |
| TTCTGATTCCAATTGCAGGT+AGG | - | chr5.4:72169407-72169426 | MS.gene038324:intron | 40.0% | |
| TTGAAAAACTACAAGGCGAC+CGG | - | chr5.4:72171259-72171278 | MS.gene038324:CDS | 40.0% | |
| ! | AAAGGCCCTTTTGTTCTTGT+TGG | + | chr5.4:72170091-72170110 | None:intergenic | 40.0% |
| ! | AATTCCAGCGCTTTTGGATA+TGG | - | chr5.4:72168933-72168952 | MS.gene038324:CDS | 40.0% |
| ! | ATATGCTTGCTGGTGATGAA+TGG | - | chr5.4:72170016-72170035 | MS.gene038324:intron | 40.0% |
| ! | ATGAAGGCACATCAAAAAGG+TGG | + | chr5.4:72170400-72170419 | None:intergenic | 40.0% |
| ! | CCATTTTCTAACTGCATTCG+TGG | + | chr5.4:72170326-72170345 | None:intergenic | 40.0% |
| ! | GAGGCATTACCCTCATTATT+TGG | + | chr5.4:72171452-72171471 | None:intergenic | 40.0% |
| !! | CAACACTGACTTGTTCTAGT+TGG | + | chr5.4:72171029-72171048 | None:intergenic | 40.0% |
| !! | CGAATGTTGTTTCCTTGTTC+AGG | - | chr5.4:72170534-72170553 | MS.gene038324:intron | 40.0% |
| !! | TTGTTCAGGTTCCTCCTTTT+CGG | - | chr5.4:72170548-72170567 | MS.gene038324:intron | 40.0% |
| !! | TTTTCCATATCCAAAAGCGC+TGG | + | chr5.4:72168940-72168959 | None:intergenic | 40.0% |
| !!! | CCAGCTTTGAGACTTGTTTT+TGG | + | chr5.4:72170852-72170871 | None:intergenic | 40.0% |
| !!! | GCCTTGTAGTTTTTCAAGCT+TGG | + | chr5.4:72171256-72171275 | None:intergenic | 40.0% |
| AAGCACCCTCACAAGCATTA+AGG | + | chr5.4:72169319-72169338 | None:intergenic | 45.0% | |
| ACCTTGTCAACAACATTGCG+AGG | - | chr5.4:72171055-72171074 | MS.gene038324:intron | 45.0% | |
| ACTGGCAAACGCATGACATT+TGG | + | chr5.4:72170198-72170217 | None:intergenic | 45.0% | |
| AGCACCCTCACAAGCATTAA+GGG | + | chr5.4:72169318-72169337 | None:intergenic | 45.0% | |
| AGCCATCAGAAATCTTGGCA+AGG | - | chr5.4:72169797-72169816 | MS.gene038324:intron | 45.0% | |
| ATGTGTGTCAAAGGCCGATA+TGG | + | chr5.4:72168986-72169005 | None:intergenic | 45.0% | |
| CAAGAGAGTTGCGTTGTGTT+TGG | + | chr5.4:72171209-72171228 | None:intergenic | 45.0% | |
| CATAAAGGTCCTGCATATGC+AGG | + | chr5.4:72169239-72169258 | None:intergenic | 45.0% | |
| CATGCGTTTGCCAGTTAAGA+AGG | - | chr5.4:72170203-72170222 | MS.gene038324:intron | 45.0% | |
| CCAACATAACTGCCACCAAA+GGG | + | chr5.4:72169751-72169770 | None:intergenic | 45.0% | |
| CTCCTTCTGATTCCAATTGC+AGG | - | chr5.4:72169403-72169422 | MS.gene038324:intron | 45.0% | |
| GAAAAGGAGGAACCTGAACA+AGG | + | chr5.4:72170549-72170568 | None:intergenic | 45.0% | |
| GCCGATATGGTCGATATGTA+TGG | + | chr5.4:72168973-72168992 | None:intergenic | 45.0% | |
| TCCAACATAACTGCCACCAA+AGG | + | chr5.4:72169752-72169771 | None:intergenic | 45.0% | |
| TCCTCGCAATGTTGTTGACA+AGG | + | chr5.4:72171059-72171078 | None:intergenic | 45.0% | |
| TCTATATCTGAGGGCCGAAA+AGG | + | chr5.4:72170565-72170584 | None:intergenic | 45.0% | |
| TGAAAAACTACAAGGCGACC+GGG | - | chr5.4:72171260-72171279 | MS.gene038324:CDS | 45.0% | |
| TGCAGGACCTTTATGAAACC+GGG | - | chr5.4:72169244-72169263 | MS.gene038324:intron | 45.0% | |
| ! | TAGCTCAATTCCAGCGCTTT+TGG | - | chr5.4:72168927-72168946 | MS.gene038324:CDS | 45.0% |
| ! | TCAATTGGCCTACCTGCAAT+TGG | + | chr5.4:72169418-72169437 | None:intergenic | 45.0% |
| ! | TTGGTGGCAGTTATGTTGGA+AGG | - | chr5.4:72169752-72169771 | MS.gene038324:intron | 45.0% |
| !! | ACTTGATTTGGTCATCAGCG+AGG | + | chr5.4:72171365-72171384 | None:intergenic | 45.0% |
| !! | CAATGGCCTTTAAGACATGC+TGG | - | chr5.4:72168666-72168685 | MS.gene038324:CDS | 45.0% |
| !! | GAATCTCAGCCATTTTAGCC+CGG | + | chr5.4:72171281-72171300 | None:intergenic | 45.0% |
| ATATCTGAGGGCCGAAAAGG+AGG | + | chr5.4:72170562-72170581 | None:intergenic | 50.0% | |
| CCAATTCAGTTTGTGCCTCC+AGG | + | chr5.4:72171410-72171429 | None:intergenic | 50.0% | |
| GAGAGTTGCGTTGTGTTTGG+TGG | + | chr5.4:72171206-72171225 | None:intergenic | 50.0% | |
| GCTGGTACCTTTAGCATGAG+TGG | + | chr5.4:72170695-72170714 | None:intergenic | 50.0% | |
| GCTTCCTCGATGTGTGTCAA+AGG | + | chr5.4:72168995-72169014 | None:intergenic | 50.0% | |
| TAACTTGGCGTGCACCAACT+GGG | + | chr5.4:72170270-72170289 | None:intergenic | 50.0% | |
| ! | CCCTTTGGTGGCAGTTATGT+TGG | - | chr5.4:72169748-72169767 | MS.gene038324:intron | 50.0% |
| ! | CCTGGAGGCACAAACTGAAT+TGG | - | chr5.4:72171407-72171426 | MS.gene038324:intron | 50.0% |
| ! | GTTGTGTTTGGTGGTCTGTG+AGG | + | chr5.4:72171197-72171216 | None:intergenic | 50.0% |
| ACAAGGCGACCGGGCTAAAA+TGG | - | chr5.4:72171269-72171288 | MS.gene038324:CDS | 55.0% | |
| AGGGCAGCCCGGTTTCATAA+AGG | + | chr5.4:72169254-72169273 | None:intergenic | 55.0% | |
| GTAACTTGGCGTGCACCAAC+TGG | + | chr5.4:72170271-72170290 | None:intergenic | 55.0% | |
| TCGGCCTTTGACACACATCG+AGG | - | chr5.4:72168988-72169007 | MS.gene038324:CDS | 55.0% | |
| TCTGGAAGTGGAGCATGAGC+TGG | - | chr5.4:72169472-72169491 | MS.gene038324:CDS | 55.0% | |
| TGCATATGCAGGGTCCGAGA+GGG | + | chr5.4:72169228-72169247 | None:intergenic | 55.0% | |
| TTAATTGCGGGACCCCCTCT+CGG | - | chr5.4:72169211-72169230 | MS.gene038324:intron | 55.0% | |
| TTTGGTCATCAGCGAGGCGA+TGG | + | chr5.4:72171359-72171378 | None:intergenic | 55.0% | |
| CATATGCAGGGTCCGAGAGG+GGG | + | chr5.4:72169226-72169245 | None:intergenic | 60.0% | |
| CTCTCGGACCCTGCATATGC+AGG | - | chr5.4:72169227-72169246 | MS.gene038324:intron | 60.0% | |
| CTGCATATGCAGGGTCCGAG+AGG | + | chr5.4:72169229-72169248 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGAGAG+GGG | + | chr5.4:72169227-72169246 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 72168220 | 72171479 | 72168220 | ID=MS.gene038324 |
| chr5.4 | mRNA | 72168220 | 72171479 | 72168220 | ID=MS.gene038324.t1;Parent=MS.gene038324 |
| chr5.4 | exon | 72171447 | 72171479 | 72171447 | ID=MS.gene038324.t1.exon1;Parent=MS.gene038324.t1 |
| chr5.4 | CDS | 72171447 | 72171479 | 72171447 | ID=cds.MS.gene038324.t1;Parent=MS.gene038324.t1 |
| chr5.4 | exon | 72171211 | 72171330 | 72171211 | ID=MS.gene038324.t1.exon2;Parent=MS.gene038324.t1 |
| chr5.4 | CDS | 72171211 | 72171330 | 72171211 | ID=cds.MS.gene038324.t1;Parent=MS.gene038324.t1 |
| chr5.4 | exon | 72170678 | 72170800 | 72170678 | ID=MS.gene038324.t1.exon3;Parent=MS.gene038324.t1 |
| chr5.4 | CDS | 72170678 | 72170800 | 72170678 | ID=cds.MS.gene038324.t1;Parent=MS.gene038324.t1 |
| chr5.4 | exon | 72170206 | 72170274 | 72170206 | ID=MS.gene038324.t1.exon4;Parent=MS.gene038324.t1 |
| chr5.4 | CDS | 72170206 | 72170274 | 72170206 | ID=cds.MS.gene038324.t1;Parent=MS.gene038324.t1 |
| chr5.4 | exon | 72170028 | 72170116 | 72170028 | ID=MS.gene038324.t1.exon5;Parent=MS.gene038324.t1 |
| chr5.4 | CDS | 72170028 | 72170116 | 72170028 | ID=cds.MS.gene038324.t1;Parent=MS.gene038324.t1 |
| chr5.4 | exon | 72169829 | 72169937 | 72169829 | ID=MS.gene038324.t1.exon6;Parent=MS.gene038324.t1 |
| chr5.4 | CDS | 72169829 | 72169937 | 72169829 | ID=cds.MS.gene038324.t1;Parent=MS.gene038324.t1 |
| chr5.4 | exon | 72169451 | 72169519 | 72169451 | ID=MS.gene038324.t1.exon7;Parent=MS.gene038324.t1 |
| chr5.4 | CDS | 72169451 | 72169519 | 72169451 | ID=cds.MS.gene038324.t1;Parent=MS.gene038324.t1 |
| chr5.4 | exon | 72169251 | 72169364 | 72169251 | ID=MS.gene038324.t1.exon8;Parent=MS.gene038324.t1 |
| chr5.4 | CDS | 72169251 | 72169364 | 72169251 | ID=cds.MS.gene038324.t1;Parent=MS.gene038324.t1 |
| chr5.4 | exon | 72168220 | 72169143 | 72168220 | ID=MS.gene038324.t1.exon9;Parent=MS.gene038324.t1 |
| chr5.4 | CDS | 72168220 | 72169143 | 72168220 | ID=cds.MS.gene038324.t1;Parent=MS.gene038324.t1 |
| Gene Sequence |
| Protein sequence |
