Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038333.t1 | AET00383.1 | 93.7 | 520 | 31 | 1 | 1 | 518 | 30 | 549 | 2.00E-242 | 848.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038333.t1 | Q9FPT1 | 58.0 | 257 | 102 | 4 | 2 | 254 | 562 | 816 | 6.9e-74 | 279.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038333.t1 | G7KD55 | 93.7 | 520 | 31 | 1 | 1 | 518 | 30 | 549 | 1.5e-242 | 848.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038333.t1 | MTR_5g091410 | 93.846 | 520 | 30 | 1 | 1 | 518 | 30 | 549 | 0.0 | 917 |
| MS.gene038333.t1 | MTR_5g091450 | 59.567 | 601 | 156 | 9 | 5 | 518 | 192 | 792 | 0.0 | 632 |
| MS.gene038333.t1 | MTR_5g091430 | 60.000 | 550 | 188 | 5 | 1 | 518 | 1 | 550 | 0.0 | 606 |
| MS.gene038333.t1 | MTR_5g091180 | 59.231 | 520 | 160 | 7 | 2 | 490 | 202 | 700 | 0.0 | 528 |
| MS.gene038333.t1 | MTR_5g091550 | 67.014 | 288 | 68 | 4 | 6 | 267 | 178 | 464 | 1.33e-116 | 353 |
| MS.gene038333.t1 | MTR_5g091550 | 67.014 | 288 | 68 | 4 | 6 | 267 | 183 | 469 | 1.49e-116 | 353 |
| MS.gene038333.t1 | MTR_5g086700 | 70.155 | 258 | 73 | 3 | 5 | 258 | 569 | 826 | 1.80e-113 | 362 |
| MS.gene038333.t1 | MTR_5g086700 | 70.155 | 258 | 73 | 3 | 5 | 258 | 569 | 826 | 2.26e-113 | 361 |
| MS.gene038333.t1 | MTR_5g091530 | 63.806 | 268 | 75 | 2 | 5 | 270 | 120 | 367 | 1.59e-110 | 333 |
| MS.gene038333.t1 | MTR_3g079840 | 66.667 | 258 | 82 | 3 | 5 | 258 | 564 | 821 | 6.11e-110 | 352 |
| MS.gene038333.t1 | MTR_3g079840 | 66.667 | 258 | 82 | 3 | 5 | 258 | 565 | 822 | 6.28e-110 | 352 |
| MS.gene038333.t1 | MTR_1g041240 | 59.073 | 259 | 101 | 3 | 5 | 258 | 565 | 823 | 4.03e-90 | 298 |
| MS.gene038333.t1 | MTR_1g041240 | 59.073 | 259 | 101 | 3 | 5 | 258 | 566 | 824 | 4.38e-90 | 298 |
| MS.gene038333.t1 | MTR_1g041240 | 59.073 | 259 | 101 | 3 | 5 | 258 | 564 | 822 | 4.98e-90 | 298 |
| MS.gene038333.t1 | MTR_5g091460 | 77.273 | 44 | 10 | 0 | 1 | 44 | 1 | 44 | 1.30e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038333.t1 | AT5G06600 | 56.296 | 270 | 112 | 4 | 2 | 267 | 562 | 829 | 4.51e-84 | 280 |
| MS.gene038333.t1 | AT5G06600 | 56.296 | 270 | 112 | 4 | 2 | 267 | 562 | 829 | 2.11e-83 | 280 |
| MS.gene038333.t1 | AT5G06600 | 56.296 | 270 | 112 | 4 | 2 | 267 | 561 | 828 | 2.19e-83 | 280 |
| MS.gene038333.t1 | AT3G11910 | 54.789 | 261 | 113 | 3 | 2 | 258 | 560 | 819 | 4.26e-83 | 279 |
| MS.gene038333.t1 | AT3G11910 | 54.789 | 261 | 113 | 3 | 2 | 258 | 560 | 819 | 4.26e-83 | 279 |
| MS.gene038333.t1 | AT3G11910 | 54.789 | 261 | 113 | 3 | 2 | 258 | 559 | 818 | 4.39e-83 | 279 |
| MS.gene038333.t1 | AT3G11910 | 54.789 | 261 | 113 | 3 | 2 | 258 | 559 | 818 | 4.39e-83 | 279 |
Find 87 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCAATCTCAACAATTT+TGG | 0.130984 | 5.4:+72291372 | None:intergenic |
| TACCGTAGCTCCTCTCTTTC+AGG | 0.184833 | 5.4:+72292836 | None:intergenic |
| TGACGAATTAAAATTGTTTC+TGG | 0.191505 | 5.4:-72293034 | MS.gene038333:CDS |
| ATCCCGGTCGGTGCTCTTCT+TGG | 0.244992 | 5.4:+72291534 | None:intergenic |
| CAGCTCAATTCCAGCGCTTT+TGG | 0.258793 | 5.4:-72296265 | MS.gene038333:CDS |
| ACAGGAAAACATTTGACTTT+TGG | 0.281379 | 5.4:+72292370 | None:intergenic |
| AGCAAATACATGAATCAAAA+TGG | 0.300931 | 5.4:+72291187 | None:intergenic |
| CCTCCCTGATCAACTTCTTC+AGG | 0.313808 | 5.4:-72291776 | MS.gene038333:CDS |
| TCTATATCTGAGGGACAAAA+AGG | 0.328583 | 5.4:+72292009 | None:intergenic |
| AATGTTAATTTCTTCTCAAC+AGG | 0.339875 | 5.4:+72292352 | None:intergenic |
| ATTAAAATTGTTTCTGGAAG+TGG | 0.348069 | 5.4:-72293028 | MS.gene038333:CDS |
| GAAATTTGCTGATCAAATTC+CGG | 0.348773 | 5.4:-72291269 | MS.gene038333:CDS |
| ACAAAGTTAAATAAATTTGC+TGG | 0.349648 | 5.4:-72292674 | MS.gene038333:CDS |
| TTCCAATGATGCTTCATCTT+CGG | 0.360850 | 5.4:+72291984 | None:intergenic |
| GAAAATGTGGCTAAAGAGTT+TGG | 0.365160 | 5.4:-72296293 | MS.gene038333:CDS |
| GAAGACCTTGCAGAACAAAT+TGG | 0.376282 | 5.4:-72297146 | MS.gene038333:CDS |
| TCCGGAGCACGAAACTGAAT+TGG | 0.406924 | 5.4:-72291251 | MS.gene038333:CDS |
| CCCACTGCACCACTCAATAT+CGG | 0.409594 | 5.4:-72292896 | MS.gene038333:CDS |
| TCCAATTCAGTTTCGTGCTC+CGG | 0.414367 | 5.4:+72291250 | None:intergenic |
| ATCAACTTCTTCAGGAATTG+AGG | 0.415620 | 5.4:-72291768 | MS.gene038333:CDS |
| TCACTTGTACACTATTATAA+AGG | 0.420395 | 5.4:-72297318 | MS.gene038333:intron |
| CAAGAGAGTTGAGTTCTGTT+TGG | 0.420830 | 5.4:+72291449 | None:intergenic |
| ATCCGAAGATGAAGCATCAT+TGG | 0.433069 | 5.4:-72291986 | MS.gene038333:CDS |
| AATTCCTGAAGAAGTTGATC+AGG | 0.436725 | 5.4:+72291772 | None:intergenic |
| TCCATGTATGAAAGAACATT+AGG | 0.441990 | 5.4:+72292161 | None:intergenic |
| TCCTAATGTTCTTTCATACA+TGG | 0.442035 | 5.4:-72292162 | MS.gene038333:CDS |
| TGCAATCGACAAAGTTATAT+CGG | 0.444376 | 5.4:-72291839 | MS.gene038333:CDS |
| CCGTTCTATGGCAGTTATGC+TGG | 0.448933 | 5.4:-72292740 | MS.gene038333:intron |
| CCGGGATAATGAGGAATTGA+AGG | 0.460597 | 5.4:-72291518 | MS.gene038333:CDS |
| GTTGTTAGATCTTGATGATA+TGG | 0.461546 | 5.4:-72291881 | MS.gene038333:CDS |
| TGAAGAGATCGAACTTTATG+AGG | 0.464839 | 5.4:-72292639 | MS.gene038333:intron |
| ACAATTGAAAGAACTTCAAA+AGG | 0.470031 | 5.4:-72293058 | MS.gene038333:CDS |
| AAATGGAGGGTTTGCCCTCA+AGG | 0.477451 | 5.4:+72291204 | None:intergenic |
| TCAACTTCTTCAGGAATTGA+GGG | 0.478362 | 5.4:-72291767 | MS.gene038333:CDS |
| GAGAGTTGAGTTCTGTTTGG+TGG | 0.479747 | 5.4:+72291452 | None:intergenic |
| TAAAGTTCGATCTCTTCATC+AGG | 0.486377 | 5.4:+72292644 | None:intergenic |
| GCCGAGATGGTCGACATGTA+TGG | 0.498312 | 5.4:+72296222 | None:intergenic |
| CCACTCAATATCGGAGAGAA+TGG | 0.506634 | 5.4:-72292887 | MS.gene038333:CDS |
| TTGGTTGTAAAATTTAAACT+AGG | 0.511006 | 5.4:-72291724 | MS.gene038333:CDS |
| AGCCAAGAAGAGCACCGACC+GGG | 0.514973 | 5.4:-72291536 | MS.gene038333:CDS |
| CATTTCCAATTTGTTCTGCA+AGG | 0.515390 | 5.4:+72297141 | None:intergenic |
| CTTGATCAATAGCGAGGCGA+TGG | 0.523992 | 5.4:+72291299 | None:intergenic |
| TCCGATATTGAGTGGTGCAG+TGG | 0.529032 | 5.4:+72292895 | None:intergenic |
| TTTCCCATAACCAAAAGCGC+TGG | 0.535608 | 5.4:+72296255 | None:intergenic |
| TCTGGAAGTGGAGCGTGGGC+TGG | 0.536325 | 5.4:-72293016 | MS.gene038333:intron |
| ATGGTAGATGTGGATGTCAT+TGG | 0.537197 | 5.4:-72291862 | MS.gene038333:CDS |
| GAGCACCGACCGGGATAATG+AGG | 0.542312 | 5.4:-72291527 | MS.gene038333:CDS |
| ATGTCTGTCAGAAGCCGAGA+TGG | 0.544726 | 5.4:+72296209 | None:intergenic |
| ATCGACAAAGTTATATCGGA+AGG | 0.546426 | 5.4:-72291835 | MS.gene038333:CDS |
| CAAAAGCGCTGGAATTGAGC+TGG | 0.551315 | 5.4:+72296266 | None:intergenic |
| GGAATATGTGTACAATCGCC+AGG | 0.551328 | 5.4:-72292141 | MS.gene038333:intron |
| GAAGGTCTACAAAACCTTGA+GGG | 0.554427 | 5.4:-72291218 | MS.gene038333:CDS |
| ATGTGATATGTAGGAAAATG+TGG | 0.556592 | 5.4:-72296306 | MS.gene038333:intron |
| CCTTCAATTCCTCATTATCC+CGG | 0.561287 | 5.4:+72291518 | None:intergenic |
| ATCTTCGGATTCTATATCTG+AGG | 0.562134 | 5.4:+72291999 | None:intergenic |
| CCGATATTGAGTGGTGCAGT+GGG | 0.565192 | 5.4:+72292896 | None:intergenic |
| CAATTCCTCATTATCCCGGT+CGG | 0.565614 | 5.4:+72291522 | None:intergenic |
| CAGCCAAGAAGAGCACCGAC+CGG | 0.569178 | 5.4:-72291537 | MS.gene038333:CDS |
| ACCATACATGTCGACCATCT+CGG | 0.571073 | 5.4:-72296223 | MS.gene038333:CDS |
| TCTTCGGATTCTATATCTGA+GGG | 0.574584 | 5.4:+72292000 | None:intergenic |
| TTGTTTCTGGAAGTGGAGCG+TGG | 0.575815 | 5.4:-72293021 | MS.gene038333:CDS |
| AGTAAACTTCAATGTAGTCA+AGG | 0.582753 | 5.4:-72291689 | MS.gene038333:CDS |
| ACTTGCTCAACAAAATTGAG+TGG | 0.584340 | 5.4:-72291600 | MS.gene038333:CDS |
| GTTATATGATCCTGAAAGAG+AGG | 0.584929 | 5.4:-72292846 | MS.gene038333:CDS |
| TTCTGTTTGGTGGATGTCGA+GGG | 0.586793 | 5.4:+72291462 | None:intergenic |
| CTATGAATGCAGTTAGACAA+TGG | 0.587686 | 5.4:-72292242 | MS.gene038333:intron |
| TTGTTGACCTTGACAAAGTG+AGG | 0.589080 | 5.4:-72297103 | MS.gene038333:CDS |
| ATCCTGAAAGAGAGGAGCTA+CGG | 0.592917 | 5.4:-72292838 | MS.gene038333:intron |
| GTTCTGTTTGGTGGATGTCG+AGG | 0.599369 | 5.4:+72291461 | None:intergenic |
| TCTTGATGATATGGTAGATG+TGG | 0.605563 | 5.4:-72291872 | MS.gene038333:CDS |
| AAATACATGAATCAAAATGG+AGG | 0.606725 | 5.4:+72291190 | None:intergenic |
| AATACATGAATCAAAATGGA+GGG | 0.610120 | 5.4:+72291191 | None:intergenic |
| TGAATTGGAAGGTCATGAGA+AGG | 0.617326 | 5.4:-72291236 | MS.gene038333:CDS |
| CCATTCTCTCCGATATTGAG+TGG | 0.627085 | 5.4:+72292887 | None:intergenic |
| TCTATGGCAGTTATGCTGGA+AGG | 0.627842 | 5.4:-72292736 | MS.gene038333:intron |
| TACTTCTTAGGTGGTACGAG+AGG | 0.634920 | 5.4:-72297168 | MS.gene038333:intron |
| GGAAACTCCTCACTTTGTCA+AGG | 0.635577 | 5.4:+72297096 | None:intergenic |
| TGTTTCTGGAAGTGGAGCGT+GGG | 0.635734 | 5.4:-72293020 | MS.gene038333:CDS |
| ATTCCTGAAGAAGTTGATCA+GGG | 0.638559 | 5.4:+72291773 | None:intergenic |
| AGAAGGTCTACAAAACCTTG+AGG | 0.643862 | 5.4:-72291219 | MS.gene038333:CDS |
| GAGCACGAAACTGAATTGGA+AGG | 0.650443 | 5.4:-72291247 | MS.gene038333:CDS |
| TCGACAAAGTTATATCGGAA+GGG | 0.656260 | 5.4:-72291834 | MS.gene038333:CDS |
| ATGAAAGAACATTAGGATAG+CGG | 0.658992 | 5.4:+72292168 | None:intergenic |
| ACTTGACTTGATCAATAGCG+AGG | 0.661642 | 5.4:+72291293 | None:intergenic |
| AATTAATGATATGATAGACG+AGG | 0.692673 | 5.4:-72291908 | MS.gene038333:CDS |
| ATTAACATTTGAAGATAACG+AGG | 0.703915 | 5.4:-72292338 | MS.gene038333:intron |
| CCTGAAGAAGTTGATCAGGG+AGG | 0.753049 | 5.4:+72291776 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAAGAAATAAAAAGA+AGG | + | chr5.4:72295262-72295281 | None:intergenic | 10.0% |
| !!! | TAAGAAATTAACATTTTAAT+TGG | - | chr5.4:72296242-72296261 | MS.gene038333:CDS | 10.0% |
| !! | AAATTCAATTAAAGACAAAT+CGG | + | chr5.4:72292888-72292907 | None:intergenic | 15.0% |
| !! | AAGATATTATAATACTTCTT+AGG | - | chr5.4:72291350-72291369 | MS.gene038333:CDS | 15.0% |
| !! | CTAAAAATATGTTTATAAGT+GGG | - | chr5.4:72291662-72291681 | MS.gene038333:CDS | 15.0% |
| !! | TTACAACTATATATACTAAT+AGG | + | chr5.4:72292483-72292502 | None:intergenic | 15.0% |
| !! | ACAAAGTTAAATAAATTTGC+TGG | - | chr5.4:72295856-72295875 | MS.gene038333:intron | 20.0% |
| !! | ATAAATTATGAAGCTTAAAG+CGG | + | chr5.4:72292414-72292433 | None:intergenic | 20.0% |
| !! | ATATTATAATACTTCTTAGG+TGG | - | chr5.4:72291353-72291372 | MS.gene038333:CDS | 20.0% |
| !! | CAAACTTAGTAATCAATATT+GGG | + | chr5.4:72293964-72293983 | None:intergenic | 20.0% |
| !! | CCTAAAAATATGTTTATAAG+TGG | - | chr5.4:72291661-72291680 | MS.gene038333:CDS | 20.0% |
| !! | CTTTATAAAACTGAATTACA+AGG | + | chr5.4:72291700-72291719 | None:intergenic | 20.0% |
| !! | GACAAACTTCATTATTATAT+AGG | - | chr5.4:72295603-72295622 | MS.gene038333:intron | 20.0% |
| !! | TAAAATAATTGTTTCCTATG+AGG | + | chr5.4:72292021-72292040 | None:intergenic | 20.0% |
| !! | TTCAATCCTTACTATTTATT+AGG | + | chr5.4:72291583-72291602 | None:intergenic | 20.0% |
| !! | TTGGTTGTAAAATTTAAACT+AGG | - | chr5.4:72296806-72296825 | MS.gene038333:intron | 20.0% |
| !!! | AACTTTGTTAAGATTTTTGA+TGG | + | chr5.4:72295844-72295863 | None:intergenic | 20.0% |
| !!! | ATTGATTTTATGTGATATGT+AGG | - | chr5.4:72292215-72292234 | MS.gene038333:CDS | 20.0% |
| !!! | CCACTTATAAACATATTTTT+AGG | + | chr5.4:72291664-72291683 | None:intergenic | 20.0% |
| !!! | CCATCTTAGATTTTTATATT+CGG | + | chr5.4:72291733-72291752 | None:intergenic | 20.0% |
| !!! | GTTTTTATACTGATTGTTTT+TGG | - | chr5.4:72295309-72295328 | MS.gene038333:intron | 20.0% |
| !!! | TATGAAGATTTTTTTGCATT+GGG | - | chr5.4:72293921-72293940 | MS.gene038333:intron | 20.0% |
| ! | AAAAATCACAATGCTTTAGT+TGG | - | chr5.4:72292059-72292078 | MS.gene038333:intron | 25.0% |
| ! | AAAATTCTTAACACTTGTGT+TGG | + | chr5.4:72291919-72291938 | None:intergenic | 25.0% |
| ! | AAATTCTTAACACTTGTGTT+GGG | + | chr5.4:72291918-72291937 | None:intergenic | 25.0% |
| ! | AATACATTTGATGTCAACTA+AGG | + | chr5.4:72295769-72295788 | None:intergenic | 25.0% |
| ! | AATGTTAATTTCTTCTCAAC+AGG | + | chr5.4:72296181-72296200 | None:intergenic | 25.0% |
| ! | AATTAATGATATGATAGACG+AGG | - | chr5.4:72296622-72296641 | MS.gene038333:intron | 25.0% |
| ! | ACAAACAAAACAACATATCT+AGG | + | chr5.4:72291255-72291274 | None:intergenic | 25.0% |
| ! | ACAATTGAAAGAACTTCAAA+AGG | - | chr5.4:72295472-72295491 | MS.gene038333:intron | 25.0% |
| ! | ACGAATAGAGGAAAAAAAAA+TGG | + | chr5.4:72292971-72292990 | None:intergenic | 25.0% |
| ! | ACTTGAAATGAGAAAATACA+AGG | + | chr5.4:72294877-72294896 | None:intergenic | 25.0% |
| ! | AGAGGAAGAAAAAAAACTAT+GGG | + | chr5.4:72295337-72295356 | None:intergenic | 25.0% |
| ! | ATATGAAACTCTCAACAAAA+AGG | + | chr5.4:72291627-72291646 | None:intergenic | 25.0% |
| ! | ATTAACATTTGAAGATAACG+AGG | - | chr5.4:72296192-72296211 | MS.gene038333:intron | 25.0% |
| ! | ATTCAACATGTAACATAATG+AGG | + | chr5.4:72295166-72295185 | None:intergenic | 25.0% |
| ! | CAAACAAAACAACATATCTA+GGG | + | chr5.4:72291254-72291273 | None:intergenic | 25.0% |
| ! | CACATATAGTCAATATTAGT+CGG | + | chr5.4:72294190-72294209 | None:intergenic | 25.0% |
| ! | CCAAACTTAGTAATCAATAT+TGG | + | chr5.4:72293965-72293984 | None:intergenic | 25.0% |
| ! | CCGAATATAAAAATCTAAGA+TGG | - | chr5.4:72291730-72291749 | MS.gene038333:CDS | 25.0% |
| ! | TAGAAACAGGATAAGTATAA+GGG | + | chr5.4:72296462-72296481 | None:intergenic | 25.0% |
| ! | TAGAGGAAGAAAAAAAACTA+TGG | + | chr5.4:72295338-72295357 | None:intergenic | 25.0% |
| ! | TATAAAACTGAATTACAAGG+TGG | + | chr5.4:72291697-72291716 | None:intergenic | 25.0% |
| ! | TCACTTGTACACTATTATAA+AGG | - | chr5.4:72291212-72291231 | MS.gene038333:CDS | 25.0% |
| ! | TTACTATTTATTAGGCGTTA+GGG | + | chr5.4:72291575-72291594 | None:intergenic | 25.0% |
| ! | TTCAACATGTAACATAATGA+GGG | + | chr5.4:72295165-72295184 | None:intergenic | 25.0% |
| ! | TTGAATCTAATGATCTGTAA+AGG | - | chr5.4:72296071-72296090 | MS.gene038333:intron | 25.0% |
| !! | AGTGAAAATTTTCTGAACTT+TGG | - | chr5.4:72293398-72293417 | MS.gene038333:intron | 25.0% |
| !! | ATTTTAAGCCATATCTAATG+TGG | + | chr5.4:72291841-72291860 | None:intergenic | 25.0% |
| !! | CCAATATTGATTACTAAGTT+TGG | - | chr5.4:72293962-72293981 | MS.gene038333:intron | 25.0% |
| !! | TCATAATTTTCGATTCAAGT+CGG | - | chr5.4:72293109-72293128 | MS.gene038333:intron | 25.0% |
| !! | TTTTAAGCCATATCTAATGT+GGG | + | chr5.4:72291840-72291859 | None:intergenic | 25.0% |
| !! | TTTTGTTGAGAGTTTCATAT+TGG | - | chr5.4:72291627-72291646 | MS.gene038333:CDS | 25.0% |
| !!! | AACTTTGGAGATTATTGTTT+TGG | - | chr5.4:72293413-72293432 | MS.gene038333:intron | 25.0% |
| !!! | ATGAAGATTTTTTTGCATTG+GGG | - | chr5.4:72293922-72293941 | MS.gene038333:intron | 25.0% |
| !!! | ATTAAAATTGTTTCTGGAAG+TGG | - | chr5.4:72295502-72295521 | MS.gene038333:intron | 25.0% |
| !!! | CATCTGTTATTTTTGTAAGT+TGG | - | chr5.4:72292179-72292198 | MS.gene038333:CDS | 25.0% |
| !!! | CTATGAAGATTTTTTTGCAT+TGG | - | chr5.4:72293920-72293939 | MS.gene038333:intron | 25.0% |
| !!! | GAGTTTTGAGATATTGTTTA+TGG | - | chr5.4:72293353-72293372 | MS.gene038333:intron | 25.0% |
| !!! | TACAACCAAGTCTTTTTTAA+AGG | + | chr5.4:72296795-72296814 | None:intergenic | 25.0% |
| !!! | TGTATTTTCTCATTTCAAGT+TGG | - | chr5.4:72294877-72294896 | MS.gene038333:intron | 25.0% |
| !!! | TGTGATTTTAACATATGTTG+CGG | - | chr5.4:72295732-72295751 | MS.gene038333:intron | 25.0% |
| AAAAAAACCACAAGATTCGT+GGG | + | chr5.4:72292103-72292122 | None:intergenic | 30.0% | |
| AAAAAGAAGGTAGTCAAAGA+TGG | + | chr5.4:72295249-72295268 | None:intergenic | 30.0% | |
| AACAAATCAATAACAGGAAC+TGG | + | chr5.4:72292827-72292846 | None:intergenic | 30.0% | |
| AACATCATGTACTCAACAAA+AGG | + | chr5.4:72293614-72293633 | None:intergenic | 30.0% | |
| AACCTCAAAAAGAAAATACC+TGG | + | chr5.4:72296410-72296429 | None:intergenic | 30.0% | |
| AACTTCTACTCTCTAGTATT+TGG | - | chr5.4:72293550-72293569 | MS.gene038333:intron | 30.0% | |
| AATGTCAACAAAGCCAATTA+AGG | + | chr5.4:72294718-72294737 | None:intergenic | 30.0% | |
| ACACAACAGTAAAAAACATG+AGG | + | chr5.4:72293179-72293198 | None:intergenic | 30.0% | |
| AGAAACAGGATAAGTATAAG+GGG | + | chr5.4:72296461-72296480 | None:intergenic | 30.0% | |
| AGTAAAAAACATGAGGAAGA+TGG | + | chr5.4:72293172-72293191 | None:intergenic | 30.0% | |
| AGTAAACTTCAATGTAGTCA+AGG | - | chr5.4:72296841-72296860 | MS.gene038333:intron | 30.0% | |
| ATGAAAGAACATTAGGATAG+CGG | + | chr5.4:72296365-72296384 | None:intergenic | 30.0% | |
| ATGAAGGAGAGAAAAACTTA+TGG | + | chr5.4:72292570-72292589 | None:intergenic | 30.0% | |
| ATGTGATATGTAGGAAAATG+TGG | - | chr5.4:72292224-72292243 | MS.gene038333:CDS | 30.0% | |
| CATATATTGTTGGATAGTGT+TGG | - | chr5.4:72294050-72294069 | MS.gene038333:intron | 30.0% | |
| CTAACGCCTAATAAATAGTA+AGG | - | chr5.4:72291574-72291593 | MS.gene038333:CDS | 30.0% | |
| CTAGAAACAGGATAAGTATA+AGG | + | chr5.4:72296463-72296482 | None:intergenic | 30.0% | |
| CTTACTATTTATTAGGCGTT+AGG | + | chr5.4:72291576-72291595 | None:intergenic | 30.0% | |
| GAAAGAAGAAAATTACTGAC+TGG | + | chr5.4:72294437-72294456 | None:intergenic | 30.0% | |
| GAGATGAATGTTAGTAAACA+TGG | + | chr5.4:72295092-72295111 | None:intergenic | 30.0% | |
| GATATGGCTTAAAATTACGT+TGG | - | chr5.4:72291846-72291865 | MS.gene038333:CDS | 30.0% | |
| GATCCAGGAATTAAAACATA+AGG | + | chr5.4:72294003-72294022 | None:intergenic | 30.0% | |
| GGTTCATGATTCTGTTATAT+GGG | - | chr5.4:72293309-72293328 | MS.gene038333:intron | 30.0% | |
| GTTTGAGAAACTCGAAAAAT+TGG | - | chr5.4:72296955-72296974 | MS.gene038333:intron | 30.0% | |
| TCAAATGTATTTCCGTTCTA+TGG | - | chr5.4:72295778-72295797 | MS.gene038333:intron | 30.0% | |
| TCAACATGTAACATAATGAG+GGG | + | chr5.4:72295164-72295183 | None:intergenic | 30.0% | |
| TCCATGTATGAAAGAACATT+AGG | + | chr5.4:72296372-72296391 | None:intergenic | 30.0% | |
| TCCTAATGTTCTTTCATACA+TGG | - | chr5.4:72296368-72296387 | MS.gene038333:intron | 30.0% | |
| TGACTATATGTGAGTTATCT+TGG | - | chr5.4:72294198-72294217 | MS.gene038333:intron | 30.0% | |
| TGCAATCGACAAAGTTATAT+CGG | - | chr5.4:72296691-72296710 | MS.gene038333:intron | 30.0% | |
| TGGTTCATGATTCTGTTATA+TGG | - | chr5.4:72293308-72293327 | MS.gene038333:intron | 30.0% | |
| TTAACATATGTTGCGGTAAA+AGG | - | chr5.4:72295739-72295758 | MS.gene038333:intron | 30.0% | |
| TTGAGAGTTTCATATTGGAT+GGG | - | chr5.4:72291632-72291651 | MS.gene038333:CDS | 30.0% | |
| TTGGTTACAAATAATCCATC+TGG | - | chr5.4:72293779-72293798 | MS.gene038333:intron | 30.0% | |
| TTTGTACATGACAATGTCAT+TGG | - | chr5.4:72293760-72293779 | MS.gene038333:intron | 30.0% | |
| TTTGTTGAGTACATGATGTT+TGG | - | chr5.4:72293614-72293633 | MS.gene038333:intron | 30.0% | |
| ! | AGCTTCAATCTCAACAATTT+TGG | + | chr5.4:72297161-72297180 | None:intergenic | 30.0% |
| ! | AGTATTTGGTTTATCTTGGT+GGG | - | chr5.4:72293564-72293583 | MS.gene038333:intron | 30.0% |
| ! | ATATTGTTACCTTCTGCTTT+TGG | - | chr5.4:72294094-72294113 | MS.gene038333:intron | 30.0% |
| ! | ATGTAGAAATTTTGTCCAGA+TGG | + | chr5.4:72293797-72293816 | None:intergenic | 30.0% |
| ! | CTCTAGTATTTGGTTTATCT+TGG | - | chr5.4:72293560-72293579 | MS.gene038333:intron | 30.0% |
| ! | CTTATACTTATCCTGTTTCT+AGG | - | chr5.4:72296461-72296480 | MS.gene038333:intron | 30.0% |
| ! | GTTGTTAGATCTTGATGATA+TGG | - | chr5.4:72296649-72296668 | MS.gene038333:intron | 30.0% |
| ! | TAGTATTTGGTTTATCTTGG+TGG | - | chr5.4:72293563-72293582 | MS.gene038333:intron | 30.0% |
| ! | TATCGCCTTTAAAAAAGACT+TGG | - | chr5.4:72296787-72296806 | MS.gene038333:intron | 30.0% |
| ! | TTTCTACATTGATAGCTTTG+TGG | - | chr5.4:72293808-72293827 | MS.gene038333:intron | 30.0% |
| ! | TTTTTATGAAATTTGGCAGC+AGG | + | chr5.4:72295956-72295975 | None:intergenic | 30.0% |
| !! | AATCTATATGCCTTGGTTTT+TGG | - | chr5.4:72293704-72293723 | MS.gene038333:intron | 30.0% |
| !! | ACAGGAAAACATTTGACTTT+TGG | + | chr5.4:72296163-72296182 | None:intergenic | 30.0% |
| !! | ACTTAATACTTGTTGGTTCT+TGG | - | chr5.4:72293288-72293307 | MS.gene038333:intron | 30.0% |
| !! | ATCTGTTTTGAATGATGCAA+TGG | - | chr5.4:72293730-72293749 | MS.gene038333:intron | 30.0% |
| !! | GAAATTTGCTGATCAAATTC+CGG | - | chr5.4:72297261-72297280 | MS.gene038333:intron | 30.0% |
| !! | GATTAACTCATGTGTTTTGA+TGG | - | chr5.4:72293331-72293350 | MS.gene038333:intron | 30.0% |
| !! | TATTTTAGATGCATCCTCAT+AGG | - | chr5.4:72292004-72292023 | MS.gene038333:CDS | 30.0% |
| !! | TTAATTGGCTTTGTTGACAT+TGG | - | chr5.4:72294717-72294736 | MS.gene038333:intron | 30.0% |
| !!! | ATGGCTTTGATTCTTGTTTT+TGG | - | chr5.4:72294476-72294495 | MS.gene038333:intron | 30.0% |
| !!! | TGGCTTTGATTCTTGTTTTT+GGG | - | chr5.4:72294477-72294496 | MS.gene038333:intron | 30.0% |
| !!! | TTGCCTTATGTTTTAATTCC+TGG | - | chr5.4:72293997-72294016 | MS.gene038333:intron | 30.0% |
| AAAACTGAATTACAAGGTGG+AGG | + | chr5.4:72291694-72291713 | None:intergenic | 35.0% | |
| AACAGATTCTCCAAAAACCA+AGG | + | chr5.4:72293717-72293736 | None:intergenic | 35.0% | |
| AACATGACATCCATTGATGA+AGG | + | chr5.4:72292586-72292605 | None:intergenic | 35.0% | |
| AAGGTAACAATATAGCAGCT+AGG | + | chr5.4:72294087-72294106 | None:intergenic | 35.0% | |
| AATATGGACAAAACAGTGAC+TGG | + | chr5.4:72293662-72293681 | None:intergenic | 35.0% | |
| AATCAAGAAGAAAACGATCG+AGG | + | chr5.4:72292741-72292760 | None:intergenic | 35.0% | |
| AATTGTGAAACCCTAGGATT+TGG | + | chr5.4:72292929-72292948 | None:intergenic | 35.0% | |
| ACAACAAAGCTTAACCATCA+TGG | + | chr5.4:72294575-72294594 | None:intergenic | 35.0% | |
| ACAAGAAATTGTGAAACCCT+AGG | + | chr5.4:72292935-72292954 | None:intergenic | 35.0% | |
| ACAAGAATCAAAGCCATCAT+AGG | + | chr5.4:72294473-72294492 | None:intergenic | 35.0% | |
| ACTTGCTCAACAAAATTGAG+TGG | - | chr5.4:72296930-72296949 | MS.gene038333:intron | 35.0% | |
| AGAAAGTTAACCCACTTATG+GGG | + | chr5.4:72292509-72292528 | None:intergenic | 35.0% | |
| AGATGTCAATCTATATGCCT+TGG | - | chr5.4:72293697-72293716 | MS.gene038333:intron | 35.0% | |
| AGTCCTCACTTAATACTTGT+TGG | - | chr5.4:72293281-72293300 | MS.gene038333:intron | 35.0% | |
| ATAACAAGTTCCAACTGATG+AGG | + | chr5.4:72293470-72293489 | None:intergenic | 35.0% | |
| ATAAGTGAACCAAAAGCAGA+AGG | + | chr5.4:72294106-72294125 | None:intergenic | 35.0% | |
| ATCAACTTCTTCAGGAATTG+AGG | - | chr5.4:72296762-72296781 | MS.gene038333:intron | 35.0% | |
| ATCATAGTCAATCCAAGATC+TGG | - | chr5.4:72291754-72291773 | MS.gene038333:CDS | 35.0% | |
| ATCGACAAAGTTATATCGGA+AGG | - | chr5.4:72296695-72296714 | MS.gene038333:intron | 35.0% | |
| ATCTTCGGATTCTATATCTG+AGG | + | chr5.4:72296534-72296553 | None:intergenic | 35.0% | |
| ATGTATATGCAAGTTGCAAG+TGG | - | chr5.4:72295287-72295306 | MS.gene038333:intron | 35.0% | |
| ATGTGAGTTATCTTGGCTTA+CGG | - | chr5.4:72294205-72294224 | MS.gene038333:intron | 35.0% | |
| ATTGTGAAACCCTAGGATTT+GGG | + | chr5.4:72292928-72292947 | None:intergenic | 35.0% | |
| ATTTCTTAGTATGTGCCAAC+CGG | + | chr5.4:72296230-72296249 | None:intergenic | 35.0% | |
| CAAAAAAACCACAAGATTCG+TGG | + | chr5.4:72292104-72292123 | None:intergenic | 35.0% | |
| CAAAAGGTAGTCTATACATG+AGG | + | chr5.4:72293598-72293617 | None:intergenic | 35.0% | |
| CACAGATAGAACTAAGTATC+AGG | + | chr5.4:72295211-72295230 | None:intergenic | 35.0% | |
| CATCAGTTACACTCTTACAT+TGG | - | chr5.4:72291501-72291520 | MS.gene038333:CDS | 35.0% | |
| CATGCTTGAAAAACTACAAG+GGG | - | chr5.4:72297129-72297148 | MS.gene038333:CDS | 35.0% | |
| CCATGCTTGAAAAACTACAA+GGG | - | chr5.4:72297128-72297147 | MS.gene038333:CDS | 35.0% | |
| CGAGGAAGAAAAGAAAATGA+AGG | + | chr5.4:72292723-72292742 | None:intergenic | 35.0% | |
| CGATCGAACAAATCAATAAC+AGG | + | chr5.4:72292833-72292852 | None:intergenic | 35.0% | |
| CTAATTCAACCCTACAAAAC+CGG | + | chr5.4:72291894-72291913 | None:intergenic | 35.0% | |
| CTAATTTCCTGCACAACAAT+AGG | + | chr5.4:72296133-72296152 | None:intergenic | 35.0% | |
| CTATGAATGCAGTTAGACAA+TGG | - | chr5.4:72296288-72296307 | MS.gene038333:CDS | 35.0% | |
| CTATTCGTTCTACTTTGTTC+TGG | - | chr5.4:72292983-72293002 | MS.gene038333:intron | 35.0% | |
| CTCATACAAGAATGCAAGTT+GGG | - | chr5.4:72291944-72291963 | MS.gene038333:CDS | 35.0% | |
| CTCATTCTGATTCAAATTGC+AGG | - | chr5.4:72295445-72295464 | MS.gene038333:intron | 35.0% | |
| GAAAATACAAGGAAAGATGC+CGG | + | chr5.4:72294866-72294885 | None:intergenic | 35.0% | |
| GAAAATGTGGCTAAAGAGTT+TGG | - | chr5.4:72292237-72292256 | MS.gene038333:intron | 35.0% | |
| GAACAAAGTAGAACGAATAG+AGG | + | chr5.4:72292983-72293002 | None:intergenic | 35.0% | |
| GAACCAACAAGTATTAAGTG+AGG | + | chr5.4:72293287-72293306 | None:intergenic | 35.0% | |
| GACAAAAAGGAACCTAAACA+AGG | + | chr5.4:72296511-72296530 | None:intergenic | 35.0% | |
| GAGAAAGTTAACCCACTTAT+GGG | + | chr5.4:72292510-72292529 | None:intergenic | 35.0% | |
| GGATGTCATGTTTACTAACA+TGG | - | chr5.4:72292594-72292613 | MS.gene038333:intron | 35.0% | |
| GGCAAGGAATCATATATTGT+TGG | - | chr5.4:72294040-72294059 | MS.gene038333:intron | 35.0% | |
| GTTATATGATCCTGAAAGAG+AGG | - | chr5.4:72295684-72295703 | MS.gene038333:intron | 35.0% | |
| GTTGAGAGTTTCATATTGGA+TGG | - | chr5.4:72291631-72291650 | MS.gene038333:CDS | 35.0% | |
| GTTTCATATTGGATGGGATA+TGG | - | chr5.4:72291638-72291657 | MS.gene038333:CDS | 35.0% | |
| TAAAGTTCGATCTCTTCATC+AGG | + | chr5.4:72295889-72295908 | None:intergenic | 35.0% | |
| TAACAAGTTCCAACTGATGA+GGG | + | chr5.4:72293469-72293488 | None:intergenic | 35.0% | |
| TCAACTTCTTCAGGAATTGA+GGG | - | chr5.4:72296763-72296782 | MS.gene038333:intron | 35.0% | |
| TCGACAAAGTTATATCGGAA+GGG | - | chr5.4:72296696-72296715 | MS.gene038333:intron | 35.0% | |
| TCTATATCTGAGGGACAAAA+AGG | + | chr5.4:72296524-72296543 | None:intergenic | 35.0% | |
| TCTTCGGATTCTATATCTGA+GGG | + | chr5.4:72296533-72296552 | None:intergenic | 35.0% | |
| TGAAACTCTCAACAAAAAGG+TGG | + | chr5.4:72291624-72291643 | None:intergenic | 35.0% | |
| TGAAGAGATCGAACTTTATG+AGG | - | chr5.4:72295891-72295910 | MS.gene038333:intron | 35.0% | |
| TGAGAAAGTTAACCCACTTA+TGG | + | chr5.4:72292511-72292530 | None:intergenic | 35.0% | |
| TGGTTCACTTATGTTGGTAT+TGG | - | chr5.4:72294114-72294133 | MS.gene038333:intron | 35.0% | |
| TTCAAGATAAGCCTAGAAAC+AGG | + | chr5.4:72296475-72296494 | None:intergenic | 35.0% | |
| TTCCAATGATGCTTCATCTT+CGG | + | chr5.4:72296549-72296568 | None:intergenic | 35.0% | |
| TTCCTTATTGCTACTCAGTT+TGG | - | chr5.4:72293870-72293889 | MS.gene038333:intron | 35.0% | |
| TTCTGATTCAAATTGCAGGT+TGG | - | chr5.4:72295449-72295468 | MS.gene038333:intron | 35.0% | |
| TTGTCCATATTCCAAGAACT+GGG | - | chr5.4:72293671-72293690 | MS.gene038333:intron | 35.0% | |
| TTTCTTAGCCGATGTATTTC+CGG | - | chr5.4:72294844-72294863 | MS.gene038333:intron | 35.0% | |
| TTTGTCCATATTCCAAGAAC+TGG | - | chr5.4:72293670-72293689 | MS.gene038333:intron | 35.0% | |
| ! | AATTCCTGAAGAAGTTGATC+AGG | + | chr5.4:72296761-72296780 | None:intergenic | 35.0% |
| ! | ACAATTTTCCCCAAATCCTA+GGG | - | chr5.4:72292916-72292935 | MS.gene038333:intron | 35.0% |
| ! | ATGACTTGTCAGAACAGAAA+GGG | - | chr5.4:72296023-72296042 | MS.gene038333:intron | 35.0% |
| ! | ATTCCTGAAGAAGTTGATCA+GGG | + | chr5.4:72296760-72296779 | None:intergenic | 35.0% |
| ! | ATTTTCTCGAGAAAATGCAG+CGG | + | chr5.4:72292659-72292678 | None:intergenic | 35.0% |
| ! | CATTTCCAATTTGTTCTGCA+AGG | + | chr5.4:72291392-72291411 | None:intergenic | 35.0% |
| ! | CTACTTTGTTCTGGTAGTTT+TGG | - | chr5.4:72292992-72293011 | MS.gene038333:intron | 35.0% |
| ! | CTGAATGGTTTGTGTACTTT+GGG | - | chr5.4:72294151-72294170 | MS.gene038333:intron | 35.0% |
| ! | GACGTCATTTAACGTTTTCA+AGG | - | chr5.4:72291470-72291489 | MS.gene038333:CDS | 35.0% |
| ! | GATCGTTTGTGACGTAATTT+TGG | - | chr5.4:72294019-72294038 | MS.gene038333:intron | 35.0% |
| ! | GATTGAAGTGCATTAACTTG+TGG | - | chr5.4:72291596-72291615 | MS.gene038333:CDS | 35.0% |
| ! | GTTTTTCTCTCCTTCATCAA+TGG | - | chr5.4:72292573-72292592 | MS.gene038333:intron | 35.0% |
| ! | TATGACTTGTCAGAACAGAA+AGG | - | chr5.4:72296022-72296041 | MS.gene038333:intron | 35.0% |
| ! | TCTTGATGATATGGTAGATG+TGG | - | chr5.4:72296658-72296677 | MS.gene038333:intron | 35.0% |
| ! | TGAACGTTGTTTCCTTGTTT+AGG | - | chr5.4:72296496-72296515 | MS.gene038333:intron | 35.0% |
| !! | ATCTTACAAACCGGTTTTGT+AGG | - | chr5.4:72291881-72291900 | MS.gene038333:CDS | 35.0% |
| !! | CATCAGTTGGAACTTGTTAT+TGG | - | chr5.4:72293470-72293489 | MS.gene038333:intron | 35.0% |
| !! | CTGATACTTAGTTCTATCTG+TGG | - | chr5.4:72295209-72295228 | MS.gene038333:intron | 35.0% |
| !! | TATCTGTGGTACCTGTTTTT+CGG | - | chr5.4:72295223-72295242 | MS.gene038333:intron | 35.0% |
| !! | TCTTACAAACCGGTTTTGTA+GGG | - | chr5.4:72291882-72291901 | MS.gene038333:CDS | 35.0% |
| !! | TGCATATTGGCTTCTATCAA+TGG | - | chr5.4:72294303-72294322 | MS.gene038333:intron | 35.0% |
| !! | TGTGTTCATTGACTTCTTGT+TGG | - | chr5.4:72293500-72293519 | MS.gene038333:intron | 35.0% |
| !! | TTTGTGACGTAATTTTGGCA+AGG | - | chr5.4:72294024-72294043 | MS.gene038333:intron | 35.0% |
| !!! | GATTATTGTTTTGGTCTGCT+TGG | - | chr5.4:72293422-72293441 | MS.gene038333:intron | 35.0% |
| !!! | TGCTTTTGGTTCACTTATGT+TGG | - | chr5.4:72294108-72294127 | MS.gene038333:intron | 35.0% |
| AAACACATGGTGAGCACAAA+AGG | + | chr5.4:72293255-72293274 | None:intergenic | 40.0% | |
| AAACTTGGTATCCACCTTGA+AGG | - | chr5.4:72292626-72292645 | MS.gene038333:intron | 40.0% | |
| AACATGGCATCCATTGATGA+AGG | + | chr5.4:72295076-72295095 | None:intergenic | 40.0% | |
| AACGAGGTATAGTACATACC+CGG | - | chr5.4:72296208-72296227 | MS.gene038333:CDS | 40.0% | |
| AAGACAAATCGGAATCACGA+AGG | + | chr5.4:72292877-72292896 | None:intergenic | 40.0% | |
| AATATAGCAGCTAGGCTCAA+GGG | + | chr5.4:72294079-72294098 | None:intergenic | 40.0% | |
| AATTACGTCACAAACGATCC+AGG | + | chr5.4:72294018-72294037 | None:intergenic | 40.0% | |
| AATTGTGCCTATTGTTGTGC+AGG | - | chr5.4:72296123-72296142 | MS.gene038333:intron | 40.0% | |
| ACAACAAGGCTTAACCATCA+TGG | + | chr5.4:72294510-72294529 | None:intergenic | 40.0% | |
| ACATATGTTGCGGTAAAAGG+TGG | - | chr5.4:72295742-72295761 | MS.gene038333:intron | 40.0% | |
| ACATGGTATCAGAGCAAACT+TGG | - | chr5.4:72292611-72292630 | MS.gene038333:intron | 40.0% | |
| AGAAGGTCTACAAAACCTTG+AGG | - | chr5.4:72297311-72297330 | MS.gene038333:intron | 40.0% | |
| AGGTTGAACCAATTGAAGGA+AGG | + | chr5.4:72294780-72294799 | None:intergenic | 40.0% | |
| ATGGTAGATGTGGATGTCAT+TGG | - | chr5.4:72296668-72296687 | MS.gene038333:intron | 40.0% | |
| CAAGAGAGTTGAGTTCTGTT+TGG | + | chr5.4:72297084-72297103 | None:intergenic | 40.0% | |
| CCAACTTGCATTCTTGTATG+AGG | + | chr5.4:72291946-72291965 | None:intergenic | 40.0% | |
| CCTCATACAAGAATGCAAGT+TGG | - | chr5.4:72291943-72291962 | MS.gene038333:CDS | 40.0% | |
| CCTTCAATTCCTCATTATCC+CGG | + | chr5.4:72297015-72297034 | None:intergenic | 40.0% | |
| CTCAAGGTTGAACCAATTGA+AGG | + | chr5.4:72294784-72294803 | None:intergenic | 40.0% | |
| GAAAGATGCCGGAAATACAT+CGG | + | chr5.4:72294855-72294874 | None:intergenic | 40.0% | |
| GAAGACCTTGCAGAACAAAT+TGG | - | chr5.4:72291384-72291403 | MS.gene038333:CDS | 40.0% | |
| GAAGGTCTACAAAACCTTGA+GGG | - | chr5.4:72297312-72297331 | MS.gene038333:intron | 40.0% | |
| GAGATCGAACTTTATGAGGT+TGG | - | chr5.4:72295895-72295914 | MS.gene038333:intron | 40.0% | |
| GAGTGATTGAACACTCTTGA+TGG | - | chr5.4:72294680-72294699 | MS.gene038333:intron | 40.0% | |
| GCATCTCTCATCTTACAAAC+CGG | - | chr5.4:72291872-72291891 | MS.gene038333:CDS | 40.0% | |
| GCATTGTGTTTGACACTAAG+TGG | - | chr5.4:72294332-72294351 | MS.gene038333:intron | 40.0% | |
| GCCATGCTTGAAAAACTACA+AGG | - | chr5.4:72297127-72297146 | MS.gene038333:CDS | 40.0% | |
| GTAGAGTCCCACATTAGATA+TGG | - | chr5.4:72291830-72291849 | MS.gene038333:CDS | 40.0% | |
| TGAATTGGAAGGTCATGAGA+AGG | - | chr5.4:72297294-72297313 | MS.gene038333:intron | 40.0% | |
| TGCCAAACTGAGTAGCAATA+AGG | + | chr5.4:72293875-72293894 | None:intergenic | 40.0% | |
| TGGAGCATATTCTCTTTGCA+GGG | - | chr5.4:72294392-72294411 | MS.gene038333:intron | 40.0% | |
| TTCTCTTTGCAGGGATGTAT+TGG | - | chr5.4:72294401-72294420 | MS.gene038333:intron | 40.0% | |
| TTGAACACCTTCCAACTTGA+GGG | - | chr5.4:72294908-72294927 | MS.gene038333:intron | 40.0% | |
| TTGATGCTCCTTCCTTCAAT+TGG | - | chr5.4:72294769-72294788 | MS.gene038333:intron | 40.0% | |
| TTGGAGCATATTCTCTTTGC+AGG | - | chr5.4:72294391-72294410 | MS.gene038333:intron | 40.0% | |
| TTGTGAAACCCTAGGATTTG+GGG | + | chr5.4:72292927-72292946 | None:intergenic | 40.0% | |
| TTGTTGACCTTGACAAAGTG+AGG | - | chr5.4:72291427-72291446 | MS.gene038333:CDS | 40.0% | |
| TTTCTTAGTATGTGCCAACC+GGG | + | chr5.4:72296229-72296248 | None:intergenic | 40.0% | |
| TTTGAACACCTTCCAACTTG+AGG | - | chr5.4:72294907-72294926 | MS.gene038333:intron | 40.0% | |
| ! | ACTTGACTTGATCAATAGCG+AGG | + | chr5.4:72297240-72297259 | None:intergenic | 40.0% |
| ! | ATCCGAAGATGAAGCATCAT+TGG | - | chr5.4:72296544-72296563 | MS.gene038333:intron | 40.0% |
| ! | ATTGGTTCAACCTTGAGTTG+TGG | - | chr5.4:72294787-72294806 | MS.gene038333:intron | 40.0% |
| ! | CAATTGTGAAGCTTCTGGTT+TGG | - | chr5.4:72293836-72293855 | MS.gene038333:intron | 40.0% |
| ! | CACAATTTTCCCCAAATCCT+AGG | - | chr5.4:72292915-72292934 | MS.gene038333:intron | 40.0% |
| ! | CGCCAGGTATTTTCTTTTTG+AGG | - | chr5.4:72296405-72296424 | MS.gene038333:intron | 40.0% |
| ! | GCTGAATGGTTTGTGTACTT+TGG | - | chr5.4:72294150-72294169 | MS.gene038333:intron | 40.0% |
| ! | GCTTACGGTACAGATTAGTT+TGG | - | chr5.4:72294220-72294239 | MS.gene038333:intron | 40.0% |
| ! | GTTAAGCGTTGTGCCTTAAT+TGG | - | chr5.4:72294702-72294721 | MS.gene038333:intron | 40.0% |
| ! | TCTCTGTTGTTAGCCTATGA+TGG | - | chr5.4:72294457-72294476 | MS.gene038333:intron | 40.0% |
| ! | TTCAACCAGGGTGATAATGA+AGG | + | chr5.4:72294268-72294287 | None:intergenic | 40.0% |
| ! | TTTGGTTTATCTTGGTGGGT+TGG | - | chr5.4:72293568-72293587 | MS.gene038333:intron | 40.0% |
| !! | AATTCCAGCGCTTTTGGTTA+TGG | - | chr5.4:72292271-72292290 | MS.gene038333:intron | 40.0% |
| !! | ATGACGTCTGCTTTTGAACA+CGG | + | chr5.4:72291458-72291477 | None:intergenic | 40.0% |
| !! | ATTCCAGCGCTTTTGGTTAT+GGG | - | chr5.4:72292272-72292291 | MS.gene038333:intron | 40.0% |
| !! | CGGTTTTGTAGGGTTGAATT+AGG | - | chr5.4:72291892-72291911 | MS.gene038333:CDS | 40.0% |
| !! | TCTTTGCTTGCTGTTCTGTT+TGG | - | chr5.4:72294372-72294391 | MS.gene038333:intron | 40.0% |
| !! | TGTTGGTAGTTCATGAAGCT+GGG | - | chr5.4:72293517-72293536 | MS.gene038333:intron | 40.0% |
| !! | TTGTTGACATTGGCTTCTAC+CGG | - | chr5.4:72294727-72294746 | MS.gene038333:intron | 40.0% |
| !! | TTGTTGGTAGTTCATGAAGC+TGG | - | chr5.4:72293516-72293535 | MS.gene038333:intron | 40.0% |
| !!! | CCCTTGTAGTTTTTCAAGCA+TGG | + | chr5.4:72297131-72297150 | None:intergenic | 40.0% |
| AAACGACGCTTAACCATCCT+TGG | + | chr5.4:72294637-72294656 | None:intergenic | 45.0% | |
| AAGTTAACCCACTTATGGGG+AGG | + | chr5.4:72292506-72292525 | None:intergenic | 45.0% | |
| ACCATACATGTCGACCATCT+CGG | - | chr5.4:72292307-72292326 | MS.gene038333:intron | 45.0% | |
| AGGTATAGTACATACCCGGT+TGG | - | chr5.4:72296212-72296231 | MS.gene038333:CDS | 45.0% | |
| AGTAGCCTTCATTATCACCC+TGG | - | chr5.4:72294260-72294279 | MS.gene038333:intron | 45.0% | |
| AGTTGTAACCTCCCCATAAG+TGG | - | chr5.4:72292495-72292514 | MS.gene038333:intron | 45.0% | |
| ATCCTGAAAGAGAGGAGCTA+CGG | - | chr5.4:72295692-72295711 | MS.gene038333:intron | 45.0% | |
| ATGAGGGCAGCAACAATCAA+AGG | + | chr5.4:72293453-72293472 | None:intergenic | 45.0% | |
| CAAGAAGCAACCACAACTCA+AGG | + | chr5.4:72294800-72294819 | None:intergenic | 45.0% | |
| CAATATAGCAGCTAGGCTCA+AGG | + | chr5.4:72294080-72294099 | None:intergenic | 45.0% | |
| CAATTCCTCATTATCCCGGT+CGG | + | chr5.4:72297011-72297030 | None:intergenic | 45.0% | |
| CATATGTCCCACGAATCTTG+TGG | - | chr5.4:72292093-72292112 | MS.gene038333:intron | 45.0% | |
| CATTATCACCCTGGTTGAAG+AGG | - | chr5.4:72294269-72294288 | MS.gene038333:intron | 45.0% | |
| CCAAGATCTGGTGAGTCATT+GGG | - | chr5.4:72291766-72291785 | MS.gene038333:CDS | 45.0% | |
| CCACTCAATATCGGAGAGAA+TGG | - | chr5.4:72295643-72295662 | MS.gene038333:intron | 45.0% | |
| CCAGCATAACTGCCATAGAA+CGG | + | chr5.4:72295793-72295812 | None:intergenic | 45.0% | |
| CCATTCTCTCCGATATTGAG+TGG | + | chr5.4:72295646-72295665 | None:intergenic | 45.0% | |
| CCGGGATAATGAGGAATTGA+AGG | - | chr5.4:72297012-72297031 | MS.gene038333:intron | 45.0% | |
| CTGCTCAATTGTGAAGCTTC+TGG | - | chr5.4:72293831-72293850 | MS.gene038333:intron | 45.0% | |
| CTTCCTCTAAATGCTTGCGA+GGG | - | chr5.4:72295349-72295368 | MS.gene038333:intron | 45.0% | |
| GAAGTTCTGCATCTGCTGAA+TGG | - | chr5.4:72294136-72294155 | MS.gene038333:intron | 45.0% | |
| GAGAGTTGAGTTCTGTTTGG+TGG | + | chr5.4:72297081-72297100 | None:intergenic | 45.0% | |
| GAGCACGAAACTGAATTGGA+AGG | - | chr5.4:72297283-72297302 | MS.gene038333:intron | 45.0% | |
| GAGGACTTTCCACAAACACA+TGG | + | chr5.4:72293268-72293287 | None:intergenic | 45.0% | |
| GAGTTGTGGTTGCTTCTTGT+TGG | - | chr5.4:72294801-72294820 | MS.gene038333:intron | 45.0% | |
| GCAGCGGAAAATATCCTTCA+AGG | + | chr5.4:72292643-72292662 | None:intergenic | 45.0% | |
| GCGGAAAATATCCTTCAAGG+TGG | + | chr5.4:72292640-72292659 | None:intergenic | 45.0% | |
| GGAAACTCCTCACTTTGTCA+AGG | + | chr5.4:72291437-72291456 | None:intergenic | 45.0% | |
| GGAATATGTGTACAATCGCC+AGG | - | chr5.4:72296389-72296408 | MS.gene038333:intron | 45.0% | |
| GGTGCTCTGATATTAGCAAC+CGG | - | chr5.4:72293635-72293654 | MS.gene038333:intron | 45.0% | |
| GTCAAAGATGGCCGAAAAAC+AGG | + | chr5.4:72295237-72295256 | None:intergenic | 45.0% | |
| GTTGTAACCTCCCCATAAGT+GGG | - | chr5.4:72292496-72292515 | MS.gene038333:intron | 45.0% | |
| TACTTCTTAGGTGGTACGAG+AGG | - | chr5.4:72291362-72291381 | MS.gene038333:CDS | 45.0% | |
| TCCAAGATCTGGTGAGTCAT+TGG | - | chr5.4:72291765-72291784 | MS.gene038333:CDS | 45.0% | |
| TCCAATTCAGTTTCGTGCTC+CGG | + | chr5.4:72297283-72297302 | None:intergenic | 45.0% | |
| TCTAATAGTCCCCCTCAAGT+TGG | + | chr5.4:72294922-72294941 | None:intergenic | 45.0% | |
| TCTATGGCAGTTATGCTGGA+AGG | - | chr5.4:72295794-72295813 | MS.gene038333:intron | 45.0% | |
| TCTGGTGAGTCATTGGGTAT+CGG | - | chr5.4:72291772-72291791 | MS.gene038333:CDS | 45.0% | |
| TCTTCCTCTAAATGCTTGCG+AGG | - | chr5.4:72295348-72295367 | MS.gene038333:intron | 45.0% | |
| TGAACACCTTCCAACTTGAG+GGG | - | chr5.4:72294909-72294928 | MS.gene038333:intron | 45.0% | |
| TGTGCCCAGTTCTTGGAATA+TGG | + | chr5.4:72293678-72293697 | None:intergenic | 45.0% | |
| TGTTGTGCTTCTGTCATGGA+TGG | - | chr5.4:72294524-72294543 | MS.gene038333:intron | 45.0% | |
| TGTTGTGCTTCTGTCCATGA+TGG | - | chr5.4:72294558-72294577 | MS.gene038333:intron | 45.0% | |
| TTGTGCTCACCATGTGTTTG+TGG | - | chr5.4:72293256-72293275 | MS.gene038333:intron | 45.0% | |
| ! | GCTTTGTTGTGCTTCTGTCA+TGG | - | chr5.4:72294585-72294604 | MS.gene038333:intron | 45.0% |
| ! | TCCATGACAGAAGCACAACA+AGG | + | chr5.4:72294524-72294543 | None:intergenic | 45.0% |
| ! | TTCTGTTTGGTGGATGTCGA+GGG | + | chr5.4:72297071-72297090 | None:intergenic | 45.0% |
| ! | TTTCCCATAACCAAAAGCGC+TGG | + | chr5.4:72292278-72292297 | None:intergenic | 45.0% |
| ! | TTTTGGGCTTCTGTCCATGA+TGG | - | chr5.4:72294493-72294512 | MS.gene038333:intron | 45.0% |
| !! | GGACTTGCTGATGTGCATAT+TGG | - | chr5.4:72294290-72294309 | MS.gene038333:intron | 45.0% |
| !!! | CAGGAACTGGTTTTGAGTAC+AGG | + | chr5.4:72292814-72292833 | None:intergenic | 45.0% |
| !!! | ATTTAAATTTTTATGAAATT+TGG | + | chr5.4:72295963-72295982 | None:intergenic | 5.0% |
| AAATGGAGGGTTTGCCCTCA+AGG | + | chr5.4:72297329-72297348 | None:intergenic | 50.0% | |
| AGCAACGCTTAACCACCATC+CGG | + | chr5.4:72294749-72294768 | None:intergenic | 50.0% | |
| AGGTCATGCCTCAAAGTGTG+AGG | - | chr5.4:72291801-72291820 | MS.gene038333:CDS | 50.0% | |
| ATGTCTGTCAGAAGCCGAGA+TGG | + | chr5.4:72292324-72292343 | None:intergenic | 50.0% | |
| CAGCAAGTCCTCTTCAACCA+GGG | + | chr5.4:72294280-72294299 | None:intergenic | 50.0% | |
| CCCAATGACTCACCAGATCT+TGG | + | chr5.4:72291769-72291788 | None:intergenic | 50.0% | |
| CCCACTGCACCACTCAATAT+CGG | - | chr5.4:72295634-72295653 | MS.gene038333:intron | 50.0% | |
| CCGATATTGAGTGGTGCAGT+GGG | + | chr5.4:72295637-72295656 | None:intergenic | 50.0% | |
| CCGTTCTATGGCAGTTATGC+TGG | - | chr5.4:72295790-72295809 | MS.gene038333:intron | 50.0% | |
| CCTCCCTGATCAACTTCTTC+AGG | - | chr5.4:72296754-72296773 | MS.gene038333:intron | 50.0% | |
| CTTGATCAATAGCGAGGCGA+TGG | + | chr5.4:72297234-72297253 | None:intergenic | 50.0% | |
| GAACACCTTCCAACTTGAGG+GGG | - | chr5.4:72294910-72294929 | MS.gene038333:intron | 50.0% | |
| GGACAAAACAGTGACTGGAC+CGG | + | chr5.4:72293657-72293676 | None:intergenic | 50.0% | |
| GGTCATGCCTCAAAGTGTGA+GGG | - | chr5.4:72291802-72291821 | MS.gene038333:CDS | 50.0% | |
| TACCGTAGCTCCTCTCTTTC+AGG | + | chr5.4:72295697-72295716 | None:intergenic | 50.0% | |
| TCAGCAAGTCCTCTTCAACC+AGG | + | chr5.4:72294281-72294300 | None:intergenic | 50.0% | |
| TCCGATATTGAGTGGTGCAG+TGG | + | chr5.4:72295638-72295657 | None:intergenic | 50.0% | |
| TCCGGAGCACGAAACTGAAT+TGG | - | chr5.4:72297279-72297298 | MS.gene038333:intron | 50.0% | |
| TGACATCTGTGCCCAGTTCT+TGG | + | chr5.4:72293685-72293704 | None:intergenic | 50.0% | |
| TTGTTGCTGCCCTCATCAGT+TGG | - | chr5.4:72293457-72293476 | MS.gene038333:intron | 50.0% | |
| ! | CAGCTCAATTCCAGCGCTTT+TGG | - | chr5.4:72292265-72292284 | MS.gene038333:intron | 50.0% |
| ! | CCTGAAGAAGTTGATCAGGG+AGG | + | chr5.4:72296757-72296776 | None:intergenic | 50.0% |
| ! | GCCTTGTTGTGCTTCTGTCA+TGG | - | chr5.4:72294520-72294539 | MS.gene038333:intron | 50.0% |
| ! | GTTCTGTTTGGTGGATGTCG+AGG | + | chr5.4:72297072-72297091 | None:intergenic | 50.0% |
| !! | ATAGTCCCCCTCAAGTTGGA+AGG | + | chr5.4:72294918-72294937 | None:intergenic | 50.0% |
| !! | CAAAAGCGCTGGAATTGAGC+TGG | + | chr5.4:72292267-72292286 | None:intergenic | 50.0% |
| !! | TCATTGGGTATCGGCGACTT+AGG | - | chr5.4:72291781-72291800 | MS.gene038333:CDS | 50.0% |
| !! | TGACATTGGCTTCTACCGGA+TGG | - | chr5.4:72294731-72294750 | MS.gene038333:intron | 50.0% |
| !! | TGTTTCTGGAAGTGGAGCGT+GGG | - | chr5.4:72295510-72295529 | MS.gene038333:intron | 50.0% |
| !! | TTGTTTCTGGAAGTGGAGCG+TGG | - | chr5.4:72295509-72295528 | MS.gene038333:intron | 50.0% |
| ACGCGTACCCTCACACTTTG+AGG | + | chr5.4:72291812-72291831 | None:intergenic | 55.0% | |
| GCACCCTCGCAAGCATTTAG+AGG | + | chr5.4:72295355-72295374 | None:intergenic | 55.0% | |
| GCCGAGATGGTCGACATGTA+TGG | + | chr5.4:72292311-72292330 | None:intergenic | 55.0% | |
| GTCGTGCTTCTGTCCAAGGA+TGG | - | chr5.4:72294621-72294640 | MS.gene038333:intron | 55.0% | |
| !! | CATTGGCTTCTACCGGATGG+TGG | - | chr5.4:72294734-72294753 | MS.gene038333:intron | 55.0% |
| CGTCGTCGTGCTTCTGTCCA+AGG | - | chr5.4:72294617-72294636 | MS.gene038333:intron | 60.0% | |
| ! | ATCCCGGTCGGTGCTCTTCT+TGG | + | chr5.4:72296999-72297018 | None:intergenic | 60.0% |
| !! | AGCCAAGAAGAGCACCGACC+GGG | - | chr5.4:72296994-72297013 | MS.gene038333:intron | 60.0% |
| !! | CAGCCAAGAAGAGCACCGAC+CGG | - | chr5.4:72296993-72297012 | MS.gene038333:intron | 60.0% |
| !! | GAGCACCGACCGGGATAATG+AGG | - | chr5.4:72297003-72297022 | MS.gene038333:intron | 60.0% |
| TCTGGAAGTGGAGCGTGGGC+TGG | - | chr5.4:72295514-72295533 | MS.gene038333:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 72291201 | 72297351 | 72291201 | ID=MS.gene038333 |
| chr5.4 | mRNA | 72291201 | 72297351 | 72291201 | ID=MS.gene038333.t1;Parent=MS.gene038333 |
| chr5.4 | exon | 72297319 | 72297351 | 72297319 | ID=MS.gene038333.t1.exon1;Parent=MS.gene038333.t1 |
| chr5.4 | CDS | 72297319 | 72297351 | 72297319 | ID=cds.MS.gene038333.t1;Parent=MS.gene038333.t1 |
| chr5.4 | exon | 72297061 | 72297180 | 72297061 | ID=MS.gene038333.t1.exon2;Parent=MS.gene038333.t1 |
| chr5.4 | CDS | 72297061 | 72297180 | 72297061 | ID=cds.MS.gene038333.t1;Parent=MS.gene038333.t1 |
| chr5.4 | exon | 72296193 | 72296315 | 72296193 | ID=MS.gene038333.t1.exon3;Parent=MS.gene038333.t1 |
| chr5.4 | CDS | 72296193 | 72296315 | 72296193 | ID=cds.MS.gene038333.t1;Parent=MS.gene038333.t1 |
| chr5.4 | exon | 72293017 | 72293085 | 72293017 | ID=MS.gene038333.t1.exon4;Parent=MS.gene038333.t1 |
| chr5.4 | CDS | 72293017 | 72293085 | 72293017 | ID=cds.MS.gene038333.t1;Parent=MS.gene038333.t1 |
| chr5.4 | exon | 72292839 | 72292927 | 72292839 | ID=MS.gene038333.t1.exon5;Parent=MS.gene038333.t1 |
| chr5.4 | CDS | 72292839 | 72292927 | 72292839 | ID=cds.MS.gene038333.t1;Parent=MS.gene038333.t1 |
| chr5.4 | exon | 72292640 | 72292748 | 72292640 | ID=MS.gene038333.t1.exon6;Parent=MS.gene038333.t1 |
| chr5.4 | CDS | 72292640 | 72292748 | 72292640 | ID=cds.MS.gene038333.t1;Parent=MS.gene038333.t1 |
| chr5.4 | exon | 72292339 | 72292407 | 72292339 | ID=MS.gene038333.t1.exon7;Parent=MS.gene038333.t1 |
| chr5.4 | CDS | 72292339 | 72292407 | 72292339 | ID=cds.MS.gene038333.t1;Parent=MS.gene038333.t1 |
| chr5.4 | exon | 72292142 | 72292252 | 72292142 | ID=MS.gene038333.t1.exon8;Parent=MS.gene038333.t1 |
| chr5.4 | CDS | 72292142 | 72292252 | 72292142 | ID=cds.MS.gene038333.t1;Parent=MS.gene038333.t1 |
| chr5.4 | exon | 72291201 | 72292034 | 72291201 | ID=MS.gene038333.t1.exon9;Parent=MS.gene038333.t1 |
| chr5.4 | CDS | 72291201 | 72292034 | 72291201 | ID=cds.MS.gene038333.t1;Parent=MS.gene038333.t1 |
| Gene Sequence |
| Protein sequence |
